CANDIDATE ID: 119

CANDIDATE ID: 119

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9947633e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    2.8571429e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7342 (yphF) (b2548)
   Products of gene:
     - G7342-MONOMER (YphF)
     - ABC-60-CPLX (YphD/YphE/YphF ABC transporter)

- G7341 (yphE) (b2547)
   Products of gene:
     - YPHE-MONOMER (YphE)
     - ABC-60-CPLX (YphD/YphE/YphF ABC transporter)

- EG11959 (alsA) (b4087)
   Products of gene:
     - YJCW-MONOMER (AlsA)
     - ABC-42-CPLX (D-allose ABC transporter)
       Reactions:
        D-allose[periplasmic space] + ATP + H2O  ->  D-allose[cytosol] + ADP + phosphate

- EG11958 (alsC) (b4086)
   Products of gene:
     - YJCV-MONOMER (AlsC)
     - ABC-42-CPLX (D-allose ABC transporter)
       Reactions:
        D-allose[periplasmic space] + ATP + H2O  ->  D-allose[cytosol] + ADP + phosphate

- EG10814 (rbsA) (b3749)
   Products of gene:
     - RBSA-MONOMER (RbsA)
     - ABC-28-CPLX (ribose ABC transporter)
       Reactions:
        ATP + beta-D-ribopyranose[periplasmic space] + H2O  ->  ADP + phosphate + beta-D-ribopyranose[cytosol]

- EG10592 (mglA) (b2149)
   Products of gene:
     - MGLA-MONOMER (MglA)
     - ABC-18-CPLX (galactose ABC transporter)
       Reactions:
        ATP + beta-D-galactose[periplasmic space] + H2O  ->  ADP + phosphate + beta-D-galactose[cytosol]

- EG10059 (araH) (b1898 (obsolete))
   Products of gene:
     - ARAH-MONOMER (high-affinity L-arabinose transport protein (ABC superfamily, membrane))
     - ABC-2-CPLX (arabinose ABC transporter)
       Reactions:
        alpha-L-arabinopyranose[periplasmic space] + ATP + H2O  ->  alpha-L-arabinopyranose[cytosol] + phosphate + ADP



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 151
Effective number of orgs (counting one per cluster within 468 clusters): 97

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317587
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329537
YPES386656 ncbi Yersinia pestis Pestoides F7
YPES377628 ncbi Yersinia pestis Nepal5167
YPES360102 ncbi Yersinia pestis Antiqua7
YPES349746 ncbi Yersinia pestis Angola7
YPES214092 ncbi Yersinia pestis CO927
YPES187410 ncbi Yersinia pestis KIM 107
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80817
VVUL216895 ncbi Vibrio vulnificus CMCP67
VVUL196600 ncbi Vibrio vulnificus YJ0167
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106337
VFIS312309 ncbi Vibrio fischeri ES1146
VEIS391735 ncbi Verminephrobacter eiseniae EF01-27
VCHO345073 ncbi Vibrio cholerae O3957
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169617
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB47
TSP28240 Thermotoga sp.7
TSP1755 Thermoanaerobacter sp.7
TPET390874 ncbi Thermotoga petrophila RKU-17
TMAR243274 ncbi Thermotoga maritima MSB87
TLET416591 ncbi Thermotoga lettingae TMO6
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
STHE292459 ncbi Symbiobacterium thermophilum IAM 148637
SSON300269 ncbi Shigella sonnei Ss0467
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153056
SPRO399741 ncbi Serratia proteamaculans 5687
SPEA398579 ncbi Shewanella pealeana ATCC 7003457
SMEL266834 ncbi Sinorhizobium meliloti 10217
SMED366394 ncbi Sinorhizobium medicae WSM4197
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SHAL458817 ncbi Shewanella halifaxensis HAW-EB47
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14356
SGLO343509 ncbi Sodalis glossinidius morsitans6
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23387
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SCO ncbi Streptomyces coelicolor A3(2)6
SBOY300268 ncbi Shigella boydii Sb2277
SAVE227882 ncbi Streptomyces avermitilis MA-46807
SAGA211110 ncbi Streptococcus agalactiae NEM3166
SAGA208435 ncbi Streptococcus agalactiae 2603V/R6
SAGA205921 ncbi Streptococcus agalactiae A9096
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99417
RSP101510 ncbi Rhodococcus jostii RHA16
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38417
RFER338969 ncbi Rhodoferax ferrireducens T1187
REUT264198 ncbi Ralstonia eutropha JMP1347
RETL347834 ncbi Rhizobium etli CFN 427
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30007
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a7
PSP117 Pirellula sp.6
PPRO298386 ncbi Photobacterium profundum SS97
PMUL272843 ncbi Pasteurella multocida multocida Pm707
PING357804 ncbi Psychromonas ingrahamii 377
PFLU220664 ncbi Pseudomonas fluorescens Pf-56
PFLU216595 ncbi Pseudomonas fluorescens SBW257
PFLU205922 ncbi Pseudomonas fluorescens Pf0-17
OIHE221109 ncbi Oceanobacillus iheyensis HTE8317
OANT439375 ncbi Ochrobactrum anthropi ATCC 491887
MTHE264732 ncbi Moorella thermoacetica ATCC 390737
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E7
MSP400668 ncbi Marinomonas sp. MWYL16
MLOT266835 ncbi Mesorhizobium loti MAFF3030997
LLAC272623 ncbi Lactococcus lactis lactis Il14037
LCHO395495 ncbi Leptothrix cholodnii SP-66
LCAS321967 ncbi Lactobacillus casei ATCC 3346
LACI272621 ncbi Lactobacillus acidophilus NCFM6
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785787
JSP290400 ncbi Jannaschia sp. CCS17
HSOM228400 ncbi Haemophilus somnus 23367
HMOD498761 ncbi Heliobacterium modesticaldum Ice16
HINF71421 ncbi Haemophilus influenzae Rd KW207
HINF374930 ncbi Haemophilus influenzae PittEE7
HINF281310 ncbi Haemophilus influenzae 86-028NP7
HCHE349521 ncbi Hahella chejuensis KCTC 23966
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-27
GKAU235909 ncbi Geobacillus kaustophilus HTA4267
ESP42895 Enterobacter sp.7
EFER585054 ncbi Escherichia fergusonii ATCC 354697
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O17
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10436
DSHI398580 ncbi Dinoroseobacter shibae DFL 126
CVIO243365 ncbi Chromobacterium violaceum ATCC 124727
CTET212717 ncbi Clostridium tetani E887
CPHY357809 ncbi Clostridium phytofermentans ISDg7
CPER195103 ncbi Clostridium perfringens ATCC 131246
CPER195102 ncbi Clostridium perfringens 136
CNOV386415 ncbi Clostridium novyi NT6
CDIF272563 ncbi Clostridium difficile 6307
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6577
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B6
BXEN266265 ncbi Burkholderia xenovorans LB4007
BWEI315730 ncbi Bacillus weihenstephanensis KBAB47
BVIE269482 ncbi Burkholderia vietnamiensis G47
BTHU412694 ncbi Bacillus thuringiensis Al Hakam7
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-277
BTHA271848 ncbi Burkholderia thailandensis E2647
BSUI470137 ncbi Brucella suis ATCC 234456
BSUI204722 ncbi Brucella suis 13306
BSUB ncbi Bacillus subtilis subtilis 1687
BSP36773 Burkholderia sp.7
BPUM315750 ncbi Bacillus pumilus SAFR-0327
BPSE320373 ncbi Burkholderia pseudomallei 6686
BPSE320372 ncbi Burkholderia pseudomallei 1710b6
BPSE272560 ncbi Burkholderia pseudomallei K962436
BLIC279010 ncbi Bacillus licheniformis ATCC 145807
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1106
BHAL272558 ncbi Bacillus halodurans C-1257
BCER572264 ncbi Bacillus cereus 03BB1027
BCER405917 Bacillus cereus W7
BCER315749 ncbi Bacillus cytotoxicus NVH 391-987
BCER288681 ncbi Bacillus cereus E33L7
BCER226900 ncbi Bacillus cereus ATCC 145797
BCEN331272 ncbi Burkholderia cenocepacia HI24247
BCEN331271 ncbi Burkholderia cenocepacia AU 10547
BCAN483179 ncbi Brucella canis ATCC 233656
BANT592021 ncbi Bacillus anthracis A02487
BANT568206 ncbi Bacillus anthracis CDC 6847
BANT261594 ncbi Bacillus anthracis Ames Ancestor7
BANT260799 ncbi Bacillus anthracis Sterne7
BAMY326423 ncbi Bacillus amyloliquefaciens FZB427
BAMB398577 ncbi Burkholderia ambifaria MC40-67
BAMB339670 ncbi Burkholderia ambifaria AMMD7
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4497
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL037
APLE416269 ncbi Actinobacillus pleuropneumoniae L207
AMET293826 ncbi Alkaliphilus metalliredigens QYMF6
AHYD196024 Aeromonas hydrophila dhakensis7


