CANDIDATE ID: 133

CANDIDATE ID: 133

NUMBER OF GENES: 6
AVERAGE SCORE:    9.9972513e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7659 (mlaC) (b3192)
   Products of gene:
     - G7659-MONOMER (MlaC)
     - ABC-45-CPLX (phospholipid ABC transporter)

- G7657 (yrbA) (b3190)
   Products of gene:
     - G7657-MONOMER (predicted DNA-binding transcriptional regulator)

- EG12801 (mlaF) (b3195)
   Products of gene:
     - YRBF-MONOMER (MlaF)
     - ABC-45-CPLX (phospholipid ABC transporter)

- EG12800 (mlaE) (b3194)
   Products of gene:
     - YRBE-MONOMER (MlaE)
     - ABC-45-CPLX (phospholipid ABC transporter)

- EG12799 (mlaD) (b3193)
   Products of gene:
     - EG12799-MONOMER (MlaD)
     - ABC-45-CPLX (phospholipid ABC transporter)

- EG11358 (murA) (b3189)
   Products of gene:
     - UDPNACETYLGLUCOSAMENOLPYRTRANS-MONOMER (UDP-N-acetylglucosamine enolpyruvoyl transferase)
       Reactions:
        UDP-alpha-N-acetyl-D-glucosamine + phosphoenolpyruvate  =  UDP-N-acetylglucosamine-enolpyruvate + phosphate
         In pathways
         PWY-6470 (PWY-6470)
         PWY-6471 (PWY-6471)
         PWY-5265 (PWY-5265)
         PWY-6385 (PWY-6385)
         PEPTIDOGLYCANSYN-PWY (peptidoglycan biosynthesis I (meso-diaminopimelate containing))
         PWY-6386 (PWY-6386)
         PWY-6387 (UDP-N-acetylmuramoyl-pentapeptide biosynthesis III (meso-DAP-containing))



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ORGANISMS CONTAINING AT LEAST 5 GENES FROM THE GROUP:

Total number of orgs: 200
Effective number of orgs (counting one per cluster within 468 clusters): 132

