CANDIDATE ID: 118

CANDIDATE ID: 118

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9964657e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    5.7142857e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G2002 (sapA) (b1294)
   Products of gene:
     - SAPA-MONOMER (SapA)
     - ABC-29-CPLX (peptide uptake ABC transporter)
       Reactions:
        ATP + a peptide[periplasmic space] + H2O  ->  ADP + phosphate + a peptide[cytosol]

- G2001 (sapB) (b1293)
   Products of gene:
     - SAPB-MONOMER (SapB)
     - ABC-29-CPLX (peptide uptake ABC transporter)
       Reactions:
        ATP + a peptide[periplasmic space] + H2O  ->  ADP + phosphate + a peptide[cytosol]

- G2000 (sapC) (b1292)
   Products of gene:
     - SAPC-MONOMER (SapC)
     - ABC-29-CPLX (peptide uptake ABC transporter)
       Reactions:
        ATP + a peptide[periplasmic space] + H2O  ->  ADP + phosphate + a peptide[cytosol]

- EG12626 (dppC) (b3542)
   Products of gene:
     - DPPC-MONOMER (DppC)
     - ABC-8-CPLX (dipeptide ABC transporter)
       Reactions:
        ATP + a dipeptide[periplasmic space] + H2O  ->  ADP + phosphate + a dipeptide[cytosol]

- EG12305 (sapF) (b1290)
   Products of gene:
     - SAPF-MONOMER (SapF)
     - ABC-29-CPLX (peptide uptake ABC transporter)
       Reactions:
        ATP + a peptide[periplasmic space] + H2O  ->  ADP + phosphate + a peptide[cytosol]

- EG12304 (sapD) (b1291)
   Products of gene:
     - SAPD-MONOMER (SapD)
     - ABC-29-CPLX (peptide uptake ABC transporter)
       Reactions:
        ATP + a peptide[periplasmic space] + H2O  ->  ADP + phosphate + a peptide[cytosol]

- EG10248 (dppA) (b3544)
   Products of gene:
     - DPPA-MONOMER (DppA)
     - ABC-8-CPLX (dipeptide ABC transporter)
       Reactions:
        ATP + a dipeptide[periplasmic space] + H2O  ->  ADP + phosphate + a dipeptide[cytosol]



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 166
Effective number of orgs (counting one per cluster within 468 clusters): 112

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317587
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329537
YPES386656 ncbi Yersinia pestis Pestoides F7
YPES377628 ncbi Yersinia pestis Nepal5167
YPES360102 ncbi Yersinia pestis Antiqua7
YPES349746 ncbi Yersinia pestis Angola7
YPES214092 ncbi Yersinia pestis CO927
YPES187410 ncbi Yersinia pestis KIM 107
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80817
VVUL216895 ncbi Vibrio vulnificus CMCP67
VVUL196600 ncbi Vibrio vulnificus YJ0167
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106337
VFIS312309 ncbi Vibrio fischeri ES1147
VEIS391735 ncbi Verminephrobacter eiseniae EF01-27
VCHO345073 ncbi Vibrio cholerae O3957
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169617
TROS309801 ncbi Thermomicrobium roseum DSM 51596
TLET416591 ncbi Thermotoga lettingae TMO7
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
STRO369723 ncbi Salinispora tropica CNB-4406
STHE292459 ncbi Symbiobacterium thermophilum IAM 148637
SSP94122 ncbi Shewanella sp. ANA-37
SSP644076 Silicibacter sp. TrichCH4B7
SSP292414 ncbi Ruegeria sp. TM10407
SSON300269 ncbi Shigella sonnei Ss0467
SSED425104 ncbi Shewanella sediminis HAW-EB37
SPRO399741 ncbi Serratia proteamaculans 5687
SPEA398579 ncbi Shewanella pealeana ATCC 7003457
SONE211586 ncbi Shewanella oneidensis MR-17
SMEL266834 ncbi Sinorhizobium meliloti 10217
SMED366394 ncbi Sinorhizobium medicae WSM4197
SLOI323850 ncbi Shewanella loihica PV-47
SLAC55218 Ruegeria lacuscaerulensis7
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SHAL458817 ncbi Shewanella halifaxensis HAW-EB47
SGLO343509 ncbi Sodalis glossinidius morsitans7
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SDYS300267 ncbi Shigella dysenteriae Sd1977
SDEN318161 ncbi Shewanella denitrificans OS2176
SBOY300268 ncbi Shigella boydii Sb2277
SBAL402882 ncbi Shewanella baltica OS1857
SBAL399599 ncbi Shewanella baltica OS1957
SARE391037 ncbi Salinispora arenicola CNS-2056
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99416
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170256
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170297
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.17
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111707
RPOM246200 ncbi Ruegeria pomeroyi DSS-36
RMET266264 ncbi Ralstonia metallidurans CH346
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38417
RFER338969 ncbi Rhodoferax ferrireducens T1187
REUT381666 ncbi Ralstonia eutropha H167
RETL347834 ncbi Rhizobium etli CFN 427
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30006
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a7
PSP56811 Psychrobacter sp.7
PSP296591 ncbi Polaromonas sp. JS6667
PPUT76869 ncbi Pseudomonas putida GB-17
PPUT351746 ncbi Pseudomonas putida F17
PPUT160488 ncbi Pseudomonas putida KT24407
PPRO298386 ncbi Photobacterium profundum SS97
PMUL272843 ncbi Pasteurella multocida multocida Pm707
PMEN399739 ncbi Pseudomonas mendocina ymp7
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO17
PING357804 ncbi Psychromonas ingrahamii 377
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1257
PFLU220664 ncbi Pseudomonas fluorescens Pf-57
PFLU216595 ncbi Pseudomonas fluorescens SBW257
PFLU205922 ncbi Pseudomonas fluorescens Pf0-17
PENT384676 ncbi Pseudomonas entomophila L487
PCRY335284 ncbi Psychrobacter cryohalolentis K57
PATL342610 ncbi Pseudoalteromonas atlantica T6c7
PAER208964 ncbi Pseudomonas aeruginosa PAO17
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA147
OIHE221109 ncbi Oceanobacillus iheyensis HTE8317
OANT439375 ncbi Ochrobactrum anthropi ATCC 491887
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E7
MSP409 Methylobacterium sp.7
MSP400668 ncbi Marinomonas sp. MWYL17
MSP266779 ncbi Chelativorans sp. BNC17
MLOT266835 ncbi Mesorhizobium loti MAFF3030997
LSPH444177 ncbi Lysinibacillus sphaericus C3-417
KRAD266940 ncbi Kineococcus radiotolerans SRS302166
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785787
ILOI283942 ncbi Idiomarina loihiensis L2TR6
HSOM228400 ncbi Haemophilus somnus 23366
HSOM205914 ncbi Haemophilus somnus 129PT6
HPYL357544 ncbi Helicobacter pylori HPAG16
HPY ncbi Helicobacter pylori 266956
HINF71421 ncbi Haemophilus influenzae Rd KW207
HINF374930 ncbi Haemophilus influenzae PittEE7
HINF281310 ncbi Haemophilus influenzae 86-028NP7
HDUC233412 ncbi Haemophilus ducreyi 35000HP7
HACI382638 ncbi Helicobacter acinonychis Sheeba6
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-27
ESP42895 Enterobacter sp.7
EFER585054 ncbi Escherichia fergusonii ATCC 354697
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O17
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10437
DRED349161 ncbi Desulfotomaculum reducens MI-16
DHAF138119 ncbi Desulfitobacterium hafniense Y516
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G206
CVIO243365 ncbi Chromobacterium violaceum ATCC 124727
CSP501479 Citreicella sp. SE457
CPSY167879 ncbi Colwellia psychrerythraea 34H7
CKLU431943 ncbi Clostridium kluyveri DSM 5556
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29017
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C6
BVIE269482 ncbi Burkholderia vietnamiensis G47
BTHA271848 ncbi Burkholderia thailandensis E2647
BSP376 Bradyrhizobium sp.7
BSP36773 Burkholderia sp.7
BPUM315750 ncbi Bacillus pumilus SAFR-0327
BPSE320373 ncbi Burkholderia pseudomallei 6687
BPSE320372 ncbi Burkholderia pseudomallei 1710b7
BPSE272560 ncbi Burkholderia pseudomallei K962437
BPET94624 Bordetella petrii7
BPER257313 ncbi Bordetella pertussis Tohama I6
BPAR257311 ncbi Bordetella parapertussis 128226
BOVI236 Brucella ovis6
BMEL359391 ncbi Brucella melitensis biovar Abortus 23086
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M7
BMAL320389 ncbi Burkholderia mallei NCTC 102477
BMAL320388 ncbi Burkholderia mallei SAVP17
BMAL243160 ncbi Burkholderia mallei ATCC 233447
BLIC279010 ncbi Bacillus licheniformis ATCC 145806
BHAL272558 ncbi Bacillus halodurans C-1257
BCLA66692 ncbi Bacillus clausii KSM-K167
BCEN331272 ncbi Burkholderia cenocepacia HI24247
BCEN331271 ncbi Burkholderia cenocepacia AU 10547
BBRO257310 ncbi Bordetella bronchiseptica RB506
BANT592021 ncbi Bacillus anthracis A02486
BANT261594 ncbi Bacillus anthracis Ames Ancestor6
BAMB398577 ncbi Burkholderia ambifaria MC40-67
BAMB339670 ncbi Burkholderia ambifaria AMMD7
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4497
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL037
APLE416269 ncbi Actinobacillus pleuropneumoniae L207
AMET293826 ncbi Alkaliphilus metalliredigens QYMF6
AHYD196024 Aeromonas hydrophila dhakensis7
ABAU360910 ncbi Bordetella avium 197N6