Names of the homologs of the genes in the group in each of these orgs
  G7342   G7341   EG11959   EG11958   EG10814   EG10592   EG10059   
YPSE349747 YPSIP31758_1507YPSIP31758_2466YPSIP31758_0813YPSIP31758_4029YPSIP31758_2466YPSIP31758_2466YPSIP31758_1883
YPSE273123 YPTB1522YPTB1523YPTB3230YPTB3806YPTB1523YPTB1523YPTB2176
YPES386656 YPDSF_1913YPDSF_1469YPDSF_0556YPDSF_3327YPDSF_1469YPDSF_1469YPDSF_0557
YPES377628 YPN_2095YPN_2471YPN_3156YPN_3612YPN_2471YPN_2471YPN_1726
YPES360102 YPA_1996YPA_0803YPA_0306YPA_3791YPA_0803YPA_0803YPA_1617
YPES349746 YPANGOLA_A1761YPANGOLA_A3018YPANGOLA_A0157YPANGOLA_A4097YPANGOLA_A3018YPANGOLA_A3018YPANGOLA_A2263
YPES214092 YPO2501YPO1508YPO0958YPO3963YPO1508YPO1508YPO2257
YPES187410 Y1687Y2661Y3345Y3866Y2661Y2661Y2098
YENT393305 YE2815YE2814YE2814YE0010YE0009YE2814YE2005
VVUL216895 VV2_0064VV2_0062VV2_0062VV2_0063VV2_0062VV2_1325VV2_0063
VVUL196600 VVA0571VVA0162VVA0162VVA0570VVA0569VVA0162VVA0570
VPAR223926 VPA1084VPA1672VPA1086VPA1085VPA1086VPA1086VPA1671
VFIS312309 VF1447VF1445VF1446VF1445VF1445VF1446
VEIS391735 VEIS_1480VEIS_1088VEIS_1088VEIS_2045VEIS_1088VEIS_0061VEIS_3775
VCHO345073 VC0395_0008VC0395_A0944VC0395_A0944VC0395_0009VC0395_0010VC0395_A0944VC0395_0009
VCHO VCA0130VC1327VC1327VCA0129VCA0128VC1327VCA0129
TTEN273068 TTE0765TTE0763TTE0763TTE0764TTE0204TTE0763TTE0764
TSP28240 TRQ2_0833TRQ2_0832TRQ2_0975TRQ2_0974TRQ2_0975TRQ2_0975TRQ2_0835
TSP1755 TETH514_0166TETH514_0989TETH514_0164TETH514_0165TETH514_0164TETH514_0157TETH514_0990
TPET390874 TPET_1794TPET_0809TPET_0809TPET_1793TPET_0809TPET_0809TPET_0812
TMAR243274 TM_0958TM_0115TM_0115TM_0955TM_0956TM_0956TM_0112
TLET416591 TLET_0359TLET_0184TLET_0185TLET_1327TLET_1327TLET_0358
STYP99287 STM2190STM2189STM3882STM3883STM3882STM2189STM3883
STHE292459 STH2342STH2341STH2341STH2340STH2341STH2341STH2340
SSON300269 SSO_2631SSO_2630SSO_2205SSO_3920SSO_3919SSO_2205SSO_1219
SSAP342451 SSP1392SSP1394SSP1393SSP1394SSP1394SSP1393
SPRO399741 SPRO_4229SPRO_4228SPRO_1029SPRO_4899SPRO_4900SPRO_1564SPRO_2247
SPEA398579 SPEA_0517SPEA_2284SPEA_2284SPEA_0516SPEA_0515SPEA_0515SPEA_0516
SMEL266834 SMB21377SMC02325SMB21376SMC02772SMC02325SMB20713SMB20506
SMED366394 SMED_4769SMED_0226SMED_4768SMED_5745SMED_0226SMED_4267SMED_3602
SHIGELLA MGLBYPHEMGLARBSCMGLAMGLAARAH
SHAL458817 SHAL_0581SHAL_2010SHAL_2010SHAL_0580SHAL_0579SHAL_0579SHAL_0580
SHAE279808 SH0179SH0177SH0178SH0177SH0177SH0178
SGLO343509 SG0963SG0964SG0964SG0613SG0964SG0964
SFLE373384 SFV_2596SFV_2595SFV_2224SFV_3749SFV_3973SFV_2224SFV_1942
SFLE198214 AAN43756.1AAN44092.1AAN43755.1AAN45272.1AAN43755.1AAN43755.1AAN43497.1
SERY405948 SACE_5660SACE_5659SACE_5659SACE_1882SACE_5659SACE_5659SACE_5660
SENT454169 SEHA_C2425SEHA_C2424SEHA_C4215SEHA_C4216SEHA_C4215SEHA_C2424SEHA_C4216
SENT321314 SCH_2206SCH_3795SCH_3795SCH_3796SCH_3795SCH_3795SCH_3796
SENT220341 STY2424STY3896STY3895STY3896STY3896STY3895
SENT209261 T0665T3637T3636T3637T3637T3636
SCO SCO2747SCO2746SCO2405SCO2747SCO2746SCO2746
SBOY300268 SBO_2574SBO_2573SBO_2178SBO_3764SBO_3575SBO_2178SBO_1107
SAVE227882 SAV971SAV5319SAV7416SAV5318SAV7416SAV5319SAV968
SAGA211110 GBS0113GBS0115GBS0114GBS0115GBS0115GBS0114
SAGA208435 SAG_0114SAG_0116SAG_0115SAG_0116SAG_0116SAG_0115
SAGA205921 SAK_0166SAK_0168SAK_0167SAK_0168SAK_0168SAK_0167
RXYL266117 RXYL_0948RXYL_0946RXYL_3003RXYL_3002RXYL_0946RXYL_0946RXYL_3002
RSP101510 RHA1_RO00819RHA1_RO04085RHA1_RO04085RHA1_RO00821RHA1_RO04085RHA1_RO00821
RLEG216596 PRL90225PRL110412RL2449RL1746RL4654RL4654RL4229
RFER338969 RFER_3131RFER_3129RFER_3129RFER_0439RFER_3129RFER_3129RFER_0439
REUT264198 REUT_B4136REUT_A1653REUT_A1653REUT_A1652REUT_A1653REUT_A1653REUT_B4134
RETL347834 RHE_CH02400RHE_CH03694RHE_PB00077RHE_CH01211RHE_CH03989RHE_CH03989RHE_CH03693
PSYR223283 PSPTO_2399PSPTO_2368PSPTO_3489PSPTO_3488PSPTO_3489PSPTO_3489PSPTO_2640
PSYR205918 PSYR_0776PSYR_2152PSYR_3264PSYR_2570PSYR_3264PSYR_3264PSYR_2373
PSP117 RB5973RB3496RB3496RB3497RB3496RB3496
PPRO298386 PBPRB1559PBPRB1871PBPRB1871PBPRB1558PBPRB1557PBPRB1871PBPRB1558
PMUL272843 PM1325PM1039PM1326PM0154PM0155PM1039PM0154
PING357804 PING_0343PING_2787PING_0341PING_0342PING_0341PING_0341PING_0342
PFLU220664 PFL_2593PFL_2594PFL_2594PFL_2595PFL_2594PFL_2594
PFLU216595 PFLU3727PFLU2373PFLU3119PFLU3994PFLU2584PFLU2584PFLU4682
PFLU205922 PFL_1919PFL_4140PFL_1920PFL_4139PFL_4140PFL_4140PFL_4139
OIHE221109 OB2572OB2574OB2574OB2573OB2574OB2574OB2573
OANT439375 OANT_0292OANT_3347OANT_0291OANT_4066OANT_3347OANT_3347OANT_0290
MTHE264732 MOTH_0612MOTH_0613MOTH_0613MOTH_0614MOTH_0613MOTH_0613MOTH_0614
MSUC221988 MS1612MS0642MS0642MS0199MS0062MS0642MS0061
MSP400668 MMWYL1_3110MMWYL1_3109MMWYL1_1986MMWYL1_3108MMWYL1_1986MMWYL1_1987
MLOT266835 MLL7668MLL1016MLL5705MLL2145MLL3598MLL5657MLL1013
LLAC272623 L82310L84240L84240L83296L84240L84240L83296
LCHO395495 LCHO_0841LCHO_2211LCHO_3312LCHO_3198LCHO_3312LCHO_3312
LCAS321967 LSEI_0310LSEI_0308LSEI_0309LSEI_0308LSEI_0308LSEI_0309
LACI272621 LBA1481LBA1483LBA1482LBA1483LBA1483LBA1482
KPNE272620 GKPORF_B0794GKPORF_B1873GKPORF_B4919GKPORF_B3497GKPORF_B3496GKPORF_B1873GKPORF_B1556
JSP290400 JANN_3087JANN_3088JANN_3088JANN_3089JANN_2595JANN_3088JANN_3092
HSOM228400 HSM_0556HSM_0557HSM_0557HSM_0558HSM_0090HSM_0104HSM_0091
HMOD498761 HM1_2420HM1_2418HM1_2419HM1_2418HM1_2418HM1_2419
HINF71421 HI_0504HI_0823HI_0823HI_0503HI_0502HI_0823HI_0503
HINF374930 CGSHIEE_00470CGSHIEE_07945CGSHIEE_07945CGSHIEE_00475CGSHIEE_00480CGSHIEE_07945CGSHIEE_00475
HINF281310 NTHI0632NTHI0988NTHI0630NTHI0631NTHI0630NTHI0988NTHI0631
HCHE349521 HCH_02469HCH_01167HCH_02470HCH_01167HCH_01167HCH_02470
GTHE420246 GTNG_3170GTNG_3172GTNG_3172GTNG_3171GTNG_3172GTNG_3172GTNG_3171
GKAU235909 GK1896GK3228GK3228GK3227GK3228GK1894GK3227
ESP42895 ENT638_2750ENT638_2749ENT638_0289ENT638_0288ENT638_4115ENT638_2749ENT638_2474
EFER585054 EFER_2518EFER_2234EFER_4283EFER_4284EFER_4048EFER_2234EFER_1125
ECOO157 YPHFYPHEMGLAZ5690RBSAMGLAARAH_B
ECOL83334 ECS3414ECS3413ECS3041ECS5072ECS4691ECS3041ECS2607
ECOL585397 ECED1_2975ECED1_2974ECED1_4821ECED1_4820ECED1_4439ECED1_2596ECED1_2164
ECOL585057 ECIAI39_2751ECIAI39_2750ECIAI39_4511ECIAI39_4510ECIAI39_4354ECIAI39_2288ECIAI39_1154
ECOL585056 ECUMN_2868ECUMN_2867ECUMN_2482ECUMN_4280ECUMN_4279ECUMN_2482ECUMN_2193
ECOL585055 EC55989_2834EC55989_2833EC55989_2399EC55989_4225EC55989_4224EC55989_2399EC55989_2075
ECOL585035 ECS88_2718ECS88_2717ECS88_4588ECS88_4172ECS88_4171ECS88_2295ECS88_1954
ECOL585034 ECIAI1_2601ECIAI1_2600ECIAI1_2226ECIAI1_3934ECIAI1_3933ECIAI1_2226ECIAI1_1983
ECOL481805 ECOLC_1129ECOLC_1130ECOLC_3939ECOLC_3940ECOLC_4245ECOLC_1499ECOLC_1736
ECOL469008 ECBD_1136ECBD_1137ECBD_3943ECBD_3944ECBD_4281ECBD_1509ECBD_1742
ECOL439855 ECSMS35_2701ECSMS35_2700ECSMS35_4553ECSMS35_4552ECSMS35_4117ECSMS35_2296ECSMS35_1287
ECOL413997 ECB_02440ECB_02439ECB_03959ECB_03958ECB_03635ECB_02078ECB_01867
ECOL409438 ECSE_2835ECSE_2834ECSE_4385ECSE_4384ECSE_4039ECSE_2416ECSE_2131
ECOL405955 APECO1_3983APECO1_3984APECO1_2363APECO1_2364APECO1_2714APECO1_4402APECO1_944
ECOL364106 UTI89_C2867UTI89_C2866UTI89_C4682UTI89_C4305UTI89_C4304UTI89_C2422UTI89_C2099
ECOL362663 ECP_2549ECP_2548ECP_4330ECP_3344ECP_3948ECP_2188ECP_1840
ECOL331111 ECE24377A_2833ECE24377A_2832ECE24377A_2444ECE24377A_4266ECE24377A_4265ECE24377A_2444ECE24377A_2130
ECOL316407 ECK2545:JW2532:B2548ECK2544:JW2531:B2547ECK4080:JW4048:B4087ECK4079:JW4047:B4086ECK3743:JW3728:B3749ECK2142:JW2136:B2149ECK1897:JW1887:B4460
ECOL199310 C3070C3069C5093C5092C4677C2683C2312
ECAR218491 ECA2272ECA0011ECA1461ECA0011ECA0011ECA2271
DSHI398580 DSHI_2434DSHI_2433DSHI_2433DSHI_2432DSHI_2433DSHI_2431
CVIO243365 CV_3016CV_3018CV_3018CV_3017CV_3018CV_3018CV_3017
CTET212717 CTC_00907CTC_00905CTC_00905CTC_02349CTC_02350CTC_00861CTC_02349
CPHY357809 CPHY_1132CPHY_3279CPHY_2010CPHY_1133CPHY_2010CPHY_2242CPHY_3278
CPER195103 CPF_1549CPF_1882CPF_1881CPF_1882CPF_1549CPF_1881
CPER195102 CPE1342CPE1630CPE1629CPE1630CPE1342CPE1629
CNOV386415 NT01CX_0162NT01CX_0164NT01CX_0163NT01CX_0164NT01CX_0164NT01CX_0163
CDIF272563 CD0300CD0301CD0301CD1588CD0301CD0301CD0302
CBOT515621 CLJ_B1315CLJ_B1312CLJ_B1312CLJ_B1313CLJ_B1312CLJ_B1312CLJ_B1313
CBOT508765 CLL_A1529CLL_A1529CLL_A1530CLL_A1529CLL_A1529CLL_A1530
BXEN266265 BXE_B0573BXE_C1350BXE_C1350BXE_B1397BXE_C1350BXE_C1350BXE_B1397
BWEI315730 BCERKBAB4_0583BCERKBAB4_0581BCERKBAB4_0581BCERKBAB4_0582BCERKBAB4_0581BCERKBAB4_0581BCERKBAB4_0582
BVIE269482 BCEP1808_1558BCEP1808_3382BCEP1808_1389BCEP1808_1507BCEP1808_1389BCEP1808_1389BCEP1808_0598
BTHU412694 BALH_0612BALH_0609BALH_0609BALH_0611BALH_0609BALH_0609BALH_0611
BTHU281309 BT9727_0580BT9727_0578BT9727_0578BT9727_0579BT9727_0578BT9727_0578BT9727_0579
BTHA271848 BTH_I2475BTH_II1627BTH_I2434BTH_I2433BTH_II0211BTH_II1627BTH_I1181
BSUI470137 BSUIS_B0991BSUIS_B0929BSUIS_A1690BSUIS_A1691BSUIS_A1691BSUIS_A1690
BSUI204722 BR_A0996BR_A0936BR_1631BR_1632BR_A1151BR_1631
BSUB BSU35960BSU35940BSU35940BSU35950BSU35940BSU35940BSU35950
BSP36773 BCEP18194_A4745BCEP18194_B0624BCEP18194_B0624BCEP18194_B0886BCEP18194_A4569BCEP18194_A4569BCEP18194_A3705
BPUM315750 BPUM_3268BPUM_3266BPUM_3266BPUM_3267BPUM_3266BPUM_3266BPUM_3267
BPSE320373 BURPS668_1853BURPS668_A0286BURPS668_1909BURPS668_A0286BURPS668_A0286BURPS668_3446
BPSE320372 BURPS1710B_A2179BURPS1710B_B1956BURPS1710B_A2230BURPS1710B_B1956BURPS1710B_B1956BURPS1710B_A3759
BPSE272560 BPSL1834BPSS0142BPSL1791BPSS0142BPSS0142BPSL2966
BLIC279010 BL02443BL02441BL02441BL02442BL02441BL02441BL02442
BJAP224911 BLL5782BLL2677BLR2270BLL2676BLL2677BLR1122
BHAL272558 BH3901BH2322BH3730BH3731BH3730BH2322BH3731
BCER572264 BCA_0707BCA_0705BCA_0705BCA_0706BCA_0705BCA_0705BCA_0706
BCER405917 BCE_0737BCE_0735BCE_0735BCE_0736BCE_0735BCE_0735BCE_0736
BCER315749 BCER98_0564BCER98_0562BCER98_0562BCER98_0563BCER98_0562BCER98_0562BCER98_0563
BCER288681 BCE33L0579BCE33L0577BCE33L0577BCE33L0578BCE33L0577BCE33L0577BCE33L0578
BCER226900 BC_2960BC_0662BC_0662BC_0663BC_0662BC_0662BC_0663
BCEN331272 BCEN2424_1606BCEN2424_5039BCEN2424_5039BCEN2424_4818BCEN2424_1425BCEN2424_1425BCEN2424_0623
BCEN331271 BCEN_1126BCEN_3328BCEN_3328BCEN_3549BCEN_0943BCEN_0943BCEN_0140
BCAN483179 BCAN_B1015BCAN_B0956BCAN_A1668BCAN_A1669BCAN_B1180BCAN_A1668
BANT592021 BAA_0753BAA_0751BAA_0751BAA_0752BAA_0751BAA_0751BAA_0752
BANT568206 BAMEG_3917BAMEG_3919BAMEG_3919BAMEG_3918BAMEG_3919BAMEG_3919BAMEG_3918
BANT261594 GBAA0669GBAA0667GBAA0667GBAA0668GBAA0667GBAA0667GBAA0668
BANT260799 BAS0636BAS0634BAS0634BAS0635BAS0634BAS0634BAS0635
BAMY326423 RBAM_033130RBAM_033110RBAM_033110RBAM_033120RBAM_033110RBAM_033110RBAM_033120
BAMB398577 BAMMC406_1522BAMMC406_4967BAMMC406_4967BAMMC406_4722BAMMC406_1344BAMMC406_1344BAMMC406_0548
BAMB339670 BAMB_1503BAMB_4447BAMB_4447BAMB_4199BAMB_4447BAMB_1305BAMB_0524
ASAL382245 ASA_1968ASA_2395ASA_0215ASA_1969ASA_2395ASA_0215ASA_2394
APLE434271 APJL_1703APJL_1451APJL_1451APJL_1702APJL_1701APJL_1451APJL_1702
APLE416269 APL_1672APL_1419APL_1419APL_1671APL_1670APL_1419APL_1671
AMET293826 AMET_0587AMET_0587AMET_0588AMET_2813AMET_0587AMET_0588
AHYD196024 AHA_2312AHA_1904AHA_2310AHA_2311AHA_2310AHA_4099AHA_1905


