CANDIDATE ID: 141

CANDIDATE ID: 141

NUMBER OF GENES: 6
AVERAGE SCORE:    9.9960373e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.6666667e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6778 (ddpD) (b1484)
   Products of gene:
     - YDDP-MONOMER (YddP)
     - ABC-59-CPLX (YddO/YddP/YddQ/YddR/YddS ABC transporter)

- G6777 (ddpF) (b1483)
   Products of gene:
     - YDDO-MONOMER (YddO)
     - ABC-59-CPLX (YddO/YddP/YddQ/YddR/YddS ABC transporter)

- EG12628 (dppF) (b3540)
   Products of gene:
     - DPPF-MONOMER (DppF)
     - ABC-8-CPLX (dipeptide ABC transporter)
       Reactions:
        ATP + a dipeptide[periplasmic space] + H2O  ->  ADP + phosphate + a dipeptide[cytosol]

- EG12627 (dppD) (b3541)
   Products of gene:
     - DPPD-MONOMER (DppD)
     - ABC-8-CPLX (dipeptide ABC transporter)
       Reactions:
        ATP + a dipeptide[periplasmic space] + H2O  ->  ADP + phosphate + a dipeptide[cytosol]

- EG10678 (oppF) (b1247)
   Products of gene:
     - OPPF-MONOMER (OppF)
     - CPLX0-3970 (murein tripeptide ABC transporter)
       Reactions:
        ATP + L-Ala-D-Glu-meso-A2pm[periplasmic space] + H2O  ->  L-Ala-D-Glu-meso-A2pm[cytosol] + ADP + phosphate
     - ABC-22-CPLX (oligopeptide ABC transporter)
       Reactions:
        ATP + a peptide[periplasmic space] + H2O  ->  ADP + phosphate + a peptide[cytosol]

- EG10677 (oppD) (b1246)
   Products of gene:
     - OPPD-MONOMER (OppD)
     - CPLX0-3970 (murein tripeptide ABC transporter)
       Reactions:
        ATP + L-Ala-D-Glu-meso-A2pm[periplasmic space] + H2O  ->  L-Ala-D-Glu-meso-A2pm[cytosol] + ADP + phosphate
     - ABC-22-CPLX (oligopeptide ABC transporter)
       Reactions:
        ATP + a peptide[periplasmic space] + H2O  ->  ADP + phosphate + a peptide[cytosol]



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ORGANISMS CONTAINING AT LEAST 5 GENES FROM THE GROUP:

Total number of orgs: 180
Effective number of orgs (counting one per cluster within 468 clusters): 124

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
XAUT78245 ncbi Xanthobacter autotrophicus Py25
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106336
VFIS312309 ncbi Vibrio fischeri ES1146
VEIS391735 ncbi Verminephrobacter eiseniae EF01-26
VCHO345073 ncbi Vibrio cholerae O3956
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169616
UMET351160 ncbi uncultured methanogenic archaeon RC-I5
TTHE300852 ncbi Thermus thermophilus HB86
TTHE262724 ncbi Thermus thermophilus HB276
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB46
TSP28240 Thermotoga sp.6
TROS309801 ncbi Thermomicrobium roseum DSM 51596
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332236
TPET390874 ncbi Thermotoga petrophila RKU-16
TMAR243274 ncbi Thermotoga maritima MSB86
TLET416591 ncbi Thermotoga lettingae TMO6
TDEN243275 ncbi Treponema denticola ATCC 354056
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT26
STRO369723 ncbi Salinispora tropica CNB-4406
STHE292459 ncbi Symbiobacterium thermophilum IAM 148636
SSP644076 Silicibacter sp. TrichCH4B6
SSON300269 ncbi Shigella sonnei Ss0466
SPRO399741 ncbi Serratia proteamaculans 5686
SMEL266834 ncbi Sinorhizobium meliloti 10216
SMED366394 ncbi Sinorhizobium medicae WSM4196
SLAC55218 Ruegeria lacuscaerulensis5
SHIGELLA ncbi Shigella flexneri 2a str. 2457T6
SGLO343509 ncbi Sodalis glossinidius morsitans6
SFLE373384 ncbi Shigella flexneri 5 str. 84016
SFLE198214 ncbi Shigella flexneri 2a str. 3016
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23385
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4766
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B676
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91506
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SDYS300267 ncbi Shigella dysenteriae Sd1976
SCO ncbi Streptomyces coelicolor A3(2)6
SBOY300268 ncbi Shigella boydii Sb2276
SAVE227882 ncbi Streptomyces avermitilis MA-46805
SARE391037 ncbi Salinispora arenicola CNS-2056
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99416
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170295
RSP357808 ncbi Roseiflexus sp. RS-16
RSOL267608 ncbi Ralstonia solanacearum GMI10005
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111706
RPAL316056 ncbi Rhodopseudomonas palustris BisB185
RMET266264 ncbi Ralstonia metallidurans CH346
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38416
REUT381666 ncbi Ralstonia eutropha H166
RETL347834 ncbi Rhizobium etli CFN 426
RCAS383372 ncbi Roseiflexus castenholzii DSM 139416
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a6
PSP56811 Psychrobacter sp.6
PSP296591 ncbi Polaromonas sp. JS6665
PSP117 Pirellula sp.5
PPRO298386 ncbi Photobacterium profundum SS96
PMUL272843 ncbi Pasteurella multocida multocida Pm706
PMOB403833 ncbi Petrotoga mobilis SJ956
PLUT319225 ncbi Chlorobium luteolum DSM 2736
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO15
PFLU220664 ncbi Pseudomonas fluorescens Pf-55
PFLU216595 ncbi Pseudomonas fluorescens SBW255
OIHE221109 ncbi Oceanobacillus iheyensis HTE8316
OCAR504832 ncbi Oligotropha carboxidovorans OM55
MXAN246197 ncbi Myxococcus xanthus DK 16226
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-15
MSP400668 ncbi Marinomonas sp. MWYL16
MSP266779 ncbi Chelativorans sp. BNC15
MSME246196 ncbi Mycobacterium smegmatis MC2 1556
MLOT266835 ncbi Mesorhizobium loti MAFF3030996
LSPH444177 ncbi Lysinibacillus sphaericus C3-416
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785786
JSP290400 ncbi Jannaschia sp. CCS16
HMUK485914 ncbi Halomicrobium mukohataei DSM 122866
HMAR272569 ncbi Haloarcula marismortui ATCC 430495
HINF71421 ncbi Haemophilus influenzae Rd KW206
HINF374930 ncbi Haemophilus influenzae PittEE6
HINF281310 ncbi Haemophilus influenzae 86-028NP6
HCHE349521 ncbi Hahella chejuensis KCTC 23966
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237796
GVIO251221 ncbi Gloeobacter violaceus PCC 74216
GURA351605 ncbi Geobacter uraniireducens Rf45
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-26
GMET269799 ncbi Geobacter metallireducens GS-155
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B16
ESP42895 Enterobacter sp.6
EFER585054 ncbi Escherichia fergusonii ATCC 354696
ECOO157 ncbi Escherichia coli O157:H7 EDL9336
ECOL83334 Escherichia coli O157:H76
ECOL585397 ncbi Escherichia coli ED1a6
ECOL585057 ncbi Escherichia coli IAI396
ECOL585056 ncbi Escherichia coli UMN0266
ECOL585055 ncbi Escherichia coli 559896
ECOL585035 ncbi Escherichia coli S886
ECOL585034 ncbi Escherichia coli IAI16
ECOL481805 ncbi Escherichia coli ATCC 87396
ECOL469008 ncbi Escherichia coli BL21(DE3)6
ECOL439855 ncbi Escherichia coli SMS-3-56
ECOL413997 ncbi Escherichia coli B str. REL6066
ECOL409438 ncbi Escherichia coli SE116
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI896
ECOL362663 ncbi Escherichia coli 5366
ECOL331111 ncbi Escherichia coli E24377A6
ECOL316407 ncbi Escherichia coli K-12 substr. W31106
ECOL199310 ncbi Escherichia coli CFT0736
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10436
DRED349161 ncbi Desulfotomaculum reducens MI-16
DRAD243230 ncbi Deinococcus radiodurans R15
DHAF138119 ncbi Desulfitobacterium hafniense Y516
DGEO319795 ncbi Deinococcus geothermalis DSM 113006
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G206
CVIO243365 ncbi Chromobacterium violaceum ATCC 124726
CTEP194439 ncbi Chlorobium tepidum TLS5
CPHY357809 ncbi Clostridium phytofermentans ISDg5
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29016
CDIF272563 ncbi Clostridium difficile 6305
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80525
CACE272562 ncbi Clostridium acetobutylicum ATCC 8246
BWEI315730 ncbi Bacillus weihenstephanensis KBAB46
BVIE269482 ncbi Burkholderia vietnamiensis G45
BTHU412694 ncbi Bacillus thuringiensis Al Hakam6
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-276
BTHA271848 ncbi Burkholderia thailandensis E2645
BSUI470137 ncbi Brucella suis ATCC 234455
BSUI204722 ncbi Brucella suis 13305
BSUB ncbi Bacillus subtilis subtilis 1686
BSP376 Bradyrhizobium sp.6
BSP36773 Burkholderia sp.5
BPUM315750 ncbi Bacillus pumilus SAFR-0326
BPSE320373 ncbi Burkholderia pseudomallei 6685
BPSE320372 ncbi Burkholderia pseudomallei 1710b5
BPSE272560 ncbi Burkholderia pseudomallei K962435
BPET94624 Bordetella petrii6
BPAR257311 ncbi Bordetella parapertussis 128225
BMEL359391 ncbi Brucella melitensis biovar Abortus 23086
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M6
BMAL320389 ncbi Burkholderia mallei NCTC 102475
BMAL320388 ncbi Burkholderia mallei SAVP15
BMAL243160 ncbi Burkholderia mallei ATCC 233445
BLIC279010 ncbi Bacillus licheniformis ATCC 145806
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1106
BHAL272558 ncbi Bacillus halodurans C-1256
BCLA66692 ncbi Bacillus clausii KSM-K166
BCER572264 ncbi Bacillus cereus 03BB1026
BCER405917 Bacillus cereus W6
BCER315749 ncbi Bacillus cytotoxicus NVH 391-986
BCER288681 ncbi Bacillus cereus E33L6
BCER226900 ncbi Bacillus cereus ATCC 145796
BCEN331272 ncbi Burkholderia cenocepacia HI24245
BCEN331271 ncbi Burkholderia cenocepacia AU 10545
BCAN483179 ncbi Brucella canis ATCC 233656
BBRO257310 ncbi Bordetella bronchiseptica RB505
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1005
BANT592021 ncbi Bacillus anthracis A02486
BANT568206 ncbi Bacillus anthracis CDC 6846
BANT261594 ncbi Bacillus anthracis Ames Ancestor6
BANT260799 ncbi Bacillus anthracis Sterne6
BAMY326423 ncbi Bacillus amyloliquefaciens FZB426
BAMB398577 ncbi Burkholderia ambifaria MC40-65
BAMB339670 ncbi Burkholderia ambifaria AMMD5
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9416
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4496
AORE350688 ncbi Alkaliphilus oremlandii OhILAs6
AMET293826 ncbi Alkaliphilus metalliredigens QYMF6
AHYD196024 Aeromonas hydrophila dhakensis6
ACAU438753 ncbi Azorhizobium caulinodans ORS 5716
ABAU360910 ncbi Bordetella avium 197N6