Names of the homologs of the genes in the group in each of these orgs
  G2002   G2001   G2000   EG12626   EG12305   EG12304   EG10248   
YPSE349747 YPSIP31758_1784YPSIP31758_1783YPSIP31758_1782YPSIP31758_4073YPSIP31758_1780YPSIP31758_1781YPSIP31758_4075
YPSE273123 YPTB2272YPTB2273YPTB2274YPTB3840YPTB2276YPTB2275YPTB3842
YPES386656 YPDSF_0788YPDSF_0787YPDSF_0786YPDSF_3367YPDSF_0784YPDSF_0785YPDSF_3369
YPES377628 YPN_1815YPN_1816YPN_1817YPN_3650YPN_1819YPN_1818YPN_3652
YPES360102 YPA_1704YPA_1705YPA_1706YPA_3828YPA_1708YPA_1707YPA_3830
YPES349746 YPANGOLA_A2540YPANGOLA_A2541YPANGOLA_A2542YPANGOLA_A4058YPANGOLA_A2544YPANGOLA_A2543YPANGOLA_A4056
YPES214092 YPO2355YPO2356YPO2357YPO4001YPO2359YPO2358YPO4003
YPES187410 Y1977Y1976Y1975Y3828Y1973Y1974Y3825
YENT393305 YE2125YE2126YE2127YE4081YE2129YE2128YE4083
VVUL216895 VV1_2881VV1_2882VV1_2883VV1_1088VV1_2885VV1_2884VV1_2881
VVUL196600 VV1390VV1389VV1388VV0046VV1386VV1387VV1390
VPAR223926 VP1171VP1170VP1169VP0050VP1167VP1168VP1171
VFIS312309 VFA0309VFA0308VFA0307VFA0307VFA0305VFA0306VFA0309
VEIS391735 VEIS_4121VEIS_4120VEIS_3435VEIS_1299VEIS_4251VEIS_4963VEIS_4591
VCHO345073 VC0395_A1285VC0395_A1286VC0395_A1287VC0395_A2566VC0395_A1289VC0395_A1288VC0395_A1285
VCHO VC1680VC1681VC1682VC0173VC1684VC1683VC1680
TROS309801 TRD_A0699TRD_1279TRD_A0701TRD_1280TRD_1629TRD_A0699
TLET416591 TLET_0202TLET_0854TLET_0073TLET_0855TLET_1503TLET_0648TLET_0071
STYP99287 STM1692STM1693STM1694STM3628STM1696STM1695STM3630
STRO369723 STROP_0217STROP_1671STROP_1671STROP_3819STROP_3820STROP_0216
STHE292459 STH2315STH1108STH2313STH2313STH1111STH1110STH2315
SSP94122 SHEWANA3_2650SHEWANA3_2651SHEWANA3_2652SHEWANA3_2652SHEWANA3_2654SHEWANA3_2653SHEWANA3_2650
SSP644076 SCH4B_2895SCH4B_3822SCH4B_0505SCH4B_3405SCH4B_2892SCH4B_0504SCH4B_2895
SSP292414 TM1040_2686TM1040_0037TM1040_3601TM1040_0036TM1040_2683TM1040_3600TM1040_2686
SSON300269 SSO_1846SSO_1847SSO_1848SSO_3848SSO_1850SSO_1849SSO_3846
SSED425104 SSED_1552SSED_1551SSED_1550SSED_1550SSED_1548SSED_1549SSED_1552
SPRO399741 SPRO_2629SPRO_2630SPRO_2631SPRO_0140SPRO_2633SPRO_2632SPRO_3431
SPEA398579 SPEA_2671SPEA_2672SPEA_2673SPEA_2673SPEA_2675SPEA_2674SPEA_2671
SONE211586 SO_1805SO_1804SO_1803SO_1803SO_1801SO_1802SO_1805
SMEL266834 SMC00786SMC00787SMC00788SMC00788SMC00790SMA2081SMC00786
SMED366394 SMED_0329SMED_0330SMED_0331SMED_0331SMED_5077SMED_5789SMED_0329
SLOI323850 SHEW_2498SHEW_2499SHEW_2500SHEW_2500SHEW_2502SHEW_2501SHEW_2498
SLAC55218 SL1157_0098SL1157_0096SL1157_0095SL1157_0095SL1157_0093SL1157_0094SL1157_0098
SHIGELLA SAPASAPBSAPCDPPCSAPFSAPDDPPA
SHAL458817 SHAL_2758SHAL_2759SHAL_2760SHAL_2760SHAL_2762SHAL_2761SHAL_2758
SGLO343509 SG1506SG1507SG1510SG0062SG1512SG1511SG0060
SFLE373384 SFV_1308SFV_1307SFV_1306SFV_1736SFV_1304SFV_1305SFV_3543
SFLE198214 AAN42910.1AAN42909.1AAN42908.1AAN45028.1AAN42906.1AAN42907.1AAN45030.1
SENT454169 SEHA_C1878SEHA_C1879SEHA_C1880SEHA_C3948SEHA_C1882SEHA_C1881SEHA_C3950
SENT321314 SCH_1685SCH_1686SCH_1687SCH_3559SCH_1689SCH_1688SCH_3561
SENT295319 SPA1192SPA1191SPA1182SPA3485SPA1180SPA1181SPA3487
SENT220341 STY1369STY1368STY1357STY4170STY1355STY1356STY4168
SENT209261 T1597T1598T1608T3887T1610T1609T3885
SDYS300267 SDY_1638SDY_1639SDY_1379SDY_4565SDY_1377SDY_1378SDY_4567
SDEN318161 SDEN_2482SDEN_2483SDEN_2484SDEN_2486SDEN_2485SDEN_2482
SBOY300268 SBO_1768SBO_1769SBO_1770SBO_3541SBO_1772SBO_1771SBO_1768
SBAL402882 SHEW185_1604SHEW185_1603SHEW185_1602SHEW185_1602SHEW185_1600SHEW185_1601SHEW185_1604
SBAL399599 SBAL195_1638SBAL195_1637SBAL195_1636SBAL195_1636SBAL195_1634SBAL195_1635SBAL195_1638
SARE391037 SARE_0256SARE_1663SARE_1663SARE_4209SARE_4210SARE_0255
RXYL266117 RXYL_2424RXYL_3026RXYL_2422RXYL_2422RXYL_3025RXYL_2424
RSPH349102 RSPH17025_3963RSPH17025_3964RSPH17025_3965RSPH17025_3965RSPH17025_3967RSPH17025_3963
RSPH349101 RSPH17029_3969RSPH17029_3970RSPH17029_3971RSPH17029_3971RSPH17029_3973RSPH17029_4157RSPH17029_3969
RSPH272943 RSP_3231RSP_3232RSP_3233RSP_3233RSP_3236RSP_3235RSP_3231
RRUB269796 RRU_A2356RRU_A2357RRU_A2358RRU_A2358RRU_A2360RRU_A2359RRU_A2356
RPOM246200 SPO_2554SPO_1544SPO_1545SPO_1545SPO_2551SPO_2554
RMET266264 RMET_1408RMET_3157RMET_4577RMET_3156RMET_4579RMET_1408
RLEG216596 RL0778RL0779RL0780RL0780RL0782RL0781RL0778
RFER338969 RFER_1949RFER_1953RFER_1952RFER_1952RFER_1950RFER_1951RFER_1949
REUT381666 H16_A3298H16_A3297H16_A2098H16_A2098H16_B2463H16_A1303H16_A2100
RETL347834 RHE_CH00736RHE_CH00737RHE_CH00738RHE_CH00738RHE_CH00740RHE_CH00739RHE_CH00736
PSYR223283 PSPTO_4557PSPTO_4562PSPTO_4563PSPTO_4563PSPTO_4564PSPTO_4559
PSYR205918 PSYR_4235PSYR_4239PSYR_4240PSYR_4240PSYR_4242PSYR_4241PSYR_4236
PSP56811 PSYCPRWF_1526PSYCPRWF_1527PSYCPRWF_1528PSYCPRWF_1528PSYCPRWF_1530PSYCPRWF_1529PSYCPRWF_1526
PSP296591 BPRO_2816BPRO_2812BPRO_2813BPRO_2813BPRO_2815BPRO_2814BPRO_2816
PPUT76869 PPUTGB1_0928PPUTGB1_0924PPUTGB1_0923PPUTGB1_0923PPUTGB1_0921PPUTGB1_0922PPUTGB1_0928
PPUT351746 PPUT_0924PPUT_0920PPUT_0919PPUT_0919PPUT_0917PPUT_0918PPUT_0924
PPUT160488 PP_0885PP_0881PP_0880PP_0880PP_0878PP_0879PP_0885
PPRO298386 PBPRA2441PBPRA2442PBPRA2443PBPRA2443PBPRA2445PBPRA2444PBPRA2441
PMUL272843 PM0911PM0912PM0913PM0238PM0915PM0914PM0236
PMEN399739 PMEN_0841PMEN_0840PMEN_0839PMEN_0839PMEN_0837PMEN_0838PMEN_0845
PLUM243265 PLU2587PLU2588PLU2589PLU0302PLU2591PLU2590PLU0300
PING357804 PING_2192PING_2193PING_2194PING_0564PING_2196PING_2195PING_2192
PHAL326442 PSHAA2051PSHAA2052PSHAA2053PSHAA2053PSHAA2055PSHAA2054PSHAA2051
PFLU220664 PFL_0881PFL_0877PFL_0876PFL_0876PFL_0874PFL_0875PFL_0881
PFLU216595 PFLU0827PFLU0822PFLU0821PFLU0821PFLU0819PFLU0820PFLU0827
PFLU205922 PFL_0816PFL_0812PFL_0811PFL_0811PFL_0809PFL_0810PFL_0816
PENT384676 PSEEN1060PSEEN1056PSEEN1055PSEEN1055PSEEN1053PSEEN1054PSEEN1060
PCRY335284 PCRYO_0759PCRYO_0758PCRYO_0757PCRYO_0757PCRYO_0755PCRYO_0756PCRYO_0759
PATL342610 PATL_3006PATL_3007PATL_3008PATL_3008PATL_3010PATL_3009PATL_3006
PAER208964 PA4500PA4503PA4504PA4504PA4506PA4505PA4502
PAER208963 PA14_58390PA14_58440PA14_58450PA14_58450PA14_58490PA14_58470PA14_58420
OIHE221109 OB2451OB2450OB2449OB2449OB2614OB3069OB2451
OANT439375 OANT_1582OANT_1583OANT_1584OANT_1584OANT_1586OANT_1585OANT_4405
