CANDIDATE ID: 134

CANDIDATE ID: 134

NUMBER OF GENES: 6
AVERAGE SCORE:    9.9964000e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7699 (yrdD) (b3283)
   Products of gene:
     - G7699-MONOMER (predicted DNA topoisomerase)

- EG12163 (rsmB) (b3289)
   Products of gene:
     - EG12163-MONOMER (16S rRNA m5C967 methyltransferase)
       Reactions:
        cytosine967 in 16S rRNA + S-adenosyl-L-methionine  ->  5-methylcytosine967 in 16S rRNA + S-adenosyl-L-homocysteine

- EG11605 (smg) (b3284)
   Products of gene:
     - EG11605-MONOMER (conserved protein)

- EG11604 (smf) (b3286 (obsolete))
   Products of gene:
     - EG11604-MONOMER (conserved protein)

- EG11440 (def) (b3287)
   Products of gene:
     - EG11440-MONOMER (peptide deformylase)
       Reactions:
        formyl-L-methionyl peptide + H2O  ->  methionyl peptide + formate + H+

- EG11268 (fmt) (b3288)
   Products of gene:
     - EG11268-MONOMER (10-formyltetrahydrofolate:L-methionyl-tRNAfMet N-formyltransferase)
       Reactions:
        L-methionyl-tRNAfmet + 10-formyl-tetrahydrofolate + H2O  ->  N-formyl-L-methionyl-tRNAfmet + tetrahydrofolate



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ORGANISMS CONTAINING AT LEAST 5 GENES FROM THE GROUP:

Total number of orgs: 186
Effective number of orgs (counting one per cluster within 468 clusters): 124

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317586
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329536
YPES386656 ncbi Yersinia pestis Pestoides F6
YPES377628 ncbi Yersinia pestis Nepal5166
YPES360102 ncbi Yersinia pestis Antiqua6
YPES349746 ncbi Yersinia pestis Angola6
YPES214092 ncbi Yersinia pestis CO926
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80816
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A5
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110185
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103315
XFAS405440 ncbi Xylella fastidiosa M125
XFAS183190 ncbi Xylella fastidiosa Temecula15
XFAS160492 ncbi Xylella fastidiosa 9a5c5
XCAM487884 Xanthomonas campestris pv. paulliniae5
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-105
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80045
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339135
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3065
XAUT78245 ncbi Xanthobacter autotrophicus Py25
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106336
VFIS312309 ncbi Vibrio fischeri ES1146
VCHO345073 ncbi Vibrio cholerae O3956
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169616
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB45
TSP1755 Thermoanaerobacter sp.5
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332235
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252595
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen5
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT26
STHE292459 ncbi Symbiobacterium thermophilum IAM 148635
SSP94122 ncbi Shewanella sp. ANA-36
SSON300269 ncbi Shigella sonnei Ss0465
SSED425104 ncbi Shewanella sediminis HAW-EB36
SPRO399741 ncbi Serratia proteamaculans 5686
SPEA398579 ncbi Shewanella pealeana ATCC 7003456
SONE211586 ncbi Shewanella oneidensis MR-16
SLOI323850 ncbi Shewanella loihica PV-46
SHIGELLA ncbi Shigella flexneri 2a str. 2457T6
SHAL458817 ncbi Shewanella halifaxensis HAW-EB46
SGLO343509 ncbi Sodalis glossinidius morsitans5
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB5
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3016
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4766
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B676
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91506
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SDYS300267 ncbi Shigella dysenteriae Sd1976
SDEN318161 ncbi Shewanella denitrificans OS2176
SBOY300268 ncbi Shigella boydii Sb2276
SBAL402882 ncbi Shewanella baltica OS1856
SBAL399599 ncbi Shewanella baltica OS1956
RPAL258594 ncbi Rhodopseudomonas palustris CGA0095
RFER338969 ncbi Rhodoferax ferrireducens T1185
PTHE370438 ncbi Pelotomaculum thermopropionicum SI5
PSP296591 ncbi Polaromonas sp. JS6665
PPRO298386 ncbi Photobacterium profundum SS96
PNAP365044 ncbi Polaromonas naphthalenivorans CJ25
PMUL272843 ncbi Pasteurella multocida multocida Pm705
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO15
PING357804 ncbi Psychromonas ingrahamii 376
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1256
PCAR338963 ncbi Pelobacter carbinolicus DSM 23806
PATL342610 ncbi Pseudoalteromonas atlantica T6c6
NOCE323261 ncbi Nitrosococcus oceani ATCC 197075
NMEN374833 ncbi Neisseria meningitidis 0534426
NMEN272831 ncbi Neisseria meningitidis FAM186
NMEN122587 ncbi Neisseria meningitidis Z24916
NMEN122586 ncbi Neisseria meningitidis MC586
NGON242231 ncbi Neisseria gonorrhoeae FA 10906
NEUT335283 ncbi Nitrosomonas eutropha C915
NEUR228410 ncbi Nitrosomonas europaea ATCC 197185
MTHE264732 ncbi Moorella thermoacetica ATCC 390735
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E5
MSP400668 ncbi Marinomonas sp. MWYL15
MSP266779 ncbi Chelativorans sp. BNC15
MPET420662 ncbi Methylibium petroleiphilum PM15
MFLA265072 ncbi Methylobacillus flagellatus KT5
MCAP243233 ncbi Methylococcus capsulatus Bath6
MAQU351348 ncbi Marinobacter aquaeolei VT85
LPNE400673 ncbi Legionella pneumophila Corby5
LPNE297246 ncbi Legionella pneumophila Paris5
LPNE297245 ncbi Legionella pneumophila Lens5
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 15
LCHO395495 ncbi Leptothrix cholodnii SP-65
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785786
JSP375286 ncbi Janthinobacterium sp. Marseille5
ILOI283942 ncbi Idiomarina loihiensis L2TR6
HSOM228400 ncbi Haemophilus somnus 23365
HSOM205914 ncbi Haemophilus somnus 129PT5
HINF71421 ncbi Haemophilus influenzae Rd KW205
HINF374930 ncbi Haemophilus influenzae PittEE5
HINF281310 ncbi Haemophilus influenzae 86-028NP5
HHAL349124 ncbi Halorhodospira halophila SL15
HDUC233412 ncbi Haemophilus ducreyi 35000HP5
HARS204773 ncbi Herminiimonas arsenicoxydans5
GURA351605 ncbi Geobacter uraniireducens Rf45
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-25
GSUL243231 ncbi Geobacter sulfurreducens PCA5
GMET269799 ncbi Geobacter metallireducens GS-155
GKAU235909 ncbi Geobacillus kaustophilus HTA4265
FTUL418136 ncbi Francisella tularensis tularensis WY96-34185
FTUL401614 ncbi Francisella novicida U1125
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250175
ESP42895 Enterobacter sp.6
EFER585054 ncbi Escherichia fergusonii ATCC 354696
ECOO157 ncbi Escherichia coli O157:H7 EDL9336
ECOL83334 Escherichia coli O157:H76
ECOL585397 ncbi Escherichia coli ED1a6
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0266
ECOL585055 ncbi Escherichia coli 559896
ECOL585035 ncbi Escherichia coli S886
ECOL585034 ncbi Escherichia coli IAI16
ECOL481805 ncbi Escherichia coli ATCC 87396
ECOL469008 ncbi Escherichia coli BL21(DE3)6
ECOL439855 ncbi Escherichia coli SMS-3-56
ECOL413997 ncbi Escherichia coli B str. REL6066
ECOL409438 ncbi Escherichia coli SE116
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI896
ECOL362663 ncbi Escherichia coli 5366
ECOL331111 ncbi Escherichia coli E24377A6
ECOL316407 ncbi Escherichia coli K-12 substr. W31106
ECOL199310 ncbi Escherichia coli CFT0736
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10436
DRED349161 ncbi Desulfotomaculum reducens MI-15
DOLE96561 ncbi Desulfococcus oleovorans Hxd35
DNOD246195 ncbi Dichelobacter nodosus VCS1703A5
DHAF138119 ncbi Desulfitobacterium hafniense Y515
CVIO243365 ncbi Chromobacterium violaceum ATCC 124726
CTET212717 ncbi Clostridium tetani E885
CPSY167879 ncbi Colwellia psychrerythraea 34H6
CPER289380 ncbi Clostridium perfringens SM1015
CPER195103 ncbi Clostridium perfringens ATCC 131245
CPER195102 ncbi Clostridium perfringens 135
CNOV386415 ncbi Clostridium novyi NT5
CKLU431943 ncbi Clostridium kluyveri DSM 5555
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29015
CDIF272563 ncbi Clostridium difficile 6305
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1116
CBUR360115 ncbi Coxiella burnetii RSA 3316
CBUR227377 ncbi Coxiella burnetii RSA 4936
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto5
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6575
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B5
CBOT498213 ncbi Clostridium botulinum B1 str. Okra5
CBOT441772 ncbi Clostridium botulinum F str. Langeland5
CBOT441771 ncbi Clostridium botulinum A str. Hall5
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193975
CBOT36826 Clostridium botulinum A5
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80525
CACE272562 ncbi Clostridium acetobutylicum ATCC 8245
BWEI315730 ncbi Bacillus weihenstephanensis KBAB45
BTHU412694 ncbi Bacillus thuringiensis Al Hakam5
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-275
BSUB ncbi Bacillus subtilis subtilis 1685
BSP376 Bradyrhizobium sp.5
BPUM315750 ncbi Bacillus pumilus SAFR-0325
BPET94624 Bordetella petrii5
BPER257313 ncbi Bordetella pertussis Tohama I5
BPAR257311 ncbi Bordetella parapertussis 128225
BLIC279010 ncbi Bacillus licheniformis ATCC 145805
BCER572264 ncbi Bacillus cereus 03BB1025
BCER405917 Bacillus cereus W5
BCER315749 ncbi Bacillus cytotoxicus NVH 391-985
BCER288681 ncbi Bacillus cereus E33L5
BCER226900 ncbi Bacillus cereus ATCC 145795
BBRO257310 ncbi Bordetella bronchiseptica RB505
BAMY326423 ncbi Bacillus amyloliquefaciens FZB425
ASP76114 ncbi Aromatoleum aromaticum EbN15
ASP62928 ncbi Azoarcus sp. BH725
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4496
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL035
AORE350688 ncbi Alkaliphilus oremlandii OhILAs5
AMET293826 ncbi Alkaliphilus metalliredigens QYMF5
AHYD196024 Aeromonas hydrophila dhakensis6
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232706
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-15
ABAU360910 ncbi Bordetella avium 197N5
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3455