Names of the homologs of the genes in the group in each of these orgs
  G6778   G6777   EG12628   EG12627   EG10678   EG10677   
YPSE349747 YPSIP31758_1957YPSIP31758_4071YPSIP31758_4072YPSIP31758_1956YPSIP31758_1957
YPSE273123 YPTB2108YPTB3838YPTB3839YPTB2109YPTB2108
YPES386656 YPDSF_0951YPDSF_3365YPDSF_3366YPDSF_0950YPDSF_0951
YPES377628 YPN_1651YPN_3648YPN_3649YPN_1652YPN_1651
YPES360102 YPA_1542YPA_3826YPA_3827YPA_1543YPA_1542
YPES349746 YPANGOLA_A2160YPANGOLA_A4060YPANGOLA_A4059YPANGOLA_A2159YPANGOLA_A2160
YPES214092 YPO2185YPO3999YPO4000YPO2186YPO2185
YPES187410 Y2029Y3830Y3829Y2030Y2029
YENT393305 YE2230YE4079YE4080YE2229YE2230
XAUT78245 XAUT_2764XAUT_2765XAUT_2765XAUT_2764XAUT_2764
VVUL216895 VV1_3079VV1_3078VV1_3078VV1_3079VV1_3078VV1_3079
VVUL196600 VV1206VV1207VV1207VV1206VV1207VV1206
VPAR223926 VP2088VP1343VP1343VP1344VP2087VP2088
VFIS312309 VF1594VF0692VF1593VF0691VF1593VF1594
VEIS391735 VEIS_4118VEIS_4117VEIS_4962VEIS_1298VEIS_4962VEIS_4963
VCHO345073 VC0395_A0612VC0395_A0613VC0395_A0613VC0395_A0612VC0395_A0613VC0395_A0612
VCHO VC1094VC1095VC1095VC1094VC1095VC1094
UMET351160 LRC380LRC381LRC381LRC381LRC380
TTHE300852 TTHA0472TTHA0473TTHA0473TTHA0472TTHA0473TTHA0472
TTHE262724 TT_C0101TT_C0102TT_C0102TT_C0101TT_C0102TT_C0101
TTEN273068 TTE2525TTE2526TTE2526TTE2525TTE0615TTE0614
TSP28240 TRQ2_0434TRQ2_0889TRQ2_1075TRQ2_0434TRQ2_1075TRQ2_0437
TROS309801 TRD_1629TRD_1630TRD_1630TRD_1629TRD_1630TRD_1629
TPSE340099 TETH39_0199TETH39_0198TETH39_0198TETH39_0199TETH39_1685TETH39_1686
TPET390874 TPET_0419TPET_0867TPET_0867TPET_0419TPET_0420TPET_0422
TMAR243274 TM_0501TM_1063TM_1750TM_0501TM_1750TM_0498
TLET416591 TLET_0199TLET_0644TLET_0644TLET_0648TLET_1527TLET_0645
TDEN243275 TDE_1068TDE_1271TDE_1271TDE_1272TDE_1271TDE_1068
STYP99287 STM1743STM3626STM3626STM3627STM1742STM1743
STRO369723 STROP_3820STROP_3819STROP_3819STROP_0219STROP_3819STROP_3820
STHE292459 STH2824STH2823STH1111STH2824STH2823STH2824
SSP644076 SCH4B_3701SCH4B_2892SCH4B_3702SCH4B_0504SCH4B_3702SCH4B_3701
SSON300269 SSO_1640SSO_1641SSO_3850SSO_3849SSO_1933SSO_1934
SPRO399741 SPRO_2350SPRO_2351SPRO_0142SPRO_0141SPRO_2697SPRO_2698
SMEL266834 SMC02423SMC02424SMC00790SMA1371SMA2079SMC03125
SMED366394 SMED_5789SMED_5788SMED_0333SMED_5064SMED_5658SMED_2856
SLAC55218 SL1157_0093SL1157_0093SL1157_0094SL1157_A0137SL1157_A0137
SHIGELLA S1874OPPFDPPFDPPDOPPFOPPD
SGLO343509 SG1376SG1377SG0064SG0063SG1377SG1376
SFLE373384 SFV_1737SFV_1738SFV_3547SFV_3546SFV_1259SFV_1258
SFLE198214 AAN43313.1AAN43314.1AAN45026.1AAN45027.1AAN42861.1AAN42860.1
SERY405948 SACE_0848SACE_0848SACE_0847SACE_0848SACE_0260
SENT454169 SEHA_C1934SEHA_C3946SEHA_C3946SEHA_C3947SEHA_C1933SEHA_C1934
SENT321314 SCH_1739SCH_3557SCH_3557SCH_3558SCH_1738SCH_1739
SENT295319 SPA1134SPA3483SPA3483SPA3484SPA1135SPA1134
SENT220341 STY1308STY4172STY4172STY4171STY1309STY1308
SENT209261 T1655T3889T3889T3888T1654T1655
SDYS300267 SDY_1304SDY_1611SDY_4563SDY_4564SDY_1305SDY_1304
SCO SCO5120SCO5480SCO5121SCO5120SCO5121SCO5120
SBOY300268 SBO_1573SBO_1574SBO_3539SBO_3540SBO_1820SBO_1821
SAVE227882 SAV2765SAV2765SAV3146SAV3145SAV3146
SARE391037 SARE_4781SARE_4209SARE_4209SARE_0258SARE_4209SARE_4210
RXYL266117 RXYL_0869RXYL_0876RXYL_0876RXYL_0875RXYL_0876RXYL_0875
RSPH349101 RSPH17029_4157RSPH17029_4158RSPH17029_3973RSPH17029_4157RSPH17029_4158
RSP357808 ROSERS_0418ROSERS_2812ROSERS_0419ROSERS_0416ROSERS_0419ROSERS_0418
RSOL267608 RSC2867RSC2866RSC1884RSC1885RSC1884
RRUB269796 RRU_A0589RRU_A2174RRU_A2360RRU_A2359RRU_A0588RRU_A0589
RPAL316056 RPC_1212RPC_2968RPC_2969RPC_2968RPC_2969
RMET266264 RMET_5091RMET_4580RMET_4580RMET_5091RMET_4580RMET_4579
RLEG216596 PRL120430PRL100280RL0782RL0781RL3547RL3546
REUT381666 H16_B1125H16_A1304H16_B0716H16_B1125H16_B0716H16_A1303
RETL347834 RHE_CH00605RHE_CH00740RHE_CH00740RHE_CH00739RHE_CH03100RHE_CH03099
RCAS383372 RCAS_1063RCAS_2420RCAS_1064RCAS_1061RCAS_1064RCAS_1063
PSYR205918 PSYR_4213PSYR_2263PSYR_4242PSYR_4241PSYR_2677PSYR_2540
PSP56811 PSYCPRWF_0024PSYCPRWF_1530PSYCPRWF_1530PSYCPRWF_1529PSYCPRWF_0025PSYCPRWF_0024
PSP296591 BPRO_4338BPRO_4337BPRO_2815BPRO_2814BPRO_0660
PSP117 RB12858RB12858RB12859RB12858RB12859
PPRO298386 PBPRA1134PBPRA1135PBPRA2934PBPRA2935PBPRA1135PBPRA1134
PMUL272843 PM1907PM0240PM0240PM0239PM1906PM1907
PMOB403833 PMOB_1578PMOB_1325PMOB_1579PMOB_1578PMOB_1579PMOB_1578
PLUT319225 PLUT_0631PLUT_1632PLUT_1632PLUT_0631PLUT_1632PLUT_0631
PLUM243265 PLU2490PLU0304PLU0303PLU2489PLU2490
PFLU220664 PFL_4027PFL_4028PFL_0874PFL_0875PFL_0874
PFLU216595 PFLU1634PFLU0819PFLU0819PFLU0820PFLU0819
OIHE221109 OB2453OB3070OB2452OB3069OB2963OB2968
OCAR504832 OCAR_7512OCAR_7522OCAR_7522OCAR_7522OCAR_7522
MXAN246197 MXAN_4665MXAN_4664MXAN_4664MXAN_4665MXAN_4664MXAN_4665
MVAN350058 MVAN_0434MVAN_0434MVAN_1021MVAN_0434MVAN_0435
MSP400668 MMWYL1_3821MMWYL1_1682MMWYL1_0110MMWYL1_0111MMWYL1_4408MMWYL1_4407
MSP266779 MESO_3727MESO_3136MESO_0063MESO_0064MESO_3135
MSME246196 MSMEG_0640MSMEG_0639MSMEG_0639MSMEG_0640MSMEG_0639MSMEG_0640
MLOT266835 MLR6674MLR6675MLR5420MLR5419MLL0595MLL0596
LSPH444177 BSPH_4261BSPH_4236BSPH_2217BSPH_4235BSPH_2217BSPH_4261
KPNE272620 GKPORF_B1131GKPORF_B1329GKPORF_B3248GKPORF_B3249GKPORF_B1329GKPORF_B1330
JSP290400 JANN_4131JANN_3293JANN_4132JANN_4131JANN_3054JANN_3053
HMUK485914 HMUK_0538HMUK_0537HMUK_0537HMUK_0538HMUK_0218HMUK_0538
HMAR272569 RRNAC3295RRNAC2043RRNAC2042RRNAC2227RRNAC2042
HINF71421 HI_1121HI_1184HI_1184HI_1185HI_1120HI_1121
HINF374930 CGSHIEE_06440CGSHIEE_06130CGSHIEE_06130CGSHIEE_06125CGSHIEE_06445CGSHIEE_06440
HINF281310 NTHI1287NTHI1353NTHI1353NTHI1354NTHI1286NTHI1287
HCHE349521 HCH_00011HCH_01830HCH_00699HCH_01831HCH_00699HCH_01130
HAUR316274 HAUR_1226HAUR_1227HAUR_3497HAUR_3498HAUR_1227HAUR_1226