Organism features enriched in list (features available for 143 out of the 151 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.001113140112
Disease:Anthrax 0.003505744
Disease:Bubonic_plague 0.000200966
Disease:Dysentery 0.003844056
Disease:Gastroenteritis 0.00007981013
Endospores:No 0.000117234211
Endospores:Yes 1.137e-73053
GC_Content_Range4:0-40 0.000176435213
GC_Content_Range4:40-60 6.975e-677224
GC_Content_Range7:30-40 0.001942528166
GC_Content_Range7:50-60 0.000011944107
Genome_Size_Range5:0-2 5.700e-156155
Genome_Size_Range5:2-4 0.000129231197
Genome_Size_Range5:4-6 2.229e-1178184
Genome_Size_Range5:6-10 7.224e-82847
Genome_Size_Range9:1-2 3.984e-116128
Genome_Size_Range9:2-3 0.000927617120
Genome_Size_Range9:4-5 2.918e-64296
Genome_Size_Range9:5-6 0.00010283688
Genome_Size_Range9:6-8 0.00001962138
Genome_Size_Range9:8-10 0.001001779
Gram_Stain:Gram_Neg 0.004340594333
Habitat:Aquatic 0.00434541391
Habitat:Host-associated 0.003195238206
Habitat:Multiple 0.000563059178
Habitat:Specialized 0.0072566653
Habitat:Terrestrial 6.765e-61931
Motility:No 0.000120421151
Motility:Yes 6.185e-688267
Oxygen_Req:Anaerobic 0.006889916102
Oxygen_Req:Facultative 6.620e-1080201
Pathogenic_in:Human 0.000325669213
Pathogenic_in:No 0.001273341226
Shape:Coccus 0.0002035882
Shape:Rod 3.499e-12119347
Temp._range:Mesophilic 0.0043248126473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 411
Effective number of orgs (counting one per cluster within 468 clusters): 323