MSUC221988 MS0856MS0855MS0854MS1366MS0852MS0853MS2053
MSP409 M446_1690M446_1691M446_1692M446_1692M446_1694M446_1693M446_1690
MSP400668 MMWYL1_0114MMWYL1_0113MMWYL1_0112MMWYL1_0112MMWYL1_3820MMWYL1_0111MMWYL1_0114
MSP266779 MESO_0067MESO_0066MESO_0065MESO_0065MESO_0063MESO_2384MESO_0067
MLOT266835 MLR5416MLR5417MLR5418MLR5418MLR5420MLL0596MLR5416
LSPH444177 BSPH_0318BSPH_0319BSPH_0320BSPH_0320BSPH_2217BSPH_0316BSPH_0318
KRAD266940 KRAD_2998KRAD_2997KRAD_3861KRAD_3861KRAD_2995KRAD_2998
KPNE272620 GKPORF_B0330GKPORF_B0329GKPORF_B0316GKPORF_B3250GKPORF_B0314GKPORF_B0315GKPORF_B3252
ILOI283942 IL0733IL0734IL0735IL0737IL0736IL0733
HSOM228400 HSM_0943HSM_0942HSM_0941HSM_0939HSM_0940HSM_0943
HSOM205914 HS_0594HS_0593HS_0592HS_0590HS_0591HS_0594
HPYL357544 HPAG1_0300HPAG1_0301HPAG1_0302HPAG1_0302HPAG1_0304HPAG1_0300
HPY HP0298HP0299HP0300HP0300HP0302HP0298
HINF71421 HI_1638HI_1639HI_1640HI_1186HI_1642HI_1641HI_0853
HINF374930 CGSHIEE_05880CGSHIEE_05885CGSHIEE_06120CGSHIEE_06120CGSHIEE_05905CGSHIEE_05900CGSHIEE_07775
HINF281310 NTHI1401NTHI1400NTHI1399NTHI1355NTHI1397NTHI1398NTHI1021
HDUC233412 HD_1230HD_1231HD_1232HD_0313HD_0863HD_1235HD_0215
HACI382638 HAC_0559HAC_0560HAC_0561HAC_0561HAC_0563HAC_0559
GTHE420246 GTNG_0478GTNG_0479GTNG_0480GTNG_0480GTNG_0477GTNG_3282GTNG_0478
ESP42895 ENT638_2171ENT638_2172ENT638_2173ENT638_0186ENT638_2175ENT638_2174ENT638_2107
EFER585054 EFER_1660EFER_1661EFER_1662EFER_3539EFER_1664EFER_1663EFER_3541
ECOO157 SAPASAPBSAPCDPPCSAPFSAPDDPPA
ECOL83334 ECS1871ECS1870ECS1869ECS4422ECS1867ECS1868ECS4424
ECOL585397 ECED1_1509ECED1_1508ECED1_1507ECED1_4221ECED1_1505ECED1_1506ECED1_4223
ECOL585057 ECIAI39_1645ECIAI39_1644ECIAI39_1643ECIAI39_4051ECIAI39_1641ECIAI39_1642ECIAI39_4053
ECOL585056 ECUMN_1599ECUMN_1598ECUMN_1597ECUMN_4052ECUMN_1595ECUMN_1596ECUMN_4055
ECOL585055 EC55989_1456EC55989_1455EC55989_1454EC55989_3993EC55989_1452EC55989_1453EC55989_3996
ECOL585035 ECS88_1440ECS88_1439ECS88_1438ECS88_3962ECS88_1436ECS88_1437ECS88_3964
ECOL585034 ECIAI1_1319ECIAI1_1318ECIAI1_1317ECIAI1_3700ECIAI1_1315ECIAI1_1316ECIAI1_3703
ECOL481805 ECOLC_2331ECOLC_2332ECOLC_2333ECOLC_0173ECOLC_2335ECOLC_2334ECOLC_0171
ECOL469008 ECBD_2323ECBD_2324ECBD_2325ECBD_0194ECBD_2327ECBD_2326ECBD_0192
ECOL439855 ECSMS35_1828ECSMS35_1829ECSMS35_1830ECSMS35_3861ECSMS35_1832ECSMS35_1831ECSMS35_3863
ECOL413997 ECB_01271ECB_01270ECB_01269ECB_03393ECB_01267ECB_01268ECB_03395
ECOL409438 ECSE_1346ECSE_1345ECSE_1344ECSE_3815ECSE_1342ECSE_1343ECSE_3817
ECOL405955 APECO1_457APECO1_456APECO1_455APECO1_2906APECO1_453APECO1_454APECO1_2904
ECOL364106 UTI89_C1571UTI89_C1570UTI89_C1569UTI89_C4080UTI89_C1567UTI89_C1568UTI89_C4082
ECOL362663 ECP_1352ECP_1351ECP_1350ECP_3643ECP_1348ECP_1349ECP_3646
ECOL331111 ECE24377A_1501ECE24377A_1500ECE24377A_1499ECE24377A_4034ECE24377A_1497ECE24377A_1498ECE24377A_4037
ECOL316407 ECK1289:JW1287:B1294ECK1288:JW1286:B1293ECK1287:JW1285:B1292ECK3529:JW3511:B3542ECK1285:JW1283:B1290ECK1286:JW1284:B1291ECK3531:JW3513:B3544
ECOL199310 C1771C1770C1769C4357C1767C1768C4361
ECAR218491 ECA1977ECA1976ECA1975ECA4392ECA1973ECA1974ECA4394
DRED349161 DRED_2454DRED_2453DRED_2452DRED_2452DRED_2451DRED_2454
DHAF138119 DSY0502DSY0503DSY0504DSY4357DSY0646DSY0502
DDES207559 DDE_1185DDE_1184DDE_1183DDE_1183DDE_1182DDE_1185
CVIO243365 CV_1097CV_1098CV_1099CV_1099CV_1101CV_1100CV_1097
CSP501479 CSE45_3619CSE45_2493CSE45_4964CSE45_2494CSE45_3616CSE45_1135CSE45_3619
CPSY167879 CPS_3775CPS_3776CPS_3777CPS_3777CPS_3779CPS_3778CPS_3775
CKLU431943 CKL_1311CKL_1312CKL_1051CKL_1313CKL_1052CKL_1311
CHYD246194 CHY_1128CHY_1129CHY_1130CHY_1130CHY_1127CHY_1126CHY_1128
CDES477974 DAUD_1982DAUD_0386DAUD_0387DAUD_0387DAUD_0388DAUD_1982
BVIE269482 BCEP1808_3130BCEP1808_3129BCEP1808_3128BCEP1808_3128BCEP1808_3126BCEP1808_3127BCEP1808_3130
BTHA271848 BTH_I0220BTH_I0221BTH_I0222BTH_I0222BTH_I0224BTH_I0223BTH_I0220
BSP376 BRADO1743BRADO1742BRADO1741BRADO1741BRADO1739BRADO1740BRADO1743
BSP36773 BCEP18194_B2067BCEP18194_A6391BCEP18194_A6390BCEP18194_A6390BCEP18194_A6388BCEP18194_A6389BCEP18194_B2067
BPUM315750 BPUM_0821BPUM_0822BPUM_0823BPUM_0823BPUM_0820BPUM_1060BPUM_0821
BPSE320373 BURPS668_0243BURPS668_0244BURPS668_0245BURPS668_0245BURPS668_0247BURPS668_0246BURPS668_0243
BPSE320372 BURPS1710B_A0461BURPS1710B_A0462BURPS1710B_A0463BURPS1710B_A0463BURPS1710B_A0465BURPS1710B_A0464BURPS1710B_A0461
BPSE272560 BPSL0249BPSL0250BPSL0251BPSL0251BPSL0253BPSL0252BPSL0249
BPET94624 BPET3079BPET1795BPET2850BPET2850BPET3872BPET0285BPET1794
BPER257313 BP2396BP2395BP2592BP2394BP3859BP2396
BPAR257311 BPP3261BPP3260BPP1445BPP1445BPP3590BPP3261
BOVI236 GBOORF1599GBOORF1595GBOORF1595GBOORFA0552GBOORF1594GBOORF1599
BMEL359391 BAB1_1599BAB1_1598BAB1_1598BAB1_1596BAB2_1052BAB1_1600
BMEL224914 BMEI0433BMEI0435BMEI0436BMEI0436BMEI0438BMEII0206BMEI0433
BMAL320389 BMA10247_3378BMA10247_3377BMA10247_A1048BMA10247_A1048BMA10247_3374BMA10247_3375BMA10247_3378
BMAL320388 BMASAVP1_A2969BMASAVP1_A2970BMASAVP1_0249BMASAVP1_0249BMASAVP1_A2973BMASAVP1_A2972BMASAVP1_A2969
BMAL243160 BMA_3301BMA_3302BMA_A1276BMA_A1276BMA_3305BMA_3304BMA_3301
BLIC279010 BL03046BL03047BL03048BL03048BL03044BL03046
BHAL272558 BH3644BH3643BH3642BH3642BH3645BH0350BH3644
BCLA66692 ABC1240ABC0565ABC1242ABC1242ABC1606ABC0567ABC1240
BCEN331272 BCEN2424_4016BCEN2424_3044BCEN2424_3043BCEN2424_3043BCEN2424_3041BCEN2424_3042BCEN2424_3045
BCEN331271 BCEN_4350BCEN_2430BCEN_2429BCEN_2429BCEN_2427BCEN_2428BCEN_2431
BBRO257310 BB3712BB3711BB2519BB2519BB4025BB3712
BANT592021 BAA_4746BAA_4747BAA_4747BAA_0263BAA_0743BAA_4746
BANT261594 GBAA4729GBAA4731GBAA4731GBAA0235GBAA0660GBAA4729
BAMB398577 BAMMC406_3923BAMMC406_2955BAMMC406_2954BAMMC406_2954BAMMC406_2952BAMMC406_2953BAMMC406_3923
BAMB339670 BAMB_3416BAMB_3089BAMB_3088BAMB_3088BAMB_3086BAMB_3087BAMB_3416
ASAL382245 ASA_2427ASA_2428ASA_2429ASA_0989ASA_2431ASA_2430ASA_2427
APLE434271 APJL_0064APJL_0801APJL_0800APJL_0066APJL_1260APJL_0799APJL_0866
APLE416269 APL_0064APL_0795APL_0794APL_0066APL_1249APL_0793APL_2010
AMET293826 AMET_2909AMET_2908AMET_2006AMET_1878AMET_2064AMET_2909
AHYD196024 AHA_1876AHA_1875AHA_1874AHA_1874AHA_1872AHA_1873AHA_1876
ABAU360910 BAV1159BAV1160BAV1646BAV1646BAV0998BAV1159