GVIO251221 GLL4123GLL4122GLL4122GLL4123GLL4122GLL4123
GURA351605 GURA_1711GURA_1711GURA_1712GURA_1711GURA_1712
GTHE420246 GTNG_0476GTNG_0477GTNG_3281GTNG_3282GTNG_0477GTNG_3282
GMET269799 GMET_0847GMET_0847GMET_0848GMET_0847GMET_0848
FNOD381764 FNOD_0193FNOD_1565FNOD_1565FNOD_0193FNOD_0192FNOD_0193
ESP42895 ENT638_2299ENT638_0752ENT638_0188ENT638_0187ENT638_2298ENT638_2299
EFER585054 EFER_1709EFER_1708EFER_3537EFER_3538EFER_1708EFER_1709
ECOO157 Z2226Z2227DPPFDPPDOPPFOPPD
ECOL83334 ECS2088ECS2087ECS4420ECS4421ECS1747ECS1746
ECOL585397 ECED1_1398ECED1_1399ECED1_4219ECED1_4220ECED1_1399ECED1_1398
ECOL585057 ECIAI39_1748ECIAI39_1747ECIAI39_4049ECIAI39_4050ECIAI39_1582ECIAI39_1581
ECOL585056 ECUMN_1738ECUMN_1737ECUMN_4050ECUMN_4051ECUMN_1544ECUMN_1543
ECOL585055 EC55989_1616EC55989_1615EC55989_3991EC55989_3992EC55989_1344EC55989_1343
ECOL585035 ECS88_1314ECS88_1315ECS88_3960ECS88_3961ECS88_1315ECS88_1314
ECOL585034 ECIAI1_1494ECIAI1_1493ECIAI1_3698ECIAI1_3699ECIAI1_1266ECIAI1_1265
ECOL481805 ECOLC_2173ECOLC_2174ECOLC_0175ECOLC_0174ECOLC_2381ECOLC_2382
ECOL469008 ECBD_2155ECBD_2156ECBD_0196ECBD_0195ECBD_2375ECBD_2376
ECOL439855 ECSMS35_1689ECSMS35_1690ECSMS35_3859ECSMS35_3860ECSMS35_1893ECSMS35_1894
ECOL413997 ECB_01442ECB_01441ECB_03391ECB_03392ECB_01221ECB_01220
ECOL409438 ECSE_1574ECSE_1573ECSE_3813ECSE_3814ECSE_1295ECSE_1294
ECOL405955 APECO1_361APECO1_362APECO1_2908APECO1_2907APECO1_362APECO1_361
ECOL364106 UTI89_C1444UTI89_C1445UTI89_C4078UTI89_C4079UTI89_C1445UTI89_C1444
ECOL362663 ECP_1293ECP_1294ECP_3641ECP_3642ECP_1294ECP_1293
ECOL331111 ECE24377A_1673ECE24377A_1672ECE24377A_4032ECE24377A_4033ECE24377A_1395ECE24377A_1394
ECOL316407 ECK1478:JW1479:B1484ECK1477:JW1478:B1483ECK3527:JW3509:B3540ECK3528:JW3510:B3541ECK1241:JW1239:B1247ECK1240:JW1238:B1246
ECOL199310 C1710C1711C4355C4356C1711C1710
ECAR218491 ECA2321ECA2320ECA4390ECA4391ECA2320ECA2321
DRED349161 DRED_2451DRED_0393DRED_2450DRED_2451DRED_2450DRED_2451
DRAD243230 DR_1568DR_1567DR_1568DR_1567DR_1568
DHAF138119 DSY0646DSY0647DSY0506DSY0505DSY0506DSY1863
DGEO319795 DGEO_1341DGEO_1340DGEO_1340DGEO_1341DGEO_1340DGEO_1341
DDES207559 DDE_1182DDE_1181DDE_1181DDE_1182DDE_1181DDE_1182
CVIO243365 CV_4326CV_1101CV_1101CV_1100CV_4325CV_4326
CTEP194439 CT_0655CT_1645CT_0655CT_1645CT_0655
CPHY357809 CPHY_1999CPHY_0816CPHY_1998CPHY_0809CPHY_1998
CHYD246194 CHY_1126CHY_1127CHY_1127CHY_1126CHY_1127CHY_1126
CDIF272563 CD2671CD2670CD2671CD2670CD2671
CBEI290402 CBEI_4930CBEI_4929CBEI_4930CBEI_4929CBEI_4930
CACE272562 CAC3636CAC3635CAC3635CAC0179CAC3635CAC3636
BWEI315730 BCERKBAB4_0806BCERKBAB4_0807BCERKBAB4_0212BCERKBAB4_1092BCERKBAB4_0807BCERKBAB4_1092
BVIE269482 BCEP1808_3126BCEP1808_3126BCEP1808_3127BCEP1808_3702BCEP1808_3703
BTHU412694 BALH_0819BALH_0820BALH_0223BALH_1045BALH_0223BALH_1045
BTHU281309 BT9727_4234BT9727_0826BT9727_4235BT9727_4234BT9727_4235BT9727_1086
BTHA271848 BTH_I0224BTH_I0224BTH_I0223BTH_II2215BTH_II2216
BSUI470137 BSUIS_B0408BSUIS_A1638BSUIS_B1089BSUIS_B0407BSUIS_B1075
BSUI204722 BR_A0405BR_1582BR_A1094BR_A0404BR_A1079
BSUB BSU12950BSU11370BSU11370BSU11360BSU13000BSU12950
BSP376 BRADO0909BRADO3023BRADO1739BRADO1740BRADO1097BRADO3022
BSP36773 BCEP18194_A6388BCEP18194_A6388BCEP18194_A6389BCEP18194_B0119BCEP18194_B0118
BPUM315750 BPUM_1187BPUM_1061BPUM_1061BPUM_1060BPUM_1192BPUM_1187
BPSE320373 BURPS668_0247BURPS668_0247BURPS668_0246BURPS668_A3015BURPS668_A3016
BPSE320372 BURPS1710B_A0465BURPS1710B_A0465BURPS1710B_A0464BURPS1710B_B1480BURPS1710B_B1481
BPSE272560 BPSL0253BPSL0253BPSL0252BPSS2137BPSS2138
BPET94624 BPET2409BPET0286BPET0286BPET0285BPET0286BPET5005
BPAR257311 BPP3590BPP3589BPP3589BPP4126BPP4413
BMEL359391 BAB2_0817BAB2_1037BAB1_1596BAB2_1052BAB2_1037BAB2_1038
BMEL224914 BMEII0863BMEII0223BMEI0438BMEII0206BMEII0864BMEII0222
BMAL320389 BMA10247_3374BMA10247_3374BMA10247_3375BMA10247_A0389BMA10247_A0388
BMAL320388 BMASAVP1_A2973BMASAVP1_A2973BMASAVP1_A2972BMASAVP1_1538BMASAVP1_1537
BMAL243160 BMA_3305BMA_3305BMA_3304BMA_A0354.1BMA_A0354
BLIC279010 BL03769BL03317BL03317BL03044BL03763BL03769
BJAP224911 BLL7916BLL4892BLR1357BLR3344BLR1357BLL0990
BHAL272558 BH3646BH3645BH3645BH0350BH0351BH0028
BCLA66692 ABC1238ABC2415ABC0568ABC3658ABC3657ABC0567
BCER572264 BCA_0958BCA_0959BCA_0273BCA_1226BCA_0273BCA_1226
BCER405917 BCE_1003BCE_1004BCE_0252BCE_1303BCE_0252BCE_1303
BCER315749 BCER98_0222BCER98_0223BCER98_0223BCER98_0899BCER98_0223BCER98_0899
BCER288681 BCE33L0810BCE33L0811BCE33L4247BCE33L4246BCE33L4247BCE33L1080
BCER226900 BC_0910BC_0911BC_0245BC_0910BC_0245BC_1182
BCEN331272 BCEN2424_3041BCEN2424_3041BCEN2424_3042BCEN2424_5538BCEN2424_5539
BCEN331271 BCEN_2427BCEN_2427BCEN_2428BCEN_5322BCEN_5321
BCAN483179 BCAN_B0408BCAN_B1101BCAN_A1617BCAN_B1116BCAN_B0407BCAN_B1102
BBRO257310 BB4025BB4024BB4024BB4596BB5001
BBAC264462 BD2190BD2190BD2189BD2190BD2189
BANT592021 BAA_0261BAA_1016BAA_4750BAA_4749BAA_4750BAA_1270
BANT568206 BAMEG_0260BAMEG_3649BAMEG_4769BAMEG_4768BAMEG_4769BAMEG_3394
BANT261594 GBAA0234GBAA0912GBAA4734GBAA4733GBAA4734GBAA1194
BANT260799 BAS0221BAS0863BAS4394BAS4393BAS4394BAS1104
BAMY326423 RBAM_011460RBAM_011370RBAM_011370RBAM_011360RBAM_011370RBAM_012800
BAMB398577 BAMMC406_2952BAMMC406_2952BAMMC406_2953BAMMC406_5409BAMMC406_5410
BAMB339670 BAMB_3086BAMB_3086BAMB_3087BAMB_4862BAMB_4863
BABO262698 BRUAB2_0796BRUAB2_1018BRUAB1_1569BRUAB2_1033BRUAB2_1018BRUAB2_1019
ASAL382245 ASA_1701ASA_0885ASA_1702ASA_0884ASA_1702ASA_1701
AORE350688 CLOS_1344CLOS_1345CLOS_1345CLOS_1344CLOS_1345CLOS_1344
AMET293826 AMET_2912AMET_2911AMET_2905AMET_2064AMET_2065AMET_2912
AHYD196024 AHA_2610AHA_3428AHA_2609AHA_3429AHA_2609AHA_2610
ACAU438753 AZC_2908AZC_2907AZC_2011AZC_2012AZC_2011AZC_1983
ABAU360910 BAV2801BAV0997BAV2800BAV0998BAV0997BAV1561


