CANDIDATE ID: 120

CANDIDATE ID: 120

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9954343e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    2.8571429e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7341 (yphE) (b2547)
   Products of gene:
     - YPHE-MONOMER (YphE)
     - ABC-60-CPLX (YphD/YphE/YphF ABC transporter)

- EG11959 (alsA) (b4087)
   Products of gene:
     - YJCW-MONOMER (AlsA)
     - ABC-42-CPLX (D-allose ABC transporter)
       Reactions:
        D-allose[periplasmic space] + ATP + H2O  ->  D-allose[cytosol] + ADP + phosphate

- EG11958 (alsC) (b4086)
   Products of gene:
     - YJCV-MONOMER (AlsC)
     - ABC-42-CPLX (D-allose ABC transporter)
       Reactions:
        D-allose[periplasmic space] + ATP + H2O  ->  D-allose[cytosol] + ADP + phosphate

- EG10814 (rbsA) (b3749)
   Products of gene:
     - RBSA-MONOMER (RbsA)
     - ABC-28-CPLX (ribose ABC transporter)
       Reactions:
        ATP + beta-D-ribopyranose[periplasmic space] + H2O  ->  ADP + phosphate + beta-D-ribopyranose[cytosol]

- EG10594 (mglC) (b2148)
   Products of gene:
     - MGLC-MONOMER (MglC)
     - ABC-18-CPLX (galactose ABC transporter)
       Reactions:
        ATP + beta-D-galactose[periplasmic space] + H2O  ->  ADP + phosphate + beta-D-galactose[cytosol]

- EG10592 (mglA) (b2149)
   Products of gene:
     - MGLA-MONOMER (MglA)
     - ABC-18-CPLX (galactose ABC transporter)
       Reactions:
        ATP + beta-D-galactose[periplasmic space] + H2O  ->  ADP + phosphate + beta-D-galactose[cytosol]

- EG10058 (araG) (b1900)
   Products of gene:
     - ARAG-MONOMER (AraG)
     - ABC-2-CPLX (arabinose ABC transporter)
       Reactions:
        alpha-L-arabinopyranose[periplasmic space] + ATP + H2O  ->  alpha-L-arabinopyranose[cytosol] + phosphate + ADP



Back to top


ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 157
Effective number of orgs (counting one per cluster within 468 clusters): 101

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317587
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329537
YPES386656 ncbi Yersinia pestis Pestoides F7
YPES377628 ncbi Yersinia pestis Nepal5167
YPES360102 ncbi Yersinia pestis Antiqua7
YPES349746 ncbi Yersinia pestis Angola7
YPES214092 ncbi Yersinia pestis CO927
YPES187410 ncbi Yersinia pestis KIM 107
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80817
VVUL216895 ncbi Vibrio vulnificus CMCP67
VVUL196600 ncbi Vibrio vulnificus YJ0167
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106337
VFIS312309 ncbi Vibrio fischeri ES1146
VEIS391735 ncbi Verminephrobacter eiseniae EF01-27
VCHO345073 ncbi Vibrio cholerae O3957
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169617
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB47
TSP28240 Thermotoga sp.6
TSP1755 Thermoanaerobacter sp.7
TROS309801 ncbi Thermomicrobium roseum DSM 51597
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332236
TPET390874 ncbi Thermotoga petrophila RKU-16
TMAR243274 ncbi Thermotoga maritima MSB87
TLET416591 ncbi Thermotoga lettingae TMO6
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
STHE292459 ncbi Symbiobacterium thermophilum IAM 148636
SSON300269 ncbi Shigella sonnei Ss0467
SPRO399741 ncbi Serratia proteamaculans 5687
SPEA398579 ncbi Shewanella pealeana ATCC 7003457
SMEL266834 ncbi Sinorhizobium meliloti 10217
SMED366394 ncbi Sinorhizobium medicae WSM4197
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SHAL458817 ncbi Shewanella halifaxensis HAW-EB47
SGLO343509 ncbi Sodalis glossinidius morsitans7
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23386
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SCO ncbi Streptomyces coelicolor A3(2)6
SBOY300268 ncbi Shigella boydii Sb2277
SAVE227882 ncbi Streptomyces avermitilis MA-46806
SAGA211110 ncbi Streptococcus agalactiae NEM3166
SAGA208435 ncbi Streptococcus agalactiae 2603V/R6
SAGA205921 ncbi Streptococcus agalactiae A9096
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99416
RSP101510 ncbi Rhodococcus jostii RHA16
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38417
RFER338969 ncbi Rhodoferax ferrireducens T1187
REUT381666 ncbi Ralstonia eutropha H166
REUT264198 ncbi Ralstonia eutropha JMP1347
RETL347834 ncbi Rhizobium etli CFN 427
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30007
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a7
PSP117 Pirellula sp.7
PPRO298386 ncbi Photobacterium profundum SS97
PMUL272843 ncbi Pasteurella multocida multocida Pm707
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO16
PING357804 ncbi Psychromonas ingrahamii 377
PFLU220664 ncbi Pseudomonas fluorescens Pf-57
PFLU216595 ncbi Pseudomonas fluorescens SBW257
PFLU205922 ncbi Pseudomonas fluorescens Pf0-16
OIHE221109 ncbi Oceanobacillus iheyensis HTE8317
OANT439375 ncbi Ochrobactrum anthropi ATCC 491887
MTHE264732 ncbi Moorella thermoacetica ATCC 390737
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E7
MSP400668 ncbi Marinomonas sp. MWYL16
MLOT266835 ncbi Mesorhizobium loti MAFF3030997
LLAC272623 ncbi Lactococcus lactis lactis Il14037
LCHO395495 ncbi Leptothrix cholodnii SP-67
LACI272621 ncbi Lactobacillus acidophilus NCFM6
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785787
JSP290400 ncbi Jannaschia sp. CCS17
HSOM228400 ncbi Haemophilus somnus 23367
HINF71421 ncbi Haemophilus influenzae Rd KW207
HINF374930 ncbi Haemophilus influenzae PittEE7
HINF281310 ncbi Haemophilus influenzae 86-028NP7
HCHE349521 ncbi Hahella chejuensis KCTC 23967
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-27
GKAU235909 ncbi Geobacillus kaustophilus HTA4267
ESP42895 Enterobacter sp.7
EFER585054 ncbi Escherichia fergusonii ATCC 354697
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O17
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10437
CVIO243365 ncbi Chromobacterium violaceum ATCC 124727
CTET212717 ncbi Clostridium tetani E887
CPHY357809 ncbi Clostridium phytofermentans ISDg7
CPER289380 ncbi Clostridium perfringens SM1016
CPER195103 ncbi Clostridium perfringens ATCC 131247
CPER195102 ncbi Clostridium perfringens 137
CNOV386415 ncbi Clostridium novyi NT6
CDIF272563 ncbi Clostridium difficile 6307
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6577
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B7
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80526
BXEN266265 ncbi Burkholderia xenovorans LB4007
BWEI315730 ncbi Bacillus weihenstephanensis KBAB47
BVIE269482 ncbi Burkholderia vietnamiensis G47
BTHU412694 ncbi Bacillus thuringiensis Al Hakam7
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-277
BTHA271848 ncbi Burkholderia thailandensis E2647
BSUI204722 ncbi Brucella suis 13306
BSUB ncbi Bacillus subtilis subtilis 1687
BSP376 Bradyrhizobium sp.6
BSP36773 Burkholderia sp.7
BPUM315750 ncbi Bacillus pumilus SAFR-0327
BPSE320373 ncbi Burkholderia pseudomallei 6686
BPSE320372 ncbi Burkholderia pseudomallei 1710b6
BPSE272560 ncbi Burkholderia pseudomallei K962436
BMEL359391 ncbi Brucella melitensis biovar Abortus 23086
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M6
BLIC279010 ncbi Bacillus licheniformis ATCC 145807
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1106
BHAL272558 ncbi Bacillus halodurans C-1257
BCLA66692 ncbi Bacillus clausii KSM-K166
BCER572264 ncbi Bacillus cereus 03BB1027
BCER405917 Bacillus cereus W7
BCER315749 ncbi Bacillus cytotoxicus NVH 391-987
BCER288681 ncbi Bacillus cereus E33L7
BCER226900 ncbi Bacillus cereus ATCC 145797
BCEN331272 ncbi Burkholderia cenocepacia HI24247
BCEN331271 ncbi Burkholderia cenocepacia AU 10547
BCAN483179 ncbi Brucella canis ATCC 233656
BANT592021 ncbi Bacillus anthracis A02487
BANT568206 ncbi Bacillus anthracis CDC 6847
BANT261594 ncbi Bacillus anthracis Ames Ancestor7
BANT260799 ncbi Bacillus anthracis Sterne7
BAMY326423 ncbi Bacillus amyloliquefaciens FZB427
BAMB398577 ncbi Burkholderia ambifaria MC40-67
BAMB339670 ncbi Burkholderia ambifaria AMMD7
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9416
AVAR240292 ncbi Anabaena variabilis ATCC 294137
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4497
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL037
APLE416269 ncbi Actinobacillus pleuropneumoniae L207
AMET293826 ncbi Alkaliphilus metalliredigens QYMF6
AHYD196024 Aeromonas hydrophila dhakensis7