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM45
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317586
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329536
YPES386656 ncbi Yersinia pestis Pestoides F6
YPES377628 ncbi Yersinia pestis Nepal5166
YPES360102 ncbi Yersinia pestis Antiqua6
YPES349746 ncbi Yersinia pestis Angola6
YPES214092 ncbi Yersinia pestis CO926
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80816
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A5
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110185
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103315
XFAS405440 ncbi Xylella fastidiosa M125
XFAS183190 ncbi Xylella fastidiosa Temecula15
XFAS160492 ncbi Xylella fastidiosa 9a5c5
XCAM487884 Xanthomonas campestris pv. paulliniae5
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-105
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80045
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339135
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3065
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106336
VFIS312309 ncbi Vibrio fischeri ES1146
VEIS391735 ncbi Verminephrobacter eiseniae EF01-26
VCHO345073 ncbi Vibrio cholerae O3956
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169616
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252596
TCRU317025 ncbi Thiomicrospira crunogena XCL-26
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT26
SSP94122 ncbi Shewanella sp. ANA-36
SSP644076 Silicibacter sp. TrichCH4B5
SSON300269 ncbi Shigella sonnei Ss0466
SSED425104 ncbi Shewanella sediminis HAW-EB36
SPRO399741 ncbi Serratia proteamaculans 5686
SPEA398579 ncbi Shewanella pealeana ATCC 7003456
SONE211586 ncbi Shewanella oneidensis MR-16
SLOI323850 ncbi Shewanella loihica PV-46
SLAC55218 Ruegeria lacuscaerulensis6
SHIGELLA ncbi Shigella flexneri 2a str. 2457T6
SHAL458817 ncbi Shewanella halifaxensis HAW-EB46
SGLO343509 ncbi Sodalis glossinidius morsitans6
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB5
SFLE373384 ncbi Shigella flexneri 5 str. 84016
SFLE198214 ncbi Shigella flexneri 2a str. 3016
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4766
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B676
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91506
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SDYS300267 ncbi Shigella dysenteriae Sd1976
SDEN318161 ncbi Shewanella denitrificans OS2176
SBOY300268 ncbi Shigella boydii Sb2276
SBAL402882 ncbi Shewanella baltica OS1856
SBAL399599 ncbi Shewanella baltica OS1956
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170255
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170295
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.15
RSOL267608 ncbi Ralstonia solanacearum GMI10006
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111705
RPOM246200 ncbi Ruegeria pomeroyi DSS-35
RMET266264 ncbi Ralstonia metallidurans CH346
RFER338969 ncbi Rhodoferax ferrireducens T1186
RFEL315456 ncbi Rickettsia felis URRWXCal25
REUT381666 ncbi Ralstonia eutropha H166
REUT264198 ncbi Ralstonia eutropha JMP1346
RCAN293613 ncbi Rickettsia canadensis McKiel5
RAKA293614 ncbi Rickettsia akari Hartford5
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30006
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a6
PSTU379731 ncbi Pseudomonas stutzeri A15015
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-16
PSP296591 ncbi Polaromonas sp. JS6666
PPUT76869 ncbi Pseudomonas putida GB-16
PPUT351746 ncbi Pseudomonas putida F16
PPUT160488 ncbi Pseudomonas putida KT24406
PPRO298386 ncbi Photobacterium profundum SS96
PNAP365044 ncbi Polaromonas naphthalenivorans CJ26
PMUL272843 ncbi Pasteurella multocida multocida Pm706
PMEN399739 ncbi Pseudomonas mendocina ymp5
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO16
PING357804 ncbi Psychromonas ingrahamii 376
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1256
PFLU220664 ncbi Pseudomonas fluorescens Pf-55
PFLU216595 ncbi Pseudomonas fluorescens SBW256
PFLU205922 ncbi Pseudomonas fluorescens Pf0-16
PENT384676 ncbi Pseudomonas entomophila L486
PCAR338963 ncbi Pelobacter carbinolicus DSM 23805
PATL342610 ncbi Pseudoalteromonas atlantica T6c6
PAER208964 ncbi Pseudomonas aeruginosa PAO16
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA146
NOCE323261 ncbi Nitrosococcus oceani ATCC 197076
NMUL323848 ncbi Nitrosospira multiformis ATCC 251966
NMEN374833 ncbi Neisseria meningitidis 0534426
NMEN272831 ncbi Neisseria meningitidis FAM186
NMEN122587 ncbi Neisseria meningitidis Z24916
NMEN122586 ncbi Neisseria meningitidis MC586
NGON242231 ncbi Neisseria gonorrhoeae FA 10906
NEUT335283 ncbi Nitrosomonas eutropha C916
NEUR228410 ncbi Nitrosomonas europaea ATCC 197186
MXAN246197 ncbi Myxococcus xanthus DK 16225
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E6
MSP400668 ncbi Marinomonas sp. MWYL15
MPET420662 ncbi Methylibium petroleiphilum PM16
MMAG342108 ncbi Magnetospirillum magneticum AMB-16
MFLA265072 ncbi Methylobacillus flagellatus KT6
MCAP243233 ncbi Methylococcus capsulatus Bath6
MAQU351348 ncbi Marinobacter aquaeolei VT86
LPNE400673 ncbi Legionella pneumophila Corby6
LPNE297246 ncbi Legionella pneumophila Paris6
LPNE297245 ncbi Legionella pneumophila Lens6
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 16
LCHO395495 ncbi Leptothrix cholodnii SP-66
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785786
JSP375286 ncbi Janthinobacterium sp. Marseille6
ILOI283942 ncbi Idiomarina loihiensis L2TR6
HSOM228400 ncbi Haemophilus somnus 23366
HSOM205914 ncbi Haemophilus somnus 129PT6
HINF71421 ncbi Haemophilus influenzae Rd KW206
HINF374930 ncbi Haemophilus influenzae PittEE6
HINF281310 ncbi Haemophilus influenzae 86-028NP6
HHAL349124 ncbi Halorhodospira halophila SL16
HDUC233412 ncbi Haemophilus ducreyi 35000HP6
HCHE349521 ncbi Hahella chejuensis KCTC 23965
HARS204773 ncbi Herminiimonas arsenicoxydans6
GURA351605 ncbi Geobacter uraniireducens Rf45
GOXY290633 ncbi Gluconobacter oxydans 621H5
GMET269799 ncbi Geobacter metallireducens GS-155
GBET391165 ncbi Granulibacter bethesdensis CGDNIH15
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-005
FTUL418136 ncbi Francisella tularensis tularensis WY96-34185
FTUL401614 ncbi Francisella novicida U1125
FTUL393115 ncbi Francisella tularensis tularensis FSC1985
FTUL393011 ncbi Francisella tularensis holarctica OSU185
FTUL351581 Francisella tularensis holarctica FSC2005
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250175
ESP42895 Enterobacter sp.6
EFER585054 ncbi Escherichia fergusonii ATCC 354696
ECOO157 ncbi Escherichia coli O157:H7 EDL9336
ECOL83334 Escherichia coli O157:H76
ECOL585397 ncbi Escherichia coli ED1a6
ECOL585057 ncbi Escherichia coli IAI396
ECOL585056 ncbi Escherichia coli UMN0266
ECOL585055 ncbi Escherichia coli 559896
ECOL585035 ncbi Escherichia coli S886
ECOL585034 ncbi Escherichia coli IAI16
ECOL481805 ncbi Escherichia coli ATCC 87396
ECOL469008 ncbi Escherichia coli BL21(DE3)6
ECOL439855 ncbi Escherichia coli SMS-3-56
ECOL413997 ncbi Escherichia coli B str. REL6066
ECOL409438 ncbi Escherichia coli SE116
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI896
ECOL362663 ncbi Escherichia coli 5366
ECOL331111 ncbi Escherichia coli E24377A6
ECOL316407 ncbi Escherichia coli K-12 substr. W31106
ECOL199310 ncbi Escherichia coli CFT0736
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10436
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough5
DSHI398580 ncbi Dinoroseobacter shibae DFL 125
DNOD246195 ncbi Dichelobacter nodosus VCS1703A5
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G205
DARO159087 ncbi Dechloromonas aromatica RCB6
CVIO243365 ncbi Chromobacterium violaceum ATCC 124726
CSP78 Caulobacter sp.5
CSP501479 Citreicella sp. SE455
CSAL290398 ncbi Chromohalobacter salexigens DSM 30436
CPSY167879 ncbi Colwellia psychrerythraea 34H6
BVIE269482 ncbi Burkholderia vietnamiensis G46
BTHA271848 ncbi Burkholderia thailandensis E2646
BSP36773 Burkholderia sp.6
BPSE320373 ncbi Burkholderia pseudomallei 6686
BPSE320372 ncbi Burkholderia pseudomallei 1710b6
BPSE272560 ncbi Burkholderia pseudomallei K962436
BPET94624 Bordetella petrii6
BPER257313 ncbi Bordetella pertussis Tohama I6
BPAR257311 ncbi Bordetella parapertussis 128226
BMAL320389 ncbi Burkholderia mallei NCTC 102476
BMAL320388 ncbi Burkholderia mallei SAVP16
BMAL243160 ncbi Burkholderia mallei ATCC 233446
BCEN331272 ncbi Burkholderia cenocepacia HI24246
BCEN331271 ncbi Burkholderia cenocepacia AU 10546
BBRO257310 ncbi Bordetella bronchiseptica RB506
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1005
BAMB398577 ncbi Burkholderia ambifaria MC40-66
BAMB339670 ncbi Burkholderia ambifaria AMMD6
ASP76114 ncbi Aromatoleum aromaticum EbN16
ASP62977 ncbi Acinetobacter sp. ADP16
ASP62928 ncbi Azoarcus sp. BH726
ASP232721 ncbi Acidovorax sp. JS426
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4496
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL036
APLE416269 ncbi Actinobacillus pleuropneumoniae L206
AHYD196024 Aeromonas hydrophila dhakensis6
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232706
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-16
ACRY349163 ncbi Acidiphilium cryptum JF-55
ABAU360910 ncbi Bordetella avium 197N6
AAVE397945 ncbi Acidovorax citrulli AAC00-16