Organism features enriched in list (features available for 168 out of the 180 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.002547944112
Disease:Anthrax 0.006720844
Disease:Brucellosis 0.001903755
Disease:Bubonic_plague 0.000536866
Disease:Dysentery 0.000536866
Disease:Gastroenteritis 0.00035211013
Endospores:No 2.517e-735211
Endospores:Yes 8.242e-83353
GC_Content_Range4:0-40 1.250e-1029213
GC_Content_Range4:40-60 0.000369882224
GC_Content_Range4:60-100 0.000554657145
GC_Content_Range7:0-30 0.0000115247
GC_Content_Range7:30-40 6.476e-627166
GC_Content_Range7:50-60 2.257e-651107
GC_Content_Range7:60-70 0.000762453134
Genome_Size_Range5:0-2 3.424e-196155
Genome_Size_Range5:2-4 3.096e-634197
Genome_Size_Range5:4-6 6.977e-1999184
Genome_Size_Range5:6-10 7.636e-72947
Genome_Size_Range9:1-2 2.413e-146128
Genome_Size_Range9:2-3 3.138e-812120
Genome_Size_Range9:4-5 2.649e-74996
Genome_Size_Range9:5-6 1.421e-95088
Genome_Size_Range9:6-8 0.00001932338
Gram_Stain:Gram_Neg 0.0002681114333
Habitat:Host-associated 0.001664945206
Habitat:Terrestrial 0.00008611931
Motility:No 4.700e-819151
Motility:Yes 3.265e-7104267
Oxygen_Req:Anaerobic 0.003808719102
Oxygen_Req:Facultative 0.000011480201
Shape:Branched_filament 0.006720844
Shape:Coccus 6.173e-9482
Shape:Rod 3.823e-14139347
Shape:Spiral 0.0006843234