Names of the homologs of the genes in the group in each of these orgs
  G7341   EG11959   EG11958   EG10814   EG10594   EG10592   EG10058   
YPSE349747 YPSIP31758_2466YPSIP31758_0813YPSIP31758_4029YPSIP31758_2466YPSIP31758_2465YPSIP31758_2466YPSIP31758_2972
YPSE273123 YPTB1523YPTB3230YPTB3806YPTB1523YPTB1524YPTB1523YPTB2175
YPES386656 YPDSF_1469YPDSF_0556YPDSF_3327YPDSF_1469YPDSF_1468YPDSF_1469YPDSF_2672
YPES377628 YPN_2471YPN_3156YPN_3612YPN_2471YPN_2470YPN_2471YPN_1725
YPES360102 YPA_0803YPA_0306YPA_3791YPA_0803YPA_0804YPA_0803YPA_2519
YPES349746 YPANGOLA_A3018YPANGOLA_A0157YPANGOLA_A4097YPANGOLA_A3018YPANGOLA_A3019YPANGOLA_A3018YPANGOLA_A1873
YPES214092 YPO1508YPO0958YPO3963YPO1508YPO1509YPO1508YPO2256
YPES187410 Y2661Y3345Y3866Y2661Y2660Y2661Y1150
YENT393305 YE2814YE2814YE0010YE0009YE2813YE2814YE2004
VVUL216895 VV2_0062VV2_0062VV2_0063VV2_0062VV2_1324VV2_1325VV2_0062
VVUL196600 VVA0162VVA0162VVA0570VVA0569VVA0161VVA0162VVA0569
VPAR223926 VPA1672VPA1086VPA1085VPA1086VPA1085VPA1086VPA1672
VFIS312309 VF1445VF1446VF1445VF1446VF1445VF1445
VEIS391735 VEIS_1088VEIS_1088VEIS_2045VEIS_1088VEIS_0055VEIS_0061VEIS_3776
VCHO345073 VC0395_A0944VC0395_A0944VC0395_0009VC0395_0010VC0395_A0945VC0395_A0944VC0395_0010
VCHO VC1327VC1327VCA0129VCA0128VC1328VC1327VCA0128
TTEN273068 TTE0763TTE0763TTE0764TTE0204TTE0205TTE0763TTE0204
TSP28240 TRQ2_0832TRQ2_0975TRQ2_0974TRQ2_0975TRQ2_0975TRQ2_0975
TSP1755 TETH514_0989TETH514_0164TETH514_0165TETH514_0164TETH514_0158TETH514_0157TETH514_0164
TROS309801 TRD_A0592TRD_A0592TRD_A0772TRD_A0592TRD_A0772TRD_A0592TRD_A0592
TPSE340099 TETH39_2040TETH39_2039TETH39_2040TETH39_2039TETH39_2040TETH39_2040
TPET390874 TPET_0809TPET_0809TPET_1793TPET_0809TPET_1793TPET_0809
TMAR243274 TM_0115TM_0115TM_0955TM_0956TM_0955TM_0956TM_0956
TLET416591 TLET_0184TLET_0185TLET_1327TLET_1328TLET_1327TLET_1327
STYP99287 STM2189STM3882STM3883STM3882STM2188STM2189STM3882
STHE292459 STH2341STH2341STH2340STH2341STH2341STH2341
SSON300269 SSO_2630SSO_2205SSO_3920SSO_3919SSO_2204SSO_2205SSO_1218
SPRO399741 SPRO_4228SPRO_1029SPRO_4899SPRO_4900SPRO_1565SPRO_1564SPRO_2246
SPEA398579 SPEA_2284SPEA_2284SPEA_0516SPEA_0515SPEA_2283SPEA_0515SPEA_0515
SMEL266834 SMC02325SMB21376SMC02772SMC02325SMB20714SMB20713SMB20507
SMED366394 SMED_0226SMED_4768SMED_5745SMED_0226SMED_4266SMED_4267SMED_3601
SHIGELLA YPHEMGLARBSCMGLAMGLCMGLAARAG
SHAL458817 SHAL_2010SHAL_2010SHAL_0580SHAL_0579SHAL_2011SHAL_0579SHAL_0579
SGLO343509 SG0964SG0964SG0613SG0964SG0965SG0964SG0964
SFLE373384 SFV_2595SFV_2224SFV_3749SFV_3973SFV_2223SFV_2224SFV_1943
SFLE198214 AAN44092.1AAN43755.1AAN45272.1AAN43755.1AAN43754.1AAN43755.1AAN43498.1
SERY405948 SACE_5659SACE_5659SACE_1882SACE_5659SACE_5659SACE_2987
SENT454169 SEHA_C2424SEHA_C4215SEHA_C4216SEHA_C4215SEHA_C2423SEHA_C2424SEHA_C4215
SENT321314 SCH_3795SCH_3795SCH_3796SCH_3795SCH_2205SCH_3795SCH_3795
SENT220341 STY3896STY3895STY3896STY2421STY3896STY3896
SENT209261 T3637T3636T3637T0667T3637T3637
SCO SCO2746SCO2405SCO2747SCO2746SCO2746SCO2746
SBOY300268 SBO_2573SBO_2178SBO_3764SBO_3575SBO_2179SBO_2178SBO_1106
SAVE227882 SAV5319SAV7416SAV5318SAV7416SAV5319SAV5319
SAGA211110 GBS0115GBS0114GBS0115GBS0114GBS0115GBS0115
SAGA208435 SAG_0116SAG_0115SAG_0116SAG_0115SAG_0116SAG_0116
SAGA205921 SAK_0168SAK_0167SAK_0168SAK_0167SAK_0168SAK_0168
RXYL266117 RXYL_0946RXYL_3003RXYL_3002RXYL_0946RXYL_0946RXYL_0946
RSP101510 RHA1_RO04085RHA1_RO04085RHA1_RO00821RHA1_RO04085RHA1_RO04086RHA1_RO04085
RLEG216596 PRL110412RL2449RL1746RL4654RL4653RL4654RL4230
RFER338969 RFER_3129RFER_3129RFER_0439RFER_3129RFER_1902RFER_3129RFER_3129
REUT381666 H16_B1498H16_B1498H16_B1499H16_B1498H16_B1499H16_B1498
REUT264198 REUT_A1653REUT_A1653REUT_A1652REUT_A1653REUT_A1652REUT_A1653REUT_B4133
RETL347834 RHE_CH03694RHE_PB00077RHE_CH01211RHE_CH03989RHE_CH03990RHE_CH03989RHE_CH03694
PSYR223283 PSPTO_2368PSPTO_3489PSPTO_3488PSPTO_3489PSPTO_3488PSPTO_3489PSPTO_2639
PSYR205918 PSYR_2152PSYR_3264PSYR_2570PSYR_3264PSYR_3263PSYR_3264PSYR_2372
PSP117 RB3496RB3496RB3497RB3496RB3497RB3496RB3496
PPRO298386 PBPRB1871PBPRB1871PBPRB1558PBPRB1557PBPRB1870PBPRB1871PBPRB0473
PMUL272843 PM1039PM1326PM0154PM0155PM1040PM1039PM1379
PLUM243265 PLU0056PLU0057PLU0056PLU0057PLU0056PLU0056
PING357804 PING_2787PING_0341PING_0342PING_0341PING_0342PING_0341PING_2808
PFLU220664 PFL_2594PFL_2594PFL_2595PFL_2594PFL_2595PFL_2594PFL_2594
PFLU216595 PFLU2373PFLU3119PFLU3994PFLU2584PFLU2585PFLU2584PFLU4683
PFLU205922 PFL_4140PFL_1920PFL_4139PFL_4140PFL_4140PFL_4140
OIHE221109 OB2574OB2574OB2573OB2574OB2573OB2574OB2574
OANT439375 OANT_3347OANT_0291OANT_4066OANT_3347OANT_2914OANT_3347OANT_2808
MTHE264732 MOTH_0613MOTH_0613MOTH_0614MOTH_0613MOTH_0614MOTH_0613MOTH_0613
MSUC221988 MS0642MS0642MS0199MS0062MS0641MS0642MS0062
MSP400668 MMWYL1_3109MMWYL1_1986MMWYL1_3108MMWYL1_1987MMWYL1_1986MMWYL1_1986
MLOT266835 MLL1016MLL5705MLL2145MLL3598MLL7011MLL5657MLL3598
LLAC272623 L84240L84240L83296L84240L83296L84240L84240
LCHO395495 LCHO_2211LCHO_3312LCHO_3198LCHO_3312LCHO_3311LCHO_3312LCHO_3312
LACI272621 LBA1483LBA1482LBA1483LBA1482LBA1483LBA1483
KPNE272620 GKPORF_B1873GKPORF_B4919GKPORF_B3497GKPORF_B3496GKPORF_B1872GKPORF_B1873GKPORF_B1557
JSP290400 JANN_3088JANN_3088JANN_3089JANN_2595JANN_2596JANN_3088JANN_2595
HSOM228400 HSM_0557HSM_0557HSM_0558HSM_0090HSM_0103HSM_0104HSM_0823
HINF71421 HI_0823HI_0823HI_0503HI_0502HI_0824HI_0823HI_0502
HINF374930 CGSHIEE_07945CGSHIEE_07945CGSHIEE_00475CGSHIEE_00480CGSHIEE_07940CGSHIEE_07945CGSHIEE_00480
HINF281310 NTHI0988NTHI0630NTHI0631NTHI0630NTHI0989NTHI0988NTHI0630
HCHE349521 HCH_02469HCH_01167HCH_02470HCH_01167HCH_01169HCH_01167HCH_01167
GTHE420246 GTNG_3172GTNG_3172GTNG_3171GTNG_3172GTNG_3171GTNG_3172GTNG_3172
GKAU235909 GK3228GK3228GK3227GK3228GK1893GK1894GK3228