Names of the homologs of the genes in the group in each of these orgs
  G7659   G7657   EG12801   EG12800   EG12799   EG11358   
ZMOB264203 ZMO1612ZMO1590ZMO1591ZMO0926ZMO1724
YPSE349747 YPSIP31758_0451YPSIP31758_0453YPSIP31758_0448YPSIP31758_0449YPSIP31758_0450YPSIP31758_0454
YPSE273123 YPTB3516YPTB3514YPTB3519YPTB3518YPTB3517YPTB3513
YPES386656 YPDSF_0325YPDSF_0327YPDSF_0322YPDSF_0323YPDSF_0324YPDSF_0328
YPES377628 YPN_3454YPN_3452YPN_3457YPN_3456YPN_3455YPN_3451
YPES360102 YPA_3731YPA_3733YPA_3728YPA_3729YPA_3730YPA_3734
YPES349746 YPANGOLA_A1143YPANGOLA_A1141YPANGOLA_A1146YPANGOLA_A1145YPANGOLA_A1144YPANGOLA_A1140
YPES214092 YPO3572YPO3570YPO3575YPO3574YPO3573YPO3569
YPES187410 Y0143Y0141Y0146Y0145Y0144Y0140
YENT393305 YE3749YE3747YE3752YE3751YE3750YE3746
XORY360094 XOOORF_5081XOOORF_5078XOOORF_5079XOOORF_5080XOOORF_4027
XORY342109 XOO0278XOO0281XOO0280XOO0279XOO1190
XORY291331 XOO0307XOO0310XOO0309XOO0308XOO1290
XFAS405440 XFASM12_1819XFASM12_1816XFASM12_1817XFASM12_1818XFASM12_0763
XFAS183190 PD_1657PD_1654PD_1655PD_1656PD_0644
XFAS160492 XF0418XF0421XF0420XF0419XF1415
XCAM487884 XCC-B100_4430XCC-B100_4427XCC-B100_4428XCC-B100_4429XCC-B100_1365
XCAM316273 XCAORF_4554XCAORF_4551XCAORF_4552XCAORF_4553XCAORF_3166
XCAM314565 XC_4299XC_4296XC_4297XC_4298XC_1318
XCAM190485 XCC4210XCC4207XCC4208XCC4209XCC2795
XAXO190486 XAC4342XAC4339XAC4340XAC4341XAC2965
VVUL216895 VV1_0682VV1_0680VV1_0685VV1_0684VV1_0683VV1_0679
VVUL196600 VV0458VV0460VV0455VV0456VV0457VV0461
VPAR223926 VP2661VP2659VP2664VP2663VP2662VP2658
VFIS312309 VF0397VF0400VF0394VF0395VF0396VF0401
VEIS391735 VEIS_2401VEIS_4454VEIS_2397VEIS_2398VEIS_2399VEIS_4453
VCHO345073 VC0395_A2099VC0395_A2097VC0395_A2102VC0395_A2101VC0395_A2100VC0395_A2096
VCHO VC2517VC2515VC2520VC2519VC2518VC2514
TDEN292415 TBD_1896TBD_1892TBD_1900TBD_1899TBD_1898TBD_1891
TCRU317025 TCR_0982TCR_0548TCR_0979TCR_0980TCR_0981TCR_0987
STYP99287 STM3310STM3308STM3313STM3312STM3311STM3307
SSP94122 SHEWANA3_0681SHEWANA3_0683SHEWANA3_0678SHEWANA3_0679SHEWANA3_0680SHEWANA3_0684
SSP644076 SCH4B_2647SCH4B_1992SCH4B_1993SCH4B_2116SCH4B_0642
SSON300269 SSO_3340SSO_3338SSO_3343SSO_3342SSO_3341SSO_3337
SSED425104 SSED_0736SSED_0738SSED_0733SSED_0734SSED_0735SSED_0739
SPRO399741 SPRO_4357SPRO_4355SPRO_4360SPRO_4359SPRO_4358SPRO_4354
SPEA398579 SPEA_3606SPEA_3604SPEA_3609SPEA_3608SPEA_3607SPEA_3603
SONE211586 SO_3951SO_3949SO_3954SO_3953SO_3952SO_3948
SLOI323850 SHEW_3301SHEW_3299SHEW_3304SHEW_3303SHEW_3302SHEW_3298
SLAC55218 SL1157_1272SL1157_3011SL1157_2673SL1157_2674SL1157_2120SL1157_0402
SHIGELLA YRBCYRBAVPSAVPSBVPSCMURA
SHAL458817 SHAL_3695SHAL_3693SHAL_3698SHAL_3697SHAL_3696SHAL_3692
SGLO343509 SG0208SG0210SG0205SG0206SG0207SG0211
SFUM335543 SFUM_3284SFUM_0401SFUM_0402SFUM_0403SFUM_1715
SFLE373384 SFV_3222SFV_3220SFV_3225SFV_3224SFV_3223SFV_3219
SFLE198214 AAN44698.1AAN44696.1AAN44701.1AAN44700.1AAN44699.1AAN44695.1
SENT454169 SEHA_C3607SEHA_C3605SEHA_C3610SEHA_C3609SEHA_C3608SEHA_C3604
SENT321314 SCH_3248SCH_3246SCH_3251SCH_3250SCH_3249SCH_3245
SENT295319 SPA3177SPA3175SPA3180SPA3179SPA3178SPA3174
SENT220341 STY3489STY3487STY3492STY3491STY3490STY3486
SENT209261 T3227T3225T3230T3229T3228T3224
SDYS300267 SDY_3373SDY_3371SDY_3376SDY_3375SDY_3374SDY_3370
SDEN318161 SDEN_0499SDEN_0501SDEN_0496SDEN_0497SDEN_0498SDEN_0502
SBOY300268 SBO_3190SBO_3192SBO_3187SBO_3188SBO_3189SBO_3193
SBAL402882 SHEW185_0695SHEW185_0697SHEW185_0692SHEW185_0693SHEW185_0694SHEW185_0698
SBAL399599 SBAL195_0725SBAL195_0727SBAL195_0722SBAL195_0723SBAL195_0724SBAL195_0728
RSPH349102 RSPH17025_0117RSPH17025_1066RSPH17025_1067RSPH17025_1451RSPH17025_0591
RSPH349101 RSPH17029_2549RSPH17029_1121RSPH17029_1122RSPH17029_1827RSPH17029_2286
RSPH272943 RSP_0890RSP_2458RSP_2459RSP_0194RSP_0633
RSOL267608 RSC2958RSC2954RSC2962RSC2961RSC2960RSC2953
RRUB269796 RRU_A1528RRU_A2909RRU_A0408RRU_A2438RRU_A2931
RPOM246200 SPO_3726SPO_2672SPO_2671SPO_1007SPO_A0137
RMET266264 RMET_3255RMET_3251RMET_3259RMET_3258RMET_3257RMET_3250
RFER338969 RFER_2063RFER_2943RFER_2935RFER_2936RFER_2937RFER_2944
RFEL315456 RF_0077RF_0081RF_0080RF_0182RF_0945
REUT381666 H16_A3423H16_A3419H16_A3427H16_A3426H16_A3425H16_A3418
REUT264198 REUT_A3118REUT_A3114REUT_A3122REUT_A3121REUT_A3120REUT_A3113
RCAN293613 A1E_00450A1E_00465A1E_00460A1E_01135A1E_01970
RAKA293614 A1C_00665A1C_00740A1C_00735A1C_05890A1C_04505
PSYR223283 PSPTO_4444PSPTO_4442PSPTO_4447PSPTO_4446PSPTO_4445PSPTO_4441
PSYR205918 PSYR_4138PSYR_4136PSYR_4141PSYR_4140PSYR_4139PSYR_4135
PSTU379731 PST_1043PST_1037PST_1038PST_1039PST_1044
PSP312153 PNUC_0100PNUC_0104PNUC_0096PNUC_0097PNUC_0098PNUC_0105
PSP296591 BPRO_0797BPRO_0801BPRO_0793BPRO_0794BPRO_0795BPRO_0802
PPUT76869 PPUTGB1_0968PPUTGB1_0970PPUTGB1_0965PPUTGB1_0966PPUTGB1_0967PPUTGB1_0971
PPUT351746 PPUT_1000PPUT_1002PPUT_0997PPUT_0998PPUT_0999PPUT_1003
PPUT160488 PP_0961PP_0963PP_0958PP_0959PP_0960PP_0964
PPRO298386 PBPRA3245PBPRA3243PBPRA3248PBPRA3247PBPRA3246PBPRA3242
PNAP365044 PNAP_0689PNAP_0693PNAP_0685PNAP_0686PNAP_0687PNAP_0694
PMUL272843 PM0177PM0179PM0174PM0175PM0176PM0180
PMEN399739 PMEN_0881PMEN_0876PMEN_0877PMEN_0878PMEN_0882
PLUM243265 PLU4031PLU4029PLU4034PLU4033PLU4032PLU4028
PING357804 PING_2884PING_2882PING_2887PING_2886PING_2885PING_2881
PHAL326442 PSHAA2541PSHAA2539PSHAA2544PSHAA2543PSHAA2542PSHAA2538
PFLU220664 PFL_0926PFL_0921PFL_0922PFL_0923PFL_0927
PFLU216595 PFLU0891PFLU0893PFLU0888PFLU0889PFLU0890PFLU0894
PFLU205922 PFL_0866PFL_0868PFL_0863PFL_0864PFL_0865PFL_0869
PENT384676 PSEEN1102PSEEN1104PSEEN1099PSEEN1100PSEEN1101PSEEN1105
PCAR338963 PCAR_0451PCAR_2750PCAR_0447PCAR_0449PCAR_2690
PATL342610 PATL_0558PATL_0556PATL_0561PATL_0560PATL_0559PATL_0555
PAER208964 PA4453PA4451PA4456PA4455PA4454PA4450
PAER208963 PA14_57840PA14_57820PA14_57880PA14_57870PA14_57850PA14_57810
NOCE323261 NOC_2782NOC_2387NOC_2786NOC_2785NOC_2784NOC_2780
NMUL323848 NMUL_A2746NMUL_A2742NMUL_A2749NMUL_A2748NMUL_A2747NMUL_A0886
NMEN374833 NMCC_0252NMCC_0009NMCC_0249NMCC_0250NMCC_0251NMCC_0012
NMEN272831 NMC1935NMC2147NMC1938NMC1937NMC1936NMC2149
NMEN122587 NMA0488NMA0256NMA0485NMA0486NMA0487NMA0258
NMEN122586 NMB_1963NMB_0009NMB_1966NMB_1965NMB_1964NMB_0011
NGON242231 NGO2119NGO1920NGO2116NGO2117NGO2118NGO1918
NEUT335283 NEUT_0854NEUT_0858NEUT_0851NEUT_0852NEUT_0853NEUT_1556
NEUR228410 NE2381NE2377NE2384NE2383NE2382NE1852
MXAN246197 MXAN_3745MXAN_2023MXAN_3718MXAN_3717MXAN_4909
MSUC221988 MS1710MS1708MS1713MS1712MS1711MS1707
MSP400668 MMWYL1_2409MMWYL1_2413MMWYL1_2412MMWYL1_2411MMWYL1_2408
MPET420662 MPE_A3097MPE_A0828MPE_A3101MPE_A3100MPE_A3099MPE_A0829
MMAG342108 AMB3485AMB2116AMB0331AMB2094AMB2743AMB1982
MFLA265072 MFLA_0240MFLA_0244MFLA_0237MFLA_0238MFLA_0239MFLA_0246
MCAP243233 MCA_2792MCA_0260MCA_1969MCA_1968MCA_1967MCA_1965
MAQU351348 MAQU_2706MAQU_2704MAQU_2709MAQU_2708MAQU_2707MAQU_2703
LPNE400673 LPC_2451LPC_2449LPC_2454LPC_2453LPC_2452LPC_2448
LPNE297246 LPP0906LPP0908LPP0903LPP0904LPP0905LPP0909
LPNE297245 LPL0875LPL0877LPL0872LPL0873LPL0874LPL0878
LPNE272624 LPG0844LPG0846LPG0841LPG0842LPG0843LPG0847
LCHO395495 LCHO_3390LCHO_1584LCHO_3394LCHO_3393LCHO_3392LCHO_1585
KPNE272620 GKPORF_B2937GKPORF_B2935GKPORF_B2940GKPORF_B2939GKPORF_B2938GKPORF_B2934
JSP375286 MMA_3295MMA_3291MMA_3299MMA_3298MMA_3297MMA_3290
ILOI283942 IL0406IL0408IL0403IL0404IL0405IL0409
HSOM228400 HSM_1587HSM_1585HSM_1590HSM_1589HSM_1588HSM_1584
HSOM205914 HS_1170HS_1168HS_1173HS_1172HS_1171HS_1167
HINF71421 HI_1084HI_1082HI_1087HI_1086HI_1085HI_1081
HINF374930 CGSHIEE_06645CGSHIEE_06655CGSHIEE_06630CGSHIEE_06635CGSHIEE_06640CGSHIEE_06660
HINF281310 NTHI1247NTHI1245NTHI1250NTHI1249NTHI1248NTHI1244
HHAL349124 HHAL_2117HHAL_2115HHAL_2120HHAL_2119HHAL_2118HHAL_2114
HDUC233412 HD_0256HD_0254HD_0259HD_0258HD_0257HD_0253
HCHE349521 HCH_05308HCH_05314HCH_05313HCH_05312HCH_05307
HARS204773 HEAR3076HEAR3072HEAR3080HEAR3079HEAR3078HEAR3071
GURA351605 GURA_1043GURA_1040GURA_1039GURA_1041GURA_4059
GOXY290633 GOX0750GOX2126GOX0935GOX1115GOX0850
GMET269799 GMET_0784GMET_0787GMET_0788GMET_0786GMET_0382
GBET391165 GBCGDNIH1_0204GBCGDNIH1_1453GBCGDNIH1_2219GBCGDNIH1_1735GBCGDNIH1_1036
FTUL458234 FTA_0543FTA_0541FTA_0546FTA_0545FTA_0544
FTUL418136 FTW_0323FTW_0321FTW_0326FTW_0325FTW_0324
FTUL401614 FTN_0325FTN_0323FTN_0328FTN_0327FTN_0326
FTUL393115 FTF1611FTF1613FTF1608FTF1609FTF1610
FTUL393011 FTH_0511FTH_0509FTH_0514FTH_0513FTH_0512
FTUL351581 FTL_0514FTL_0512FTL_0517FTL_0516FTL_0515
FPHI484022 FPHI_0500FPHI_0502FPHI_0497FPHI_0498FPHI_0499
ESP42895 ENT638_3628ENT638_3626ENT638_3631ENT638_3630ENT638_3629ENT638_3625
EFER585054 EFER_3169EFER_3167EFER_3172EFER_3171EFER_3170EFER_3166
ECOO157 YRBCYRBAYRBFYRBEYRBDMURA
ECOL83334 ECS4071ECS4069ECS4074ECS4073ECS4072ECS4068
ECOL585397 ECED1_3850ECED1_3848ECED1_3853ECED1_3852ECED1_3851ECED1_3847
ECOL585057 ECIAI39_3687ECIAI39_3685ECIAI39_3690ECIAI39_3689ECIAI39_3688ECIAI39_3684
ECOL585056 ECUMN_3672ECUMN_3670ECUMN_3675ECUMN_3674ECUMN_3673ECUMN_3669
ECOL585055 EC55989_3610EC55989_3608EC55989_3613EC55989_3612EC55989_3611EC55989_3607
ECOL585035 ECS88_3574ECS88_3572ECS88_3577ECS88_3576ECS88_3575ECS88_3571
ECOL585034 ECIAI1_3340ECIAI1_3338ECIAI1_3343ECIAI1_3342ECIAI1_3341ECIAI1_3337
ECOL481805 ECOLC_0508ECOLC_0510ECOLC_0505ECOLC_0506ECOLC_0507ECOLC_0511
ECOL469008 ECBD_0550ECBD_0552ECBD_0547ECBD_0548ECBD_0549ECBD_0553
ECOL439855 ECSMS35_3488ECSMS35_3486ECSMS35_3491ECSMS35_3490ECSMS35_3489ECSMS35_3485
ECOL413997 ECB_03057ECB_03055ECB_03060ECB_03059ECB_03058ECB_03054
ECOL409438 ECSE_3476ECSE_3474ECSE_3479ECSE_3478ECSE_3477ECSE_3473
ECOL405955 APECO1_3243APECO1_3244APECO1_3240APECO1_3241APECO1_3242APECO1_3245
ECOL364106 UTI89_C3628UTI89_C3624UTI89_C3631UTI89_C3630UTI89_C3629UTI89_C3623
ECOL362663 ECP_3279ECP_3277ECP_3282ECP_3281ECP_3280ECP_3276
ECOL331111 ECE24377A_3679ECE24377A_3676ECE24377A_3683ECE24377A_3682ECE24377A_3681ECE24377A_3675
ECOL316407 ECK3181:JW3159:B3192ECK3179:JW3157:B3190ECK3184:JW3162:B3195ECK3183:JW3161:B3194ECK3182:JW3160:B3193ECK3178:JW3156:B3189
ECOL199310 C3952C3948C3955C3954C3953C3947
ECAR218491 ECA0298ECA0300ECA0295ECA0296ECA0297ECA0301
DVUL882 DVU_1243DVU_1245DVU_1246DVU_1244DVU_3258
DSHI398580 DSHI_0141DSHI_2380DSHI_2379DSHI_1391DSHI_0977
DNOD246195 DNO_0856DNO_0859DNO_0858DNO_0857DNO_0853
DDES207559 DDE_2300DDE_2298DDE_2297DDE_2299DDE_0546
DARO159087 DARO_3398DARO_3394DARO_3402DARO_3401DARO_3400DARO_3393
CVIO243365 CV_0446CV_0439CV_0449CV_0448CV_0447CV_0440
CSP78 CAUL_1575CAUL_3565CAUL_1577CAUL_1576CAUL_3602
CSP501479 CSE45_2919CSE45_1759CSE45_3923CSE45_0357CSE45_3873
CSAL290398 CSAL_2217CSAL_2215CSAL_2220CSAL_2219CSAL_2218CSAL_2214
CPSY167879 CPS_4533CPS_4531CPS_4536CPS_4535CPS_4534CPS_4530
BVIE269482 BCEP1808_0397BCEP1808_0401BCEP1808_0393BCEP1808_0394BCEP1808_0395BCEP1808_0402
BTHA271848 BTH_I3000BTH_I2996BTH_I3004BTH_I3003BTH_I3002BTH_I2995
BSP36773 BCEP18194_A3516BCEP18194_A3520BCEP18194_A3512BCEP18194_A3513BCEP18194_A3514BCEP18194_A3521
BPSE320373 BURPS668_3673BURPS668_3669BURPS668_3677BURPS668_3676BURPS668_3675BURPS668_3668
BPSE320372 BURPS1710B_A3998BURPS1710B_A3994BURPS1710B_A4002BURPS1710B_A4001BURPS1710B_A4000BURPS1710B_A3993
BPSE272560 BPSL3146BPSL3142BPSL3150BPSL3149BPSL3148BPSL3141
BPET94624 BPET0144BPET0141BPET0148BPET0147BPET0146BPET0140
BPER257313 BP3761BP3765BP3757BP3758BP3759BP3766
BPAR257311 BPP4261BPP4264BPP4257BPP4258BPP4259BPP4265
BMAL320389 BMA10247_2772BMA10247_2768BMA10247_2776BMA10247_2775BMA10247_2774BMA10247_2767
BMAL320388 BMASAVP1_A3232BMASAVP1_A3236BMASAVP1_A3228BMASAVP1_A3229BMASAVP1_A3230BMASAVP1_A3237
BMAL243160 BMA_2722BMA_2717BMA_2726BMA_2725BMA_2724BMA_2716
BCEN331272 BCEN2424_0418BCEN2424_0422BCEN2424_0414BCEN2424_0415BCEN2424_0416BCEN2424_0423
BCEN331271 BCEN_2689BCEN_2685BCEN_2693BCEN_2692BCEN_2691BCEN_2684
BBRO257310 BB4848BB4851BB4844BB4845BB4846BB4852
BBAC264462 BD1328BD0915BD3123BD3413BD0071
BAMB398577 BAMMC406_0345BAMMC406_0349BAMMC406_0341BAMMC406_0342BAMMC406_0343BAMMC406_0350
BAMB339670 BAMB_0336BAMB_0340BAMB_0332BAMB_0333BAMB_0334BAMB_0341
ASP76114 EBA2206EBA1303EBA1313EBA1312EBA1311EBA1302
ASP62977 ACIAD3241ACIAD0659ACIAD3244ACIAD3243ACIAD3242ACIAD0660
ASP62928 AZO0810AZO0814AZO0806AZO0807AZO0808AZO0815
ASP232721 AJS_0752AJS_0757AJS_0748AJS_0749AJS_0750AJS_0758
ASAL382245 ASA_0306ASA_0304ASA_0309ASA_0308ASA_0307ASA_0303
APLE434271 APJL_1302APJL_1300APJL_1305APJL_1304APJL_1303APJL_1299
APLE416269 APL_1289APL_1287APL_1292APL_1291APL_1290APL_1286
AHYD196024 AHA_3932AHA_3934AHA_3929AHA_3930AHA_3931AHA_3935
AFER243159 AFE_2865AFE_0073AFE_2868AFE_2867AFE_2866AFE_0071
AEHR187272 MLG_2220MLG_2218MLG_2223MLG_2222MLG_2221MLG_2217
ACRY349163 ACRY_0221ACRY_3016ACRY_2870ACRY_0171ACRY_1508
ABAU360910 BAV3308BAV3311BAV3304BAV3305BAV3306BAV3312
AAVE397945 AAVE_1017AAVE_1021AAVE_1013AAVE_1014AAVE_1015AAVE_1022