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 333
Effective number of orgs (counting one per cluster within 468 clusters): 265

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS11
TTUR377629 ncbi Teredinibacter turnerae T79010
TPEN368408 ncbi Thermofilum pendens Hrk 51
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TFUS269800 ncbi Thermobifida fusca YX1
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP94122 ncbi Shewanella sp. ANA-30
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSED425104 ncbi Shewanella sediminis HAW-EB30
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SPEA398579 ncbi Shewanella pealeana ATCC 7003450
SONE211586 ncbi Shewanella oneidensis MR-10
SMUT210007 ncbi Streptococcus mutans UA1591
SLOI323850 ncbi Shewanella loihica PV-40
SHAL458817 ncbi Shewanella halifaxensis HAW-EB40
SGOR29390 Streptococcus gordonii Challis0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2170
SDEG203122 ncbi Saccharophagus degradans 2-400
SBAL402882 ncbi Shewanella baltica OS1850
SBAL399599 ncbi Shewanella baltica OS1950
SAUR273036 ncbi Staphylococcus aureus RF1221
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSTU379731 ncbi Pseudomonas stutzeri A15010
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PNAP365044 ncbi Polaromonas naphthalenivorans CJ20
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PING357804 ncbi Psychromonas ingrahamii 370
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101521
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197181
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS101
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MEXT419610 ncbi Methylobacterium extorquens PA11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby1
LPNE297246 ncbi Legionella pneumophila Paris1
LPNE297245 ncbi Legionella pneumophila Lens1
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 11
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LCHO395495 ncbi Leptothrix cholodnii SP-60
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM1
JSP375286 ncbi Janthinobacterium sp. Marseille1
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HARS204773 ncbi Herminiimonas arsenicoxydans1
HACI382638 ncbi Helicobacter acinonychis Sheeba1
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-001
FTUL418136 ncbi Francisella tularensis tularensis WY96-34181
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2001
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP106370 ncbi Frankia sp. CcI30
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250171
FMAG334413 ncbi Finegoldia magna ATCC 293281
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5831
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSHI398580 ncbi Dinoroseobacter shibae DFL 121
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CSAL290398 ncbi Chromohalobacter salexigens DSM 30431
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKLU431943 ncbi Clostridium kluyveri DSM 5551
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB150
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPER257313 ncbi Bordetella pertussis Tohama I1
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP62928 ncbi Azoarcus sp. BH721
APHA212042 ncbi Anaplasma phagocytophilum HZ0
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232701
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACRY349163 ncbi Acidiphilium cryptum JF-50
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3451
AAUR290340 ncbi Arthrobacter aurescens TC11
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G6778   G6777   EG12628   EG12627   EG10678   EG10677   
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
WSUC273121
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TVOL273116 TVN1328
TTUR377629
TPEN368408 TPEN_1249
TPAL243276
TKOD69014 TK1801
TFUS269800 TFU_1630
TERY203124
TELO197221
TDEN326298
TCRU317025
TACI273075
SWOL335541
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP94122
SSP84588
SSP64471
SSP321332
SSP321327
SSP1148
SSP1131
SSOL273057
SSED425104
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SPEA398579
SONE211586
SMUT210007 SMU_258
SLOI323850
SHAL458817
SGOR29390
SELO269084
SDEN318161
SDEG203122
SBAL402882
SBAL399599
SAUR273036 SAB0854
SALA317655
SAGA211110 GBS0147
SAGA208435 SAG_0151
SAGA205921 SAK_0209
SACI330779
RTYP257363
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RPAL316055
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PTHE370438
PSTU379731
PSP312153
PRUM264731
PPEN278197 PEPE_0399
PNAP365044
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PISL384616
PINT246198
PING357804
PHAL326442
PGIN242619
PDIS435591
PATL342610
PAST100379
PARS340102 PARS_0962
PARC259536
PAER178306
OTSU357244
NWIN323098
NSP387092
NSP103690
NSEN222891
NPHA348780 NP0766A
NOCE323261
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NFAR247156 NFA1670
NEUT335283
NEUR228410 NE2480
NARO279238
MTUB419947
MTUB336982
MTHE349307
MTHE264732
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP189918
MSP164757
MSP164756
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221 MMAR10_2606
MMAR368407
MMAR267377
MMAG342108
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MFLA265072
MEXT419610 MEXT_1280
MCAP340047
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAER449447
MAEO419665
MABS561007
LXYL281090
LSAK314315 LSA0705
LREU557436
LPNE400673 LPC_2602
LPNE297246 LPP0747
LPNE297245 LPL0728
LPNE272624 LPG0692
LPLA220668 LP_1264
LMES203120
LLAC272623 L148976
LLAC272622 LACR_0393
LJOH257314
LINT363253 LI0988
LINT267671
LINT189518
LGAS324831
LDEL390333 LDB0284
LDEL321956 LBUL_0238
LCHO395495
LCAS321967 LSEI_2062
LBRE387344 LVIS_1766
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621 LBA0202
JSP375286 MMA_3519
ILOI283942
IHOS453591
HSOM228400
HSOM205914
HPYL85963 JHP0287
HPYL357544 HPAG1_0304
HPY HP0302
HMOD498761
HHEP235279
HHAL349124
HBUT415426
HARS204773 HEAR3291
HACI382638 HAC_0563
GFOR411154
GBET391165
FTUL458234 FTA_1745
FTUL418136 FTW_0213
FTUL393011
FTUL351581 FTL_1648
FSUC59374
FSP106370
FPHI484022 FPHI_1029
FMAG334413 FMG_1247
FJOH376686
ERUM302409
ERUM254945
ELIT314225
EFAE226185 EF_0911
ECHA205920
ECAN269484
DSHI398580 DSHI_0884
DNOD246195
DETH243164
CVES412965
CTRA471473
CTRA471472
CTET212717
CSUL444179
CSP78
CSAL290398 CSAL_1869
CRUT413404
CPSY167879
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPEL335992
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKLU431943 CKL_1314
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CJAP155077
CHUT269798
CHOM360107
CGLU196627
CFET360106
CFEL264202
CEFF196164
CDIP257309
CCUR360105
CCON360104
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBLO291272
CBLO203907
CAULO
CABO218497
BTUR314724
BTRI382640
BTHE226186
BSP107806
BQUI283165
BPER257313 BP3859
BLON206672
BHER314723
BHEN283166
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BBUR224326
BBAC360095
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AVAR240292
AURANTIMONAS
ASP62977
ASP62928 AZO2061
APHA212042
AMAR329726
AMAR234826
ALAI441768
AFUL224325 AF_1770
AFER243159 AFE_0121
AEHR187272
ADEH290397
ACRY349163
ABUT367737
ABOR393595
ABAC204669 ACID345_0091
AAUR290340 AAUR_3876
AAEO224324