ESP42895 ENT638_2749ENT638_0289ENT638_0288ENT638_4115ENT638_2748ENT638_2749ENT638_2475
EFER585054 EFER_2234EFER_4283EFER_4284EFER_4048EFER_2233EFER_2234EFER_1124
ECOO157 YPHEMGLAZ5690RBSAMGLCMGLAARAG
ECOL83334 ECS3413ECS3041ECS5072ECS4691ECS3040ECS3041ECS2608
ECOL585397 ECED1_2974ECED1_4821ECED1_4820ECED1_4439ECED1_2595ECED1_2596ECED1_2165
ECOL585057 ECIAI39_2750ECIAI39_4511ECIAI39_4510ECIAI39_4354ECIAI39_2287ECIAI39_2288ECIAI39_1153
ECOL585056 ECUMN_2867ECUMN_2482ECUMN_4280ECUMN_4279ECUMN_2481ECUMN_2482ECUMN_2194
ECOL585055 EC55989_2833EC55989_2399EC55989_4225EC55989_4224EC55989_2398EC55989_2399EC55989_2076
ECOL585035 ECS88_2717ECS88_4588ECS88_4172ECS88_4171ECS88_2294ECS88_2295ECS88_1955
ECOL585034 ECIAI1_2600ECIAI1_2226ECIAI1_3934ECIAI1_3933ECIAI1_2225ECIAI1_2226ECIAI1_1984
ECOL481805 ECOLC_1130ECOLC_3939ECOLC_3940ECOLC_4245ECOLC_1500ECOLC_1499ECOLC_1735
ECOL469008 ECBD_1137ECBD_3943ECBD_3944ECBD_4281ECBD_1510ECBD_1509ECBD_1741
ECOL439855 ECSMS35_2700ECSMS35_4553ECSMS35_4552ECSMS35_4117ECSMS35_2295ECSMS35_2296ECSMS35_1286
ECOL413997 ECB_02439ECB_03959ECB_03958ECB_03635ECB_02077ECB_02078ECB_01868
ECOL409438 ECSE_2834ECSE_4385ECSE_4384ECSE_4039ECSE_2415ECSE_2416ECSE_2132
ECOL405955 APECO1_3984APECO1_2363APECO1_2364APECO1_2714APECO1_4403APECO1_4402APECO1_945
ECOL364106 UTI89_C2866UTI89_C4682UTI89_C4305UTI89_C4304UTI89_C2421UTI89_C2422UTI89_C2100
ECOL362663 ECP_2548ECP_4330ECP_3344ECP_3948ECP_2187ECP_2188ECP_1841
ECOL331111 ECE24377A_2832ECE24377A_2444ECE24377A_4266ECE24377A_4265ECE24377A_2443ECE24377A_2444ECE24377A_2131
ECOL316407 ECK2544:JW2531:B2547ECK4080:JW4048:B4087ECK4079:JW4047:B4086ECK3743:JW3728:B3749ECK2141:JW2135:B2148ECK2142:JW2136:B2149ECK1898:JW1888:B1900
ECOL199310 C3069C5093C5092C4677C2682C2683C2313
ECAR218491 ECA2272ECA0011ECA1461ECA0011ECA1461ECA0011ECA2272
CVIO243365 CV_3018CV_3018CV_3017CV_3018CV_3017CV_3018CV_3018
CTET212717 CTC_00905CTC_00905CTC_02349CTC_02350CTC_00862CTC_00861CTC_02350
CPHY357809 CPHY_3279CPHY_2010CPHY_1133CPHY_2010CPHY_2241CPHY_2242CPHY_3279
CPER289380 CPR_1342CPR_1601CPR_1601CPR_1343CPR_1342CPR_1601
CPER195103 CPF_1549CPF_1882CPF_1881CPF_1882CPF_1550CPF_1549CPF_1882
CPER195102 CPE1342CPE1630CPE1629CPE1630CPE1343CPE1342CPE1630
CNOV386415 NT01CX_0164NT01CX_0163NT01CX_0164NT01CX_0163NT01CX_0164NT01CX_0164
CDIF272563 CD0301CD0301CD1588CD0301CD1588CD0301CD0301
CBOT515621 CLJ_B1312CLJ_B1312CLJ_B1313CLJ_B1312CLJ_B1313CLJ_B1312CLJ_B1312
CBOT508765 CLL_A1529CLL_A1529CLL_A1530CLL_A1529CLL_A1530CLL_A1529CLL_A1529
CBEI290402 CBEI_4968CBEI_4968CBEI_4968CBEI_4432CBEI_4433CBEI_4433
BXEN266265 BXE_C1350BXE_C1350BXE_B1397BXE_C1350BXE_B0893BXE_C1350BXE_C1350
BWEI315730 BCERKBAB4_0581BCERKBAB4_0581BCERKBAB4_0582BCERKBAB4_0581BCERKBAB4_0582BCERKBAB4_0581BCERKBAB4_0581
BVIE269482 BCEP1808_3382BCEP1808_1389BCEP1808_1507BCEP1808_1389BCEP1808_1390BCEP1808_1389BCEP1808_0597
BTHU412694 BALH_0609BALH_0609BALH_0611BALH_0609BALH_0611BALH_0609BALH_0609
BTHU281309 BT9727_0578BT9727_0578BT9727_0579BT9727_0578BT9727_0579BT9727_0578BT9727_0578
BTHA271848 BTH_II1627BTH_I2434BTH_I2433BTH_II0211BTH_II0210BTH_II1627BTH_I1180
BSUI204722 BR_A0936BR_1631BR_1632BR_A0859BR_A1151BR_A1151
BSUB BSU35940BSU35940BSU35950BSU35940BSU35950BSU35940BSU35940
BSP376 BRADO4789BRADO1394BRADO1819BRADO1394BRADO1393BRADO1394
BSP36773 BCEP18194_B0624BCEP18194_B0624BCEP18194_B0886BCEP18194_A4569BCEP18194_A4570BCEP18194_A4569BCEP18194_A3704
BPUM315750 BPUM_3266BPUM_3266BPUM_3267BPUM_3266BPUM_3267BPUM_3266BPUM_3266
BPSE320373 BURPS668_A0286BURPS668_1909BURPS668_A0286BURPS668_A0285BURPS668_A0286BURPS668_3447
BPSE320372 BURPS1710B_B1956BURPS1710B_A2230BURPS1710B_B1956BURPS1710B_B1955BURPS1710B_B1956BURPS1710B_A3760
BPSE272560 BPSS0142BPSL1791BPSS0142BPSS0141BPSS0142BPSL2967
BMEL359391 BAB2_0299BAB1_1649BAB2_1110BAB2_0376BAB2_1110BAB2_1110
BMEL224914 BMEII0361BMEI0392BMEII0145BMEII0433BMEII0145BMEII0145
BLIC279010 BL02441BL02441BL02442BL02441BL02442BL02441BL02441
BJAP224911 BLL2677BLR2270BLL2676BLL5783BLL2677BLL5784
BHAL272558 BH2322BH3730BH3731BH3730BH2321BH2322BH2322
BCLA66692 ABC3546ABC3545ABC3546ABC3545ABC3546ABC3546
BCER572264 BCA_0705BCA_0705BCA_0706BCA_0705BCA_0706BCA_0705BCA_0705
BCER405917 BCE_0735BCE_0735BCE_0736BCE_0735BCE_0736BCE_0735BCE_0735
BCER315749 BCER98_0562BCER98_0562BCER98_0563BCER98_0562BCER98_0563BCER98_0562BCER98_0562
BCER288681 BCE33L0577BCE33L0577BCE33L0578BCE33L0577BCE33L0578BCE33L0577BCE33L0577
BCER226900 BC_0662BC_0662BC_0663BC_0662BC_0663BC_0662BC_0662
BCEN331272 BCEN2424_5039BCEN2424_5039BCEN2424_4818BCEN2424_1425BCEN2424_1426BCEN2424_1425BCEN2424_0622
BCEN331271 BCEN_3328BCEN_3328BCEN_3549BCEN_0943BCEN_0944BCEN_0943BCEN_0139
BCAN483179 BCAN_B0956BCAN_A1668BCAN_A1669BCAN_B0876BCAN_B1180BCAN_B1180
BANT592021 BAA_0751BAA_0751BAA_0752BAA_0751BAA_0752BAA_0751BAA_0751
BANT568206 BAMEG_3919BAMEG_3919BAMEG_3918BAMEG_3919BAMEG_3918BAMEG_3919BAMEG_3919
BANT261594 GBAA0667GBAA0667GBAA0668GBAA0667GBAA0668GBAA0667GBAA0667
BANT260799 BAS0634BAS0634BAS0635BAS0634BAS0635BAS0634BAS0634
BAMY326423 RBAM_033110RBAM_033110RBAM_033120RBAM_033110RBAM_033120RBAM_033110RBAM_033110
BAMB398577 BAMMC406_4967BAMMC406_4967BAMMC406_4722BAMMC406_1344BAMMC406_1345BAMMC406_1344BAMMC406_0547
BAMB339670 BAMB_4447BAMB_4447BAMB_4199BAMB_4447BAMB_1306BAMB_1305BAMB_0523
BABO262698 BRUAB2_0297BRUAB1_1619BRUAB2_1088BRUAB2_0372BRUAB2_1088BRUAB2_1088
AVAR240292 AVA_2172AVA_2172AVA_2173AVA_2172AVA_2173AVA_2172AVA_2172
ASAL382245 ASA_2395ASA_0215ASA_1969ASA_2395ASA_0216ASA_0215ASA_2395
APLE434271 APJL_1451APJL_1451APJL_1702APJL_1701APJL_1450APJL_1451APJL_1701
APLE416269 APL_1419APL_1419APL_1671APL_1670APL_1418APL_1419APL_1670
AMET293826 AMET_0587AMET_0587AMET_0588AMET_2813AMET_0587AMET_2813
AHYD196024 AHA_1904AHA_2310AHA_2311AHA_2310AHA_4098AHA_4099AHA_1904


