CANDIDATE ID: 124

CANDIDATE ID: 124

NUMBER OF GENES: 6
AVERAGE SCORE:    9.9974393e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    3.3333333e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG12837 (yhdZ) (b3271)
   Products of gene:
     - YHDZ-MONOMER (YhdZ)
     - ABC-52-CPLX (YhdW/YhdX/YhdY/YhdZ ABC transporter)

- EG12836 (yhdY) (b3270)
   Products of gene:
     - YHDY-MONOMER (YhdY)
     - ABC-52-CPLX (YhdW/YhdX/YhdY/YhdZ ABC transporter)

- EG12835 (yhdX) (b3269)
   Products of gene:
     - YHDX-MONOMER (YhdX)
     - ABC-52-CPLX (YhdW/YhdX/YhdY/YhdZ ABC transporter)

- EG12834 (yhdW) (b3268)
   Products of gene:
     - YHDW-MONOMER (YhdW)
     - ABC-52-CPLX (YhdW/YhdX/YhdY/YhdZ ABC transporter)

- EG12663 (gltL) (b0652)
   Products of gene:
     - GLTL-MONOMER (GltL)
     - ABC-13-CPLX (GltIJKL glutamate ABC transporter)
       Reactions:
        ATP + L-aspartate[periplasmic space] + H2O  ->  L-aspartate[cytosol] + ADP + phosphate
        ATP + L-glutamate[periplasmic space] + H2O  ->  ADP + phosphate + L-glutamate[cytosol]

- EG12661 (gltJ) (b0654)
   Products of gene:
     - GLTJ-MONOMER (GltJ)
     - ABC-13-CPLX (GltIJKL glutamate ABC transporter)
       Reactions:
        ATP + L-aspartate[periplasmic space] + H2O  ->  L-aspartate[cytosol] + ADP + phosphate
        ATP + L-glutamate[periplasmic space] + H2O  ->  ADP + phosphate + L-glutamate[cytosol]



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ORGANISMS CONTAINING AT LEAST 5 GENES FROM THE GROUP:

Total number of orgs: 184
Effective number of orgs (counting one per cluster within 468 clusters): 132

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317586
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329536
YPES386656 ncbi Yersinia pestis Pestoides F6
YPES377628 ncbi Yersinia pestis Nepal5166
YPES360102 ncbi Yersinia pestis Antiqua6
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80816
XAUT78245 ncbi Xanthobacter autotrophicus Py25
VVUL216895 ncbi Vibrio vulnificus CMCP65
VVUL196600 ncbi Vibrio vulnificus YJ0165
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106336
VFIS312309 ncbi Vibrio fischeri ES1145
VEIS391735 ncbi Verminephrobacter eiseniae EF01-26
VCHO345073 ncbi Vibrio cholerae O3955
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169615
TERY203124 ncbi Trichodesmium erythraeum IMS1015
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT26
SSP644076 Silicibacter sp. TrichCH4B5
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)5
SSP321327 ncbi Synechococcus sp. JA-3-3Ab6
SSP292414 ncbi Ruegeria sp. TM10406
SSON300269 ncbi Shigella sonnei Ss0466
SPRO399741 ncbi Serratia proteamaculans 5686
SMEL266834 ncbi Sinorhizobium meliloti 10216
SMED366394 ncbi Sinorhizobium medicae WSM4196
SLAC55218 Ruegeria lacuscaerulensis5
SHIGELLA ncbi Shigella flexneri 2a str. 2457T6
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB5
SFLE373384 ncbi Shigella flexneri 5 str. 84016
SFLE198214 ncbi Shigella flexneri 2a str. 3016
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4766
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B676
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91506
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SELO269084 ncbi Synechococcus elongatus PCC 63015
SBOY300268 ncbi Shigella boydii Sb2276
SAVE227882 ncbi Streptomyces avermitilis MA-46806
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170255
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170295
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.15
RSP357808 ncbi Roseiflexus sp. RS-16
RSP101510 ncbi Rhodococcus jostii RHA16
RSOL267608 ncbi Ralstonia solanacearum GMI10006
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111706
RPOM246200 ncbi Ruegeria pomeroyi DSS-36
RPAL316058 ncbi Rhodopseudomonas palustris HaA26
RPAL316057 ncbi Rhodopseudomonas palustris BisB56
RPAL316056 ncbi Rhodopseudomonas palustris BisB186
RPAL316055 ncbi Rhodopseudomonas palustris BisA536
RPAL258594 ncbi Rhodopseudomonas palustris CGA0096
RMET266264 ncbi Ralstonia metallidurans CH346
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38416
RFER338969 ncbi Rhodoferax ferrireducens T1186
REUT381666 ncbi Ralstonia eutropha H166
RETL347834 ncbi Rhizobium etli CFN 426
RCAS383372 ncbi Roseiflexus castenholzii DSM 139416
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30006
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a6
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-16
PSP296591 ncbi Polaromonas sp. JS6666
PPUT76869 ncbi Pseudomonas putida GB-16
PPUT351746 ncbi Pseudomonas putida F16
PPUT160488 ncbi Pseudomonas putida KT24406
PPRO298386 ncbi Photobacterium profundum SS96
PNAP365044 ncbi Polaromonas naphthalenivorans CJ26
PMEN399739 ncbi Pseudomonas mendocina ymp5
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO15
PING357804 ncbi Psychromonas ingrahamii 376
PFLU220664 ncbi Pseudomonas fluorescens Pf-56
PFLU216595 ncbi Pseudomonas fluorescens SBW256
PFLU205922 ncbi Pseudomonas fluorescens Pf0-16
PENT384676 ncbi Pseudomonas entomophila L486
PCRY335284 ncbi Psychrobacter cryohalolentis K55
PARC259536 ncbi Psychrobacter arcticus 273-46
PAER208964 ncbi Pseudomonas aeruginosa PAO16
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA146
OCAR504832 ncbi Oligotropha carboxidovorans OM56
OANT439375 ncbi Ochrobactrum anthropi ATCC 491886
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2556
NSP103690 ncbi Nostoc sp. PCC 71206
NHAM323097 ncbi Nitrobacter hamburgensis X145
MSP409 Methylobacterium sp.6
MSP400668 ncbi Marinomonas sp. MWYL16
MSP266779 ncbi Chelativorans sp. BNC16
MSME246196 ncbi Mycobacterium smegmatis MC2 1555
MPET420662 ncbi Methylibium petroleiphilum PM16
MLOT266835 ncbi Mesorhizobium loti MAFF3030996
MEXT419610 ncbi Methylobacterium extorquens PA15
LREU557436 ncbi Lactobacillus reuteri DSM 200165
LJOH257314 ncbi Lactobacillus johnsonii NCC 5336
LGAS324831 ncbi Lactobacillus gasseri ATCC 333235
LCHO395495 ncbi Leptothrix cholodnii SP-66
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785786
JSP290400 ncbi Jannaschia sp. CCS16
HMOD498761 ncbi Heliobacterium modesticaldum Ice16
HCHE349521 ncbi Hahella chejuensis KCTC 23965
HARS204773 ncbi Herminiimonas arsenicoxydans5
GKAU235909 ncbi Geobacillus kaustophilus HTA4266
ESP42895 Enterobacter sp.6
EFER585054 ncbi Escherichia fergusonii ATCC 354696
ECOO157 ncbi Escherichia coli O157:H7 EDL9336
ECOL83334 Escherichia coli O157:H76
ECOL585397 ncbi Escherichia coli ED1a6
ECOL585057 ncbi Escherichia coli IAI396
ECOL585056 ncbi Escherichia coli UMN0266
ECOL585055 ncbi Escherichia coli 559896
ECOL585035 ncbi Escherichia coli S886
ECOL585034 ncbi Escherichia coli IAI16
ECOL481805 ncbi Escherichia coli ATCC 87396
ECOL469008 ncbi Escherichia coli BL21(DE3)6
ECOL439855 ncbi Escherichia coli SMS-3-56
ECOL413997 ncbi Escherichia coli B str. REL6066
ECOL409438 ncbi Escherichia coli SE116
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI896
ECOL362663 ncbi Escherichia coli 5366
ECOL331111 ncbi Escherichia coli E24377A6
ECOL316407 ncbi Escherichia coli K-12 substr. W31106
ECOL199310 ncbi Escherichia coli CFT0736
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10436
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough6
DSHI398580 ncbi Dinoroseobacter shibae DFL 125
DRAD243230 ncbi Deinococcus radiodurans R15
DPSY177439 ncbi Desulfotalea psychrophila LSv546
DHAF138119 ncbi Desulfitobacterium hafniense Y515
DGEO319795 ncbi Deinococcus geothermalis DSM 113005
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G206
CVIO243365 ncbi Chromobacterium violaceum ATCC 124726
CSP501479 Citreicella sp. SE455
CSAL290398 ncbi Chromohalobacter salexigens DSM 30436
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10625
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80525
BWEI315730 ncbi Bacillus weihenstephanensis KBAB46
BVIE269482 ncbi Burkholderia vietnamiensis G46
BTRI382640 ncbi Bartonella tribocorum CIP 1054765
BTHU412694 ncbi Bacillus thuringiensis Al Hakam6
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-276
BTHA271848 ncbi Burkholderia thailandensis E2646
BSUI470137 ncbi Brucella suis ATCC 234455
BSUI204722 ncbi Brucella suis 13305
BSUB ncbi Bacillus subtilis subtilis 1686
BSP376 Bradyrhizobium sp.6
BSP36773 Burkholderia sp.6
BQUI283165 ncbi Bartonella quintana Toulouse5
BPUM315750 ncbi Bacillus pumilus SAFR-0326
BPSE320373 ncbi Burkholderia pseudomallei 6686
BPSE320372 ncbi Burkholderia pseudomallei 1710b6
BPSE272560 ncbi Burkholderia pseudomallei K962436
BPET94624 Bordetella petrii6
BPER257313 ncbi Bordetella pertussis Tohama I6
BPAR257311 ncbi Bordetella parapertussis 128226
BOVI236 Brucella ovis5
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M5
BMAL320389 ncbi Burkholderia mallei NCTC 102476
BMAL320388 ncbi Burkholderia mallei SAVP16
BMAL243160 ncbi Burkholderia mallei ATCC 233445
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1106
BHEN283166 ncbi Bartonella henselae Houston-15
BCLA66692 ncbi Bacillus clausii KSM-K166
BCER572264 ncbi Bacillus cereus 03BB1026
BCER405917 Bacillus cereus W6
BCER315749 ncbi Bacillus cytotoxicus NVH 391-986
BCER288681 ncbi Bacillus cereus E33L6
BCEN331272 ncbi Burkholderia cenocepacia HI24246
BCEN331271 ncbi Burkholderia cenocepacia AU 10546
BCAN483179 ncbi Brucella canis ATCC 233655
BBRO257310 ncbi Bordetella bronchiseptica RB506
BBAC360095 ncbi Bartonella bacilliformis KC5835
BAMY326423 ncbi Bacillus amyloliquefaciens FZB426
BAMB398577 ncbi Burkholderia ambifaria MC40-66
BAMB339670 ncbi Burkholderia ambifaria AMMD6
AVAR240292 ncbi Anabaena variabilis ATCC 294136
ASP62977 ncbi Acinetobacter sp. ADP15
ASP62928 ncbi Azoarcus sp. BH726
ASP232721 ncbi Acidovorax sp. JS425
ASP1667 Arthrobacter sp.5
AMAR329726 ncbi Acaryochloris marina MBIC110176
ACAU438753 ncbi Azorhizobium caulinodans ORS 5716
ABAU360910 ncbi Bordetella avium 197N5
AAVE397945 ncbi Acidovorax citrulli AAC00-15
AAUR290340 ncbi Arthrobacter aurescens TC15