Organism features enriched in list (features available for 316 out of the 333 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.0000276117
Arrangment:Pairs 3.053e-737112
Disease:Pharyngitis 0.007150088
Disease:Wide_range_of_infections 0.00109391111
Disease:bronchitis_and_pneumonitis 0.007150088
Endospores:No 7.314e-6139211
Endospores:Yes 9.254e-11753
GC_Content_Range4:0-40 2.010e-8147213
GC_Content_Range4:60-100 6.267e-656145
GC_Content_Range7:0-30 0.00857203347
GC_Content_Range7:30-40 3.548e-6114166
GC_Content_Range7:50-60 0.000113041107
GC_Content_Range7:60-70 8.747e-651134
Genome_Size_Range5:0-2 9.631e-26137155
Genome_Size_Range5:4-6 4.438e-1458184
Genome_Size_Range5:6-10 4.609e-8847
Genome_Size_Range9:0-1 3.869e-82727
Genome_Size_Range9:1-2 1.297e-17110128
Genome_Size_Range9:4-5 4.049e-82896
Genome_Size_Range9:5-6 0.00002023088
Genome_Size_Range9:6-8 2.784e-6738
Genome_Size_Range9:8-10 0.009036019
Habitat:Host-associated 7.505e-7139206
Habitat:Multiple 0.000019674178
Habitat:Terrestrial 0.0000417631
Motility:No 0.000669798151
Motility:Yes 2.129e-8112267
Optimal_temp.:30-37 0.0000130118
Oxygen_Req:Aerobic 0.0079620112185
Oxygen_Req:Facultative 0.000022686201
Oxygen_Req:Microaerophilic 0.00738191518
Shape:Coccus 0.00099055782
Shape:Rod 1.038e-13145347
Shape:Sphere 0.00011651819
Shape:Spiral 1.898e-73234



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 5
Effective number of orgs (counting one per cluster within 468 clusters): 5

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
HMUK485914 ncbi Halomicrobium mukohataei DSM 12286 0.00111025576
TDEN243275 ncbi Treponema denticola ATCC 35405 0.00163585946
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B1 0.00292076546
TLET416591 ncbi Thermotoga lettingae TMO 0.00975267996
PMOB403833 ncbi Petrotoga mobilis SJ95 0.00990058016


Names of the homologs of the genes in the group in each of these orgs
  G6778   G6777   EG12628   EG12627   EG10678   EG10677   
HMUK485914 HMUK_0538HMUK_0537HMUK_0537HMUK_0538HMUK_0218HMUK_0538
TDEN243275 TDE_1068TDE_1271TDE_1271TDE_1272TDE_1271TDE_1068
FNOD381764 FNOD_0193FNOD_1565FNOD_1565FNOD_0193FNOD_0192FNOD_0193
TLET416591 TLET_0199TLET_0644TLET_0644TLET_0648TLET_1527TLET_0645
PMOB403833 PMOB_1578PMOB_1325PMOB_1579PMOB_1578PMOB_1579PMOB_1578


Organism features enriched in list (features available for 5 out of the 5 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:gum_inflamation 0.008576311
Habitat:Specialized 0.0002813453
Oxygen_Req:Anaerobic 0.00370514102



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GALACTITOLCAT-PWY (galactitol degradation)73650.4835
PWY-6196 (serine racemization)102780.4644
PWY-6374 (vibriobactin biosynthesis)77650.4600
XYLCAT-PWY (xylose degradation I)2171190.4185
PWY0-823 (arginine degradation III (arginine decarboxylase/agmatinase pathway))2451280.4148
GLUTAMINDEG-PWY (glutamine degradation I)1911090.4133
GLUCARDEG-PWY (D-glucarate degradation I)152940.4130
PWY-561 (superpathway of glyoxylate cycle)162970.4052



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6777   EG12628   EG12627   EG10678   EG10677   
G67780.9996040.9993950.9993830.999640.999742
G67770.9996620.9996860.9995680.999503
EG126280.9998440.9996810.999514
EG126270.9995070.999484
EG106780.999843
EG10677



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PAIRWISE BLAST SCORES:

  G6778   G6777   EG12628   EG12627   EG10678   EG10677   
G67780.0f0--1.3e-64-9.6e-69
G6777-0.0f06.2e-58-1.6e-59-
EG12628--0.0f0-1.3e-78-
EG12627---0.0f0-3.3e-59
EG10678--2.3e-76-0.0f0-
EG10677-----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- CPLX0-3970 (murein tripeptide ABC transporter) (degree of match pw to cand: 0.400, degree of match cand to pw: 0.333, average score: 1.000)
  Genes in pathway or complex:
             0.9932 0.9696 G6665 (mppA) G6665-MONOMER (periplasmic murein tripeptide binding protein)
   *in cand* 0.9997 0.9995 EG10678 (oppF) OPPF-MONOMER (OppF)
   *in cand* 0.9997 0.9995 EG10677 (oppD) OPPD-MONOMER (OppD)
             0.9982 0.9946 EG10676 (oppC) OPPC-MONOMER (OppC)
             0.9986 0.9962 EG10675 (oppB) OPPB-MONOMER (OppB)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9994 EG12627 (dppD) DPPD-MONOMER (DppD)
   *in cand* 0.9997 0.9994 EG12628 (dppF) DPPF-MONOMER (DppF)
   *in cand* 0.9997 0.9995 G6777 (ddpF) YDDO-MONOMER (YddO)
   *in cand* 0.9996 0.9994 G6778 (ddpD) YDDP-MONOMER (YddP)

- ABC-22-CPLX (oligopeptide ABC transporter) (degree of match pw to cand: 0.400, degree of match cand to pw: 0.333, average score: 1.000)
  Genes in pathway or complex:
             0.9941 0.9753 EG10674 (oppA) OPPA-MONOMER (OppA-oligopeptide ABC transporter substrate-binding)
             0.9986 0.9962 EG10675 (oppB) OPPB-MONOMER (OppB)
   *in cand* 0.9997 0.9995 EG10678 (oppF) OPPF-MONOMER (OppF)
   *in cand* 0.9997 0.9995 EG10677 (oppD) OPPD-MONOMER (OppD)
             0.9982 0.9946 EG10676 (oppC) OPPC-MONOMER (OppC)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9994 EG12627 (dppD) DPPD-MONOMER (DppD)
   *in cand* 0.9997 0.9994 EG12628 (dppF) DPPF-MONOMER (DppF)
   *in cand* 0.9997 0.9995 G6777 (ddpF) YDDO-MONOMER (YddO)
   *in cand* 0.9996 0.9994 G6778 (ddpD) YDDP-MONOMER (YddP)

- ABC-8-CPLX (dipeptide ABC transporter) (degree of match pw to cand: 0.400, degree of match cand to pw: 0.333, average score: 1.000)
  Genes in pathway or complex:
             0.9932 0.9701 EG10248 (dppA) DPPA-MONOMER (DppA)
             0.9875 0.9334 EG12626 (dppC) DPPC-MONOMER (DppC)
             0.9959 0.9825 EG12625 (dppB) DPPB-MONOMER (DppB)
   *in cand* 0.9997 0.9994 EG12628 (dppF) DPPF-MONOMER (DppF)
   *in cand* 0.9997 0.9994 EG12627 (dppD) DPPD-MONOMER (DppD)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9995 EG10677 (oppD) OPPD-MONOMER (OppD)
   *in cand* 0.9997 0.9995 EG10678 (oppF) OPPF-MONOMER (OppF)
   *in cand* 0.9997 0.9995 G6777 (ddpF) YDDO-MONOMER (YddO)
   *in cand* 0.9996 0.9994 G6778 (ddpD) YDDP-MONOMER (YddP)