Organism features enriched in list (features available for 189 out of the 200 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00009241592
Disease:Bubonic_plague 0.001099466
Disease:Dysentery 0.001099466
Disease:Gastroenteritis 0.00100881013
Endospores:No 1.534e-1035211
Endospores:Yes 8.224e-9153
GC_Content_Range4:0-40 1.025e-2021213
GC_Content_Range4:40-60 7.644e-9104224
GC_Content_Range4:60-100 0.000226564145
GC_Content_Range7:30-40 9.462e-1221166
GC_Content_Range7:50-60 6.184e-1164107
GC_Content_Range7:60-70 0.000010364134
Genome_Size_Range5:0-2 5.446e-1514155
Genome_Size_Range5:2-4 0.000062844197
Genome_Size_Range5:4-6 5.689e-19107184
Genome_Size_Range5:6-10 0.00271342447
Genome_Size_Range9:1-2 2.683e-1014128
Genome_Size_Range9:2-3 0.001437826120
Genome_Size_Range9:4-5 1.630e-95796
Genome_Size_Range9:5-6 1.763e-75088
Genome_Size_Range9:6-8 0.00051392238
Gram_Stain:Gram_Neg 3.307e-40177333
Habitat:Multiple 0.001862372178
Habitat:Specialized 0.0001622653
Motility:No 5.352e-1020151
Motility:Yes 1.652e-10122267
Optimal_temp.:35-37 3.277e-71313
Optimal_temp.:37 0.005132324106
Oxygen_Req:Anaerobic 2.698e-811102
Oxygen_Req:Facultative 4.740e-689201
Pathogenic_in:No 0.000017251226
Pathogenic_in:Plant 0.00103901115
Shape:Coccus 4.714e-61082
Shape:Rod 4.126e-16156347
Shape:Spiral 0.0033469434
Temp._range:Mesophilic 0.0000465170473
Temp._range:Thermophilic 0.0000121135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 283
Effective number of orgs (counting one per cluster within 468 clusters): 220