Names of the homologs of the genes in the group in each of these orgs
  EG12837   EG12836   EG12835   EG12834   EG12663   EG12661   
YPSE349747 YPSIP31758_2923YPSIP31758_2922YPSIP31758_4164YPSIP31758_2920YPSIP31758_2923YPSIP31758_2921
YPSE273123 YPTB1105YPTB1106YPTB1107YPTB1108YPTB1105YPTB1107
YPES386656 YPDSF_2641YPDSF_2640YPDSF_2639YPDSF_2638YPDSF_2641YPDSF_2639
YPES377628 YPN_1097YPN_1098YPN_1099YPN_1100YPN_1097YPN_1099
YPES360102 YPA_2485YPA_2484YPA_2483YPA_2482YPA_2485YPA_2483
YPES349746 YPANGOLA_A1839YPANGOLA_A1838YPANGOLA_A1835YPANGOLA_A1839YPANGOLA_A1837
YPES214092 YPO2612YPO2613YPO2615YPO2612YPO2614
YPES187410 Y1186Y1187Y1188Y1189Y1186Y1188
YENT393305 YE3836YE3835YE3834YE3833YE2994YE2992
XAUT78245 XAUT_4549XAUT_4548XAUT_4547XAUT_4546XAUT_4549
VVUL216895 VV1_2706VV1_2705VV1_2704VV1_2703VV1_2706
VVUL196600 VV1554VV1555VV1556VV1557VV1554
VPAR223926 VP1623VP1622VP1621VP1620VP1623VP3066
VFIS312309 VF1535VF1534VF1533VF1532VF1535
VEIS391735 VEIS_3332VEIS_3479VEIS_0791VEIS_1219VEIS_0719VEIS_1218
VCHO345073 VC0395_A0972VC0395_A0973VC0395_A0974VC0395_A0975VC0395_A0972
VCHO VC1359VC1360VC1361VC1362VC1359
TERY203124 TERY_2001TERY_2000TERY_1999TERY_1998TERY_1999
STYP99287 STM0662STM1952STM0664STM0665STM0662STM0664
SSP644076 SCH4B_1082SCH4B_1081SCH4B_1080SCH4B_1079SCH4B_1082
SSP321332 CYB_0933CYB_0930CYB_0931CYB_0932CYB_0933
SSP321327 CYA_1285CYA_1282CYA_1283CYA_1284CYA_1285CYA_1283
SSP292414 TM1040_0297TM1040_0296TM1040_0295TM1040_0294TM1040_0297TM1040_0295
SSON300269 SSO_3412SSO_3411SSO_0608SSO_3409SSO_0606SSO_0608
SPRO399741 SPRO_1211SPRO_1212SPRO_0823SPRO_1214SPRO_1211SPRO_1213
SMEL266834 SMC02121SMC02120SMC02119SMC02118SMC03135SMC02119
SMED366394 SMED_1105SMED_1106SMED_1107SMED_1108SMED_1105SMED_1107
SLAC55218 SL1157_1611SL1157_1610SL1157_1609SL1157_1608SL1157_1611
SHIGELLA YHDZYHDYGLTJYHDWGLTLGLTJ
SFUM335543 SFUM_0817SFUM_3165SFUM_2051SFUM_3166SFUM_3164
SFLE373384 SFV_3293SFV_3292SFV_0672SFV_3290SFV_0674SFV_0672
SFLE198214 AAN44773.1AAN44772.1AAN44769.1AAN44977.1AAN42266.1AAN42264.1
SENT454169 SEHA_C0779SEHA_C2167SEHA_C0781SEHA_C0783SEHA_C0779SEHA_C0781
SENT321314 SCH_0690SCH_1956SCH_0692SCH_0693SCH_0690SCH_0692
SENT295319 SPA2078SPA0917SPA2076SPA2075SPA2078SPA2076
SENT220341 STY0707STY2160STY0709STY0710STY0707STY0709
SENT209261 T2211T0924T2209T2208T2211T2209
SELO269084 SYC1264_CSYC1265_CSYC1266_CSYC1267_CSYC1264_C
SBOY300268 SBO_3265SBO_3264SBO_0517SBO_3262SBO_0515SBO_0517
SAVE227882 SAV2484SAV2487SAV2983SAV1962SAV2484SAV2486
RSPH349102 RSPH17025_2500RSPH17025_2501RSPH17025_2502RSPH17025_2503RSPH17025_2500
RSPH349101 RSPH17029_0396RSPH17029_3585RSPH17029_3586RSPH17029_0393RSPH17029_0396
RSPH272943 RSP_1750RSP_1749RSP_1748RSP_1747RSP_1750
RSP357808 ROSERS_4002ROSERS_4003ROSERS_4004ROSERS_4005ROSERS_4002ROSERS_4004
RSP101510 RHA1_RO06949RHA1_RO01894RHA1_RO06951RHA1_RO03591RHA1_RO06770RHA1_RO06951
RSOL267608 RSC2260RSC2259RSC0482RSC0481RSC0484RSC0482
RRUB269796 RRU_A1001RRU_A1002RRU_A1003RRU_A1004RRU_A2090RRU_A2088
RPOM246200 SPO_0522SPO_2366SPO_2365SPO_0519SPO_2661SPO_2659
RPAL316058 RPB_2909RPB_2910RPB_2911RPB_2912RPB_2909RPB_2911
RPAL316057 RPD_2561RPD_2560RPD_2559RPD_2558RPD_2561RPD_2559
RPAL316056 RPC_2552RPC_2551RPC_2550RPC_2549RPC_2552RPC_2550
RPAL316055 RPE_2732RPE_2731RPE_2730RPE_2729RPE_2732RPE_2730
RPAL258594 RPA2563RPA2630RPA2561RPA2560RPA2563RPA2561
RMET266264 RMET_0693RMET_0692RMET_0692RMET_1123RMET_0402RMET_0400
RLEG216596 RL2201RL2202RL2203RL2204RL4486RL2203
RFER338969 RFER_2327RFER_2326RFER_2325RFER_2324RFER_2327RFER_2325
REUT381666 H16_A0475H16_B1809H16_A0473H16_B1634H16_A0475H16_A0473
RETL347834 RHE_CH01895RHE_CH01896RHE_CH01897RHE_CH01898RHE_CH01895RHE_CH01897
RCAS383372 RCAS_1457RCAS_1456RCAS_1455RCAS_1454RCAS_1457RCAS_1455
PSYR223283 PSPTO_1258PSPTO_1257PSPTO_1256PSPTO_1255PSPTO_4174PSPTO_4172
PSYR205918 PSYR_1075PSYR_1074PSYR_1073PSYR_1072PSYR_3911PSYR_3909
PSP312153 PNUC_0987PNUC_0988PNUC_0989PNUC_0990PNUC_0987PNUC_0989
PSP296591 BPRO_0403BPRO_3902BPRO_3974BPRO_3904BPRO_3901BPRO_3903
PPUT76869 PPUTGB1_4549PPUTGB1_4550PPUTGB1_4551PPUTGB1_4552PPUTGB1_4344PPUTGB1_4342
PPUT351746 PPUT_4425PPUT_4426PPUT_4427PPUT_4428PPUT_1109PPUT_1111
PPUT160488 PP_1300PP_1299PP_1298PP_1297PP_1068PP_1070
PPRO298386 PBPRA2188PBPRA2187PBPRA2186PBPRA2185PBPRA2188PBPRA1476
PNAP365044 PNAP_1488PNAP_3456PNAP_2074PNAP_3458PNAP_3455PNAP_3457
PMEN399739 PMEN_3557PMEN_3558PMEN_3559PMEN_3560PMEN_3557
PLUM243265 PLU1304PLU1306PLU1307PLU1304PLU1306
PING357804 PING_2825PING_2820PING_2823PING_2822PING_2821PING_2823
PFLU220664 PFL_1051PFL_1050PFL_1049PFL_1048PFL_4874PFL_4872
PFLU216595 PFLU1003PFLU1002PFLU1001PFLU5128PFLU1136PFLU1138
PFLU205922 PFL_0976PFL_0975PFL_0974PFL_0973PFL_4538PFL_4536
PENT384676 PSEEN4522PSEEN4523PSEEN4524PSEEN4525PSEEN1190PSEEN1192
PCRY335284 PCRYO_0337PCRYO_0336PCRYO_0334PCRYO_0337PCRYO_0335
PARC259536 PSYC_0306PSYC_0305PSYC_0304PSYC_0303PSYC_0306PSYC_0304
PAER208964 PA1339PA4193PA1341PA3858PA1339PA1341
PAER208963 PA14_46950PA14_46930PA14_46920PA14_14100PA14_46950PA14_46920
OCAR504832 OCAR_6059OCAR_6058OCAR_6057OCAR_6056OCAR_6059OCAR_6057
OANT439375 OANT_2554OANT_2555OANT_2556OANT_1406OANT_2554OANT_2556
NWIN323098 NWI_1526NWI_1527NWI_1528NWI_1529NWI_1526NWI_1528
NSP103690 ALR4167ALR4166ALR4165ALR4164ALR4167ALR4165
NHAM323097 NHAM_2068NHAM_2069NHAM_2070NHAM_2071NHAM_2068
MSP409 M446_5873M446_5872M446_5871M446_5870M446_4546M446_4544
MSP400668 MMWYL1_4396MMWYL1_4395MMWYL1_4394MMWYL1_4393MMWYL1_4396MMWYL1_4394
MSP266779 MESO_1116MESO_4428MESO_1114MESO_1113MESO_4373MESO_4371
MSME246196 MSMEG_2728MSMEG_5318MSMEG_2726MSMEG_0787MSMEG_2728
MPET420662 MPE_A0446MPE_A0445MPE_A0444MPE_A0443MPE_A0446MPE_A0444
MLOT266835 MLR8154MLR8153MLR8151MLR8149MLR8154MLR2204
MEXT419610 MEXT_3964MEXT_3963MEXT_3961MEXT_3964MEXT_3962
LREU557436 LREU_0099LREU_0515LREU_1513LREU_1511LREU_1513
LJOH257314 LJ_0753LJ_0786LJ_0755LJ_1307LJ_0753LJ_0755
LGAS324831 LGAS_0528LGAS_0544LGAS_0530LGAS_0528LGAS_0530