- ABC-59-CPLX (YddO/YddP/YddQ/YddR/YddS ABC transporter) (degree of match pw to cand: 0.400, degree of match cand to pw: 0.333, average score: 0.999)
  Genes in pathway or complex:
   *in cand* 0.9997 0.9995 G6777 (ddpF) YDDO-MONOMER (YddO)
   *in cand* 0.9996 0.9994 G6778 (ddpD) YDDP-MONOMER (YddP)
             0.9862 0.9685 G6781 (ddpA) YDDS-MONOMER (YddS)
             0.9937 0.9716 G6779 (ddpC) YDDQ-MONOMER (YddQ)
             0.9970 0.9882 G6780 (ddpB) YDDR-MONOMER (YddR)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9995 EG10677 (oppD) OPPD-MONOMER (OppD)
   *in cand* 0.9997 0.9995 EG10678 (oppF) OPPF-MONOMER (OppF)
   *in cand* 0.9997 0.9994 EG12627 (dppD) DPPD-MONOMER (DppD)
   *in cand* 0.9997 0.9994 EG12628 (dppF) DPPF-MONOMER (DppF)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG12627 EG12628 (centered at EG12627)
G6777 G6778 (centered at G6778)
EG10677 EG10678 (centered at EG10678)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6778   G6777   EG12628   EG12627   EG10678   EG10677   
212/623227/623244/623236/623249/623269/623
AAUR290340:2:Tyes-----0
AAVE397945:0:Tyes0110--
ABAC204669:0:Tyes-----0
ABAU360910:0:Tyes18080180710568
ACAU438753:0:Tyes9349332829280
ACEL351607:0:Tyes-1--10
AFER243159:0:Tyes---0--
AFUL224325:0:Tyes---0--
AHYD196024:0:Tyes1799080001
AMET293826:0:Tyes84083983301840
ANAE240017:0:Tyes-0--00
AORE350688:0:Tyes011010
APER272557:0:Tyes-0116613491166-
APLE416269:0:Tyes-1101-
APLE434271:0:Tno-1101-
ASAL382245:5:Tyes78117820782781
ASP1667:3:Tyes----00
ASP232721:2:Tyes0110--
ASP62928:0:Tyes-0----
ASP76114:2:Tyes-486-000
BABO262698:0:Tno0210-224210211
BABO262698:1:Tno--0---
BAMB339670:2:Tno----01
BAMB339670:3:Tno-001--
BAMB398577:2:Tno----01
BAMB398577:3:Tno-001--
BAMY326423:0:Tyes101101144
BANT260799:0:Tno0699420442034204936
BANT261594:2:Tno0636414541444145885
BANT568206:2:Tyes033234380437943803069
BANT592021:2:Tno0673436643654366926
BBAC264462:0:Tyes-11010
BBRO257310:0:Tyes100581-990
BCAN483179:0:Tno1661-6760662
BCAN483179:1:Tno--0---
BCEN331271:1:Tno----10
BCEN331271:2:Tno-001--
BCEN331272:2:Tyes----01
BCEN331272:3:Tyes-001--
BCER226900:1:Tyes65265306520923
BCER288681:0:Tno01341634153416267
BCER315749:1:Tyes0116451645
BCER405917:1:Tyes71972009990999
BCER572264:1:Tno59159208590859
BCLA66692:0:Tyes68418801313431330
BHAL272558:0:Tyes3712371137113573580
BJAP224911:0:Fyes6970392437123693710
BLIC279010:0:Tyes4893293290494489
BMAL243160:0:Tno----10
BMAL243160:1:Tno-110--
BMAL320388:0:Tno----10
BMAL320388:1:Tno-110--
BMAL320389:0:Tyes----10
BMAL320389:1:Tyes-001--
BMEL224914:0:Tno66717-066816
BMEL224914:1:Tno--0---
BMEL359391:0:Tno0204-218204205
BMEL359391:1:Tno--0---
BOVI236:0:Tyes1131--0-
BOVI236:1:Tyes---0--
BPAR257311:0:Tno100522-803
BPER257313:0:Tyes-----0
BPET94624:0:Tyes213911014773
BPSE272560:0:Tyes----01
BPSE272560:1:Tyes-110--
BPSE320372:0:Tno----01
BPSE320372:1:Tno-110--
BPSE320373:0:Tno----01
BPSE320373:1:Tno-110--
BPUM315750:0:Tyes128110133128
BSP36773:1:Tyes----10
BSP36773:2:Tyes-001--
BSP376:0:Tyes020127937941832011
BSUB:0:Tyes174110179174
BSUI204722:0:Tyes1--6560643
BSUI204722:1:Tyes--0---
BSUI470137:0:Tno1--6380625
BSUI470137:1:Tno--0---
BTHA271848:0:Tno----01
BTHA271848:1:Tno-110--
BTHU281309:1:Tno33810338233813382254
BTHU412694:1:Tno61161208260826
BVIE269482:6:Tyes----01
BVIE269482:7:Tyes-001--
BWEI315730:4:Tyes6616620936662936
BXEN266265:1:Tyes0---10
CACE272562:1:Tyes348234813481034813482
CBEI290402:0:Tyes1-0101
CBOT36826:1:Tno1---01
CBOT441770:0:Tyes1---01
CBOT441771:0:Tno1---01
CBOT441772:1:Tno1-0-01
CBOT498213:1:Tno1---01
CBOT508765:1:Tyes1-0-01
CBOT515621:2:Tyes1---01
CBOT536232:0:Tno1---01
CCHL340177:0:Tyes178--1780-
CDES477974:0:Tyes0-10--
CDIF272563:1:Tyes1-0101
CHYD246194:0:Tyes011010
CKLU431943:1:Tyes0-----
CKOR374847:0:Tyes-1--10
CNOV386415:0:Tyes0--010
CPER195102:1:Tyes1-0-01
CPER195103:0:Tno1-0-01
CPER289380:3:Tyes1-0-01
CPHY357809:0:Tyes-11757117401174
CSAL290398:0:Tyes-0----
CSP501479:4:Fyes1-0-0-
CSP501479:7:Fyes-0----
CTEP194439:0:Tyes0976-09760
CVIO243365:0:Tyes332411033233324
DARO159087:0:Tyes-0-00-
DDES207559:0:Tyes100101
DGEO319795:1:Tyes100101
DHAF138119:0:Tyes1421431011384
DOLE96561:0:Tyes10-10-
DPSY177439:2:Tyes-1-0--
DRAD243230:3:Tyes1-0101
DRED349161:0:Tyes206102060206120602061
DSHI398580:5:Tyes0-----
DSP216389:0:Tyes1-0-01
DSP255470:0:Tno1-0-01
DVUL882:1:Tyes2397002397--
ECAR218491:0:Tyes102119212001
ECOL199310:0:Tno012602260310
ECOL316407:0:Tno2432422484248310
ECOL331111:6:Tno2692682540254110
ECOL362663:0:Tno012347234810
ECOL364106:1:Tno012623262410
ECOL405955:2:Tyes012410241110
ECOL409438:6:Tyes2802792561256210
ECOL413997:0:Tno2172162181218210
ECOL439855:4:Tno0121052106204205
ECOL469008:0:Tno196219631021722173
ECOL481805:0:Tno200420051022082209
ECOL585034:0:Tno2252242394239510
ECOL585035:0:Tno012544254510
ECOL585055:0:Tno2702692602260310
ECOL585056:2:Tno1941932501250210
ECOL585057:0:Tno1681672459246010
ECOL585397:0:Tno012731273210
ECOL83334:0:Tno3473462739274010
ECOLI:0:Tno2512502342234310
ECOO157:0:Tno1861872705270610
EFAE226185:3:Tyes-----0
EFER585054:1:Tyes101827182801
ESP42895:1:Tyes21295781021282129
FALN326424:0:Tyes-001-1
FMAG334413:1:Tyes----0-
FNOD381764:0:Tyes114001400101
FNUC190304:0:Tyes0--010
FPHI484022:1:Tyes----0-
FRANT:0:Tno----10
FSP1855:0:Tyes---10-
FTUL351581:0:Tno-----0
FTUL393115:0:Tyes----10
FTUL401614:0:Tyes----01
FTUL418136:0:Tno-----0
FTUL458234:0:Tno-----0
GKAU235909:1:Tyes0----0
GMET269799:1:Tyes-00101
GOXY290633:5:Tyes10----
GSUL243231:0:Tyes0-10-0
GTHE420246:1:Tyes012762276312763
GURA351605:0:Tyes-00101
GVIO251221:0:Tyes100101
HACI382638:1:Tyes--0---