Names of the homologs of the genes in the group in each of these orgs
  G7699   EG12163   EG11605   EG11604   EG11440   EG11268   
YPSE349747 YPSIP31758_3879YPSIP31758_3884YPSIP31758_3880YPSIP31758_3881YPSIP31758_3882YPSIP31758_3883
YPSE273123 YPTB3662YPTB3667YPTB3663YPTB3664YPTB3665YPTB3666
YPES386656 YPDSF_0167YPDSF_0162YPDSF_0166YPDSF_0165YPDSF_0164YPDSF_0163
YPES377628 YPN_3824YPN_3829YPN_3825YPN_3826YPN_3827YPN_3828
YPES360102 YPA_3228YPA_3233YPA_3229YPA_3230YPA_3231YPA_3232
YPES349746 YPANGOLA_A0620YPANGOLA_A0613YPANGOLA_A0619YPANGOLA_A0616YPANGOLA_A0615YPANGOLA_A0614
YPES214092 YPO0245YPO0240YPO0244YPO0243YPO0242YPO0241
YPES187410 Y4026Y4021Y4025Y4024Y4023Y4022
YENT393305 YE3886YE3891YE3887YE3888YE3889YE3890
XORY360094 XOOORF_0698XOOORF_0693XOOORF_0694XOOORF_0696XOOORF_0697
XORY342109 XOO0548XOO0543XOO0544XOO0546XOO0547
XORY291331 XOO0587XOO0582XOO0583XOO0585XOO0586
XFAS405440 XFASM12_1927XFASM12_1932XFASM12_1931XFASM12_1929XFASM12_1928
XFAS183190 PD_1761PD_1766PD_1765PD_1763PD_1762
XFAS160492 XF0928XF0923XF0924XF0926XF0927
XCAM487884 XCC-B100_3928XCC-B100_3933XCC-B100_3932XCC-B100_3930XCC-B100_3929
XCAM316273 XCAORF_0559XCAORF_0553XCAORF_0554XCAORF_0556XCAORF_0558
XCAM314565 XC_3817XC_3822XC_3821XC_3819XC_3818
XCAM190485 XCC3747XCC3752XCC3751XCC3749XCC3748
XAXO190486 XAC3799XAC3804XAC3803XAC3801XAC3800
XAUT78245 XAUT_2962XAUT_0941XAUT_3916XAUT_3305XAUT_3304
VVUL216895 VV1_1052VV1_1046VV1_1051VV1_1050VV1_1048VV1_1047
VVUL196600 VV3221VV3227VV3222VV3223VV3225VV3226
VPAR223926 VP3038VP3044VP3039VP3040VP3042VP3043
VFIS312309 VF2539VF2545VF2540VF2541VF2543VF2544
VCHO345073 VC0395_A2469VC0395_A2475VC0395_A2470VC0395_A2471VC0395_A2473VC0395_A2474
VCHO VC0050VC0044VC0049VC0048VC0046VC0045
TTEN273068 TTE1449TTE1503TTE1450TTE1507TTE1506
TSP1755 TETH514_1700TETH514_1752TETH514_1701TETH514_1757TETH514_1755
TPSE340099 TETH39_1264TETH39_1316TETH39_1265TETH39_1320TETH39_1319
TDEN292415 TBD_0016TBD_0011TBD_0012TBD_0014TBD_0015
SWOL335541 SWOL_0840SWOL_1228SWOL_0839SWOL_1232SWOL_1231
STYP99287 STM3403STM3408STM3404STM3405STM3406STM3407
STHE292459 STH1481STH1349STH1480STH1343STH1344
SSP94122 SHEWANA3_0039SHEWANA3_0033SHEWANA3_0038SHEWANA3_0037SHEWANA3_0035SHEWANA3_0034
SSON300269 SSO_3429SSO_3425SSO_3426SSO_3427SSO_3428
SSED425104 SSED_0040SSED_0033SSED_0038SSED_0037SSED_0035SSED_0034
SPRO399741 SPRO_4508SPRO_4513SPRO_4509SPRO_4510SPRO_4511SPRO_4512
SPEA398579 SPEA_0036SPEA_0029SPEA_0034SPEA_0033SPEA_0031SPEA_0030
SONE211586 SO_0036SO_0030SO_0035SO_0034SO_0032SO_0031
SLOI323850 SHEW_3731SHEW_3738SHEW_3733SHEW_3734SHEW_3736SHEW_3737
SHIGELLA YRDDSUNSMGSMFDEFFMT
SHAL458817 SHAL_0032SHAL_0025SHAL_0030SHAL_0029SHAL_0027SHAL_0026
SGLO343509 SG2244SG2248SG2245SG2246SG2247
SFUM335543 SFUM_0213SFUM_0150SFUM_0212SFUM_0147SFUM_0148
SFLE373384 SFV_3308SFV_3304SFV_3305SFV_3306SFV_3307
SFLE198214 AAN44778.1AAN44783.1AAN44779.1AAN44780.1AAN44781.1AAN44782.1
SENT454169 SEHA_C3707SEHA_C3712SEHA_C3708SEHA_C3709SEHA_C3710SEHA_C3711
SENT321314 SCH_3339SCH_3344SCH_3340SCH_3341SCH_3342SCH_3343
SENT295319 SPA3270SPA3275SPA3271SPA3272SPA3273SPA3274
SENT220341 STY4394STY4389STY4393STY4392STY4391STY4390
SENT209261 T4101T4096T4100T4099T4098T4097
SDYS300267 SDY_3460SDY_3465SDY_3461SDY_3462SDY_3463SDY_3464
SDEN318161 SDEN_0028SDEN_0022SDEN_0027SDEN_0026SDEN_0024SDEN_0023
SBOY300268 SBO_3277SBO_3282SBO_3278SBO_3279SBO_3280SBO_3281
SBAL402882 SHEW185_0031SHEW185_0025SHEW185_0030SHEW185_0029SHEW185_0027SHEW185_0026
SBAL399599 SBAL195_0035SBAL195_0029SBAL195_0034SBAL195_0033SBAL195_0031SBAL195_0030
RPAL258594 RPA3124RPA0030RPA3120RPA0621RPA0622
RFER338969 RFER_3590RFER_3863RFER_3862RFER_3860RFER_3859
PTHE370438 PTH_1246PTH_1788PTH_1245PTH_1791PTH_1790
PSP296591 BPRO_4436BPRO_4642BPRO_4641BPRO_4639BPRO_4638
PPRO298386 PBPRA3575PBPRA3581PBPRA3576PBPRA3577PBPRA3579PBPRA3580
PNAP365044 PNAP_3632PNAP_3882PNAP_3881PNAP_3878PNAP_3877
PMUL272843 PM1269PM1561PM1599PM1559PM1560
PLUM243265 PLU4693PLU4697PLU4694PLU4695PLU4696
PING357804 PING_0074PING_0080PING_0075PING_0076PING_0078PING_0079
PHAL326442 PSHAA0027PSHAA0021PSHAA0026PSHAA0025PSHAA0023PSHAA0022
PCAR338963 PCAR_0406PCAR_0241PCAR_0407PCAR_0408PCAR_0245PCAR_0244
PATL342610 PATL_0027PATL_0021PATL_0026PATL_0025PATL_0023PATL_0022
NOCE323261 NOC_3016NOC_3011NOC_3012NOC_3014NOC_3015
NMEN374833 NMCC_2030NMCC_2036NMCC_2031NMCC_2032NMCC_2039NMCC_2038
NMEN272831 NMC0110NMC0104NMC0109NMC0108NMC0102NMC0103
NMEN122587 NMA0156NMA0162NMA0157NMA0158NMA0164NMA0163
NMEN122586 NMB_0118NMB_0112NMB_0117NMB_0116NMB_0110NMB_0111
NGON242231 NGO1863NGO1869NGO1864NGO1865NGO1871NGO1870
NEUT335283 NEUT_0390NEUT_0395NEUT_0394NEUT_0392NEUT_0391
NEUR228410 NE1972NE1967NE1968NE1970NE1971
MTHE264732 MOTH_1026MOTH_0900MOTH_1025MOTH_0897MOTH_0898
MSUC221988 MS0131MS2203MS0041MS2201MS2202
MSP400668 MMWYL1_2218MMWYL1_0015MMWYL1_0018MMWYL1_0017MMWYL1_0016
MSP266779 MESO_1354MESO_3418MESO_1356MESO_0394MESO_0393
MPET420662 MPE_A0272MPE_A0280MPE_A0281MPE_A0283MPE_A0284
MFLA265072 MFLA_0184MFLA_0190MFLA_0189MFLA_0187MFLA_0186
MCAP243233 MCA_2839MCA_2845MCA_2840MCA_2841MCA_2843MCA_2844
MAQU351348 MAQU_2529MAQU_0041MAQU_0045MAQU_0043MAQU_0042
LPNE400673 LPC_0543LPC_0549LPC_0545LPC_0547LPC_0548
LPNE297246 LPP2652LPP2646LPP2650LPP2648LPP2647
LPNE297245 LPL2522LPL2516LPL2520LPL2518LPL2517
LPNE272624 LPG2599LPG2593LPG2597LPG2595LPG2594
LCHO395495 LCHO_4003LCHO_0347LCHO_0348LCHO_0350LCHO_0351
KPNE272620 GKPORF_B3024GKPORF_B3029GKPORF_B3025GKPORF_B3026GKPORF_B3027GKPORF_B3028
JSP375286 MMA_0158MMA_0140MMA_0141MMA_0143MMA_0144
ILOI283942 IL0021IL0016IL0020IL0019IL0018IL0017