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB41
TSP28240 Thermotoga sp.1
TSP1755 Thermoanaerobacter sp.1
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332231
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB81
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE292459 ncbi Symbiobacterium thermophilum IAM 148631
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SPNE488221 ncbi Streptococcus pneumoniae 705851
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-61
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-141
SPNE171101 ncbi Streptococcus pneumoniae R61
SPNE170187 ncbi Streptococcus pneumoniae G541
SPNE1313 Streptococcus pneumoniae1
SMUT210007 ncbi Streptococcus mutans UA1591
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SGOR29390 Streptococcus gordonii Challis1
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122281
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22561
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99411
RSP357808 ncbi Roseiflexus sp. RS-10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RALB246199 Ruminococcus albus 80
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI1
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OIHE221109 ncbi Oceanobacillus iheyensis HTE8311
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2551
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390731
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LSPH444177 ncbi Lysinibacillus sphaericus C3-411
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23651
LMON169963 ncbi Listeria monocytogenes EGD-e1
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINN272626 ncbi Listeria innocua Clip112621
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice11
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-21
GKAU235909 ncbi Geobacillus kaustophilus HTA4261
GFOR411154 ncbi Gramella forsetii KT08030
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293281
FALN326424 ncbi Frankia alni ACN14a0
EFAE226185 ncbi Enterococcus faecalis V5830
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRAD243230 ncbi Deinococcus radiodurans R10
DHAF138119 ncbi Desulfitobacterium hafniense Y511
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E881
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CPER289380 ncbi Clostridium perfringens SM1011
CPER195103 ncbi Clostridium perfringens ATCC 131241
CPER195102 ncbi Clostridium perfringens 131
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CNOV386415 ncbi Clostridium novyi NT1
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5551
CJEI306537 ncbi Corynebacterium jeikeium K4111
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDIF272563 ncbi Clostridium difficile 6301
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C1
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138260
CCAV227941 ncbi Chlamydophila caviae GPIC1
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto1
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CBOT498213 ncbi Clostridium botulinum B1 str. Okra1
CBOT441772 ncbi Clostridium botulinum F str. Langeland1
CBOT441771 ncbi Clostridium botulinum A str. Hall1
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193971
CBOT36826 Clostridium botulinum A1
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80521
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/31
BXEN266265 ncbi Burkholderia xenovorans LB4001
BWEI315730 ncbi Bacillus weihenstephanensis KBAB41
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054761
BTHU412694 ncbi Bacillus thuringiensis Al Hakam1
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-271
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BSUB ncbi Bacillus subtilis subtilis 1681
BQUI283165 ncbi Bartonella quintana Toulouse1
BPUM315750 ncbi Bacillus pumilus SAFR-0321
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145801
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-11
BHAL272558 ncbi Bacillus halodurans C-1250
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BCLA66692 ncbi Bacillus clausii KSM-K161
BCER572264 ncbi Bacillus cereus 03BB1021
BCER405917 Bacillus cereus W1
BCER315749 ncbi Bacillus cytotoxicus NVH 391-981
BCER288681 ncbi Bacillus cereus E33L1
BCER226900 ncbi Bacillus cereus ATCC 145791
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5831
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BANT592021 ncbi Bacillus anthracis A02481
BANT568206 ncbi Bacillus anthracis CDC 6841
BANT261594 ncbi Bacillus anthracis Ames Ancestor1
BANT260799 ncbi Bacillus anthracis Sterne1
BAMY326423 ncbi Bacillus amyloliquefaciens FZB421
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs1
ANAE240017 Actinomyces oris MG10
AMET293826 ncbi Alkaliphilus metalliredigens QYMF1
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
AAUR290340 ncbi Arthrobacter aurescens TC10