LCHO395495 LCHO_2139LCHO_2138LCHO_2137LCHO_2136LCHO_4021LCHO_4023
KPNE272620 GKPORF_B5102GKPORF_B1581GKPORF_B5104GKPORF_B5105GKPORF_B5102GKPORF_B5104
JSP290400 JANN_0630JANN_0629JANN_0628JANN_0627JANN_0630JANN_3958
HMOD498761 HM1_0169HM1_0174HM1_0174HM1_0170HM1_0169HM1_0173
HCHE349521 HCH_05810HCH_05809HCH_05808HCH_05807HCH_05810
HARS204773 HEAR0228HEAR0227HEAR0225HEAR0228HEAR0226
GKAU235909 GK1976GK3454GK3454GK1977GK1976GK1978
ESP42895 ENT638_3710ENT638_3709ENT638_3708ENT638_3707ENT638_1179ENT638_1181
EFER585054 EFER_3250EFER_3249EFER_3248EFER_3247EFER_2451EFER_2449
ECOO157 YHDZYHDYYHDXYHDWGLTLGLTJ
ECOL83334 ECS4144ECS4143ECS4142ECS4141ECS0691ECS0693
ECOL585397 ECED1_3933ECED1_3932ECED1_3931ECED1_3930ECED1_0642ECED1_0644
ECOL585057 ECIAI39_3772ECIAI39_3771ECIAI39_3770ECIAI39_3769ECIAI39_0620ECIAI39_0622
ECOL585056 ECUMN_3746ECUMN_3745ECUMN_3744ECUMN_3743ECUMN_0746ECUMN_0748
ECOL585055 EC55989_3686EC55989_3685EC55989_3684EC55989_3683EC55989_0646EC55989_0648
ECOL585035 ECS88_3657ECS88_3656ECS88_3655ECS88_3654ECS88_0687ECS88_0689
ECOL585034 ECIAI1_3415ECIAI1_3414ECIAI1_3413ECIAI1_3412ECIAI1_0636ECIAI1_0638
ECOL481805 ECOLC_0435ECOLC_0436ECOLC_0437ECOLC_0438ECOLC_2993ECOLC_2991
ECOL469008 ECBD_0473ECBD_0474ECBD_0475ECBD_0476ECBD_0473ECBD_2997
ECOL439855 ECSMS35_3566ECSMS35_3565ECSMS35_3564ECSMS35_3563ECSMS35_0673ECSMS35_0675
ECOL413997 ECB_03129ECB_03128ECB_03127ECB_03126ECB_03129ECB_00622
ECOL409438 ECSE_3553ECSE_3552ECSE_3551ECSE_3550ECSE_0722ECSE_0724
ECOL405955 APECO1_3169APECO1_3170APECO1_3171APECO1_3172APECO1_1411APECO1_1409
ECOL364106 UTI89_C3713UTI89_C3712UTI89_C3711UTI89_C3710UTI89_C0648UTI89_C0650
ECOL362663 ECP_3366ECP_3365ECP_3364ECP_3363ECP_0675ECP_0677
ECOL331111 ECE24377A_3757ECE24377A_3756ECE24377A_3755ECE24377A_3754ECE24377A_0680ECE24377A_0682
ECOL316407 ECK3258:JW3239:B3271ECK3257:JW5545:B3270ECK3256:JW5544:B3269ECK3255:JW3236:B3268ECK0645:JW0647:B0652ECK0647:JW0649:B0654
ECOL199310 C4037C4036C4035C4034C0736C0738
ECAR218491 ECA0242ECA0243ECA0244ECA0245ECA1311ECA1313
DVUL882 DVU_0753DVU_0751DVU_0674DVU_2342DVU_2343DVU_2341
DSHI398580 DSHI_0321DSHI_0320DSHI_0319DSHI_0318DSHI_0321
DRAD243230 DR_1648DR_0565DR_2155DR_1648DR_2155
DPSY177439 DP1437DP1436DP1435DP1434DP1235DP0088
DHAF138119 DSY4278DSY4276DSY4275DSY4687DSY4874
DGEO319795 DGEO_1064DGEO_1987DGEO_1061DGEO_1064DGEO_1061
DDES207559 DDE_1428DDE_2765DDE_1386DDE_1429DDE_1428DDE_1430
CVIO243365 CV_0117CV_0118CV_0119CV_0120CV_0117CV_0119
CSP501479 CSE45_0430CSE45_0431CSE45_0432CSE45_0433CSE45_5103
CSAL290398 CSAL_0123CSAL_0122CSAL_0121CSAL_0120CSAL_0123CSAL_0121
CPEL335992 SAR11_0957SAR11_0955SAR11_0954SAR11_0953SAR11_0957
CBEI290402 CBEI_4173CBEI_4170CBEI_4172CBEI_2394CBEI_4171
BWEI315730 BCERKBAB4_0552BCERKBAB4_0760BCERKBAB4_0554BCERKBAB4_0553BCERKBAB4_0552BCERKBAB4_0554
BVIE269482 BCEP1808_0638BCEP1808_0637BCEP1808_0636BCEP1808_0635BCEP1808_0638BCEP1808_0636
BTRI382640 BT_0924BT_1527BT_1525BT_1528BT_1526
BTHU412694 BALH_0580BALH_0775BALH_0357BALH_0581BALH_0580BALH_0582
BTHU281309 BT9727_0551BT9727_0761BT9727_0335BT9727_0552BT9727_0551BT9727_0553
BTHA271848 BTH_I1547BTH_I1227BTH_I2449BTH_I1225BTH_I1228BTH_I1226
BSUI470137 BSUIS_A0780BSUIS_A0779BSUIS_A0778BSUIS_B0940BSUIS_A0780
BSUI204722 BR_0745BR_0744BR_0743BR_A0948BR_0745
BSUB BSU27430BSU03370BSU23970BSU27440BSU27430BSU27450
BSP376 BRADO3910BRADO3911BRADO3912BRADO3913BRADO6145BRADO6147
BSP36773 BCEP18194_B0834BCEP18194_A3757BCEP18194_A3756BCEP18194_A5483BCEP18194_A3758BCEP18194_A3756
BQUI283165 BQ06890BQ08320BQ08300BQ08330BQ08310
BPUM315750 BPUM_2382BPUM_0304BPUM_2384BPUM_2383BPUM_3490BPUM_2384
BPSE320373 BURPS668_3393BURPS668_3394BURPS668_1885BURPS668_3396BURPS668_3393BURPS668_3395
BPSE320372 BURPS1710B_A3708BURPS1710B_A3709BURPS1710B_A2209BURPS1710B_A3711BURPS1710B_A3708BURPS1710B_A3710
BPSE272560 BPSL2921BPSL2922BPSL1808BPSL2924BPSL2921BPSL2923
BPET94624 BPET0505BPET0504BPET0503BPET0502BPET0505BPET4445
BPER257313 BP3828BP3829BP3830BP3831BP0768BP0056
BPAR257311 BPP3972BPP3973BPP3974BPP3975BPP4078BPP0327
BOVI236 GBOORF0771GBOORF0770GBOORF0769GBOORFA0978GBOORF0771
BMEL224914 BMEI1208BMEI1209BMEI1210BMEII0349BMEI1208
BMAL320389 BMA10247_2619BMA10247_2620BMA10247_0838BMA10247_2622BMA10247_2619BMA10247_2621
BMAL320388 BMASAVP1_A0347BMASAVP1_A0348BMASAVP1_A1667BMASAVP1_A0350BMASAVP1_A0347BMASAVP1_A0349
BMAL243160 BMA_2434BMA_2435BMA_2437BMA_2434BMA_2436
BJAP224911 BLR4449BLR4448BLR4447BLR4446BLL7597BLL7599
BHEN283166 BH06340BH10600BH10580BH10610BH10590
BCLA66692 ABC0770ABC2931ABC0772ABC0771ABC0770ABC0772
BCER572264 BCA_0677BCA_0913BCA_0443BCA_0678BCA_0677BCA_0679
BCER405917 BCE_0707BCE_A0209BCE_0467BCE_0609BCE_0707BCE_0709
BCER315749 BCER98_0540BCER98_0688BCER98_0542BCER98_0541BCER98_0540BCER98_0542
BCER288681 BCE33L0550BCE33L0754BCE33L0338BCE33L0461BCE33L0550BCE33L0552
BCEN331272 BCEN2424_0672BCEN2424_0671BCEN2424_0670BCEN2424_2173BCEN2424_0672BCEN2424_0670
BCEN331271 BCEN_0189BCEN_0188BCEN_0187BCEN_5904BCEN_0189BCEN_0187
BCAN483179 BCAN_A0760BCAN_A0759BCAN_A0758BCAN_B0969BCAN_A0760
BBRO257310 BB4445BB4446BB4447BB4448BB4549BB0330
BBAC360095 BARBAKC583_0595BARBAKC583_0689BARBAKC583_0691BARBAKC583_0688BARBAKC583_0690
BAMY326423 RBAM_024530RBAM_024560RBAM_024550RBAM_024540RBAM_024530RBAM_024550
BAMB398577 BAMMC406_4774BAMMC406_0592BAMMC406_0591BAMMC406_2089BAMMC406_0593BAMMC406_0591
BAMB339670 BAMB_4250BAMB_0566BAMB_0565BAMB_2212BAMB_0567BAMB_0565
AVAR240292 AVA_0737AVA_0738AVA_0739AVA_0740AVA_0737AVA_0739
ASP62977 ACIAD2056ACIAD3591ACIAD2061ACIAD2056ACIAD2059
ASP62928 AZO0439AZO1329AZO1330AZO1331AZO0439AZO0441
ASP232721 AJS_0612AJS_0611AJS_0609AJS_0612AJS_0610
ASP1667 ARTH_2801ARTH_3135ARTH_3135ARTH_2801ARTH_2803
AMAR329726 AM1_1016AM1_1015AM1_1014AM1_5624AM1_1016AM1_1014
ACAU438753 AZC_1588AZC_1587AZC_1586AZC_1585AZC_1924AZC_1926
ABAU360910 BAV3055BAV3056BAV3057BAV3058BAV3055
AAVE397945 AAVE_0299AAVE_0209AAVE_4222AAVE_4070AAVE_4072
AAUR290340 AAUR_2785AAUR_3105AAUR_2744AAUR_2785AAUR_2787