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79010
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TPEN368408 ncbi Thermofilum pendens Hrk 50
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen1
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP94122 ncbi Shewanella sp. ANA-30
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSED425104 ncbi Shewanella sediminis HAW-EB30
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SONE211586 ncbi Shewanella oneidensis MR-10
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SLOI323850 ncbi Shewanella loihica PV-40
SLAC55218 Ruegeria lacuscaerulensis0
SGOR29390 Streptococcus gordonii Challis1
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2170
SBAL402882 ncbi Shewanella baltica OS1850
SBAL399599 ncbi Shewanella baltica OS1950
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170250
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170291
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-30
RPAL316058 ncbi Rhodopseudomonas palustris HaA20
RPAL316057 ncbi Rhodopseudomonas palustris BisB50
RPAL316056 ncbi Rhodopseudomonas palustris BisB180
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RPAL258594 ncbi Rhodopseudomonas palustris CGA0090
RMET266264 ncbi Ralstonia metallidurans CH340
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSTU379731 ncbi Pseudomonas stutzeri A15010
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP296591 ncbi Polaromonas sp. JS6661
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PNAP365044 ncbi Polaromonas naphthalenivorans CJ21
PMEN399739 ncbi Pseudomonas mendocina ymp0
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OCAR504832 ncbi Oligotropha carboxidovorans OM50
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16220
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP409 Methylobacterium sp.0
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM10
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
JSP375286 ncbi Janthinobacterium sp. Marseille0
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GURA351605 ncbi Geobacter uraniireducens Rf40
GSUL243231 ncbi Geobacter sulfurreducens PCA0
GOXY290633 ncbi Gluconobacter oxydans 621H0
GMET269799 ncbi Geobacter metallireducens GS-150
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRAD243230 ncbi Deinococcus radiodurans R10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DHAF138119 ncbi Desulfitobacterium hafniense Y510
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
DARO159087 ncbi Dechloromonas aromatica RCB0
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CSP501479 Citreicella sp. SE450
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29010
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPET94624 Bordetella petrii0
BPER257313 ncbi Bordetella pertussis Tohama I0
BPAR257311 ncbi Bordetella parapertussis 128220
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BBUR224326 ncbi Borrelia burgdorferi B310
BBRO257310 ncbi Bordetella bronchiseptica RB501
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP62928 ncbi Azoarcus sp. BH720
ASP232721 ncbi Acidovorax sp. JS420
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110171
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAU360910 ncbi Bordetella avium 197N0
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G7342   G7341   EG11959   EG11958   EG10814   EG10592   EG10059   
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
XAUT78245
WSUC273121
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTUR377629
TTHE300852
TTHE262724
TPEN368408
TKOD69014
TFUS269800
TELO197221
TDEN326298
TDEN292415
TCRU317025
TACI273075
SWOL335541 SWOL_0425
STRO369723
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP94122
SSP84588
SSP64471
SSP387093
SSP321332
SSP321327
SSP1148
SSP1131
SSOL273057
SSED425104
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SONE211586
SMUT210007
SMAR399550
SLOI323850
SLAC55218
SGOR29390 SGO_1897
SFUM335543
SEPI176280
SEPI176279
SELO269084
SDEN318161
SBAL402882
SBAL399599
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037
SALA317655
SACI56780
SACI330779
RTYP257363
RSPH349102
RSPH349101 RSPH17029_3422
RSPH272943 RSP_3687
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RPOM246200
RPAL316058
RPAL316057
RPAL316056
RPAL316055
RPAL258594
RMET266264
RMAS416276
RFEL315456
RCON272944
RCAS383372
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PTHE370438
PSTU379731
PSP56811
PSP312153
PSP296591 BPRO_3204
PRUM264731
PPEN278197
PNAP365044 PNAP_2604
PMEN399739
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PHOR70601
PHAL326442
PGIN242619
PFUR186497
PDIS435591
PCRY335284
PCAR338963
PATL342610
PAST100379
PARS340102
PARC259536
PAER178306
PABY272844
OTSU357244
OCAR504832
NWIN323098
NSP387092
NSP103690
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NFAR247156
NEUT335283
NEUR228410
NARO279238
MXAN246197
MVAN350058
MTUB419947
MTUB336982
MTHE349307
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP409
MSED399549
MPUL272635
MPNE272634
MPET420662
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407
MMAR267377
MMAG342108
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MFLA265072
MEXT419610
MCAP340047
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAQU351348
MAER449447
MAEO419665
MACE188937
MABS561007
LWEL386043
LSPH444177
LSAK314315
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LPLA220668
LMON265669
LMON169963
LMES203120
LJOH257314
LINT363253
LINT267671
LINT189518
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
JSP375286
ILOI283942
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032
HMUK485914
HMAR272569
HHEP235279
HHAL349124
HDUC233412
HBUT415426
HARS204773
HACI382638
GURA351605
GSUL243231
GOXY290633
GMET269799
GFOR411154
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855
FSP106370
FRANT
FPHI484022
FNOD381764
FMAG334413
FJOH376686
FALN326424
ERUM302409
ERUM254945
ELIT314225
EFAE226185
ECHA205920
ECAN269484
DVUL882
DSP255470
DSP216389
DRAD243230
DPSY177439
DOLE96561
DNOD246195
DHAF138119
DETH243164
DDES207559
DARO159087
CVES412965
CTRA471473
CTRA471472
CTEP194439
CSUL444179
CSP78
CSP501479
CRUT413404
CPSY167879
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPEL335992
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CJAP155077
CHYD246194
CHUT269798
CHOM360107
CFET360106
CFEL264202
CEFF196164
CDIP257309
CDES477974
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT536232
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CBLO291272
CBLO203907
CACE272562 CAC1351
CABO218497
BTUR314724
BTRI382640
BTHE226186
BSP107806
BQUI283165
BPET94624
BPER257313
BPAR257311
BLON206672 BL0035
BHER314723
BHEN283166
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BBUR224326
BBRO257310 BB2712
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AURANTIMONAS
ASP76114
ASP62977
ASP62928
ASP232721
APHA212042
APER272557
AORE350688
ANAE240017
AMAR329726 AM1_4844
AMAR234826
ALAI441768
AFUL224325
AFER243159
AEHR187272
ADEH290397
ACEL351607 ACEL_1049
ABUT367737
ABOR393595
ABAU360910
AAEO224324