Organism features enriched in list (features available for 154 out of the 166 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.004746340112
Arrangment:Singles 0.004877488286
Disease:Bubonic_plague 0.000315966
Disease:Dysentery 0.000315966
Disease:Gastroenteritis 0.00015891013
Endospores:No 3.970e-829211
GC_Content_Range4:0-40 2.177e-1518213
GC_Content_Range4:40-60 1.489e-786224
GC_Content_Range4:60-100 0.003684450145
GC_Content_Range7:30-40 8.976e-918166
GC_Content_Range7:40-50 0.001927943117
GC_Content_Range7:50-60 0.000227543107
GC_Content_Range7:60-70 0.001914548134
Genome_Size_Range5:0-2 9.964e-167155
Genome_Size_Range5:2-4 1.118e-923197
Genome_Size_Range5:4-6 1.889e-2298184
Genome_Size_Range5:6-10 8.113e-62647
Genome_Size_Range9:1-2 1.404e-117128
Genome_Size_Range9:2-3 1.640e-711120
Genome_Size_Range9:3-4 0.00691311277
Genome_Size_Range9:4-5 5.482e-105196
Genome_Size_Range9:5-6 2.709e-94788
Genome_Size_Range9:6-8 1.285e-72538
Gram_Stain:Gram_Neg 4.549e-16129333
Gram_Stain:Gram_Pos 6.182e-718150
Habitat:Multiple 0.001519561178
Motility:No 2.145e-914151
Motility:Yes 1.246e-11106267
Optimal_temp.:35-37 0.0011671913
Oxygen_Req:Anaerobic 1.162e-69102
Oxygen_Req:Facultative 1.052e-1086201
Pathogenic_in:Human 0.008820967213
Shape:Coccus 7.691e-10282
Shape:Rod 8.431e-17133347
Temp._range:Psychrophilic 0.001617079