Organism features enriched in list (features available for 172 out of the 184 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Bubonic_plague 0.000619666
Disease:Dysentery 0.009148756
Disease:Gastroenteritis 0.00043561013
Endospores:No 2.281e-932211
GC_Content_Range4:0-40 3.056e-2017213
GC_Content_Range4:40-60 0.002630480224
GC_Content_Range4:60-100 3.388e-1175145
GC_Content_Range7:0-30 7.592e-6247
GC_Content_Range7:30-40 2.047e-1315166
GC_Content_Range7:50-60 0.000079848107
GC_Content_Range7:60-70 4.899e-1374134
Genome_Size_Range5:0-2 8.889e-197155
Genome_Size_Range5:2-4 9.023e-1126197
Genome_Size_Range5:4-6 1.500e-21104184
Genome_Size_Range5:6-10 3.049e-113547
Genome_Size_Range9:1-2 6.862e-147128
Genome_Size_Range9:2-3 1.672e-136120
Genome_Size_Range9:4-5 1.723e-85296
Genome_Size_Range9:5-6 2.162e-105288
Genome_Size_Range9:6-8 8.107e-113038
Gram_Stain:Gram_Neg 8.164e-13136333
Gram_Stain:Gram_Pos 2.605e-721150
Habitat:Host-associated 0.000222943206
Habitat:Multiple 0.000012974178
Habitat:Terrestrial 0.00153471731
Motility:No 5.840e-820151
Motility:Yes 1.842e-8109267
Optimal_temp.:25-30 0.00034801319
Optimal_temp.:25-35 0.0054494914
Oxygen_Req:Anaerobic 6.648e-98102
Oxygen_Req:Facultative 0.000036080201
Shape:Coccus 2.308e-8582
Shape:Rod 9.900e-16144347
Shape:Spiral 0.0000698134
Temp._range:Mesophilic 0.0045370150473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 295
Effective number of orgs (counting one per cluster within 468 clusters): 232