Organism features enriched in list (features available for 384 out of the 411 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.003146762112
Disease:Gastroenteritis 0.0015831313
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00963231111
Disease:Wide_range_of_infections 0.00963231111
Endospores:No 0.0000201161211
Endospores:Yes 5.128e-71853
GC_Content_Range4:0-40 5.743e-8169213
GC_Content_Range4:40-60 0.0005254130224
GC_Content_Range4:60-100 0.005582984145
GC_Content_Range7:30-40 3.343e-6132166
GC_Content_Range7:50-60 8.489e-651107
GC_Content_Range7:60-70 0.008767478134
Genome_Size_Range5:0-2 8.782e-24148155
Genome_Size_Range5:2-4 0.0004272147197
Genome_Size_Range5:4-6 1.550e-1480184
Genome_Size_Range5:6-10 8.111e-12947
Genome_Size_Range9:0-1 9.183e-62727
Genome_Size_Range9:1-2 1.083e-17121128
Genome_Size_Range9:2-3 0.000381594120
Genome_Size_Range9:4-5 5.206e-64496
Genome_Size_Range9:5-6 1.195e-73688
Genome_Size_Range9:6-8 6.321e-10738
Genome_Size_Range9:8-10 0.008042629
Gram_Stain:Gram_Neg 0.0043969206333
Habitat:Aquatic 0.00120407291
Habitat:Host-associated 0.0023189150206
Habitat:Multiple 0.000109998178
Habitat:Specialized 0.00527424353
Habitat:Terrestrial 0.0000155931
Motility:No 0.0000294119151
Motility:Yes 1.083e-6149267
Optimal_temp.:30-37 0.00462161718
Oxygen_Req:Anaerobic 0.003901078102
Oxygen_Req:Facultative 8.297e-6109201
Pathogenic_in:Animal 0.00766983566
Pathogenic_in:Human 0.0040335127213
Shape:Coccus 0.00013446882
Shape:Irregular_coccus 0.00073031717
Shape:Rod 5.137e-15186347
Shape:Sphere 0.00316881819
Shape:Spiral 0.00043083134
Temp._range:Mesophilic 0.0053337301473