HSOM228400 HSM_1899HSM_1932HSM_0737HSM_1934HSM_1933
HSOM205914 HS_0008HS_0039HS_0412HS_0041HS_0040
HINF71421 HI_0656.1HI_0624HI_0985HI_0622HI_0623
HINF374930 CGSHIEE_08910CGSHIEE_09110CGSHIEE_07040CGSHIEE_09120CGSHIEE_09115
HINF281310 NTHI0778NTHI0723NTHI1157NTHI0725NTHI0724
HHAL349124 HHAL_2321HHAL_2325HHAL_2324HHAL_2323HHAL_2322
HDUC233412 HD_0413HD_1992HD_1888HD_1889HD_2029
HARS204773 HEAR0133HEAR0115HEAR0116HEAR0118HEAR0119
GURA351605 GURA_3689GURA_0193GURA_3690GURA_0818GURA_0819
GTHE420246 GTNG_1064GTNG_1026GTNG_1063GTNG_1024GTNG_1025
GSUL243231 GSU_2549GSU_3373GSU_2550GSU_0129GSU_0130
GMET269799 GMET_0891GMET_0066GMET_0890GMET_3338GMET_3339
GKAU235909 GK1211GK1173GK1210GK1171GK1172
FTUL418136 FTW_1273FTW_0506FTW_1356FTW_1942FTW_0818
FTUL401614 FTN_0432FTN_1347FTN_0345FTN_0110FTN_0803
FPHI484022 FPHI_0406FPHI_1340FPHI_0479FPHI_0717FPHI_1814
ESP42895 ENT638_3715ENT638_3720ENT638_3716ENT638_3717ENT638_3718ENT638_3719
EFER585054 EFER_3267EFER_3272EFER_3268EFER_3269EFER_3270EFER_3271
ECOO157 YRDDSUNSMGSMFDEFFMT
ECOL83334 ECS4149ECS4154ECS4150ECS4151ECS4152ECS4153
ECOL585397 ECED1_3947ECED1_3952ECED1_3948ECED1_3949ECED1_3950ECED1_3951
ECOL585057 ECIAI39_3777ECIAI39_3783ECIAI39_3778ECIAI39_3781ECIAI39_3782
ECOL585056 ECUMN_3757ECUMN_3762ECUMN_3758ECUMN_3759ECUMN_3760ECUMN_3761
ECOL585055 EC55989_3700EC55989_3705EC55989_3701EC55989_3702EC55989_3703EC55989_3704
ECOL585035 ECS88_3671ECS88_3676ECS88_3672ECS88_3673ECS88_3674ECS88_3675
ECOL585034 ECIAI1_3433ECIAI1_3438ECIAI1_3434ECIAI1_3435ECIAI1_3436ECIAI1_3437
ECOL481805 ECOLC_0430ECOLC_0425ECOLC_0429ECOLC_0428ECOLC_0427ECOLC_0426
ECOL469008 ECBD_0468ECBD_0463ECBD_0467ECBD_0466ECBD_0465ECBD_0464
ECOL439855 ECSMS35_3579ECSMS35_3584ECSMS35_3580ECSMS35_3581ECSMS35_3582ECSMS35_3583
ECOL413997 ECB_03134ECB_03139ECB_03135ECB_03136ECB_03137ECB_03138
ECOL409438 ECSE_3558ECSE_3563ECSE_3559ECSE_3560ECSE_3561ECSE_3562
ECOL405955 APECO1_3163APECO1_3158APECO1_3162APECO1_3161APECO1_3160APECO1_3159
ECOL364106 UTI89_C3728UTI89_C3733UTI89_C3729UTI89_C3730UTI89_C3731UTI89_C3732
ECOL362663 ECP_3371ECP_3376ECP_3372ECP_3373ECP_3374ECP_3375
ECOL331111 ECE24377A_3766ECE24377A_3771ECE24377A_3767ECE24377A_3768ECE24377A_3769ECE24377A_3770
ECOL316407 ECK3270:JW5949:B3283ECK3275:JW3250:B3289ECK3271:JW3245:B3284ECK3272:JW5708:B4473ECK3273:JW3248:B3287ECK3274:JW3249:B3288
ECOL199310 C4044C4049C4045C4046C4047C4048
ECAR218491 ECA3996ECA4001ECA3997ECA3998ECA3999ECA4000
DRED349161 DRED_1984DRED_1707DRED_1985DRED_1704DRED_1705
DOLE96561 DOLE_2445DOLE_2231DOLE_2444DOLE_2233DOLE_2232
DNOD246195 DNO_0158DNO_0153DNO_0154DNO_0156DNO_0157
DHAF138119 DSY2554DSY2692DSY2555DSY2694DSY2693
CVIO243365 CV_4269CV_4262CV_4268CV_4267CV_4265CV_4264
CTET212717 CTC_01259CTC_01222CTC_01258CTC_01219CTC_01220
CPSY167879 CPS_0024CPS_0018CPS_0023CPS_0022CPS_0020CPS_0019
CPER289380 CPR_1674CPR_1712CPR_1675CPR_1715CPR_1714
CPER195103 CPF_1956CPF_1994CPF_1957CPF_1997CPF_1996
CPER195102 CPE1702CPE1741CPE1703CPE1744CPE1743
CNOV386415 NT01CX_2151NT01CX_2242NT01CX_2152NT01CX_2245NT01CX_2244
CKLU431943 CKL_1415CKL_1372CKL_1414CKL_1369CKL_1370
CHYD246194 CHY_1794CHY_1481CHY_1795CHY_1484CHY_1483
CDIF272563 CD1274CD2581CD1273CD2585CD2584
CBUR434922 COXBU7E912_2100COXBU7E912_0205COXBU7E912_2099COXBU7E912_2098COXBU7E912_1053COXBU7E912_2096
CBUR360115 COXBURSA331_A0086COXBURSA331_A2118COXBURSA331_A0087COXBURSA331_A0088COXBURSA331_A0945COXBURSA331_A0090
CBUR227377 CBU_2000CBU_1915CBU_1999CBU_1998CBU_0993CBU_1997
CBOT536232 CLM_2730CLM_2807CLM_2731CLM_2810CLM_2809
CBOT515621 CLJ_B2662CLJ_B2737CLJ_B2663CLJ_B2740CLJ_B2739
CBOT508765 CLL_A1256CLL_A1218CLL_A1255CLL_A1215CLL_A1216
CBOT498213 CLD_2203CLD_2130CLD_2202CLD_2127CLD_2128
CBOT441772 CLI_2493CLI_2568CLI_2494CLI_2571CLI_2570
CBOT441771 CLC_2285CLC_2362CLC_2286CLC_2365CLC_2364
CBOT441770 CLB_2301CLB_2380CLB_2302CLB_2383CLB_2382
CBOT36826 CBO2437CBO2507CBO2438CBO2510CBO2509
CBEI290402 CBEI_1186CBEI_1148CBEI_1185CBEI_1145CBEI_1146
CACE272562 CAC1785CAC1725CAC1784CAC1722CAC1723
BWEI315730 BCERKBAB4_3656BCERKBAB4_3688BCERKBAB4_3657BCERKBAB4_3690BCERKBAB4_3689
BTHU412694 BALH_3464BALH_3496BALH_3465BALH_3498BALH_3497
BTHU281309 BT9727_3574BT9727_3606BT9727_3575BT9727_3608BT9727_3607
BSUB BSU16120BSU15740BSU16110BSU15720BSU15730
BSP376 BRADO4508BRADO0340BRADO4506BRADO0770BRADO0771
BPUM315750 BPUM_1510BPUM_1473BPUM_1509BPUM_1471BPUM_1472
BPET94624 BPET4711BPET0038BPET4728BPET4727BPET4726
BPER257313 BP0569BP0457BP0555BP0552BP0551
BPAR257311 BPP0259BPP4371BPP0240BPP0243BPP0244
BLIC279010 BL01281BL02299BL01283BL02297BL02298
BCER572264 BCA_3932BCA_3965BCA_3933BCA_3967BCA_3966
BCER405917 BCE_3875BCE_3907BCE_3876BCE_3910BCE_3908
BCER315749 BCER98_2485BCER98_2517BCER98_2486BCER98_2519BCER98_2518
BCER288681 BCE33L3592BCE33L3624BCE33L3593BCE33L3626BCE33L3625
BCER226900 BC_3831BC_3863BC_3832BC_3865BC_3864
BBRO257310 BB0262BB4957BB0244BB0247BB0248
BAMY326423 RBAM_015950RBAM_015570RBAM_015940RBAM_015550RBAM_015560
ASP76114 EBA2833EBA2962EBA2961EBB91EBA2954
ASP62928 AZO3985AZO0096AZO0097AZO0099AZO0100
ASAL382245 ASA_4136ASA_4142ASA_4137ASA_4138ASA_4140ASA_4141
APLE434271 APJL_1160APJL_1588APJL_1744APJL_1743APJL_1620
AORE350688 CLOS_1474CLOS_1431CLOS_1473CLOS_1427CLOS_1428
AMET293826 AMET_2735AMET_2782AMET_2736AMET_2786AMET_2785
AHYD196024 AHA_0262AHA_0256AHA_0261AHA_0260AHA_0258AHA_0257
AFER243159 AFE_3009AFE_3003AFE_3008AFE_3007AFE_3005AFE_3004
AEHR187272 MLG_2626MLG_2631MLG_2630MLG_2628MLG_2627
ABAU360910 BAV0228BAV3377BAV0198BAV0202BAV0203
ABAC204669 ACID345_3340ACID345_4229ACID345_3341ACID345_4287ACID345_4228