Names of the homologs of the genes in the group in each of these orgs
  G7659   G7657   EG12801   EG12800   EG12799   EG11358   
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852
TTHE262724
TTEN273068 TTE0158
TSP28240 TRQ2_0839
TSP1755 TETH514_0103
TROS309801
TPSE340099 TETH39_2100
TPET390874 TPET_0816
TPEN368408
TPAL243276
TMAR243274 TM_0108
TLET416591
TKOD69014
TFUS269800
TDEN243275
TACI273075
SWOL335541
STRO369723
STOK273063
STHE322159 STER_1123
STHE299768 STR1167
STHE292459 STH3304
STHE264199 STU1167
SSUI391296 SSU98_1186
SSUI391295 SSU05_1170
SSOL273057
SSAP342451 SSP0784
SPYO370554 MGAS10750_SPY0668
SPYO370553 MGAS2096_SPY0646
SPYO370552 MGAS10270_SPY0639
SPYO370551 MGAS9429_SPY0638
SPYO319701 M28_SPY0562
SPYO293653
SPYO286636 M6_SPY0601
SPYO198466 SPYM3_0502
SPYO193567
SPYO186103 SPYM18_0821
SPYO160490 SPY0763
SPNE488221 SP70585_2038
SPNE487214 SPH_2108
SPNE487213 SPT_1945
SPNE171101 SPR1781
SPNE170187 SPN09055
SPNE1313 SPJ_1959
SMUT210007 SMU_1525
SMAR399550
SHAE279808 SH0935
SGOR29390 SGO_0763
SERY405948 SACE_6866
SEPI176280 SE_1698
SEPI176279 SERP1706
SAVE227882 SAV5902
SAUR93062 SACOL2092
SAUR93061 SAOUHSC_02337
SAUR426430 NWMN_2004
SAUR418127 SAHV_2084
SAUR367830 SAUSA300_2055
SAUR359787 SAURJH1_2174
SAUR359786 SAURJH9_2136
SAUR282459 SAS2003
SAUR282458 SAR2188
SAUR273036 SAB1984C
SAUR196620 MW2024
SAUR158879 SA1902
SAUR158878
SARE391037
SALA317655 SALA_0499
SAGA211110 GBS0883
SAGA208435 SAG_0866
SAGA205921 SAK_0989
SACI330779
RXYL266117 RXYL_1636
RSP357808
RSAL288705
RCAS383372
RALB246199
PTOR263820
PTHE370438 PTH_1858
PRUM264731
PPEN278197
PMOB403833
PMAR59920 PMN2A_0895
PMAR167555 NATL1_17511
PISL384616
PINT246198
PHOR70601
PGIN242619 PG_1034
PFUR186497
PDIS435591 BDI_2401
PAST100379
PARS340102
PAER178306
PACN267747
PABY272844
OIHE221109 OB2972
NWIN323098 NWI_0246
NSEN222891 NSE_0697
NPHA348780
MTHE349307
MTHE264732 MOTH_2375
MTHE187420
MSYN262723
MSTA339860
MSP189918 MKMS_0986
MSP164757 MJLS_0996
MSP164756 MMCS_0968
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631 ML1892
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054 MFLV_5099
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBOV410289 BCG_0704
MBOV233413 MB0674
MBAR269797
MART243272
MAEO419665
MACE188937
LXYL281090
LWEL386043 LWE2474
LSPH444177 BSPH_1019
LSAK314315 LSA1123
LREU557436
LPLA220668
LMON265669 LMOF2365_2499
LMON169963 LMO2526
LMES203120
LLAC272623 L134243
LLAC272622 LACR_0548
LJOH257314 LJ_0787
LINN272626 LIN2670
LHEL405566
LGAS324831 LGAS_0545
LDEL390333
LDEL321956
LCAS321967
LBRE387344 LVIS_1276
LACI272621
KRAD266940
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963 JHP1359
HPYL357544 HPAG1_1449
HPY HP1466
HMUK485914
HMOD498761 HM1_1109
HMAR272569
HHEP235279
HBUT415426
HAUR316274
HACI382638
GTHE420246 GTNG_3289
GKAU235909 GK3341
GFOR411154
FSP1855
FSP106370
FNUC190304 FN1520
FNOD381764
FMAG334413 FMG_1500
FALN326424
EFAE226185
DSP255470
DSP216389
DRAD243230
DHAF138119 DSY4909
DGEO319795
DETH243164
CTRA471473
CTRA471472
CTET212717 CTC_00169
CSUL444179
CPRO264201 PC1752
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809 CPHY_3879
CPER289380 CPR_2616
CPER195103 CPF_2933
CPER195102 CPE2606
CPEL335992 SAR11_0036
CNOV386415 NT01CX_0527
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CKLU431943 CKL_0127
CJEI306537 JK1711
CHUT269798 CHU_2986
CGLU196627 CG0736
CFEL264202 CF0375
CEFF196164
CDIP257309
CDIF272563 CD0123
CDES477974 DAUD_1433
CCUR360105 CCV52592_1433
CCON360104
CCAV227941 CCA_00628
CBOT536232 CLM_0203
CBOT515621
CBOT508765 CLL_A3552
CBOT498213 CLD_0626
CBOT441772 CLI_0214
CBOT441771 CLC_0207
CBOT441770 CLB_0196
CBOT36826 CBO0159
CBEI290402 CBEI_5062
CACE272562 CAC3539
CABO218497 CAB602
BXEN266265 BXE_B0016
BWEI315730 BCERKBAB4_5085
BTUR314724
BTRI382640 BT_2096
BTHU412694 BALH_4792
BTHU281309 BT9727_4969
BTHE226186 BT_3838
BSUB BSU36760
BQUI283165 BQ11390
BPUM315750 BPUM_3321
BLON206672
BLIC279010 BL04004
BHER314723
BHEN283166 BH14420
BHAL272558
BGAR290434
BFRA295405 BF4084
BFRA272559 BF3899
BCLA66692 ABC3847
BCER572264 BCA_5432
BCER405917 BCE_5412
BCER315749 BCER98_3806
BCER288681 BCE33L4987
BCER226900 BC_5288
BBUR224326
BBAC360095 BARBAKC583_0201
BAPH372461 BCC_238
BANT592021 BAA_5557
BANT568206 BAMEG_5576
BANT261594 GBAA5529
BANT260799 BAS5137
BAMY326423 RBAM_033920
BAFZ390236
AYEL322098
AURANTIMONAS
ASP1667
APER272557
AORE350688 CLOS_2555
ANAE240017
AMET293826 AMET_0358
ALAI441768
AFUL224325
ACEL351607
AAUR290340