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 5
Effective number of orgs (counting one per cluster within 468 clusters): 4

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
TPET390874 ncbi Thermotoga petrophila RKU-1 0.00233158347
TMAR243274 ncbi Thermotoga maritima MSB8 0.00247258417
TSP28240 Thermotoga sp. 0.00313748707
LLAC272623 ncbi Lactococcus lactis lactis Il1403 0.00423629087
CTET212717 ncbi Clostridium tetani E88 0.008460510027


Names of the homologs of the genes in the group in each of these orgs
  G7342   G7341   EG11959   EG11958   EG10814   EG10592   EG10059   
TPET390874 TPET_1794TPET_0809TPET_0809TPET_1793TPET_0809TPET_0809TPET_0812
TMAR243274 TM_0958TM_0115TM_0115TM_0955TM_0956TM_0956TM_0112
TSP28240 TRQ2_0833TRQ2_0832TRQ2_0975TRQ2_0974TRQ2_0975TRQ2_0975TRQ2_0835
LLAC272623 L82310L84240L84240L83296L84240L84240L83296
CTET212717 CTC_00907CTC_00905CTC_00905CTC_02349CTC_02350CTC_00861CTC_02349


Organism features enriched in list (features available for 4 out of the 5 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Tetanus 0.006861111
Optimal_temp.:80 0.000105723
Temp._range:Hyperthermophilic 0.0083120223



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GALACTITOLCAT-PWY (galactitol degradation)73610.5044
PWY-6196 (serine racemization)102720.4786
XYLCAT-PWY (xylose degradation I)2171120.4670
GLUTAMINDEG-PWY (glutamine degradation I)1911030.4607
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))121770.4514
PWY-6374 (vibriobactin biosynthesis)77580.4477
RIBOKIN-PWY (ribose degradation)2791270.4473
GLUTDEG-PWY (glutamate degradation II)1941000.4286
GLUCUROCAT-PWY (β-D-glucuronide and D-glucuronate degradation)2081030.4177
PWY0-1295 (pyrimidine ribonucleosides degradation I)2391110.4088
GLUCARDEG-PWY (D-glucarate degradation I)152830.4026



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7341   EG11959   EG11958   EG10814   EG10592   EG10059   
G73420.9993930.9993590.9994340.999360.9993360.999301
G73410.9995580.9993470.9994210.9996420.99938
EG119590.999590.9996740.9996740.99937
EG119580.9996370.9994620.999577
EG108140.9996690.999499
EG105920.99932
EG10059



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PAIRWISE BLAST SCORES:

  G7342   G7341   EG11959   EG11958   EG10814   EG10592   EG10059   
G73420.0f0------
G7341-0.0f05.6e-80-1.7e-801.1e-85-
EG11959--0.0f0-4.0e-952.1e-96-
EG11958---0.0f0---
EG10814----0.0f02.7e-112-
EG10592----1.4e-1080.0f0-
EG10059---1.3e-13--0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ABC-60-CPLX (YphD/YphE/YphF ABC transporter) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.286, average score: 0.999)
  Genes in pathway or complex:
   *in cand* 0.9995 0.9993 G7341 (yphE) YPHE-MONOMER (YphE)
   *in cand* 0.9995 0.9993 G7342 (yphF) G7342-MONOMER (YphF)
             0.9994 0.9992 G7340 (yphD) YPHD-MONOMER (YphD)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9993 EG10059 (araH) ARAH-MONOMER (high-affinity L-arabinose transport protein (ABC superfamily, membrane))
   *in cand* 0.9996 0.9993 EG10592 (mglA) MGLA-MONOMER (MglA)
   *in cand* 0.9996 0.9994 EG10814 (rbsA) RBSA-MONOMER (RbsA)
   *in cand* 0.9996 0.9993 EG11958 (alsC) YJCV-MONOMER (AlsC)
   *in cand* 0.9996 0.9994 EG11959 (alsA) YJCW-MONOMER (AlsA)