Organism features enriched in list (features available for 177 out of the 186 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 6.600e-858112
Arrangment:Singles 0.006526699286
Disease:Botulism 0.002478855
Disease:Bubonic_plague 0.000737666
Disease:Dysentery 0.000737666
Disease:Gastroenteritis 0.00056341013
Disease:Legionnaire's_disease 0.008296244
Disease:Meningitis_and_septicemia 0.008296244
Endospores:No 6.423e-1229211
Endospores:Yes 3.536e-73353
GC_Content_Range4:0-40 7.040e-642213
GC_Content_Range4:40-60 1.375e-13108224
GC_Content_Range4:60-100 0.000115227145
GC_Content_Range7:30-40 2.018e-628166
GC_Content_Range7:40-50 0.003470447117
GC_Content_Range7:50-60 1.200e-1061107
GC_Content_Range7:60-70 0.001015727134
Genome_Size_Range5:0-2 1.401e-188155
Genome_Size_Range5:4-6 8.288e-26111184
Genome_Size_Range5:6-10 4.004e-7147
Genome_Size_Range9:1-2 1.310e-138128
Genome_Size_Range9:4-5 2.918e-125996
Genome_Size_Range9:5-6 7.952e-105288
Genome_Size_Range9:6-8 0.0000112138
Gram_Stain:Gram_Neg 1.971e-9133333
Gram_Stain:Gram_Pos 0.004674334150
Habitat:Specialized 0.0042050853
Motility:No 2.313e-1017151
Motility:Yes 1.145e-8112267
Optimal_temp.:35-37 1.357e-71313
Oxygen_Req:Facultative 5.494e-787201
Pathogenic_in:Human 0.005326777213
Pathogenic_in:No 0.000179450226
Shape:Coccus 7.067e-6982
Shape:Rod 9.042e-15146347
Shape:Spiral 0.0003663234
Temp._range:Mesophilic 0.0085783153473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 166
Effective number of orgs (counting one per cluster within 468 clusters): 143