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 367
Effective number of orgs (counting one per cluster within 468 clusters): 283

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
XAUT78245 ncbi Xanthobacter autotrophicus Py21
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS11
TTUR377629 ncbi Teredinibacter turnerae T79010
TSP1755 Thermoanaerobacter sp.0
TPEN368408 ncbi Thermofilum pendens Hrk 51
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX1
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354051
TCRU317025 ncbi Thiomicrospira crunogena XCL-21
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SGOR29390 Streptococcus gordonii Challis0
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB1
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63011
SDEG203122 ncbi Saccharophagus degradans 2-400
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6391
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP101510 ncbi Rhodococcus jostii RHA11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316057 ncbi Rhodopseudomonas palustris BisB51
RPAL316056 ncbi Rhodopseudomonas palustris BisB180
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RDEN375451 ncbi Roseobacter denitrificans OCh 1140
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSTU379731 ncbi Pseudomonas stutzeri A15010
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2731
PISL384616 ncbi Pyrobaculum islandicum DSM 41841
PINT246198 Prevotella intermedia 170
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCAR338963 ncbi Pelobacter carbinolicus DSM 23801
PAST100379 Onion yellows phytoplasma0
PARC259536 ncbi Psychrobacter arcticus 273-40
PACN267747 ncbi Propionibacterium acnes KPA1712020
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP35761 Nocardioides sp.1
NSP103690 ncbi Nostoc sp. PCC 71201
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
NOCE323261 ncbi Nitrosococcus oceani ATCC 197071
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101521
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16221
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53481
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM10
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLEP272631 ncbi Mycobacterium leprae TN0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT1
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LMON265669 ncbi Listeria monocytogenes 4b F23651
LMON169963 ncbi Listeria monocytogenes EGD-e1
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112621
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LCHO395495 ncbi Leptothrix cholodnii SP-60
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
JSP375286 ncbi Janthinobacterium sp. Marseille1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HNEP81032 Hyphomonas neptunium0
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
HARS204773 ncbi Herminiimonas arsenicoxydans1
GVIO251221 ncbi Gloeobacter violaceus PCC 74211
GOXY290633 ncbi Gluconobacter oxydans 621H0
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH11
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FMAG334413 ncbi Finegoldia magna ATCC 293281
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DSHI398580 ncbi Dinoroseobacter shibae DFL 121
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd31
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DARO159087 ncbi Dechloromonas aromatica RCB1
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E881
CTEP194439 ncbi Chlorobium tepidum TLS1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1011
CPER195103 ncbi Clostridium perfringens ATCC 131241
CPER195102 ncbi Clostridium perfringens 131
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDIF272563 ncbi Clostridium difficile 6300
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto1
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6571
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT441772 ncbi Clostridium botulinum F str. Langeland1
CBOT441771 ncbi Clostridium botulinum A str. Hall1
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193971
CBOT36826 Clostridium botulinum A1
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB150
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER226900 ncbi Bacillus cereus ATCC 145791
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294131
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN11
ASP62977 ncbi Acinetobacter sp. ADP10
ASP62928 ncbi Azoarcus sp. BH720
ASP232721 ncbi Acidovorax sp. JS421
ASP1667 Arthrobacter sp.0
APHA212042 ncbi Anaplasma phagocytophilum HZ0
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232701
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACRY349163 ncbi Acidiphilium cryptum JF-50
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
AAUR290340 ncbi Arthrobacter aurescens TC10
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G2002   G2001   G2000   EG12626   EG12305   EG12304   EG10248   
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
XAUT78245 XAUT_2764
WSUC273121
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TVOL273116 TVN1329
TTUR377629
TSP1755
TPEN368408 TPEN_1634
TPAL243276
TKOD69014
TFUS269800 TFU_1819
TERY203124
TELO197221
TDEN326298
TDEN292415
TDEN243275 TDE_1068
TCRU317025 TCR_1299
TACI273075
SWOL335541
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP321332
SSP321327
SSP1148
SSP1131
SSOL273057
SSAP342451
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SHAE279808 SH1967
SGOR29390
SFUM335543 SFUM_3545
SEPI176280
SEPI176279
SELO269084 SYC0718_C
SDEG203122
SAUR93062 SACOL0998
SAUR93061 SAOUHSC_00930
SAUR426430 NWMN_0863
SAUR418127 SAHV_0988
SAUR367830 SAUSA300_0894
SAUR359787 SAURJH1_1011
SAUR359786 SAURJH9_0992
SAUR282459 SAS0863
SAUR282458 SAR0958
SAUR273036
SAUR196620
SAUR158879 SA0852
SAUR158878 SAV0993
SALA317655
SAGA211110
SAGA208435
SAGA205921
SACI330779 SACI_1035
RTYP257363
RSP101510 RHA1_RO09045
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RPAL316057 RPD_1812
RPAL316056
RPAL316055
RMAS416276
RFEL315456
RDEN375451
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PSTU379731
PSP312153
PSP117
PRUM264731
PPEN278197
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542 P9515ORF_1189
PMAR167540
PMAR167539
PMAR146891
PLUT319225 PLUT_1343
PISL384616 PISL_0562
PINT246198
PGIN242619
PFUR186497 PF1411
PDIS435591
PCAR338963 PCAR_1867
PAST100379
PARC259536
PACN267747
OTSU357244
NWIN323098
NSP387092
NSP35761 NOCA_2402
NSP103690 ALL2011
NSEN222891
NPHA348780 NP3582A
NOCE323261 NOC_2185
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NFAR247156 NFA1670
NEUT335283
NEUR228410
NARO279238
MXAN246197 MXAN_4665
MTUB419947
MTUB336982
MTHE349307
MTHE264732
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSED399549 MSED_1049
MPUL272635
MPNE272634
MPET420662
MPEN272633
MMYC272632
MMOB267748
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407
MMAR267377
MMAG342108
MLEP272631
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_0210
MGEN243273
MFLO265311
MFLA265072 MFLA_1485
MEXT419610
MCAP340047
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MAVI243243
MART243272
MAQU351348
MAER449447
MAEO419665 MAEO_0511
MABS561007
LXYL281090
LWEL386043 LWE0118
LSAK314315 LSA0706
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LPLA220668 LP_1265
LMON265669 LMOF2365_0154
LMON169963 LMO0136
LMES203120
LLAC272623
LLAC272622
LJOH257314 LJ_1526
LINT267671
LINT189518
LINN272626 LIN0183
LHEL405566
LGAS324831 LGAS_0775
LDEL390333 LDB1385
LDEL321956 LBUL_1292
LCHO395495
LCAS321967
LBRE387344 LVIS_1765
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
JSP375286 MMA_3521
IHOS453591
HNEP81032
HMOD498761
HHEP235279
HHAL349124
HBUT415426 HBUT_0606
HARS204773 HEAR3292
GVIO251221 GLL4123
GOXY290633
GFOR411154
GBET391165 GBCGDNIH1_0125
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855 FRANEAN1_3461
FSP106370
FRANT
FPHI484022
FMAG334413 FMG_0271
FJOH376686
FALN326424 FRAAL2818
ERUM302409
ERUM254945
ELIT314225
ECHA205920
ECAN269484
DSP255470
DSP216389
DSHI398580 DSHI_0884
DPSY177439
DOLE96561 DOLE_0941
DNOD246195
DETH243164
DARO159087 DARO_1319
CVES412965
CTRA471473
CTRA471472
CTET212717 CTC_01377
CTEP194439 CT_1364
CSUL444179
CSP78
CRUT413404
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPER289380 CPR_2258
CPER195103 CPF_2555
CPER195102 CPE2273
CPEL335992
CNOV386415
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948 CMAQ_1327
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CJAP155077
CHUT269798
CHOM360107
CGLU196627
CFET360106
CFEL264202
CEFF196164
CDIP257309
CDIF272563
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT536232 CLM_1382
CBOT515621 CLJ_B1267
CBOT508765
CBOT441772 CLI_1311
CBOT441771 CLC_1267
CBOT441770 CLB_1255
CBOT36826 CBO1226
CBLO291272
CBLO203907
CAULO
CABO218497
BTUR314724
BTHE226186
BSP107806
BLON206672 BL1346
BHER314723
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BCER226900 BC_0911
BBUR224326
BBAC264462
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AVAR240292 AVA_0003
AURANTIMONAS
ASP76114 EBA5654
ASP62977
ASP62928
ASP232721 AJS_0689
ASP1667
APHA212042
ANAE240017
AMAR329726
AMAR234826
ALAI441768
AFUL224325
AFER243159 AFE_0121
AEHR187272
ADEH290397
ACRY349163
ACEL351607
ABUT367737
ABOR393595
AAUR290340
AAEO224324