Organism features enriched in list (features available for 267 out of the 283 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 1.046e-76592
Arrangment:Clusters 1.290e-61717
Arrangment:Pairs 0.006645862112
Disease:Pharyngitis 0.001826988
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00016591111
Disease:Wide_range_of_infections 0.00016591111
Disease:bronchitis_and_pneumonitis 0.001826988
Endospores:No 2.796e-17145211
Endospores:Yes 8.688e-134853
GC_Content_Range4:0-40 2.763e-19149213
GC_Content_Range4:40-60 2.060e-676224
GC_Content_Range4:60-100 9.943e-742145
GC_Content_Range7:0-30 1.362e-63747
GC_Content_Range7:30-40 1.891e-11112166
GC_Content_Range7:50-60 4.046e-1021107
GC_Content_Range7:60-70 2.149e-834134
Genome_Size_Range5:0-2 2.891e-10104155
Genome_Size_Range5:2-4 0.0003078109197
Genome_Size_Range5:4-6 8.084e-1247184
Genome_Size_Range5:6-10 2.875e-6747
Genome_Size_Range9:0-1 0.00009572227
Genome_Size_Range9:1-2 1.329e-682128
Genome_Size_Range9:2-3 0.000039674120
Genome_Size_Range9:4-5 9.270e-72396
Genome_Size_Range9:5-6 0.00005962488
Genome_Size_Range9:6-8 1.563e-6438
Gram_Stain:Gram_Neg 3.423e-4868333
Gram_Stain:Gram_Pos 4.651e-42137150
Habitat:Specialized 0.00037423653
Motility:No 2.542e-10102151
Motility:Yes 0.0000656100267
Optimal_temp.:- 6.024e-789257
Optimal_temp.:30-37 5.699e-71818
Optimal_temp.:37 0.002392461106
Oxygen_Req:Aerobic 8.150e-661185
Oxygen_Req:Anaerobic 1.702e-1177102
Salinity:Non-halophilic 0.004153460106
Shape:Coccus 5.943e-106382
Shape:Irregular_coccus 1.290e-61717
Shape:Rod 5.832e-10123347
Shape:Sphere 0.00048691619
Temp._range:Hyperthermophilic 3.870e-62123
Temp._range:Mesophilic 0.0067265206473
Temp._range:Thermophilic 3.351e-62935