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WPIP80849 Wolbachia endosymbiont of Brugia malayi1
UURE95667 Ureaplasma urealyticum serovar 131
UURE95664 Ureaplasma urealyticum serovar 101
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278151
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TLET416591 ncbi Thermotoga lettingae TMO1
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TFUS269800 ncbi Thermobifida fusca YX1
TACI273075 ncbi Thermoplasma acidophilum DSM 17281
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 70
SSP84588 ncbi Synechococcus sp. WH 81021
SSP64471 ncbi Synechococcus sp. CC93111
SSOL273057 ncbi Sulfolobus solfataricus P20
SMAR399550 ncbi Staphylothermus marinus F11
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23380
SCO ncbi Streptomyces coelicolor A3(2)1
SARE391037 ncbi Salinispora arenicola CNS-2050
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99411
RTYP257363 ncbi Rickettsia typhi Wilmington1
RSP101510 ncbi Rhodococcus jostii RHA10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith1
RMAS416276 ncbi Rickettsia massiliae MTU51
RBEL391896 ncbi Rickettsia bellii OSU 85-3891
RAKA293614 ncbi Rickettsia akari Hartford1
PTOR263820 ncbi Picrophilus torridus DSM 97901
PSP117 Pirellula sp.1
PRUM264731 ncbi Prevotella ruminicola 230
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT31
PGIN242619 ncbi Porphyromonas gingivalis W830
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PAST100379 Onion yellows phytoplasma1
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE51
NSP35761 Nocardioides sp.1
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
NFAR247156 ncbi Nocardia farcinica IFM 101521
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1550
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1291
MPEN272633 ncbi Mycoplasma penetrans HF-21
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S21
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G371
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
GFOR411154 ncbi Gramella forsetii KT08030
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
FALN326424 ncbi Frankia alni ACN14a0
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
DRAD243230 ncbi Deinococcus radiodurans R11
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CJEI306537 ncbi Corynebacterium jeikeium K4110
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CCAV227941 ncbi Chlamydophila caviae GPIC1
CABO218497 ncbi Chlamydophila abortus S26/31
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1350
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB1
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.0
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG10
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40181
AAUR290340 ncbi Arthrobacter aurescens TC10