Organism features enriched in list (features available for 341 out of the 367 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.00693331517
Disease:Gastroenteritis 0.0081649313
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00256091111
Disease:Wide_range_of_infections 0.00256091111
Endospores:No 2.682e-6149211
Endospores:Yes 0.00073402053
GC_Content_Range4:0-40 1.563e-15169213
GC_Content_Range4:40-60 0.0000514109224
GC_Content_Range4:60-100 4.699e-662145
GC_Content_Range7:0-30 2.392e-84447
GC_Content_Range7:30-40 6.338e-8125166
GC_Content_Range7:50-60 0.000307247107
GC_Content_Range7:60-70 4.183e-656134
Genome_Size_Range5:0-2 4.391e-18134155
Genome_Size_Range5:2-4 2.776e-7143197
Genome_Size_Range5:4-6 2.126e-2254184
Genome_Size_Range5:6-10 5.833e-81047
Genome_Size_Range9:0-1 3.294e-72727
Genome_Size_Range9:1-2 7.808e-12107128
Genome_Size_Range9:2-3 1.920e-896120
Genome_Size_Range9:4-5 1.117e-63596
Genome_Size_Range9:5-6 1.930e-141988
Genome_Size_Range9:6-8 1.861e-7738
Gram_Stain:Gram_Neg 8.944e-7167333
Gram_Stain:Gram_Pos 0.0005410104150
Habitat:Host-associated 0.0000121144206
Habitat:Multiple 0.006400492178
Motility:No 3.160e-9118151
Motility:Yes 1.780e-10119267
Optimal_temp.:30-37 0.00071281718
Oxygen_Req:Facultative 0.000099297201
Shape:Coccus 1.587e-87082
Shape:Rod 1.817e-16156347
Shape:Sphere 0.00043141819
Shape:Spiral 0.00045362934



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 4
Effective number of orgs (counting one per cluster within 468 clusters): 3

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
TLET416591 ncbi Thermotoga lettingae TMO 0.00172517997
HACI382638 ncbi Helicobacter acinonychis Sheeba 0.00405635076
HPYL357544 ncbi Helicobacter pylori HPAG1 0.00476885216
HPY ncbi Helicobacter pylori 26695 0.00476885216


Names of the homologs of the genes in the group in each of these orgs
  G2002   G2001   G2000   EG12626   EG12305   EG12304   EG10248   
TLET416591 TLET_0202TLET_0854TLET_0073TLET_0855TLET_1503TLET_0648TLET_0071
HACI382638 HAC_0559HAC_0560HAC_0561HAC_0561HAC_0563HAC_0559
HPYL357544 HPAG1_0300HPAG1_0301HPAG1_0302HPAG1_0302HPAG1_0304HPAG1_0300
HPY HP0298HP0299HP0300HP0300HP0302HP0298


Organism features enriched in list (features available for 4 out of the 4 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Gastric_lesions 0.006861111
Disease:Gastric_ulcer 0.006861111
GC_Content_Range7:30-40 0.00640374166
Shape:Spiral 0.0006896334



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GALACTITOLCAT-PWY (galactitol degradation)73680.5480
AST-PWY (arginine degradation II (AST pathway))120890.5250
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951170.5092
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149970.4877
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181220.4865
GLYCOCAT-PWY (glycogen degradation I)2461300.4787
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491300.4718
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491300.4718
PWY-6196 (serine racemization)102750.4692
PWY-5148 (acyl-CoA hydrolysis)2271220.4641
GALACTCAT-PWY (D-galactonate degradation)104750.4604
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251200.4539
GLUCARDEG-PWY (D-glucarate degradation I)152940.4523
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)2121130.4330
SERDEG-PWY (L-serine degradation)3491520.4316
PWY-46 (putrescine biosynthesis III)138860.4304
GALACTARDEG-PWY (D-galactarate degradation I)151910.4301
GLUCONSUPER-PWY (D-gluconate degradation)2291180.4291
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761000.4282
PWY0-901 (selenocysteine biosynthesis I (bacteria))2301180.4267
GLUTDEG-PWY (glutamate degradation II)1941060.4258
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001380.4219
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911040.4182
GLUTAMINDEG-PWY (glutamine degradation I)1911040.4182
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135830.4144
XYLCAT-PWY (xylose degradation I)2171120.4129
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911340.4109
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50440.4099
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961350.4081
PWY0-823 (arginine degradation III (arginine decarboxylase/agmatinase pathway))2451200.4067
PWY-5918 (heme biosynthesis I)2721280.4065
PWY-4041 (γ-glutamyl cycle)2791300.4064
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901330.4056
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135820.4056
THREONINE-DEG2-PWY (threonine degradation II)2141100.4051
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138830.4042



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G2001   G2000   EG12626   EG12305   EG12304   EG10248   
G20020.9998390.9997430.9995260.9996340.99960.999829
G20010.9998230.9996970.9996470.999680.999732
G20000.9997970.9996850.9997320.999635
EG126260.9993670.9994440.999671
EG123050.9997650.9994
EG123040.999332
EG10248



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PAIRWISE BLAST SCORES:

  G2002   G2001   G2000   EG12626   EG12305   EG12304   EG10248   
G20020.0f0-----1.9e-88
G2001-0.0f0-----
G2000--0.0f04.0e-47---
EG12626---0.0f0---
EG12305----0.0f0--
EG12304-----0.0f0-
EG102482.2e-94-----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ABC-8-CPLX (dipeptide ABC transporter) (degree of match pw to cand: 0.400, degree of match cand to pw: 0.286, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9997 0.9993 EG10248 (dppA) DPPA-MONOMER (DppA)
   *in cand* 0.9996 0.9994 EG12626 (dppC) DPPC-MONOMER (DppC)
             0.9996 0.9992 EG12625 (dppB) DPPB-MONOMER (DppB)
             0.9994 0.9991 EG12628 (dppF) DPPF-MONOMER (DppF)
             0.9993 0.9990 EG12627 (dppD) DPPD-MONOMER (DppD)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9993 EG12304 (sapD) SAPD-MONOMER (SapD)
   *in cand* 0.9996 0.9994 EG12305 (sapF) SAPF-MONOMER (SapF)
   *in cand* 0.9998 0.9996 G2000 (sapC) SAPC-MONOMER (SapC)
   *in cand* 0.9998 0.9996 G2001 (sapB) SAPB-MONOMER (SapB)
   *in cand* 0.9997 0.9995 G2002 (sapA) SAPA-MONOMER (SapA)