Organism features enriched in list (features available for 148 out of the 157 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.001171541112
Disease:Anthrax 0.004028144
Disease:Bubonic_plague 0.000247966
Disease:Dysentery 0.004523856
Disease:Gastroenteritis 0.00011001013
Endospores:No 0.000014233211
Endospores:Yes 2.010e-93353
GC_Content_Range4:0-40 0.000110936213
GC_Content_Range4:40-60 3.402e-680224
GC_Content_Range7:30-40 0.000419927166
GC_Content_Range7:50-60 0.000012945107
Genome_Size_Range5:0-2 8.793e-166155
Genome_Size_Range5:2-4 0.000088532197
Genome_Size_Range5:4-6 1.983e-1180184
Genome_Size_Range5:6-10 5.405e-93047
Genome_Size_Range9:1-2 9.606e-126128
Genome_Size_Range9:2-3 0.000185416120
Genome_Size_Range9:4-5 8.242e-64296
Genome_Size_Range9:5-6 0.00003573888
Genome_Size_Range9:6-8 1.712e-62338
Genome_Size_Range9:8-10 0.001251779
Gram_Stain:Gram_Neg 0.004290397333
Habitat:Aquatic 0.00545891491
Habitat:Host-associated 0.002270739206
Habitat:Multiple 0.001536159178
Habitat:Terrestrial 0.00001181931
Motility:No 0.000045021151
Motility:Yes 4.185e-691267
Oxygen_Req:Anaerobic 0.007873717102
Oxygen_Req:Facultative 6.974e-1082201
Pathogenic_in:Human 0.000605670213
Pathogenic_in:No 0.004112145226
Shape:Coccus 0.0000292782
Shape:Rod 3.141e-13124347
Temp._range:Mesophilic 0.0087930129473