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79010
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPEN368408 ncbi Thermofilum pendens Hrk 51
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TLET416591 ncbi Thermotoga lettingae TMO1
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSP94122 ncbi Shewanella sp. ANA-30
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSOL273057 ncbi Sulfolobus solfataricus P20
SSED425104 ncbi Shewanella sediminis HAW-EB30
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPEA398579 ncbi Shewanella pealeana ATCC 7003450
SONE211586 ncbi Shewanella oneidensis MR-10
SMAR399550 ncbi Staphylothermus marinus F11
SLOI323850 ncbi Shewanella loihica PV-40
SHAL458817 ncbi Shewanella halifaxensis HAW-EB40
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SGOR29390 Streptococcus gordonii Challis1
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122281
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SDEN318161 ncbi Shewanella denitrificans OS2170
SDEG203122 ncbi Saccharophagus degradans 2-400
SBAL402882 ncbi Shewanella baltica OS1850
SBAL399599 ncbi Shewanella baltica OS1950
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSTU379731 ncbi Pseudomonas stutzeri A15011
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PMUL272843 ncbi Pasteurella multocida multocida Pm700
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41841
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP35761 Nocardioides sp.1
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16220
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E1
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S21
MMAG342108 ncbi Magnetospirillum magneticum AMB-11
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT81
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HINF71421 ncbi Haemophilus influenzae Rd KW200
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HHAL349124 ncbi Halorhodospira halophila SL10
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba1
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GURA351605 ncbi Geobacter uraniireducens Rf40
GOXY290633 ncbi Gluconobacter oxydans 621H0
GMET269799 ncbi Geobacter metallireducens GS-150
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP106370 ncbi Frankia sp. CcI31
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DRED349161 ncbi Desulfotomaculum reducens MI-11
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DARO159087 ncbi Dechloromonas aromatica RCB0
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CPER289380 ncbi Clostridium perfringens SM1011
CNOV386415 ncbi Clostridium novyi NT1
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJAP155077 Cellvibrio japonicus0
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC1
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CBOT441771 ncbi Clostridium botulinum A str. Hall1
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB150
CABO218497 ncbi Chlamydophila abortus S26/31
BTUR314724 ncbi Borrelia turicatae 91E1350
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BHER314723 ncbi Borrelia hermsii DAH0
BHAL272558 ncbi Bacillus halodurans C-1250
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL031
APLE416269 ncbi Actinobacillus pleuropneumoniae L201
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACRY349163 ncbi Acidiphilium cryptum JF-50
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3450
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  EG12837   EG12836   EG12835   EG12834   EG12663   EG12661   
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TVOL273116
TTUR377629
TROS309801
TPEN368408 TPEN_0905
TPAL243276
TLET416591 TLET_0021
TKOD69014
TELO197221
TDEN326298
TDEN292415
TDEN243275
TCRU317025
TACI273075
STOK273063
SSUI391295 SSU05_1362
SSP94122
SSP387093
SSOL273057
SSED425104
SRUB309807
SPEA398579
SONE211586
SMAR399550 SMAR_1543
SLOI323850
SHAL458817
SHAE279808 SH1104
SGOR29390 SGO_0982
SEPI176280 SE_1541
SEPI176279 SERP1395
SDEN318161
SDEG203122
SBAL402882
SBAL399599
SAUR93062 SACOL1916
SAUR93061 SAOUHSC_01991
SAUR426430 NWMN_1750
SAUR418127 SAHV_1843
SAUR367830 SAUSA300_1808
SAUR359787 SAURJH1_1946
SAUR359786 SAURJH9_1912
SAUR282459 SAS1781
SAUR282458 SAR1949
SAUR273036 SAB1792C
SAUR196620 MW1799
SAUR158879 SA1675
SAUR158878 SAV1858
SAGA208435 SAG_0717
SAGA205921 SAK_0843
SACI56780
SACI330779
RTYP257363
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PTHE370438
PSTU379731 PST_1179
PSP117
PRUM264731
PMUL272843
PMOB403833
PMAR93060
PMAR167546
PMAR167540
PMAR146891
PLUT319225
PISL384616 PISL_1820
PINT246198
PHOR70601
PHAL326442
PGIN242619
PFUR186497
PDIS435591
PCAR338963
PATL342610
PAST100379
PARS340102
PAER178306
PACN267747
PABY272844
OTSU357244
NSP387092
NSP35761 NOCA_3011
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NEUT335283
NEUR228410
NARO279238
MXAN246197
MTUB419947
MTUB336982
MTHE349307
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSUC221988 MS1684
MSTA339860 MSP_0959
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM1941
MMAR444158 MMARC6_0726
MMAR426368
MMAR402880 MMARC5_1473
MMAR394221
MMAR368407
MMAR267377 MMP0229
MMAG342108 AMB3782
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MFLA265072
MCAP340047
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAQU351348 MAQU_3047
MAEO419665
MACE188937
LXYL281090
LSAK314315
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LLAC272623 L165
LLAC272622 LACR_1923
LINT267671
LINT189518
LBOR355277
LBOR355276
LBIF456481
LBIF355278
ILOI283942
IHOS453591
HWAL362976
HSP64091
HSOM228400
HSOM205914
HSAL478009
HPYL85963 JHP1099
HPYL357544 HPAG1_1111
HPY HP1172
HNEP81032
HMUK485914
HMAR272569
HINF71421
HINF374930
HINF281310
HHAL349124
HDUC233412
HBUT415426
HACI382638 HAC_0405
GVIO251221
GURA351605
GOXY290633
GMET269799
GFOR411154
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP106370 FRANCCI3_3519
FRANT
FPHI484022
FMAG334413
FJOH376686
ERUM302409
ERUM254945
ELIT314225
ECHA205920
ECAN269484
DRED349161 DRED_0728
DOLE96561
DNOD246195
DARO159087
CVES412965
CTRA471473
CTRA471472
CTET212717
CTEP194439
CSUL444179
CSP78
CRUT413404
CPSY167879
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809 CPHY_2669
CPER289380 CPR_2062
CNOV386415 NT01CX_0137
CMUR243161
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJAP155077
CHUT269798
CHOM360107 CHAB381_0438
CFEL264202
CDIP257309
CCUR360105 CCV52592_0290
CCON360104 CCC13826_0664
CCHL340177
CCAV227941 CCA_00544
CBUR434922
CBUR360115
CBUR227377
CBOT508765 CLL_A3279
CBOT441771 CLC_1223
CBLO291272
CBLO203907
CAULO
CABO218497 CAB530
BTUR314724
BTHE226186
BSP107806
BHER314723
BHAL272558
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BBUR224326
BBAC264462
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AURANTIMONAS
APLE434271 APJL_1726
APLE416269 APL_1694
APHA212042
APER272557
AMAR234826
ALAI441768
AFER243159
AEHR187272
ADEH290397
ACRY349163
ACEL351607
ABUT367737
ABOR393595
ABAC204669
AAEO224324