- ABC-29-CPLX (peptide uptake ABC transporter) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.714, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9997 0.9995 G2002 (sapA) SAPA-MONOMER (SapA)
   *in cand* 0.9998 0.9996 G2000 (sapC) SAPC-MONOMER (SapC)
   *in cand* 0.9998 0.9996 G2001 (sapB) SAPB-MONOMER (SapB)
   *in cand* 0.9997 0.9993 EG12304 (sapD) SAPD-MONOMER (SapD)
   *in cand* 0.9996 0.9994 EG12305 (sapF) SAPF-MONOMER (SapF)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9993 EG10248 (dppA) DPPA-MONOMER (DppA)
   *in cand* 0.9996 0.9994 EG12626 (dppC) DPPC-MONOMER (DppC)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG12304 EG12305 G2000 G2001 G2002 (centered at G2000)
EG10248 EG12626 (centered at EG10248)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G2002   G2001   G2000   EG12626   EG12305   EG12304   EG10248   
200/623221/623214/623221/623221/623243/623204/623
AAVE397945:0:Tyes710711-0--710
ABAC204669:0:Tyes-3468---0-
ABAU360910:0:Tyes160161647647-0160
ACAU438753:0:Tyes-102246352160-
AFER243159:0:Tyes-----0-
AHYD196024:0:Tyes4322014
AMET293826:0:Tyes101910181260-1821019
AORE350688:0:Tyes0-22--0
APER272557:0:Tyes20550---13462055
APLE416269:0:Tyes0731730211847291987
APLE434271:0:Tno070470321167702769
ASAL382245:5:Tyes1384138513860138813871384
ASP232721:2:Tyes---0---
ASP76114:2:Tyes----0--
AVAR240292:3:Tyes--0----
BABO262698:0:Tno-----0-
BABO262698:1:Tno-3220--
BAMB339670:2:Tno0-----0
BAMB339670:3:Tno-32201-
BAMB398577:2:Tno0-----0
BAMB398577:3:Tno-32201-
BAMY326423:0:Tyes2--410-
BANT260799:0:Tno--420042000-4199
BANT261594:2:Tno4140-4141414104024140
BANT568206:2:Tyes--43764376035704375
BANT592021:2:Tno4361-4362436204264361
BBAC360095:0:Tyes--00---
BBRO257310:0:Tyes1201120000-15191201
BCAN483179:0:Tno-----0-
BCAN483179:1:Tno-3220--
BCEN331271:1:Tno0------
BCEN331271:2:Tno-322014
BCEN331272:2:Tyes0------
BCEN331272:3:Tyes-322014
BCER226900:1:Tyes----0--
BCER288681:0:Tno--4072407203984071
BCER315749:1:Tyes----01-
BCER405917:1:Tyes----2660-
BCER572264:1:Tno----0360-
BCLA66692:0:Tyes688069069010682688
BHAL272558:0:Tyes3353335233513351335403353
BHEN283166:0:Tyes--00---
BJAP224911:0:Fyes-01844184457122322-
BLIC279010:0:Tyes2344-02
BLON206672:0:Tyes-0-----
BMAL243160:0:Tno--00---
BMAL243160:1:Tno01--320
BMAL320388:0:Tno--00---
BMAL320388:1:Tno01--430
BMAL320389:0:Tyes--00---
BMAL320389:1:Tyes43--014
BMEL224914:0:Tno-----0-
BMEL224914:1:Tno02335-0
BMEL359391:0:Tno-----0-
BMEL359391:1:Tno-3220-4
BOVI236:0:Tyes----0--
BOVI236:1:Tyes2-11-02
BPAR257311:0:Tno1710170900-20371710
BPER257313:0:Tyes211950-13512
BPET94624:0:Tyes2816152525862586363301524
BPSE272560:1:Tyes0122430
BPSE320372:1:Tno0122430
BPSE320373:1:Tno0122430
BPUM315750:0:Tyes123302601
BQUI283165:0:Tyes--00---
BSP36773:1:Tyes0-----0
BSP36773:2:Tyes-32201-
BSP376:0:Tyes4322014
BSUB:0:Tyes---310-
BSUI204722:0:Tyes-----0-
BSUI204722:1:Tyes-3220--
BSUI470137:0:Tno-----0-
BSUI470137:1:Tno-2110--
BTHA271848:1:Tno0122430
BTHU281309:1:Tno--36323632013631
BTHU412694:1:Tno----0388-
BTRI382640:1:Tyes--00---
BVIE269482:7:Tyes4322014
BWEI315730:4:Tyes----01-
BXEN266265:0:Tyes--00---
BXEN266265:1:Tyes0------
CACE272562:1:Tyes----01-
CBEI290402:0:Tyes0-----0
CBOT36826:1:Tno-0-----
CBOT441770:0:Tyes-0-----
CBOT441771:0:Tno-0-----
CBOT441772:1:Tno-0-----
CBOT498213:1:Tno-0--1930--
CBOT515621:2:Tyes-0-----
CBOT536232:0:Tno-0-----
CDES477974:0:Tyes1569011-21569
CHYD246194:0:Tyes2344102
CKLU431943:1:Tyes2602610262-1260
CKOR374847:0:Tyes0413-414-415412
CMAQ397948:0:Tyes-----0-
CPER195102:1:Tyes0------
CPER195103:0:Tno0------
CPER289380:3:Tyes0------
CPSY167879:0:Tyes0122430
CSAL290398:0:Tyes0----16960
CSP501479:4:Fyes--0----
CSP501479:7:Fyes3---0-3
CSP501479:8:Fyes-1338-1339-0-
CTEP194439:0:Tyes---0---
CTET212717:0:Tyes--0----
CVIO243365:0:Tyes0122430
DARO159087:0:Tyes-----0-
DDES207559:0:Tyes3211-03
DGEO319795:1:Tyes012---0
DHAF138119:0:Tyes0123896-1450
DOLE96561:0:Tyes-----0-
DRAD243230:3:Tyes327100--327
DRED349161:0:Tyes3211-03
DSHI398580:5:Tyes-----0-
DVUL882:1:Tyes--00---
ECAR218491:0:Tyes4322467012469
ECOL199310:0:Tno4322548012552
ECOL316407:0:Tno4322437012435
ECOL331111:6:Tno4322443012446
ECOL362663:0:Tno4322294012297
ECOL364106:1:Tno4322502012504
ECOL405955:2:Tyes4322317012319
ECOL409438:6:Tyes4322515012517
ECOL413997:0:Tno4322138012140
ECOL439855:4:Tno0121968431971
ECOL469008:0:Tno2124212521262212821270
ECOL481805:0:Tno2161216221632216521640
ECOL585034:0:Tno4322344012347
ECOL585035:0:Tno4322432012434
ECOL585055:0:Tno4322494012497
ECOL585056:2:Tno4322451012454
ECOL585057:0:Tno4322399012401
ECOL585397:0:Tno4322635012637
ECOL83334:0:Tno4322617012619
ECOLI:0:Tno4322296012298
ECOO157:0:Tno0122294432296
EFAE226185:3:Tyes----02077-
EFER585054:1:Tyes0121877431879
ESP42895:1:Tyes2008200920100201220111944
FALN326424:0:Tyes----0--
FMAG334413:1:Tyes-----0-
FNOD381764:0:Tyes----01-
FNUC190304:0:Tyes0122--0
FSP1855:0:Tyes-----0-
GBET391165:0:Tyes0------
GKAU235909:1:Tyes--00---
GMET269799:1:Tyes--385385-0383
GSUL243231:0:Tyes--00-1186-
GTHE420246:1:Tyes1233027621
GURA351605:0:Tyes--34034001-
GVIO251221:0:Tyes-----0-
HACI382638:1:Tyes01224-0
HARS204773:0:Tyes---0---
HAUR316274:2:Tyes01-2-19010
HBUT415426:0:Tyes-----0-
HCHE349521:0:Tyes2-01748-17472
HDUC233412:0:Tyes894895896925708970
HINF281310:0:Tyes3263253242863223230
HINF374930:0:Tyes01383832335
HINF71421:0:Tno7687697703237727710
HMAR272569:8:Tyes-----0163
HMUK485914:1:Tyes0-1380--3220
HPY:0:Tno01224-0
HPYL357544:1:Tyes01224-0
HPYL85963:0:Tno01--3-0