Back to top


ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 420
Effective number of orgs (counting one per cluster within 468 clusters): 329

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
XAUT78245 ncbi Xanthobacter autotrophicus Py21
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79010
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TPEN368408 ncbi Thermofilum pendens Hrk 50
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP94122 ncbi Shewanella sp. ANA-30
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSED425104 ncbi Shewanella sediminis HAW-EB30
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SONE211586 ncbi Shewanella oneidensis MR-10
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SLOI323850 ncbi Shewanella loihica PV-40
SLAC55218 Ruegeria lacuscaerulensis0
SGOR29390 Streptococcus gordonii Challis0
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2170
SDEG203122 ncbi Saccharophagus degradans 2-401
SBAL402882 ncbi Shewanella baltica OS1850
SBAL399599 ncbi Shewanella baltica OS1950
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170250
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170290
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-30
RPAL316058 ncbi Rhodopseudomonas palustris HaA20
RPAL316057 ncbi Rhodopseudomonas palustris BisB50
RPAL316056 ncbi Rhodopseudomonas palustris BisB180
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RPAL258594 ncbi Rhodopseudomonas palustris CGA0090
RMET266264 ncbi Ralstonia metallidurans CH340
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSTU379731 ncbi Pseudomonas stutzeri A15010
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PRUM264731 ncbi Prevotella ruminicola 230
PPUT76869 ncbi Pseudomonas putida GB-11
PPUT351746 ncbi Pseudomonas putida F11
PPUT160488 ncbi Pseudomonas putida KT24401
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMEN399739 ncbi Pseudomonas mendocina ymp0
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PENT384676 ncbi Pseudomonas entomophila L481
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER208964 ncbi Pseudomonas aeruginosa PAO11
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA141
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OCAR504832 ncbi Oligotropha carboxidovorans OM50
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP35761 Nocardioides sp.1
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16220
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP409 Methylobacterium sp.0
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM10
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
JSP375286 ncbi Janthinobacterium sp. Marseille0
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74211
GURA351605 ncbi Geobacter uraniireducens Rf40
GSUL243231 ncbi Geobacter sulfurreducens PCA0
GOXY290633 ncbi Gluconobacter oxydans 621H0
GMET269799 ncbi Geobacter metallireducens GS-150
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRAD243230 ncbi Deinococcus radiodurans R10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DHAF138119 ncbi Desulfitobacterium hafniense Y510
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
DARO159087 ncbi Dechloromonas aromatica RCB0
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CSP501479 Citreicella sp. SE450
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29010
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPET94624 Bordetella petrii0
BPER257313 ncbi Bordetella pertussis Tohama I0
BPAR257311 ncbi Bordetella parapertussis 128220
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BBUR224326 ncbi Borrelia burgdorferi B310
BBRO257310 ncbi Bordetella bronchiseptica RB500
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP62928 ncbi Azoarcus sp. BH720
ASP232721 ncbi Acidovorax sp. JS420
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAU360910 ncbi Bordetella avium 197N0
AAVE397945 ncbi Acidovorax citrulli AAC00-11
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G7341   EG11959   EG11958   EG10814   EG10594   EG10592   EG10058   
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
XAUT78245 XAUT_2414
WSUC273121
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTUR377629
TTHE300852
TTHE262724
TPEN368408
TKOD69014
TFUS269800
TELO197221
TDEN326298
TDEN292415
TCRU317025
TACI273075
SWOL335541
STRO369723
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP94122
SSP84588
SSP64471
SSP387093
SSP321332
SSP321327
SSP1148
SSP1131
SSOL273057
SSED425104
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SONE211586
SMUT210007
SMAR399550
SLOI323850
SLAC55218
SGOR29390
SFUM335543
SEPI176280
SEPI176279
SELO269084
SDEN318161
SDEG203122 SDE_0767
SBAL402882
SBAL399599
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037
SALA317655
SACI56780
SACI330779
RTYP257363
RSPH349102
RSPH349101
RSPH272943
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RPOM246200
RPAL316058
RPAL316057
RPAL316056
RPAL316055
RPAL258594
RMET266264
RMAS416276
RFEL315456
RCON272944
RCAS383372
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PTHE370438
PSTU379731
PSP56811
PSP312153
PRUM264731
PPUT76869 PPUTGB1_3491
PPUT351746 PPUT_3235
PPUT160488 PP_2455
PPEN278197
PMEN399739
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PHOR70601
PHAL326442
PGIN242619
PFUR186497
PENT384676 PSEEN1953
PDIS435591
PCRY335284
PCAR338963
PATL342610
PAST100379
PARS340102
PARC259536
PAER208964 PA1947
PAER208963 PA14_39330
PAER178306
PABY272844
OTSU357244
OCAR504832
NWIN323098
NSP387092
NSP35761 NOCA_0077
NSP103690
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NFAR247156
NEUT335283
NEUR228410
NARO279238
MXAN246197
MVAN350058
MTUB419947
MTUB336982
MTHE349307
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP409
MSED399549
MPUL272635
MPNE272634
MPET420662
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407
MMAR267377
MMAG342108
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MFLA265072
MEXT419610
MCAP340047
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAQU351348
MAER449447
MAEO419665
MACE188937
MABS561007
LXYL281090 LXX22220
LWEL386043
LSPH444177
LSAK314315
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LPLA220668
LMON265669
LMON169963
LMES203120
LJOH257314
LINT363253
LINT267671
LINT189518
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
JSP375286
ILOI283942
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032
HMUK485914
HMAR272569
HHEP235279
HHAL349124
HDUC233412
HBUT415426
HARS204773
HACI382638
GVIO251221 GLR1730
GURA351605
GSUL243231
GOXY290633
GMET269799
GFOR411154
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855
FSP106370
FRANT
FPHI484022
FNOD381764
FMAG334413
FJOH376686
FALN326424
ERUM302409
ERUM254945
ELIT314225
EFAE226185
ECHA205920
ECAN269484
DVUL882
DSP255470
DSP216389
DRAD243230
DPSY177439
DOLE96561
DNOD246195
DHAF138119
DETH243164
DDES207559
DARO159087
CVES412965
CTRA471473
CTRA471472
CTEP194439
CSUL444179
CSP78
CSP501479
CRUT413404
CPSY167879
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPEL335992
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CJAP155077
CHYD246194
CHUT269798
CHOM360107
CFET360106
CFEL264202
CEFF196164
CDIP257309
CDES477974
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT536232
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CBLO291272
CBLO203907
CACE272562
CABO218497
BTUR314724
BTRI382640
BTHE226186
BSP107806
BQUI283165
BPET94624
BPER257313
BPAR257311
BLON206672
BHER314723
BHEN283166
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BBUR224326
BBRO257310
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AURANTIMONAS
ASP76114
ASP62977
ASP62928
ASP232721
APHA212042
APER272557
AORE350688
ANAE240017
AMAR329726
AMAR234826
ALAI441768
AFUL224325
AFER243159
AEHR187272
ADEH290397
ACEL351607
ABUT367737
ABOR393595
ABAU360910
AAVE397945 AAVE_2251
AAEO224324