Names of the homologs of the genes in the group in each of these orgs
  G7699   EG12163   EG11605   EG11604   EG11440   EG11268   
WPIP80849 WB_0187
UURE95667 UU590
UURE95664 UUR10_0695
UPAR505682 UPA3_0630
UMET351160
TWHI218496
TWHI203267
TVOL273116 TVN0019
TPEN368408
TLET416591 TLET_0292
TKOD69014 TK1935
TFUS269800 TFU_1726
TACI273075 TA0063
STRO369723 STROP_1870
STOK273063
SSP84588 SYNW1679OR3038
SSP64471 GSYN0731
SSOL273057
SMAR399550 SMAR_0376
SERY405948
SCO SCO1473
SARE391037
SACI330779
RXYL266117 RXYL_1396
RTYP257363 RT0197
RSP101510
RSAL288705
RRIC392021 A1G_01595
RMAS416276 RMA_0279
RBEL391896 A1I_03205
RAKA293614 A1C_01560
PTOR263820 PTO0747
PSP117 RB10519
PRUM264731
PMAR74547 PMT0270
PISL384616
PINT246198
PHOR70601 PH0851
PGIN242619
PDIS435591
PAST100379 PAM279
PARS340102
PAER178306
PACN267747
PABY272844 PAB0830
NSP35761 NOCA_2268
NSEN222891
NPHA348780 NP1222A
NFAR247156 NFA41400
MVAN350058
MTUB419947
MTUB336982
MTHE349307
MTHE187420 MTH1624
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP189918
MSP164757
MSP164756
MSME246196
MSED399549
MPUL272635
MPNE272634 MPN261
MPEN272633 MYPE4140
MMYC272632
MMOB267748
MMAZ192952
MMAR444158 MMARC6_1699
MMAR426368 MMARC7_0203
MMAR402880 MMARC5_0781
MMAR368407
MMAR267377 MMP0956
MLEP272631
MLAB410358 MLAB_0192
MKAN190192 MK1539
MJAN243232 MJ_1652
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273 MG_122
MFLO265311
MCAP340047
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAEO419665 MAEO_0026
MACE188937
MABS561007
LXYL281090
LLAC272623 L0298
LINT267671
LINT189518
LBOR355277
LBOR355276
LBIF456481
LBIF355278
KRAD266940 KRAD_2984
IHOS453591
HWAL362976 HQ1267A
HSP64091 VNG0349G
HSAL478009 OE1528F
HMUK485914 HMUK_3010
HMAR272569 RRNAC1645
HBUT415426 HBUT_0511
GFOR411154
FSP1855
FSP106370
FNOD381764 FNOD_1572
FJOH376686 FJOH_3691
FALN326424
ECHA205920 ECH_0883
DRAD243230 DR_0120
DGEO319795 DGEO_2345
CTRA471473 CTLON_0011
CTRA471472 CTL0011
CSUL444179
CPNE182082 CPB0796
CPNE138677 CPJ0769
CPNE115713 CPN0769
CPNE115711 CP_1103
CPEL335992 SAR11_0456
CMUR243161 TC_0012
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CJEJ407148 C8J_1583
CJEJ360109 JJD26997_2058
CJEJ354242 CJJ81176_1678
CJEJ195099 CJE_1854
CJEJ192222 CJ1686C
CJEI306537
CGLU196627 CG1802
CFEL264202 CF0025
CEFF196164 CE1718
CDIP257309 DIP1321
CCAV227941 CCA_00988
CABO218497 CAB958
BXEN266265
BTUR314724
BLON206672 BL1789
BHER314723
BGAR290434
BFRA295405 BF3903
BFRA272559 BF3673
BBUR224326
BAPH372461 BCC_313
BAFZ390236
AYEL322098 AYWB_442
AURANTIMONAS
ASP1667
APER272557
ANAE240017
ALAI441768 ACL_0339
AFUL224325 AF_1806
ACEL351607
ABUT367737 ABU_1700
AAUR290340