Organism features enriched in list (features available for 276 out of the 295 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 6.695e-91992
Arrangment:Clusters 0.00043431517
Arrangment:Pairs 0.003383141112
Disease:Pharyngitis 0.002390188
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00024051111
Disease:bronchitis_and_pneumonitis 0.002390188
Endospores:No 0.0000120124211
Endospores:Yes 0.00007051253
GC_Content_Range4:0-40 2.217e-7130213
GC_Content_Range4:60-100 4.282e-841145
GC_Content_Range7:0-30 0.00001583647
GC_Content_Range7:30-40 0.001339994166
GC_Content_Range7:40-50 0.007453266117
GC_Content_Range7:50-60 0.002128738107
GC_Content_Range7:60-70 5.626e-739134
Genome_Size_Range5:0-2 1.087e-11109155
Genome_Size_Range5:2-4 0.0001767113197
Genome_Size_Range5:4-6 4.162e-1151184
Genome_Size_Range5:6-10 2.493e-10347
Genome_Size_Range9:0-1 8.436e-102727
Genome_Size_Range9:1-2 7.991e-682128
Genome_Size_Range9:2-3 2.494e-679120
Genome_Size_Range9:4-5 0.00003802896
Genome_Size_Range9:5-6 6.150e-62388
Genome_Size_Range9:6-8 5.975e-9238
Gram_Stain:Gram_Pos 8.055e-746150
Habitat:Host-associated 2.185e-8129206
Habitat:Multiple 1.722e-1246178
Habitat:Specialized 0.00429383453
Habitat:Terrestrial 0.0068216831
Motility:Yes 0.0010004109267
Optimal_temp.:30-37 0.00610941418
Optimal_temp.:37 0.009313460106
Oxygen_Req:Anaerobic 0.000020367102
Oxygen_Req:Facultative 4.218e-670201
Salinity:Extreme_halophilic 0.005117877
Shape:Irregular_coccus 0.00252771417
Shape:Pleomorphic 0.002390188
Shape:Rod 1.623e-6137347
Shape:Sphere 0.00011591719
Shape:Spiral 0.00283672434
Temp._range:Hyperthermophilic 0.00165721823
Temp._range:Mesophilic 0.0010976210473