Organism features enriched in list (features available for 392 out of the 420 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.002194563112
Disease:Gastroenteritis 0.0011066313
Endospores:No 0.0000333163211
Endospores:Yes 1.546e-71853
GC_Content_Range4:0-40 7.193e-7169213
GC_Content_Range4:40-60 0.0001383131224
GC_Content_Range7:30-40 0.0000201132166
GC_Content_Range7:50-60 1.758e-651107
Genome_Size_Range5:0-2 3.042e-22148155
Genome_Size_Range5:2-4 0.0010512148197
Genome_Size_Range5:4-6 1.905e-1483184
Genome_Size_Range5:6-10 6.492e-91347
Genome_Size_Range9:0-1 0.00001632727
Genome_Size_Range9:1-2 1.602e-16121128
Genome_Size_Range9:2-3 0.000548895120
Genome_Size_Range9:4-5 3.295e-64596
Genome_Size_Range9:5-6 2.645e-73888
Genome_Size_Range9:6-8 5.433e-71138
Genome_Size_Range9:8-10 0.006260829
Gram_Stain:Gram_Neg 0.0074730212333
Habitat:Aquatic 0.00273857291
Habitat:Host-associated 0.0050966151206
Habitat:Multiple 0.0008993104178
Habitat:Specialized 0.00885664353
Habitat:Terrestrial 0.00003571031
Motility:No 0.0002745118151
Motility:Yes 0.0000122156267
Optimal_temp.:30-37 0.00634501718
Oxygen_Req:Anaerobic 0.008217078102
Oxygen_Req:Facultative 7.125e-7109201
Pathogenic_in:Animal 0.00783003666
Pathogenic_in:Human 0.0025293129213
Shape:Coccus 0.00085356782
Shape:Irregular_coccus 0.00104461717
Shape:Rod 2.728e-13194347
Shape:Sphere 0.00444531819
Shape:Spiral 0.00074043134
Temp._range:Mesophilic 0.0066866308473



Back to top


ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 3
Effective number of orgs (counting one per cluster within 468 clusters): 3

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
TMAR243274 ncbi Thermotoga maritima MSB8 0.00247258417
LLAC272623 ncbi Lactococcus lactis lactis Il1403 0.00423629087
CTET212717 ncbi Clostridium tetani E88 0.008460510027


Names of the homologs of the genes in the group in each of these orgs
  G7341   EG11959   EG11958   EG10814   EG10594   EG10592   EG10058   
TMAR243274 TM_0115TM_0115TM_0955TM_0956TM_0955TM_0956TM_0956
LLAC272623 L84240L84240L83296L84240L83296L84240L84240
CTET212717 CTC_00905CTC_00905CTC_02349CTC_02350CTC_00862CTC_00861CTC_02350


Organism features enriched in list (features available for 3 out of the 3 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Tetanus 0.005145811



Back to top


ORGANISMS DEPLETED FOR GROUP:




Back to top


PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GALACTITOLCAT-PWY (galactitol degradation)73620.5012
GLUTAMINDEG-PWY (glutamine degradation I)1911100.4961
XYLCAT-PWY (xylose degradation I)2171170.4836
PWY-6196 (serine racemization)102730.4725
RIBOKIN-PWY (ribose degradation)2791330.4661
PWY-6374 (vibriobactin biosynthesis)77600.4560
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))121790.4533
GLUCUROCAT-PWY (β-D-glucuronide and D-glucuronate degradation)2081090.4436
GLUTDEG-PWY (glutamate degradation II)1941040.4400
GLUAMCAT-PWY (N-acetylglucosamine degradation I)3561450.4130
GLUCARDEG-PWY (D-glucarate degradation I)152860.4106
PWY0-1314 (fructose degradation)2241090.4049



Back to top


PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11959   EG11958   EG10814   EG10594   EG10592   EG10058   
G73410.9995580.9993470.9994210.9994860.9996420.999471
EG119590.999590.9996740.9996080.9996740.999456
EG119580.9996370.9994330.9994620.999441
EG108140.9995710.9996690.99963
EG105940.9997880.999365
EG105920.999489
EG10058