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GLYCOCAT-PWY (glycogen degradation I)2461810.7176
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181690.7138
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001950.6791
PWY-1269 (CMP-KDO biosynthesis I)3251960.6309
PWY-5918 (heme biosynthesis I)2721760.6147
AST-PWY (arginine degradation II (AST pathway))1201090.6144
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911820.6104
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961830.6057
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861780.5946
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251550.5924
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901790.5921
PWY-5913 (TCA cycle variation IV)3011820.5874
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911400.5867
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481960.5836
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951400.5739
PWY-4041 (γ-glutamyl cycle)2791720.5699
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491170.5575
TYRFUMCAT-PWY (tyrosine degradation I)1841320.5496
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761280.5460
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831310.5454
PWY-5386 (methylglyoxal degradation I)3051760.5371
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391860.5327
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911310.5196
KDOSYN-PWY (KDO transfer to lipid IVA I)1801220.4871
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491490.4848
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491490.4848
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)1791210.4827
GLUCONSUPER-PWY (D-gluconate degradation)2291410.4812
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291750.4778
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551500.4764
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81720.4702
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981930.4669
REDCITCYC (TCA cycle variation II)1741160.4609
LIPASYN-PWY (phospholipases)2121310.4567
GALACTITOLCAT-PWY (galactitol degradation)73660.4550
PWY-5669 (phosphatidylethanolamine biosynthesis I)4161940.4413
PWY-3162 (tryptophan degradation V (side chain pathway))94760.4401
POLYISOPRENSYN-PWY (polyisoprenoid biosynthesis (E. coli))116870.4395
PWY-5084 (2-ketoglutarate dehydrogenase complex)3261680.4360
P601-PWY (D-camphor degradation)95760.4352
GLUCARDEG-PWY (D-glucarate degradation I)1521030.4339
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4221940.4304
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561040.4279
PWY-5028 (histidine degradation II)130920.4253
DAPLYSINESYN-PWY (lysine biosynthesis I)3421710.4229
PWY0-981 (taurine degradation IV)106800.4206
PWY0-1182 (trehalose degradation II (trehalase))70610.4194
PWY-5148 (acyl-CoA hydrolysis)2271310.4153
PWY-5783 (octaprenyl diphosphate biosynthesis)1651060.4132
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96740.4112
PWY-5188 (tetrapyrrole biosynthesis I)4391950.4075
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001550.4039



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7657   EG12801   EG12800   EG12799   EG11358   
G76590.999720.999760.9998040.9998350.999637
G76570.9996370.9996520.9996970.999834
EG128010.9999490.9998270.99952
EG128000.999880.999511
EG127990.999614
EG11358



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PAIRWISE BLAST SCORES:

  G7659   G7657   EG12801   EG12800   EG12799   EG11358   
G76590.0f0-----
G7657-0.0f0----
EG12801--0.0f0---
EG12800---0.0f0--
EG12799----0.0f0-
EG11358-----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ABC-45-CPLX (phospholipid ABC transporter) (degree of match pw to cand: 0.800, degree of match cand to pw: 0.667, average score: 0.999)
  Genes in pathway or complex:
             0.9988 0.9986 G7658 (mlaB) G7658-MONOMER (MlaB)
   *in cand* 0.9998 0.9996 EG12799 (mlaD) EG12799-MONOMER (MlaD)
   *in cand* 0.9998 0.9995 EG12800 (mlaE) YRBE-MONOMER (MlaE)
   *in cand* 0.9998 0.9995 EG12801 (mlaF) YRBF-MONOMER (MlaF)
   *in cand* 0.9998 0.9996 G7659 (mlaC) G7659-MONOMER (MlaC)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9995 EG11358 (murA) UDPNACETYLGLUCOSAMENOLPYRTRANS-MONOMER (UDP-N-acetylglucosamine enolpyruvoyl transferase)
   *in cand* 0.9998 0.9996 G7657 (yrbA) G7657-MONOMER (predicted DNA-binding transcriptional regulator)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11358 EG12799 EG12800 EG12801 G7657 G7659 (centered at EG12799)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7659   G7657   EG12801   EG12800   EG12799   EG11358   
212/623208/623306/623317/623240/623397/623
AAEO224324:0:Tyes--8320--
AAVE397945:0:Tyes480129
ABAC204669:0:Tyes--786785-0
ABAU360910:0:Tyes470128
ABOR393595:0:Tyes01---2
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