HSAL478009:4:Tyes149----0149
HSOM205914:1:Tyes432-014
HSOM228400:0:Tno432-014
HSP64091:2:Tno147----0147
HWAL362976:1:Tyes955----0955
ILOI283942:0:Tyes012-430
JSP290400:1:Tyes-02117211712682119-
JSP375286:0:Tyes-0-----
KPNE272620:2:Tyes161522898012900
KRAD266940:2:Fyes88788800-890887
LBRE387344:2:Tyes----0--
LDEL321956:0:Tyes----0--
LDEL390333:0:Tyes----0--
LGAS324831:0:Tyes----0--
LINN272626:1:Tno-0-----
LINT363253:3:Tyes--00---
LJOH257314:0:Tyes----0--
LMON169963:0:Tno-0-----
LMON265669:0:Tyes-0-----
LPLA220668:0:Tyes----0--
LSAK314315:0:Tyes----0--
LSPH444177:1:Tyes2344188702
LWEL386043:0:Tyes-0-----
MACE188937:0:Tyes327132743470--2509
MAEO419665:0:Tyes-0-----
MBAR269797:1:Tyes4--0---
MFLA265072:0:Tyes---0---
MGIL350054:3:Tyes-100---
MHUN323259:0:Tyes------0
MLAB410358:0:Tyes0-----1
MLOT266835:2:Tyes3753375437553755375703753
MMAZ192952:0:Tyes---03--
MSED399549:0:Tyes-----0-
MSME246196:0:Tyes4436172--01-
MSP164756:1:Tno-011-545-
MSP164757:0:Tno-011-552-
MSP189918:2:Tyes-011-560-
MSP266779:3:Tyes4322023384
MSP400668:0:Tyes3211375703
MSP409:2:Tyes0122430
MSUC221988:0:Tyes432522011229
MVAN350058:0:Tyes-32993300330001-
MXAN246197:0:Tyes-----0-
NFAR247156:2:Tyes-----0-
NOCE323261:1:Tyes-0-----
NPHA348780:2:Tyes---0---
NSP103690:6:Tyes--0----
NSP35761:1:Tyes-----0-
OANT439375:4:Tyes------0
OANT439375:5:Tyes012243-
OCAR504832:0:Tyes--1100-
OIHE221109:0:Tyes21001666212
PABY272844:0:Tyes--00-610-
PAER178306:0:Tyes----15030-
PAER208963:0:Tyes0344652
PAER208964:0:Tno0344652
PARS340102:0:Tyes----7570518
PATL342610:0:Tyes0122430
PCAR338963:0:Tyes---0---
PCRY335284:1:Tyes4322014
PENT384676:0:Tyes7322017
PFLU205922:0:Tyes7322017
PFLU216595:1:Tyes8322018
PFLU220664:0:Tyes7322017
PFUR186497:0:Tyes-----0-
PHAL326442:1:Tyes0122430
PHOR70601:0:Tyes0----6310
PING357804:0:Tyes1519152015210152315221519
PISL384616:0:Tyes----0--
PLUM243265:0:Fyes2338233923402234223410
PLUT319225:0:Tyes---0---
PMAR167542:0:Tyes-0-----
PMEN399739:0:Tyes4322018
PMOB403833:0:Tyes-202--10-
PMUL272843:1:Tyes67567667726796780
PNAP365044:8:Tyes-011---
PPRO298386:2:Tyes0122430
PPUT160488:0:Tno7322017
PPUT351746:0:Tyes7322017
PPUT76869:0:Tno7322017
PSP296591:2:Tyes4011324
PSP56811:2:Tyes0122430
PSYR205918:0:Tyes0455761
PSYR223283:2:Tyes0566-72
PTHE370438:0:Tyes0-----0
RCAS383372:0:Tyes-27532752275213520-
RETL347834:5:Tyes0122430
REUT264198:3:Tyes-17876841786-0686
REUT381666:1:Tyes----0--
REUT381666:2:Tyes19291928754754-0756
RFER338969:1:Tyes0433120
RLEG216596:6:Tyes0122430
RMET266264:1:Tyes--0--2-
RMET266264:2:Tyes01738-1737--0
RPAL258594:0:Tyes-263-0--
RPAL316057:0:Tyes-----0-
RPAL316058:0:Tyes-38490-3--
RPOM246200:1:Tyes985011982-985
RRUB269796:1:Tyes0122430
RSOL267608:1:Tyes01-1513-5200
RSP101510:2:Fyes-----0-
RSP357808:0:Tyes----23690-
RSPH272943:3:Tyes0122430
RSPH349101:0:Tno-----0-
RSPH349101:1:Tno01224-0
RSPH349102:4:Tyes01224-0
RXYL266117:0:Tyes259800-5972
SACI330779:0:Tyes-----0-
SACI56780:0:Tyes--00-189-
SARE391037:0:Tyes-113831383384438450
SAUR158878:1:Tno----0--
SAUR158879:1:Tno----0--
SAUR282458:0:Tno----0--
SAUR282459:0:Tno----0--
SAUR359786:1:Tno----0--
SAUR359787:1:Tno----0--
SAUR367830:3:Tno----0--
SAUR418127:0:Tyes----0--
SAUR426430:0:Tno----0--
SAUR93061:0:Fno----0--
SAUR93062:1:Tno----0--
SAVE227882:1:Fyes----02516-
SBAL399599:3:Tyes4322014
SBAL402882:1:Tno4322014
SBOY300268:1:Tyes0121688430
SCO:2:Fyes-2436-243710-
SDEN318161:0:Tyes012-430
SDYS300267:1:Tyes24224322960012962
SELO269084:0:Tyes0------
SENT209261:0:Tno0172194982192
SENT220341:0:Tno111022562012560
SENT295319:0:Tno9822216012218
SENT321314:2:Tno0121905431907
SENT454169:2:Tno0121988431990
SERY405948:0:Tyes-1--587-0
SFLE198214:0:Tyes4322178012180
SFLE373384:0:Tno432402012120
SFUM335543:0:Tyes-----0-
SGLO343509:3:Tyes1489149014932149514940
SHAE279808:0:Tyes----0--
SHAL458817:0:Tyes0122430
SHIGELLA:0:Tno4322458012456
SLAC55218:1:Fyes5322015
SLOI323850:0:Tyes0122430
SMAR399550:0:Tyes---1-0-
SMED366394:1:Tyes----0637-
SMED366394:3:Tyes0122--0
SMEL266834:0:Tyes-----0-
SMEL266834:2:Tyes01224-0
SONE211586:1:Tyes4322014
SPEA398579:0:Tno0122430
SPRO399741:1:Tyes2541254225430254525443357
SSED425104:0:Tyes4322014
SSON300269:1:Tyes0121910431908
SSP292414:1:Tyes--1--0-
SSP292414:2:Tyes26921-02689-2692
SSP387093:0:Tyes-0--32-
SSP644076:2:Fyes--1--0-
SSP644076:3:Fyes-0-----
SSP644076:6:Fyes3--5050-3
SSP94122:1:Tyes0122430
STHE292459:0:Tyes1230012281228321230
STRO369723:0:Tyes-114541454358835890
STYP99287:1:Tyes0121928431930
TCRU317025:0:Tyes-0-----
TDEN243275:0:Tyes-----0-
TFUS269800:0:Tyes----0--
TLET416591:0:Tyes131797279814515820
TMAR243274:0:Tyes10721071--016551072
TPEN368408:1:Tyes----0--
TPET390874:0:Tno-741--0825740
TPSE340099:0:Tyes3---01-
TROS309801:0:Tyes0-2---0
TROS309801:1:Tyes-0-1-346-
TSP28240:0:Tyes780781--0184780
TTEN273068:0:Tyes12411240--018191241
TTHE262724:1:Tyes0122--0
TTHE300852:2:Tyes013012--0
TVOL273116:0:Tyes-----0-
UMET351160:0:Tyes-3-201-
VCHO:0:Tyes1541154215430154515441541
VCHO345073:1:Tno0121217430
VEIS391735:1:Tyes2798279721220292836293266
VFIS312309:1:Tyes4322014
VPAR223926:1:Tyes1159115811570115511561159
VVUL196600:2:Tyes1389138813870138513861389
VVUL216895:1:Tno1697169816990170117001697
XAUT78245:1:Tyes-----0-
YENT393305:1:Tyes0121923431925
YPES187410:5:Tno4321871011868
YPES214092:3:Tno0121601431603
YPES349746:2:Tno0121482431481
YPES360102:3:Tyes0122154432156
YPES377628:2:Tno0121869431871
YPES386656:2:Tno4322586012588
YPSE273123:2:Tno0121567431569
YPSE349747:2:Tno4322265012267



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