Back to top


PAIRWISE BLAST SCORES:

  G7341   EG11959   EG11958   EG10814   EG10594   EG10592   EG10058   
G73410.0f05.6e-80-1.7e-80-1.1e-85-
EG11959-0.0f0-4.0e-95-2.1e-96-
EG11958--0.0f0----
EG10814---0.0f0-2.7e-1127.1e-105
EG10594----0.0f0--
EG10592---1.4e-108-0.0f0-
EG10058---7.1e-105--0.0f0



Back to top


PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ABC-42-CPLX (D-allose ABC transporter) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.286, average score: 0.993)
  Genes in pathway or complex:
             0.4744 0.0885 EG12458 (alsB) YJCX-MONOMER (AlsB)
   *in cand* 0.9996 0.9993 EG11958 (alsC) YJCV-MONOMER (AlsC)
   *in cand* 0.9997 0.9995 EG11959 (alsA) YJCW-MONOMER (AlsA)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9994 EG10058 (araG) ARAG-MONOMER (AraG)
   *in cand* 0.9997 0.9995 EG10592 (mglA) MGLA-MONOMER (MglA)
   *in cand* 0.9996 0.9994 EG10594 (mglC) MGLC-MONOMER (MglC)
   *in cand* 0.9997 0.9994 EG10814 (rbsA) RBSA-MONOMER (RbsA)
   *in cand* 0.9996 0.9993 G7341 (yphE) YPHE-MONOMER (YphE)

- ABC-18-CPLX (galactose ABC transporter) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.286, average score: 1.000)
  Genes in pathway or complex:
             0.9988 0.9976 EG10593 (mglB) MGLB-MONOMER (MglB)
   *in cand* 0.9996 0.9994 EG10594 (mglC) MGLC-MONOMER (MglC)
   *in cand* 0.9997 0.9995 EG10592 (mglA) MGLA-MONOMER (MglA)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9994 EG10058 (araG) ARAG-MONOMER (AraG)
   *in cand* 0.9997 0.9994 EG10814 (rbsA) RBSA-MONOMER (RbsA)
   *in cand* 0.9996 0.9993 EG11958 (alsC) YJCV-MONOMER (AlsC)
   *in cand* 0.9997 0.9995 EG11959 (alsA) YJCW-MONOMER (AlsA)
   *in cand* 0.9996 0.9993 G7341 (yphE) YPHE-MONOMER (YphE)