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 1
Effective number of orgs (counting one per cluster within 468 clusters): 1

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
LJOH257314 ncbi Lactobacillus johnsonii NCC 533 0.00271206466


Names of the homologs of the genes in the group in each of these orgs
  EG12837   EG12836   EG12835   EG12834   EG12663   EG12661   
LJOH257314 LJ_0753LJ_0786LJ_0755LJ_1307LJ_0753LJ_0755


Organism features enriched in list (features available for 1 out of the 1 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491160.5938
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951310.5570
GLUCARDEG-PWY (D-glucarate degradation I)1521080.5170
GALACTARDEG-PWY (D-galactarate degradation I)1511050.4960
GALACTITOLCAT-PWY (galactitol degradation)73660.4862
GALACTCAT-PWY (D-galactonate degradation)104820.4839
PWY-46 (putrescine biosynthesis III)138970.4765
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561030.4623
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135940.4623
PWY-4041 (γ-glutamyl cycle)2791470.4571
GLYCOCAT-PWY (glycogen degradation I)2461360.4560
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)2121240.4559
P344-PWY (acrylonitrile degradation)2101230.4539
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135930.4537
PWY-5918 (heme biosynthesis I)2721440.4517
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138940.4511
CATECHOL-ORTHO-CLEAVAGE-PWY (catechol degradation to β-ketoadipate)103780.4507
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112820.4483
GLUTAMINDEG-PWY (glutamine degradation I)1911150.4471
SO4ASSIM-PWY (sulfate reduction I (assimilatory))3111550.4444
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651700.4443
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251270.4435
PWY-561 (superpathway of glyoxylate cycle)1621030.4424
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861470.4415
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491350.4415
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491350.4415
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001510.4394
TYRFUMCAT-PWY (tyrosine degradation I)1841110.4370
PWY-6196 (serine racemization)102760.4362
GLYOXYLATE-BYPASS (glyoxylate cycle)1691050.4359
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291590.4358
IDNCAT-PWY (L-idonate degradation)2461330.4344
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761070.4300
PWY-5028 (histidine degradation II)130880.4295
PWY-5340 (sulfate activation for sulfonation)3851730.4294
4-HYDROXYMANDELATE-DEGRADATION-PWY (4-hydroxymandelate degradation)102750.4267
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001490.4253
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4221810.4242
CRNFORCAT-PWY (creatinine degradation I)1911120.4242
PWY-5148 (acyl-CoA hydrolysis)2271250.4237
PWY-6185 (4-methylcatechol degradation (ortho cleavage))107770.4235
PWY-5913 (TCA cycle variation IV)3011490.4232
PWY0-823 (arginine degradation III (arginine decarboxylase/agmatinase pathway))2451310.4224
PWY-4221 (pantothenate and coenzymeA biosynthesis II)112790.4208
ACETATEUTIL-PWY (superpathway of acetate utilization and formation)2371280.4204
PWY-3941 (β-alanine biosynthesis II)117810.4184
GLUCONSUPER-PWY (D-gluconate degradation)2291240.4113
P601-PWY (D-camphor degradation)95700.4105
PWY0-981 (taurine degradation IV)106750.4091
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831070.4091
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911100.4089
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391580.4089
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981730.4062
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96700.4059
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551320.4056
PWY-3162 (tryptophan degradation V (side chain pathway))94690.4054
PWY0-862 (cis-dodecenoyl biosynthesis)3431580.4010



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG12836   EG12835   EG12834   EG12663   EG12661   
EG128370.9998470.9998660.9997890.9998960.999699
EG128360.9998330.9997660.9996510.999476
EG128350.9998060.9997320.999682
EG128340.999610.999661
EG126630.999845
EG12661



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PAIRWISE BLAST SCORES:

  EG12837   EG12836   EG12835   EG12834   EG12663   EG12661   
EG128370.0f0---1.4e-74-
EG12836-0.0f0----
EG12835--0.0f0--8.6e-27
EG12834---0.0f0--
EG126631.4e-69---0.0f0-
EG12661--1.2e-26--0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ABC-52-CPLX (YhdW/YhdX/YhdY/YhdZ ABC transporter) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.667, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9998 0.9996 EG12834 (yhdW) YHDW-MONOMER (YhdW)
   *in cand* 0.9998 0.9997 EG12835 (yhdX) YHDX-MONOMER (YhdX)
   *in cand* 0.9998 0.9995 EG12836 (yhdY) YHDY-MONOMER (YhdY)
   *in cand* 0.9998 0.9997 EG12837 (yhdZ) YHDZ-MONOMER (YhdZ)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9995 EG12661 (gltJ) GLTJ-MONOMER (GltJ)
   *in cand* 0.9998 0.9996 EG12663 (gltL) GLTL-MONOMER (GltL)