Organism features enriched in list (features available for 155 out of the 166 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00039611292
Arrangment:Pairs 0.000303016112
Arrangment:Singles 0.000850492286
Disease:Leptospirosis 0.004855044
Disease:Pharyngitis 0.000021888
Disease:bronchitis_and_pneumonitis 0.000021888
Endospores:No 8.433e-19102211
Endospores:Yes 0.0078666753
GC_Content_Range7:0-30 0.00011562447
GC_Content_Range7:50-60 0.003508118107
GC_Content_Range7:70-100 0.0001703911
Genome_Size_Range5:0-2 1.636e-1072155
Genome_Size_Range5:4-6 3.100e-725184
Genome_Size_Range9:0-1 1.427e-92227
Genome_Size_Range9:1-2 0.000175650128
Genome_Size_Range9:4-5 0.00045851396
Genome_Size_Range9:5-6 0.00088111288
Gram_Stain:Gram_Neg 4.266e-1154333
Habitat:Multiple 0.000125630178
Habitat:Specialized 0.00249032353
Motility:No 6.438e-661151
Motility:Yes 0.000438354267
Optimal_temp.:- 0.001110953257
Optimal_temp.:37 0.000937441106
Optimal_temp.:85 0.004855044
Oxygen_Req:Anaerobic 0.001600039102
Oxygen_Req:Facultative 3.400e-925201
Shape:Irregular_coccus 1.078e-71517
Shape:Rod 3.167e-766347
Shape:Sphere 1.432e-71619
Shape:Spiral 0.00157211734
Temp._range:Hyperthermophilic 1.579e-61723
Temp._range:Mesophilic 0.0066486116473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181230.4259



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG12163   EG11605   EG11604   EG11440   EG11268   
G76990.9993120.9994660.9998860.9993730.999361
EG121630.9994330.999660.9998490.999945
EG116050.9996680.9995760.999549
EG116040.9997880.999745
EG114400.999989
EG11268



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PAIRWISE BLAST SCORES:

  G7699   EG12163   EG11605   EG11604   EG11440   EG11268   
G76990.0f0-----
EG12163-0.0f0----
EG11605--0.0f0---
EG11604---0.0f0--
EG11440----0.0f0-
EG11268-----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11268 EG11440 EG11604 EG11605 EG12163 G7699 (centered at EG11440)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7699   EG12163   EG11605   EG11604   EG11440   EG11268   
311/623396/623119/623411/623378/623410/623
AAEO224324:0:Tyes----01087
AAVE397945:0:Tyes-0-156158160
ABAC204669:0:Tyes0899-1959898
ABAU360910:0:Tyes-303190045
ABOR393595:0:Tyes-0-421
ABUT367737:0:Tyes----0-
ACAU438753:0:Tyes-3957-207710
ACRY349163:8:Tyes-2253-32001
ADEH290397:0:Tyes1996--199703278
AEHR187272:0:Tyes-05421
AFER243159:0:Tyes605421
AFUL224325:0:Tyes0-----
AHYD196024:0:Tyes605421
ALAI441768:0:Tyes0-----
AMAR234826:0:Tyes---0654-
AMAR329726:9:Tyes-941-0--
AMET293826:0:Tyes046-15049
AORE350688:0:Tyes474-4601
APHA212042:0:Tyes---0398-
APLE416269:0:Tyes-0-15815728
APLE434271:0:Tno0460-622621493
ASAL382245:5:Tyes061245
ASP232721:2:Tyes-0-162164166
ASP62928:0:Tyes-39510134
ASP62977:0:Tyes-3176-023175
ASP76114:2:Tyes-077767473
AVAR240292:3:Tyes-3607-29710-
AYEL322098:4:Tyes0-----
BABO262698:0:Tno---0326325
BABO262698:1:Tno-0----
BAMB339670:3:Tno-0-543
BAMB398577:3:Tno-0-543
BAMY326423:0:Tyes402-3901
BANT260799:0:Tno032--3433
BANT261594:2:Tno031--3332
BANT568206:2:Tyes342--01
BANT592021:2:Tno032--3433
BAPH198804:0:Tyes--0-12
BAPH372461:0:Tyes----0-
BBAC264462:0:Tyes----10
BBAC360095:0:Tyes-0-72111611162
BBRO257310:0:Tyes-184761034
BCAN483179:0:Tno---0423422
BCAN483179:1:Tno-0----
BCEN331271:2:Tno-0-543
BCEN331272:3:Tyes-0-543
BCER226900:1:Tyes032-13433
BCER288681:0:Tno032-13433
BCER315749:1:Tyes032-13433
BCER405917:1:Tyes032-13533
BCER572264:1:Tno032-13433
BCIC186490:0:Tyes----10
BCLA66692:0:Tyes039-1-40
BFRA272559:1:Tyes-----0
BFRA295405:0:Tno-----0
BHAL272558:0:Tyes040-1-41
BHEN283166:0:Tyes-1405-70210
BJAP224911:0:Fyes-0-455675797578
BLIC279010:0:Tyes392-3801
BLON206672:0:Tyes-----0
BMAL243160:1:Tno-5-012
BMAL320388:1:Tno-0-754
BMAL320389:1:Tyes-7-023
BMEL224914:0:Tno---40901
BMEL224914:1:Tno-0----
BMEL359391:0:Tno---0323322
BMEL359391:1:Tno-0----
BOVI236:0:Tyes---0351350
BOVI236:1:Tyes-0----
BPAR257311:0:Tno-193956034
BPER257313:0:Tyes-1010888584
BPET94624:0:Tyes-47230474047394738
BPSE272560:1:Tyes-5-012
BPSE320372:1:Tno-8-023
BPSE320373:1:Tno-5--01
BPUM315750:0:Tyes392-3801
BQUI283165:0:Tyes---51110
BSP107806:2:Tyes--0-12
BSP36773:2:Tyes-0-543
BSP376:0:Tyes39570-3955395396
BSUB:0:Tyes412-4001
BSUI204722:0:Tyes---0408407
BSUI204722:1:Tyes-0----
BSUI470137:0:Tno-655-0400399
BTHA271848:1:Tno-5-012
BTHE226186:0:Tyes---271303600
BTHU281309:1:Tno032-13433
BTHU412694:1:Tno032-13433
BTRI382640:1:Tyes-1952-93410
BVIE269482:7:Tyes-0-543
BWEI315730:4:Tyes032-13433
CABO218497:0:Tyes0-----
CACE272562:1:Tyes623-6101
CAULO:0:Tyes-0-2381171178
CBEI290402:0:Tyes413-4001
CBLO203907:0:Tyes----10
CBLO291272:0:Tno----10
CBOT36826:1:Tno067-17069
CBOT441770:0:Tyes072-17574
CBOT441771:0:Tno071-17473
CBOT441772:1:Tno068-17170
CBOT498213:1:Tno071-17473
CBOT508765:1:Tyes413-4001
CBOT515621:2:Tyes075-17877
CBOT536232:0:Tno073-17675
CBUR227377:1:Tyes9758929749730972
CBUR360115:1:Tno01923128114
CBUR434922:2:Tno18110181018098091807
CCAV227941:1:Tyes0-----
CCHL340177:0:Tyes01049-1380--
CCON360104:2:Tyes1769---0-
CCUR360105:0:Tyes1623---0-
CDES477974:0:Tyes1986-0-987
CDIF272563:1:Tyes11330-013341333
CDIP257309:0:Tyes-0----
CEFF196164:0:Fyes-0----
CFEL264202:1:Tyes0-----
CFET360106:0:Tyes0---1474-
CGLU196627:0:Tyes-0----
CHOM360107:1:Tyes1499---0-
CHUT269798:0:Tyes----0861
CHYD246194:0:Tyes3010-30232
CJAP155077:0:Tyes-0-421
CJEJ192222:0:Tyes0-----
CJEJ195099:0:Tno0-----
CJEJ354242:2:Tyes0-----
CJEJ360109:0:Tyes0-----
CJEJ407148:0:Tno0-----
CKLU431943:1:Tyes463-4501
CMUR243161:1:Tyes0-----
CNOV386415:0:Tyes091-19493
CPEL335992:0:Tyes----0-
CPER195102:1:Tyes039-14241
CPER195103:0:Tno038-14140
CPER289380:3:Tyes038-14140
CPHY357809:0:Tyes231--23210
CPNE115711:1:Tyes0-----
CPNE115713:0:Tno0-----
CPNE138677:0:Tno0-----
CPNE182082:0:Tno0-----
CPRO264201:0:Fyes0--1-341
CPSY167879:0:Tyes605421
CRUT413404:0:Tyes-0774-703530
CSAL290398:0:Tyes-4-023
CSP501479:8:Fyes---8861810
CSP78:2:Tyes-3304-030943092
CTEP194439:0:Tyes0543-199--
CTET212717:0:Tyes383-3701
CTRA471472:0:Tyes0-----
CTRA471473:0:Tno0-----
CVES412965:0:Tyes--209-1460
CVIO243365:0:Tyes706532
DARO159087:0:Tyes-9-023
DDES207559:0:Tyes95--158801
DETH243164:0:Tyes0--135876
DGEO319795:1:Tyes---0--
DHAF138119:0:Tyes0138-1140139
DNOD246195:0:Tyes-50134
DOLE96561:0:Tyes2160-21521
DPSY177439:2:Tyes-0-693645646
DRAD243230:3:Tyes---0--
DRED349161:0:Tyes2723-27301
DSHI398580:5:Tyes-2894-97802
DSP216389:0:Tyes0--142767
DSP255470:0:Tno0--163940
DVUL882:1:Tyes1315--012921291
ECAN269484:0:Tyes---1840-
ECAR218491:0:Tyes051234
ECHA205920:0:Tyes---0--
ECOL199310:0:Tno051234
ECOL316407:0:Tno504321
ECOL331111:6:Tno051234
ECOL362663:0:Tno051234
ECOL364106:1:Tno051234
ECOL405955:2:Tyes051234
ECOL409438:6:Tyes051234
ECOL413997:0:Tno051234
ECOL439855:4:Tno051234
ECOL469008:0:Tno504321
ECOL481805:0:Tno504321
ECOL585034:0:Tno051234
ECOL585035:0:Tno051234
ECOL585055:0:Tno051234
ECOL585056:2:Tno051234
ECOL585057:0:Tno041-23
ECOL585397:0:Tno051234
ECOL83334:0:Tno051234
ECOLI:0:Tno051234
ECOO157:0:Tno051234
EFAE226185:3:Tyes01378-2-1379
EFER585054:1:Tyes051234
ELIT314225:0:Tyes-1873-55630
ERUM254945:0:Tyes---1840-
ERUM302409:0:Tno---1810-
ESP42895:1:Tyes051234
FJOH376686:0:Tyes0-----
FMAG334413:1:Tyes47--1390-
FNOD381764:0:Tyes---0--
FNUC190304:0:Tyes---0-421
FPHI484022:1:Tyes0968-743181453
FRANT:0:Tno0446--71220
FSUC59374:0:Tyes---0-1823
FTUL351581:0:Tno315---01070
FTUL393011:0:Tno289---0987
FTUL393115:0:Tyes0432--69419
FTUL401614:0:Tyes3181227-2330686
FTUL418136:0:Tno6500-7161189286
FTUL458234:0:Tno310---01022
GBET391165:0:Tyes-1063-11410
GKAU235909:1:Tyes402-3901
GMET269799:1:Tyes8270-82632773278
GOXY290633:5:Tyes-327-0566565
GSUL243231:0:Tyes24083226-240901
GTHE420246:1:Tyes402-3901
GURA351605:0:Tyes34810-3482624625
GVIO251221:0:Tyes1453--047170
HACI382638:1:Tyes518---0-
HARS204773:0:Tyes-170134
HAUR316274:2:Tyes0--157-446
HBUT415426:0:Tyes-0----
HCHE349521:0:Tyes-0-421
HDUC233412:0:Tyes01372-127612771401
HHAL349124:0:Tyes-04321
HHEP235279:0:Tyes1250---0-
HINF281310:0:Tyes540-39921
HINF374930:0:Tyes340376-0378377
HINF71421:0:Tno352-36101
HMAR272569:8:Tyes0-----
HMOD498761:0:Tyes79--7801
HMUK485914:1:Tyes0-----
HNEP81032:0:Tyes---160901
HPY:0:Tno0---679-
HPYL357544:1:Tyes0---668-
HPYL85963:0:Tno0---612-
HSAL478009:4:Tyes0-----
HSOM205914:1:Tyes032-4093433
HSOM228400:0:Tno11721205-012071206
HSP64091:2:Tno0-----
HWAL362976:1:Tyes0-----
ILOI283942:0:Tyes504321
JSP290400:1:Tyes-3618-272203
JSP375286:0:Tyes-180134
KPNE272620:2:Tyes051234
KRAD266940:2:Fyes-----0
LACI272621:0:Tyes1--0-318
LBRE387344:2:Tyes1159-0-160
LCAS321967:1:Tyes2223-0--
LCHO395495:0:Tyes-36870134
LDEL321956:0:Tyes0--1-111
LDEL390333:0:Tyes0--1-119
LGAS324831:0:Tyes1531-152-0
LHEL405566:0:Tyes1--0-265
LINN272626:1:Tno1649-0-650
LINT363253:3:Tyes541--0654653
LJOH257314:0:Tyes1380-0-381
LLAC272622:5:Tyes0--1--
LLAC272623:0:Tyes0-----
LMES203120:1:Tyes0749-518--
LMON169963:0:Tno1576-0-577
LMON265669:0:Tyes1553-0-554
LPLA220668:0:Tyes1921-193-0
LPNE272624:0:Tno60-421
LPNE297245:1:Fno60-421
LPNE297246:1:Fyes60-421
LPNE400673:0:Tno06-245
LREU557436:0:Tyes1399-0--
LSAK314315:0:Tyes2981-301-0
LSPH444177:1:Tyes-1-48-0
LWEL386043:0:Tyes1550-0-551
MAEO419665:0:Tyes0-----
MAER449447:0:Tyes-4995-01175-
MAQU351348:2:Tyes24560-421
MCAP243233:0:Tyes061245
MEXT419610:0:Tyes-0-278611061105
MFLA265072:0:Tyes-06532
MGEN243273:0:Tyes0-----
MJAN243232:2:Tyes0-----
MKAN190192:0:Tyes-0----
MLAB410358:0:Tyes-----0
MLOT266835:2:Tyes-2638-032233222
MMAG342108:0:Tyes-0-5349695
MMAR267377:0:Tyes0-----
MMAR394221:0:Tyes-2470-127304
MMAR402880:1:Tyes0-----
MMAR426368:0:Tyes0-----
MMAR444158:0:Tyes0-----
MPEN272633:0:Tyes0-----
MPET420662:1:Tyes-0891112
MPNE272634:0:Tyes0-----
MSP266779:3:Tyes9703040-97210
MSP400668:0:Tyes22080-321
MSP409:2:Tyes-0-133012301229
MSUC221988:0:Tyes902231-022292230
MTHE187420:0:Tyes0-----
MTHE264732:0:Tyes1263-12501
MXAN246197:0:Tyes15422--300
NARO279238:0:Tyes-1328-011231121
NEUR228410:0:Tyes-50134
NEUT335283:2:Tyes-05421
NFAR247156:2:Tyes---0--
NGON242231:0:Tyes061287
NHAM323097:2:Tyes-0-201333763377
NMEN122586:0:Tno827601
NMEN122587:0:Tyes061287
NMEN272831:0:Tno827601
NMEN374833:0:Tno061298
NMUL323848:3:Tyes-0-321
NOCE323261:1:Tyes-50134
NPHA348780:2:Tyes0-----
NSP103690:6:Tyes-0-5082282-
NSP35761:1:Tyes---0--
NSP387092:0:Tyes1516---0-
NWIN323098:0:Tyes-0-187929362937
OANT439375:4:Tyes---0--
OANT439375:5:Tyes-0--263264
OCAR504832:0:Tyes-0-145232033202
OIHE221109:0:Tyes401-39-0
OTSU357244:0:Fyes---0393392
PABY272844:0:Tyes-0----
PAER208963:0:Tyes-0-421
PAER208964:0:Tno-0-421
PARC259536:0:Tyes-2133-213002134
PAST100379:0:Tyes0-----
PATL342610:0:Tyes605421
PCAR338963:0:Tyes170017117243
PCRY335284:1:Tyes-2421-241802422
PENT384676:0:Tyes-0-321
PFLU205922:0:Tyes-0-421
PFLU216595:1:Tyes-0-421
PFLU220664:0:Tyes-0-421
PFUR186497:0:Tyes-0-655--
PHAL326442:1:Tyes605421
PHOR70601:0:Tyes-0----
PING357804:0:Tyes061245
PLUM243265:0:Fyes04-123
PLUT319225:0:Tyes14410-1146--
PMAR146891:0:Tyes-401--0-
PMAR167539:0:Tyes-355--0-
PMAR167540:0:Tyes-369--0-
PMAR167542:0:Tyes-432--0-
PMAR167546:0:Tyes-369--0-
PMAR167555:0:Tyes-361--0-
PMAR59920:0:Tno-337--0-
PMAR74546:0:Tyes-365--0-
PMAR74547:0:Tyes-0----
PMAR93060:0:Tyes-436-12070-
PMEN399739:0:Tyes-0-421
PMOB403833:0:Tyes1581---01
PMUL272843:1:Tyes0292-330290291
PNAP365044:8:Tyes-0254253250249
PPEN278197:0:Tyes1321-137-0
PPRO298386:2:Tyes061245
PPUT160488:0:Tno-0-321
PPUT351746:0:Tyes-0-321
PPUT76869:0:Tno-0-321
PSP117:0:Tyes---0--
PSP296591:2:Tyes-0206205203202
PSP312153:0:Tyes-0-321
PSP56811:2:Tyes-2394-238902395
PSTU379731:0:Tyes-0-421
PSYR205918:0:Tyes-0-421
PSYR223283:2:Tyes-4-023
PTHE370438:0:Tyes1549-0552551
PTOR263820:0:Tyes0-----
RAKA293614:0:Fyes----0-
RALB246199:0:Tyes1434----0
RBEL336407:0:Tyes----01
RBEL391896:0:Fno----0-
RCAN293613:0:Fyes----01
RCAS383372:0:Tyes1494--0-3013
RCON272944:0:Tno----01
RDEN375451:4:Tyes-0-1392637639
RETL347834:5:Tyes-3662-121802
REUT264198:3:Tyes-0-532
REUT381666:2:Tyes-0-532
RFEL315456:2:Tyes---20701
RFER338969:1:Tyes-0273272270269
RLEG216596:6:Tyes-4298-131603
RMAS416276:1:Tyes----0-
RMET266264:2:Tyes-0-532
RPAL258594:0:Tyes31120-3108601602
RPAL316055:0:Tyes-0-3320625624
RPAL316056:0:Tyes-0-2217781784
RPAL316057:0:Tyes-650-298310
RPAL316058:0:Tyes-0-2359598599
RPOM246200:1:Tyes---0141138
RPRO272947:0:Tyes----01
RRIC392021:0:Fno----0-
RRIC452659:0:Tyes----01
RRUB269796:1:Tyes-465-0155156
RSOL267608:1:Tyes-7-024
RSP357808:0:Tyes0--3127-2474
RSPH272943:4:Tyes---017521755
RSPH349101:2:Tno-1933-016971700
RSPH349102:5:Tyes-2753-214703
RTYP257363:0:Tno----0-
RXYL266117:0:Tyes---0--
SACI56780:0:Tyes4250-426-1
SAGA205921:0:Tno6841-685-0
SAGA208435:0:Tno6701-671-0
SAGA211110:0:Tyes7351-736-0
SALA317655:1:Tyes-800-96320
SAUR158878:1:Tno341-33-0
SAUR158879:1:Tno341-33-0
SAUR196620:0:Tno341-33-0
SAUR273036:0:Tno311-30-0
SAUR282458:0:Tno341-33-0
SAUR282459:0:Tno341-33-0
SAUR359786:1:Tno331---0
SAUR359787:1:Tno331---0
SAUR367830:3:Tno341-33-0
SAUR418127:0:Tyes341-33-0
SAUR426430:0:Tno341-33-0
SAUR93061:0:Fno361-35-0
SAUR93062:1:Tno361-35-0
SAVE227882:1:Fyes---0-4321
SBAL399599:3:Tyes605421
SBAL402882:1:Tno605421
SBOY300268:1:Tyes051234
SCO:2:Fyes-----0
SDEG203122:0:Tyes-0-421
SDEN318161:0:Tyes605421
SDYS300267:1:Tyes051234
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