Back to top


GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10592 EG10594 (centered at EG10592)
G7341 (centered at G7341)
EG10814 (centered at EG10814)
EG10058 (centered at EG10058)
EG11958 EG11959 (centered at EG11959)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7341   EG11959   EG11958   EG10814   EG10594   EG10592   EG10058   
172/623183/623194/623176/623180/623179/623176/623
AAUR290340:2:Tyes1505-0---1505
AAVE397945:0:Tyes0------
ABAC204669:0:Tyes1-01-11
ACAU438753:0:Tyes001--00
ACRY349163:8:Tyes633-0-560--
AHYD196024:0:Tyes0399400399208820890
AMET293826:0:Tyes0012178-02178
APLE416269:0:Tyes1127327201272
APLE434271:0:Tno1127327201272
ASAL382245:5:Tyes2110016992110102110
ASP1667:3:Tyes86-0--81-
AVAR240292:3:Tyes0010100
BABO262698:0:Tno-0-74474744744
BABO262698:1:Tno--0----
BAMB339670:2:Tno2462460246---
BAMB339670:3:Tno----8007990
BAMB398577:2:Tno2382380----
BAMB398577:3:Tno---8048058040
BAMY326423:0:Tyes0010100
BANT260799:0:Tno0010100
BANT261594:2:Tno0010100
BANT568206:2:Tyes1101011
BANT592021:2:Tno0010100
BCAN483179:0:Tno-76--0291291
BCAN483179:1:Tno--01---
BCEN331271:1:Tno00221----
BCEN331271:2:Tno---8198208190
BCEN331272:2:Tyes2212210----
BCEN331272:3:Tyes---8028038020
BCER226900:1:Tyes0010100
BCER288681:0:Tno0010100
BCER315749:1:Tyes0010100
BCER405917:1:Tyes0010100
BCER572264:1:Tno0010100
BCLA66692:0:Tyes-101011
BHAL272558:0:Tyes1142414251424011
BJAP224911:0:Fyes4100409-35374103538
BLIC279010:0:Tyes0010100
BMAL243160:1:Tno-101149--1149
BMAL320388:1:Tno-121212110--0
BMAL320389:1:Tyes-012393--2393
BMEL224914:0:Tno-227-030000
BMEL224914:1:Tno--0----
BMEL359391:0:Tno-0-74074740740
BMEL359391:1:Tno--0----
BOVI236:0:Tyes-0-----
BOVI236:1:Tyes--0101-
BPSE272560:0:Tyes-1-101-
BPSE272560:1:Tyes--0---1198
BPSE320372:0:Tno-1-101-
BPSE320372:1:Tno--0---1424
BPSE320373:0:Tno-1-101-
BPSE320373:1:Tno--0---1478
BPUM315750:0:Tyes0010100
BSP36773:1:Tyes00263----
BSP36773:2:Tyes---8808818800
BSP376:0:Tyes3233140510-1
BSUB:0:Tyes0010100
BSUI204722:0:Tyes-76--0278278
BSUI204722:1:Tyes--01---
BSUI470137:0:Tno-76--0--
BSUI470137:1:Tno--01-1-
BTHA271848:0:Tno1411--101411-
BTHA271848:1:Tno-12301229---0
BTHU281309:1:Tno0010100
BTHU412694:1:Tno0010100
BVIE269482:6:Tyes0------
BVIE269482:7:Tyes-7889057887897880
BWEI315730:4:Tyes0010100
BXEN266265:0:Tyes00-0-00
BXEN266265:1:Tyes--0-494--
CAULO:0:Tyes001-1-0
CBEI290402:0:Tyes533533-533011
CBOT508765:1:Tyes0010100
CBOT515621:2:Tyes0010100
CDIF272563:1:Tyes0013200132000
CGLU196627:0:Tyes001--00
CNOV386415:0:Tyes-101011
CPER195102:1:Tyes028928828910289
CPER195103:0:Tno032332232310323
CPER289380:3:Tyes0253-25310253
CPHY357809:0:Tyes21258680868109610972125
CSAL290398:0:Tyes681-0-0681681
CTET212717:0:Tyes393913651366101366
CVIO243365:0:Tyes1101011
DGEO319795:0:Tyes00-0-00
DRED349161:0:Tyes--01-1-
DSHI398580:5:Tyes1101---
ECAR218491:0:Tyes2284014770147702284
ECOL199310:0:Tno7462739273823303653660
ECOL316407:0:Tno6462164216316052472480
ECOL331111:6:Tno667298205320522972980
ECOL362663:0:Tno7112481151221113523530
ECOL364106:1:Tno7662563219521943213220
ECOL405955:2:Tyes7382381238020113103110
ECOL409438:6:Tyes7182321232019472912920
ECOL413997:0:Tno5802134213317872132140
ECOL439855:4:Tno139531623161275899910000
ECOL469008:0:Tno0278127823140376375605
ECOL481805:0:Tno0280628073136373372604
ECOL585034:0:Tno617247192419232462470
ECOL585035:0:Tno7402538215121503243250
ECOL585055:0:Tno743316210621053153160
ECOL585056:2:Tno683297208320822962970
ECOL585057:0:Tno1571335733563189111611170
ECOL585397:0:Tno7982609260822274214220
ECOL83334:0:Tno826445254521354444450
ECOLI:0:Tno6622220221918792512520
ECOO157:0:Tno791410247521124094100
EFER585054:1:Tyes1097312331242897109610970
ESP42895:1:Tyes2480103869247924802202
FNUC190304:0:Tyes00-010-
GKAU235909:1:Tyes1360136013591360011360
GTHE420246:1:Tyes1101011
GVIO251221:0:Tyes--0----
HAUR316274:2:Tyes0-1549----
HCHE349521:0:Tyes1252012530100
HINF281310:0:Tyes3360103373360
HINF374930:0:Tyes1309130901130813091
HINF71421:0:Tno318318103193180
HMOD498761:0:Tyes0-1010-
HSOM205914:1:Tyes-1820-988989-
HSOM228400:0:Tno47647647701314744
JSP290400:1:Tyes501501502015010
KPNE272620:2:Tyes3083274190119003073080
KRAD266940:2:Fyes2278-0-0-3079
LACI272621:0:Tyes-101011
LCAS321967:1:Tyes-01010-
LCHO395495:0:Tyes011079921107110611071107
LLAC272622:5:Tyes00-0-00
LLAC272623:0:Tyes1101011
LXYL281090:0:Tyes0------
MLOT266835:2:Tyes036548682000474936152000
MSME246196:0:Tyes393-564-0--
MSP164756:1:Tno--0-0--
MSP164757:0:Tno--0-0-1
MSP189918:2:Tyes--0-0--
MSP266779:3:Tyes288428842885--02884
MSP400668:0:Tyes114901148-100
MSUC221988:0:Tyes60360314106026030
MTHE264732:0:Tyes0010100
NSP35761:1:Tyes--0----
OANT439375:4:Tyes536-12525361055360
OANT439375:5:Tyes-0-----
OIHE221109:0:Tyes1101011
PACN267747:0:Tyes0-1--0-
PAER208963:0:Tyes0------
PAER208964:0:Tno0------
PENT384676:0:Tyes0------
PFLU205922:0:Tyes2231022302231-22312231
PFLU216595:1:Tyes071615661931941932225
PFLU220664:0:Tyes0010100
PING357804:0:Tyes2291010102312
PLUM243265:0:Fyes-010100
PMOB403833:0:Tyes001-1-0
PMUL272843:1:Tyes8851172018868851225
PNAP365044:8:Tyes--0-0--
PPRO298386:1:Tyes1397139710841083139613970
PPUT160488:0:Tno0------
PPUT351746:0:Tyes0------
PPUT76869:0:Tno0------
PSP117:0:Tyes0010100
PSP296591:2:Tyes--0-0--
PSYR205918:0:Tyes01111417111111101111217
PSYR223283:2:Tyes010991098109910981099267
RDEN375451:4:Tyes11010--
RETL347834:0:Tyes-0-----
RETL347834:5:Tyes2461-02751275227512461
REUT264198:2:Tyes------0
REUT264198:3:Tyes110101-
REUT381666:1:Tyes00101-0
RFER338969:1:Tyes2690269002690146326902690
RLEG216596:4:Tyes0------
RLEG216596:6:Tyes-70302901290029012480
RRUB269796:1:Tyes--0-0-1
RSOL267608:1:Tyes-0-0101540
RSP101510:3:Fyes32513251032513252-3251
RSP357808:0:Tyes-0-0-0-
RXYL266117:0:Tyes0204820470-00
SAGA205921:0:Tno-101011
SAGA208435:0:Tno-101011
SAGA211110:0:Tyes-101011
SAVE227882:1:Fyes1212202122-11
SBOY300268:1:Tyes1389101625262348101710160
SCO:2:Fyes3480349348-348348
SDEG203122:0:Tyes0------
SDYS300267:1:Tyes-280626850957-0
SENT209261:0:Tno-283828372838028382838
SENT220341:0:Tno-137213711372013721372
SENT295319:0:Tno-2934-2934029342934
SENT321314:2:Tno1613161316141613016131613
SENT454169:2:Tno1173317341733011733
SERY405948:0:Tyes3663366303663-36631076
SFLE198214:0:Tyes61527018262702692700
SFLE373384:0:Tno621262171919362612620
SGLO343509:3:Tyes3593590359360359359
SHAE279808:0:Tyes-01010-
SHAL458817:0:Tyes1483148310148400
SHIGELLA:0:Tno61125916752592582590
SMED366394:1:Tyes--0----
SMED366394:2:Tyes-1150--6566570
SMED366394:3:Tyes0--0---
SMEL266834:1:Tyes-465--9339320
SMEL266834:2:Tyes623-0623---
SPEA398579:0:Tno1840184010183900
SPRO399741:1:Tyes32390392639275495481237
SSAP342451:2:Tyes-10101-
SSON300269:1:Tyes1345936256825679359360
SSP292414:1:Tyes1-0-0--
SSP292414:2:Tyes-0-----
SSP644076:3:Fyes1---0--
SSP644076:4:Fyes-01----
STHE292459:0:Tyes1101-11
STYP99287:1:Tyes1168516861685011685
TDEN243275:0:Tyes-1--01-
TERY203124:0:Tyes1---01-
TLET416591:0:Tyes0-11155115611551155
TMAR243274:0:Tyes00822823822823823
TPAL243276:0:Tyes0---10-
TPET390874:0:Tno0098609860-
TPSE340099:0:Tyes-101011
TROS309801:0:Tyes00180018000
TSP1755:0:Tyes814787107
TSP28240:0:Tyes0141140141-141141
TTEN273068:0:Tyes530530531015300
VCHO:0:Tyes00--10-
VCHO:1:Fyes--10--0
VCHO345073:0:Tno--01--1
VCHO345073:1:Tno00--10-
VEIS391735:1:Tyes1028102819701028063689
VFIS312309:2:Tyes-010100
VPAR223926:0:Tyes58810101588
VVUL196600:1:Tyes1141741601416
VVUL216895:0:Tno0010118111820
XAUT78245:1:Tyes----0--
YENT393305:1:Tyes2714271410271327141946
YPES187410:5:Tno1512221127361512151115120
YPES214092:3:Tno539029135395405391248
YPES349746:2:Tno2772038292772277327721660
YPES360102:3:Tyes510035425105115102252
YPES377628:2:Tno756145719217567557560
YPES386656:2:Tno906027789069059062120
YPSE273123:2:Tno017162282010654
YPSE349747:2:Tno1640031831640163916402139



Back to top