- ABC-13-CPLX (GltIJKL glutamate ABC transporter) (degree of match pw to cand: 0.500, degree of match cand to pw: 0.333, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9998 0.9996 EG12663 (gltL) GLTL-MONOMER (GltL)
   *in cand* 0.9997 0.9995 EG12661 (gltJ) GLTJ-MONOMER (GltJ)
             0.9995 0.9990 EG12662 (gltK) GLTK-MONOMER (GltK)
             0.9995 0.9989 G6359 (gltI) G6359-MONOMER (GltI)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9998 0.9996 EG12834 (yhdW) YHDW-MONOMER (YhdW)
   *in cand* 0.9998 0.9997 EG12835 (yhdX) YHDX-MONOMER (YhdX)
   *in cand* 0.9998 0.9995 EG12836 (yhdY) YHDY-MONOMER (YhdY)
   *in cand* 0.9998 0.9997 EG12837 (yhdZ) YHDZ-MONOMER (YhdZ)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG12661 EG12663 (centered at EG12661)
EG12834 EG12835 EG12836 EG12837 (centered at EG12836)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG12837   EG12836   EG12835   EG12834   EG12663   EG12661   
269/623252/623249/623256/623267/623244/623
AAUR290340:2:Tyes413550-4143
AAVE397945:0:Tyes86-0394237913793
ABAU360910:0:Tyes01230-
ACAU438753:0:Tyes3210345347
AFUL224325:0:Tyes439----0
AHYD196024:0:Tyes1993-19920-1992
AMAR329726:9:Tyes210457120
AMET293826:0:Tyes--406--0
ANAE240017:0:Tyes0---0-
AORE350688:0:Tyes--02565--
APLE416269:0:Tyes---0--
APLE434271:0:Tno---0--
ASAL382245:5:Tyes--10990-886
ASP1667:3:Tyes0338338-02
ASP232721:2:Tyes32-031
ASP62928:0:Tyes091791891902
ASP62977:0:Tyes0-1393302
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BAMB398577:3:Tno-10151820
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BCER405917:0:Tyes-0----
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BSUB:0:Tyes253502183253625352537
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CBOT441772:1:Tno--813--0
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CBOT515621:2:Tyes--983-9820
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CCAV227941:1:Tyes--0---
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CPER195102:1:Tyes-0---1500
CPER195103:0:Tno-0---1740
CPER289380:3:Tyes-----0
CPHY357809:0:Tyes---0--
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CSP501479:8:Fyes0123--
CVIO243365:0:Tyes012302
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DRAD243230:3:Tyes106401563-10641563
DRED349161:0:Tyes-0----
DSHI398580:5:Tyes32103-
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DVUL882:1:Tyes78760165816591657
ECAR218491:0:Tyes012310711073
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ESP42895:1:Tyes255725562555255402
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FSP1855:0:Tyes2-012262-
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GSUL243231:0:Tyes0---01
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HARS204773:0:Tyes32-031
HAUR316274:2:Tyes01--0-
HCHE349521:0:Tyes32103-
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HPY:0:Tno---0--
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KPNE272620:2:Tyes343603438343934363438
KRAD266940:2:Fyes0-2-01885
LACI272621:0:Tyes--243802
LBRE387344:2:Tyes--01-0
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LDEL390333:0:Tyes--2120210212
LGAS324831:0:Tyes0162-02
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LINN272626:1:Tno----10
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LLAC272622:5:Tyes-----0
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LMES203120:1:Tyes--17310-1732
LMON169963:0:Tno----10
LMON265669:0:Tyes----10
LPLA220668:0:Tyes0-2--2
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LSPH444177:1:Tyes10--216-
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MAER449447:0:Tyes41859802533--
MAQU351348:2:Tyes0-----
MEXT419610:0:Tyes32-031
MGIL350054:3:Tyes0-2-02
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MMAG342108:0:Tyes---0--
MMAR267377:0:Tyes----0-
MMAR402880:1:Tyes0-----
MMAR444158:0:Tyes0-----
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MPET420662:1:Tyes321031
MSME246196:0:Tyes19304494192801930-
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MSP266779:3:Tyes3-10--
MSP400668:0:Tyes321031
MSP409:2:Tyes129612951294129320
MSTA339860:0:Tyes-0----
MSUC221988:0:Tyes---0--
MTHE264732:0:Tyes1-0--0
MVAN350058:0:Tyes3-0-3-
NFAR247156:2:Tyes0-2-0-
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NHAM323097:2:Tyes01230-
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NSP103690:6:Tyes321031
NSP35761:1:Tyes-0----
NWIN323098:0:Tyes012302
OANT439375:5:Tyes117211731174011721174
OCAR504832:0:Tyes321031
OIHE221109:0:Tyes1460--146145
PAER208963:0:Tyes266226612660026622660
PAER208964:0:Tno028812254602
PARC259536:0:Tyes321031
PCRY335284:1:Tyes32-031
PENT384676:0:Tyes314531463147314802
PFLU205922:0:Tyes321036073605
PFLU216595:1:Tyes2103969134136
PFLU220664:0:Tyes321037713769
PING357804:0:Tyes503213
PISL384616:0:Tyes-----0
PLUM243265:0:Fyes0-2302
PMAR167539:0:Tyes-012--
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PMAR167555:0:Tyes-012--
PMAR59920:0:Tno-012--
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PPEN278197:0:Tyes-7040--0
PPRO298386:2:Tyes7077067057047070
PPUT160488:0:Tno23123022922802
PPUT351746:0:Tyes333333343335333602
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PSP296591:2:Tyes034713541347334703472
PSP312153:0:Tyes012302
PSP56811:2:Tyes0-2-02
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PSYR205918:0:Tyes321028512849
PSYR223283:2:Tyes321028832881
RCAS383372:0:Tyes321031
RDEN375451:4:Tyes-210--
RETL347834:5:Tyes012302
REUT264198:2:Tyes0--4000-
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REUT381666:1:Tyes-172-0--
REUT381666:2:Tyes2-0-20
RFER338969:1:Tyes321031
RLEG216596:6:Tyes012322782
RMET266264:2:Tyes29329229272320
RPAL258594:0:Tyes3721031
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RPAL316058:0:Tyes012302
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RRUB269796:1:Tyes012310881086
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RSP101510:3:Fyes504705049169548685049
RSP357808:0:Tyes012302
RSPH272943:4:Tyes32103-
RSPH349101:1:Tno-01---
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RSPH349102:5:Tyes01230-
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SAGA205921:0:Tno---0--
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SAUR158878:1:Tno-0----
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SAUR196620:0:Tno-0----
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SAUR359786:1:Tno-0----
SAUR359787:1:Tno-0----
SAUR367830:3:Tno-0----
SAUR418127:0:Tyes-0----
SAUR426430:0:Tno-0----
SAUR93061:0:Fno-0----
SAUR93062:1:Tno-0----
SAVE227882:1:Fyes52252510310522524
SBOY300268:1:Tyes260025992259802
SCO:2:Fyes2-0-2-
SDYS300267:1:Tyes-1-0--
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SENT220341:0:Tno012982302
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SENT321314:2:Tno012902302
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SEPI176279:1:Tyes-0----
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SFLE373384:0:Tno248524840248320
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SHAE279808:0:Tyes-0----
SHIGELLA:0:Tno250825070250420
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SMAR399550:0:Tyes-----0
SMED366394:3:Tyes012302
SMEL266834:2:Tyes012315072
SMUT210007:0:Tyes--0270-271
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SPNE487214:0:Tno-62302-1
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SSP1148:0:Tyes-8838830--
SSP292414:2:Tyes321031
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SSP644076:7:Fyes32103-
SSP64471:0:Tyes-023--
SSP84588:0:Tyes-210-1
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SSUI391296:0:Tyes---0-1
STHE264199:0:Tyes--3060-1
STHE292459:0:Tyes1--0-595
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STHE322159:2:Tyes--3100-1
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SWOL335541:0:Tyes100-1-
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TFUS269800:0:Tyes2-0-2-
TLET416591:0:Tyes0-----
TMAR243274:0:Tyes01---1
TPEN368408:1:Tyes-----0
TPET390874:0:Tno10---0
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TTEN273068:0:Tyes0---0-
TTHE262724:1:Tyes0---011
TTHE300852:2:Tyes0---011
UMET351160:0:Tyes01----
VCHO:0:Tyes01230-
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VEIS391735:1:Tyes26002741704970496
VFIS312309:2:Tyes32103-
VPAR223926:1:Tyes321031538
VVUL196600:2:Tyes01230-
VVUL216895:1:Tno32103-
WSUC273121:0:Tyes0----3
XAUT78245:1:Tyes32103-
YENT393305:1:Tyes82982882782620
YPES187410:5:Tno012302
YPES214092:3:Tno01-302
YPES349746:2:Tno43-042
YPES360102:3:Tyes321031
YPES377628:2:Tno012302
YPES386656:2:Tno321031
YPSE273123:2:Tno012302
YPSE349747:2:Tno321228031



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