- ABC-42-CPLX (D-allose ABC transporter) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.286, average score: 0.993)
  Genes in pathway or complex:
             0.4926 0.0887 EG12458 (alsB) YJCX-MONOMER (AlsB)
   *in cand* 0.9996 0.9993 EG11958 (alsC) YJCV-MONOMER (AlsC)
   *in cand* 0.9996 0.9994 EG11959 (alsA) YJCW-MONOMER (AlsA)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9993 EG10059 (araH) ARAH-MONOMER (high-affinity L-arabinose transport protein (ABC superfamily, membrane))
   *in cand* 0.9996 0.9993 EG10592 (mglA) MGLA-MONOMER (MglA)
   *in cand* 0.9996 0.9994 EG10814 (rbsA) RBSA-MONOMER (RbsA)
   *in cand* 0.9995 0.9993 G7341 (yphE) YPHE-MONOMER (YphE)
   *in cand* 0.9995 0.9993 G7342 (yphF) G7342-MONOMER (YphF)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11958 EG11959 (centered at EG11959)
EG10814 (centered at EG10814)
EG10592 (centered at EG10592)
EG10059 (centered at EG10059)
G7341 G7342 (centered at G7342)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7342   G7341   EG11959   EG11958   EG10814   EG10592   EG10059   
178/623172/623183/623194/623176/623179/623182/623
AAUR290340:2:Tyes5151505-0--0
AAVE397945:0:Tyes40-----
ABAC204669:0:Tyes-1-011-
ACAU438753:0:Tyes-001-0-
ACEL351607:0:Tyes------0
ACRY349163:8:Tyes0635-2--1736
AHYD196024:0:Tyes401039940039920891
AMAR329726:9:Tyes0------
AMET293826:0:Tyes-001217801
APLE416269:0:Tyes273002722710272
APLE434271:0:Tno273002722710272
ASAL382245:5:Tyes1698211001699211002109
ASP1667:3:Tyes088-2-8389
AVAR240292:3:Tyes-00100-
BABO262698:0:Tno--0-744744-
BABO262698:1:Tno---0--0
BAMB339670:2:Tno-2462460246--
BAMB339670:3:Tno1008----7980
BAMB398577:2:Tno-2382380---
BAMB398577:3:Tno987---8038030
BAMY326423:0:Tyes2001001
BANT260799:0:Tno2001001
BANT261594:2:Tno2001001
BANT568206:2:Tyes0221221
BANT592021:2:Tno2001001
BBRO257310:0:Tyes0------
BCAN483179:0:Tno56-0--215-
BCAN483179:1:Tno---01-0
BCEN331271:1:Tno-00221---
BCEN331271:2:Tno1006---8188180
BCEN331272:2:Tyes-2212210---
BCEN331272:3:Tyes982---8018010
BCER226900:1:Tyes2256001001
BCER288681:0:Tno2001001
BCER315749:1:Tyes2001001
BCER405917:1:Tyes2001001
BCER572264:1:Tno2001001
BCLA66692:0:Tyes--10110
BHAL272558:0:Tyes1594014231424142301424
BJAP224911:0:Fyes4695156911591568-15690
BLIC279010:0:Tyes2001001
BLON206672:0:Tyes------0
BMAL243160:1:Tno--101149-1148
BMAL320388:1:Tno--121312121-0
BMAL320389:1:Tyes--012393-2394
BMEL224914:0:Tno--227-00-
BMEL224914:1:Tno---0--0
BMEL359391:0:Tno--0-740740-
BMEL359391:1:Tno---0--0
BOVI236:0:Tyes--0----
BOVI236:1:Tyes---0110
BPSE272560:0:Tyes--0-00-
BPSE272560:1:Tyes43--0--1197
BPSE320372:0:Tno--0-00-
BPSE320372:1:Tno0--51--1474
BPSE320373:0:Tno--0-00-
BPSE320373:1:Tno0--55--1532
BPUM315750:0:Tyes2001001
BSP36773:1:Tyes-00263---
BSP36773:2:Tyes1061---8798790
BSP376:0:Tyes-323204040-907
BSUB:0:Tyes2001001
BSUI204722:0:Tyes57-0--202-
BSUI204722:1:Tyes---01-0
BSUI470137:0:Tno59-0----
BSUI470137:1:Tno---0110
BTHA271848:0:Tno-1410--01410-
BTHA271848:1:Tno1270-12291228--0
BTHU281309:1:Tno2001001
BTHU412694:1:Tno2001001
BVIE269482:6:Tyes-0-----
BVIE269482:7:Tyes955-7879047877870
BWEI315730:4:Tyes2001001
BXEN266265:0:Tyes-00-00-
BXEN266265:1:Tyes810--0--0
CACE272562:1:Tyes0------
CAULO:0:Tyes-001---
CBEI290402:0:Tyes530532532-5320-
CBOT508765:1:Tyes-001001
CBOT515621:2:Tyes3001001
CDIF272563:1:Tyes0111321112
CGLU196627:0:Tyes-001-01
CNOV386415:0:Tyes0-21221
CPER195102:1:Tyes-02892882890288
CPER195103:0:Tno-03233223230322
CPER289380:3:Tyes-0253-2530252
CPHY357809:0:Tyes02126869186910982125
CSAL290398:0:Tyes1681-0-681682
CTET212717:0:Tyes4139391365136601365
CVIO243365:0:Tyes0221221
DGEO319795:0:Tyes-00-00-
DRED349161:0:Tyes0--1221
DSHI398580:5:Tyes32212-0
ECAR218491:0:Tyes-228401477002283
ECOL199310:0:Tno7487472740273923313670
ECOL316407:0:Tno6486472165216416062490
ECOL331111:6:Tno669668299205420532990
ECOL362663:0:Tno7137122482151321123540
ECOL364106:1:Tno7687672564219621953230
ECOL405955:2:Tyes7407392382238120123120
ECOL409438:6:Tyes7207192322232119482930
ECOL413997:0:Tno5825812135213417882150
ECOL439855:4:Tno139513943161316027579990
ECOL469008:0:Tno01278227833141376607
ECOL481805:0:Tno01280728083137373606
ECOL585034:0:Tno619618248192519242480
ECOL585035:0:Tno7427412539215221513260
ECOL585055:0:Tno745744317210721063170
ECOL585056:2:Tno685684298208420832980
ECOL585057:0:Tno1571157033563355318811160
ECOL585397:0:Tno8007992610260922284230
ECOL83334:0:Tno828827446254621364460
ECOLI:0:Tno6646632221222018802530
ECOO157:0:Tno794793412247721144120
EFER585054:1:Tyes1386109631223123289610960
ESP42895:1:Tyes2481248010386924802201
FNUC190304:0:Tyes-00-00-
GKAU235909:1:Tyes2135913591358135901358
GTHE420246:1:Tyes0221221
GVIO251221:0:Tyes0--936--936
HAUR316274:2:Tyes-0-1549---
HCHE349521:0:Tyes-125201253001253
HINF281310:0:Tyes23360103361
HINF374930:0:Tyes0131013101213101
HINF71421:0:Tno2318318103181
HMOD498761:0:Tyes20-1001
HSOM205914:1:Tyes181-1820-989988
HSOM228400:0:Tno4754764764770141
JSP290400:1:Tyes5005015015020501505
KPNE272620:2:Tyes010684034266126601068759
KRAD266940:2:Fyes-2278-0--0
LACI272621:0:Tyes0-21221
LCAS321967:1:Tyes2-01001
LCHO395495:0:Tyes013892496238124962496-
LLAC272622:5:Tyes011-11-
LLAC272623:0:Tyes0221221
LXYL281090:0:Tyes01-----
MLOT266835:2:Tyes528333657871200336180
MSME246196:0:Tyes902903-1074--0
MSP164756:1:Tno0--1---
MSP164757:0:Tno0--1---
MSP189918:2:Tyes0--1---
MSP266779:3:Tyes-288428842885-02885
MSP400668:0:Tyes1150114901148-01
MSUC221988:0:Tyes160460460414216040
MTHE264732:0:Tyes0112112
NSP35761:1:Tyes---0--724
OANT439375:4:Tyes-0-71600-
OANT439375:5:Tyes2-1---0
OIHE221109:0:Tyes0221221
PACN267747:0:Tyes-0-1-01
PAER208963:0:Tyes10-----
PAER208964:0:Tno01-----
PENT384676:0:Tyes01-----
PFLU205922:0:Tyes0223212231223222322231
PFLU216595:1:Tyes1303071615661931932224
PFLU220664:0:Tyes011211-
PING357804:0:Tyes2229101001
PLUM243265:0:Fyes--01001
PMOB403833:0:Tyes1658658659--0
PMUL272843:1:Tyes11718851172018850
PNAP365044:8:Tyes---0---
PPRO298386:1:Tyes2314314103141
PPUT160488:0:Tno01-----
PPUT351746:0:Tyes10-----
PPUT76869:0:Tno10-----
PSP117:0:Tyes146200100-
PSP296591:2:Tyes---0---
PSYR205918:0:Tyes0138524961802249624961603
PSYR223283:2:Tyes3001099109810991099268
RDEN375451:4:Tyes-1101--
RETL347834:0:Tyes--0----
RETL347834:5:Tyes11842461-0275127512460
REUT264198:2:Tyes2-----0
REUT264198:3:Tyes-11011-
REUT381666:1:Tyes-0010-1
RFER338969:1:Tyes2692269026900269026900
RLEG216596:2:Tyes0------
RLEG216596:4:Tyes-0-----
RLEG216596:6:Tyes--7030290129012479
RRUB269796:1:Tyes---0--1111
RSOL267608:1:Tyes0-239-2392391778
RSP101510:3:Fyes03253325323253-2
RSP357808:0:Tyes--0-00-
RSPH272943:3:Tyes0------
RSPH349101:1:Tno0------
RXYL266117:0:Tyes2020482047002047
SAGA205921:0:Tno0-21221
SAGA208435:0:Tno0-21221
SAGA211110:0:Tyes0-21221
SAVE227882:1:Fyes3441565364414653644150
SBOY300268:1:Tyes1389138810152525234710150
SCO:2:Fyes3493480349348348-
SDEG203122:0:Tyes-0----1
SDYS300267:1:Tyes951-280626850-1
SENT209261:0:Tno0-28392838283928392838
SENT220341:0:Tno0-13711370137113711370
SENT295319:0:Tno0-2935-29352935-
SENT321314:2:Tno0161216121613161216121613
SENT454169:2:Tno1017321733173201733
SERY405948:0:Tyes3664366336630366336633664
SFLE198214:0:Tyes27261627118272712710
SFLE373384:0:Tno623622263172019372630
SGLO343509:3:Tyes3583593590359359-
SGOR29390:0:Tyes0------
SHAE279808:0:Tyes2-01001
SHAL458817:0:Tyes2148314831001
SHIGELLA:0:Tno26161226016762602600
SMED366394:1:Tyes---0---
SMED366394:2:Tyes1150-1149--6560
SMED366394:3:Tyes-0--0--
SMEL266834:1:Tyes467-466--9330
SMEL266834:2:Tyes-623-0623--
SPEA398579:0:Tno2184018401001
SPRO399741:1:Tyes324032390392639275481238
SSAP342451:2:Tyes0-21221
SSON300269:1:Tyes13451344935256725669350
SSP292414:1:Tyes-1-0--15
SSP292414:2:Tyes--0----
SSP644076:3:Fyes-0-----
SSP644076:4:Fyes--01--1
STHE292459:0:Tyes2110110
STYP99287:1:Tyes1016841685168401685
SWOL335541:0:Tyes------0
TDEN243275:0:Tyes--0--0-
TERY203124:0:Tyes-0---0-
TLET416591:0:Tyes1750-111551155174
TMAR243274:0:Tyes828338258268260
TPAL243276:0:Tyes-0---0-
TPET390874:0:Tno98700986003
TPSE340099:0:Tyes0-2122-
TROS309801:0:Tyes-0018000-
TSP1755:0:Tyes98147870815
TSP28240:0:Tyes101411401411413
TTEN273068:0:Tyes5325305305310530531
VCHO:0:Tyes-00--0-
VCHO:1:Fyes2--10-1
VCHO345073:0:Tno0--12-1
VCHO345073:1:Tno-00--0-
VEIS391735:1:Tyes1399102210221964102203682
VFIS312309:2:Tyes2-01001
VPAR223926:0:Tyes05892122588
VVUL196600:1:Tyes417004164150416
VVUL216895:0:Tno2001011821
YENT393305:1:Tyes2715271427141027141947
YPES187410:5:Tno097016692194970970407
YPES214092:3:Tno1492539029135395391249
YPES349746:2:Tno1548277203829277227722035
YPES360102:3:Tyes1719510035425105101338
YPES377628:2:Tno371755145619207557550
YPES386656:2:Tno1357906027789069061
YPSE273123:2:Tno011717228311656
YPSE349747:2:Tno688164003183164016401063



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