HARS204773:0:Tyes0-----
HAUR316274:2:Tyes012278227910
HCHE349521:0:Tyes0174666517476651075
HDUC233412:0:Tyes-110--
HINF281310:0:Tyes159596001
HINF374930:0:Tyes591106059
HINF71421:0:Tno164646501
HMAR272569:8:Tyes-1114101620
HMUK485914:1:Tyes3213203203210321
HNEP81032:0:Tyes----00
HPY:0:Tno--0---
HPYL357544:1:Tyes--0---
HPYL85963:0:Tno--0---
HSAL478009:4:Tyes-149012149-
HSP64091:2:Tno-1470-147-
HWAL362976:1:Tyes-9620-962-
JSP290400:1:Tyes10932421094109310
JSP375286:0:Tyes0-----
KPNE272620:2:Tyes019820782079198199
KRAD266940:2:Fyes-0--889888
LACI272621:0:Tyes-----0
LBRE387344:2:Tyes-----0
LCAS321967:1:Tyes-----0
LDEL321956:0:Tyes-----0
LDEL390333:0:Tyes-----0
LHEL405566:0:Tyes0----0
LINN272626:1:Tno0----0
LINT363253:3:Tyes-0----
LLAC272622:5:Tyes-----0
LLAC272623:0:Tyes-----0
LMON169963:0:Tno0----0
LMON265669:0:Tyes0----0
LPLA220668:0:Tyes-----0
LPNE272624:0:Tno---0--
LPNE297245:1:Fno---0--
LPNE297246:1:Fyes---0--
LPNE400673:0:Tno---0--
LSAK314315:0:Tyes-----0
LSPH444177:1:Tyes193719140191301937
LWEL386043:0:Tyes0----0
MACE188937:0:Tyes--0-0-
MAQU351348:2:Tyes01-0-0
MEXT419610:0:Tyes-0----
MLOT266835:2:Tyes480748083758375701
MMAR394221:0:Tyes----0-
MPET420662:1:Tyes10-1--
MSME246196:0:Tyes100101
MSP266779:3:Tyes3683308901-3088
MSP400668:0:Tyes375915710143614360
MSP409:2:Tyes--1021301100
MSUC221988:0:Tyes-0010-
MVAN350058:0:Tyes-0058001
MXAN246197:0:Tyes100101
NEUR228410:0:Tyes--0---
NFAR247156:2:Tyes-----0
NMUL323848:3:Tyes-00---
NPHA348780:2:Tyes-0----
NSP35761:1:Tyes--1-10
OANT439375:3:Tyes0-----
OANT439375:5:Tyes-25710--
OCAR504832:0:Tyes010-101010
OIHE221109:0:Tyes16190618512517
PABY272844:0:Tyes-608-609-0
PACN267747:0:Tyes-087-870
PAER208963:0:Tyes-1101-
PAER208964:0:Tno-1101-
PARS340102:0:Tyes---0--
PCAR338963:0:Tyes-00-0-
PCRY335284:1:Tyes-001--
PENT384676:0:Tyes-0010-
PFLU205922:0:Tyes-0010-
PFLU216595:1:Tyes7920010-
PFLU220664:0:Tyes31133114010-
PFUR186497:0:Tyes-124011239-0
PHOR70601:0:Tyes-15830-584
PLUM243265:0:Fyes2237-1022362237
PLUT319225:0:Tyes097297209720
PMEN399739:0:Tyes-0010-
PMOB403833:0:Tyes2490250249250249
PMUL272843:1:Tyes166811016671668
PPEN278197:0:Tyes-----0
PPRO298386:2:Tyes011792179310
PPUT160488:0:Tno-0010-
PPUT351746:0:Tyes-0010-
PPUT76869:0:Tno-0010-
PSP117:0:Tyes-00101
PSP296591:2:Tyes36523651214421430-
PSP56811:2:Tyes015161516151510
PSYR205918:0:Tyes1959019881987412275
PSYR223283:2:Tyes10-1961--
RCAS383372:0:Tyes213523032
RDEN375451:4:Tyes10---1
RETL347834:5:Tyes013413413324712470
REUT264198:3:Tyes01-0-0
REUT381666:1:Tyes403-04030-
REUT381666:2:Tyes-1---0
RFER338969:1:Tyes-51102010210-
RLEG216596:3:Tyes-0----
RLEG216596:5:Tyes0-----
RLEG216596:6:Tyes--1027602759
RMET266264:1:Tyes5091150910
RPAL258594:0:Tyes6913---0
RPAL316056:0:Tyes0-1759176017591760
RPAL316057:0:Tyes0--0-0
RPAL316058:0:Tyes093-29792978-
RPOM246200:1:Tyes101207--1206
RRUB269796:1:Tyes115821768176701
RSOL267608:1:Tyes992991-010
RSP101510:2:Fyes----01
RSP101510:3:Fyes-1-0--
RSP357808:0:Tyes223693032
RSPH272943:3:Tyes--10--
RSPH349101:0:Tno01-01-
RSPH349101:1:Tno--0---
RSPH349102:4:Tyes--10--
RXYL266117:0:Tyes077676
SACI56780:0:Tyes-110-0
SAGA205921:0:Tno-----0
SAGA208435:0:Tno-----0
SAGA211110:0:Tyes-----0
SARE391037:0:Tyes439238413841038413842
SAUR158878:1:Tno--4-40
SAUR158879:1:Tno--5-50
SAUR196620:0:Tno--5-50
SAUR273036:0:Tno-----0
SAUR282458:0:Tno--5-50
SAUR282459:0:Tno--5-50
SAUR359786:1:Tno--5-50
SAUR359787:1:Tno--5-50
SAUR367830:3:Tno--5-50
SAUR418127:0:Tyes--5-50
SAUR426430:0:Tno--5-50
SAUR93061:0:Fno--5-50
SAUR93062:1:Tno--5-50
SAVE227882:1:Fyes-00384383384
SBOY300268:1:Tyes0118711872236237
SCO:2:Fyes03601010
SDYS300267:1:Tyes02883029303010
SENT209261:0:Tno121432143214201
SENT220341:0:Tno026082608260710
SENT295319:0:Tno022592259226010
SENT321314:2:Tno118501850185101
SENT454169:2:Tno119321932193301
SEPI176279:1:Tyes0----0
SEPI176280:0:Tno0----0
SERY405948:0:Tyes-5845845835840
SFLE198214:0:Tyes4564572222222310
SFLE373384:0:Tno4484492168216710
SFUM335543:0:Tyes-001-1
SGLO343509:3:Tyes135413551013551354
SHAE279808:0:Tyes0----0
SHIGELLA:0:Tno45812504250310
SLAC55218:0:Fyes----00
SLAC55218:1:Fyes-001--
SMAR399550:0:Tyes-00-01010
SMED366394:1:Tyes650649-0548-
SMED366394:3:Tyes--0--2495
SMEL266834:0:Tyes---0383-
SMEL266834:2:Tyes189118920--2270
SMUT210007:0:Tyes-----0
SPRO399741:1:Tyes226122621026082609
SSAP342451:2:Tyes0----0
SSON300269:1:Tyes0121002099272273
SSP292414:1:Tyes0--494--
SSP292414:2:Tyes-0----
SSP387093:0:Tyes011--0
SSP644076:2:Fyes---0--
SSP644076:3:Fyes0-1-10
SSP644076:6:Fyes-0----
STHE292459:0:Tyes176217610176217611762
STRO369723:0:Tyes358635853585035853586
STYP99287:1:Tyes118751875187601
TDEN243275:0:Tyes02022022032020
TDEN292415:0:Tyes-0-0--
TFUS269800:0:Tyes0-----
TKOD69014:0:Tyes-----0
TLET416591:0:Tyes04504504541347451
TMAR243274:0:Tyes35561227312270
TPEN368408:1:Tyes-0----
TPET390874:0:Tno0467467013
TPSE340099:0:Tyes100114511452
TROS309801:1:Tyes011010
TSP1755:0:Tyes70-0-070
TSP28240:0:Tyes047565806583
TTEN273068:0:Tyes182018211821182010
TTHE262724:1:Tyes011010
TTHE300852:2:Tyes011010
TVOL273116:0:Tyes-0----
UMET351160:0:Tyes100-01
VCHO:0:Tyes011010
VCHO345073:1:Tno011010
VEIS391735:1:Tyes279627953629036293630
VFIS312309:2:Tyes93419330933934
VPAR223926:1:Tyes751001750751
VVUL196600:2:Tyes011010
VVUL216895:1:Tno100101
XAUT78245:1:Tyes0110-0
YENT393305:1:Tyes1-1816181701
YPES187410:5:Tno0-1817181610
YPES214092:3:Tno0-1763176410
YPES349746:2:Tno1-1859185801
YPES360102:3:Tyes0-2314231510
YPES377628:2:Tno0-2031203210
YPES386656:2:Tno1-2424242501
YPSE273123:2:Tno0-1727172810
YPSE349747:2:Tno1-2087208801



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