CANDIDATE ID: 142

CANDIDATE ID: 142

NUMBER OF GENES: 6
AVERAGE SCORE:    9.9961040e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.6666667e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6777 (ddpF) (b1483)
   Products of gene:
     - YDDO-MONOMER (YddO)
     - ABC-59-CPLX (YddO/YddP/YddQ/YddR/YddS ABC transporter)

- EG12628 (dppF) (b3540)
   Products of gene:
     - DPPF-MONOMER (DppF)
     - ABC-8-CPLX (dipeptide ABC transporter)
       Reactions:
        ATP + a dipeptide[periplasmic space] + H2O  ->  ADP + phosphate + a dipeptide[cytosol]

- EG12627 (dppD) (b3541)
   Products of gene:
     - DPPD-MONOMER (DppD)
     - ABC-8-CPLX (dipeptide ABC transporter)
       Reactions:
        ATP + a dipeptide[periplasmic space] + H2O  ->  ADP + phosphate + a dipeptide[cytosol]

- EG12304 (sapD) (b1291)
   Products of gene:
     - SAPD-MONOMER (SapD)
     - ABC-29-CPLX (peptide uptake ABC transporter)
       Reactions:
        ATP + a peptide[periplasmic space] + H2O  ->  ADP + phosphate + a peptide[cytosol]

- EG10678 (oppF) (b1247)
   Products of gene:
     - OPPF-MONOMER (OppF)
     - CPLX0-3970 (murein tripeptide ABC transporter)
       Reactions:
        ATP + L-Ala-D-Glu-meso-A2pm[periplasmic space] + H2O  ->  L-Ala-D-Glu-meso-A2pm[cytosol] + ADP + phosphate
     - ABC-22-CPLX (oligopeptide ABC transporter)
       Reactions:
        ATP + a peptide[periplasmic space] + H2O  ->  ADP + phosphate + a peptide[cytosol]

- EG10677 (oppD) (b1246)
   Products of gene:
     - OPPD-MONOMER (OppD)
     - CPLX0-3970 (murein tripeptide ABC transporter)
       Reactions:
        ATP + L-Ala-D-Glu-meso-A2pm[periplasmic space] + H2O  ->  L-Ala-D-Glu-meso-A2pm[cytosol] + ADP + phosphate
     - ABC-22-CPLX (oligopeptide ABC transporter)
       Reactions:
        ATP + a peptide[periplasmic space] + H2O  ->  ADP + phosphate + a peptide[cytosol]



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ORGANISMS CONTAINING AT LEAST 5 GENES FROM THE GROUP:

Total number of orgs: 196
Effective number of orgs (counting one per cluster within 468 clusters): 136

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
XAUT78245 ncbi Xanthobacter autotrophicus Py25
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106336
VFIS312309 ncbi Vibrio fischeri ES1146
VEIS391735 ncbi Verminephrobacter eiseniae EF01-26
VCHO345073 ncbi Vibrio cholerae O3956
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169616
UMET351160 ncbi uncultured methanogenic archaeon RC-I5
TTHE300852 ncbi Thermus thermophilus HB85
TTHE262724 ncbi Thermus thermophilus HB275
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB46
TSP28240 Thermotoga sp.6
TROS309801 ncbi Thermomicrobium roseum DSM 51596
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332236
TPET390874 ncbi Thermotoga petrophila RKU-16
TMAR243274 ncbi Thermotoga maritima MSB86
TLET416591 ncbi Thermotoga lettingae TMO6
TDEN243275 ncbi Treponema denticola ATCC 354056
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT26
STRO369723 ncbi Salinispora tropica CNB-4406
STHE292459 ncbi Symbiobacterium thermophilum IAM 148636
SSP644076 Silicibacter sp. TrichCH4B6
SSON300269 ncbi Shigella sonnei Ss0466
SPRO399741 ncbi Serratia proteamaculans 5686
SMEL266834 ncbi Sinorhizobium meliloti 10216
SMED366394 ncbi Sinorhizobium medicae WSM4196
SMAR399550 ncbi Staphylothermus marinus F15
SLAC55218 Ruegeria lacuscaerulensis6
SHIGELLA ncbi Shigella flexneri 2a str. 2457T6
SGLO343509 ncbi Sodalis glossinidius morsitans6
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB5
SFLE373384 ncbi Shigella flexneri 5 str. 84016
SFLE198214 ncbi Shigella flexneri 2a str. 3016
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23385
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4766
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B676
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91506
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SDYS300267 ncbi Shigella dysenteriae Sd1976
SCO ncbi Streptomyces coelicolor A3(2)6
SBOY300268 ncbi Shigella boydii Sb2276
SAVE227882 ncbi Streptomyces avermitilis MA-46806
SARE391037 ncbi Salinispora arenicola CNS-2056
SACI56780 ncbi Syntrophus aciditrophicus SB5
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99416
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170295
RSP357808 ncbi Roseiflexus sp. RS-16
RSP101510 ncbi Rhodococcus jostii RHA15
RSOL267608 ncbi Ralstonia solanacearum GMI10005
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111706
RMET266264 ncbi Ralstonia metallidurans CH346
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38416
RFER338969 ncbi Rhodoferax ferrireducens T1185
REUT381666 ncbi Ralstonia eutropha H166
RETL347834 ncbi Rhizobium etli CFN 426
RCAS383372 ncbi Roseiflexus castenholzii DSM 139416
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a6
PSP56811 Psychrobacter sp.6
PSP296591 ncbi Polaromonas sp. JS6665
PSP117 Pirellula sp.5
PPUT76869 ncbi Pseudomonas putida GB-15
PPUT351746 ncbi Pseudomonas putida F15
PPUT160488 ncbi Pseudomonas putida KT24405
PPRO298386 ncbi Photobacterium profundum SS96
PMUL272843 ncbi Pasteurella multocida multocida Pm706
PMOB403833 ncbi Petrotoga mobilis SJ956
PMEN399739 ncbi Pseudomonas mendocina ymp5
PLUT319225 ncbi Chlorobium luteolum DSM 2735
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO15
PHOR70601 ncbi Pyrococcus horikoshii OT35
PFUR186497 ncbi Pyrococcus furiosus DSM 36385
PFLU220664 ncbi Pseudomonas fluorescens Pf-55
PFLU216595 ncbi Pseudomonas fluorescens SBW255
PFLU205922 ncbi Pseudomonas fluorescens Pf0-15
PENT384676 ncbi Pseudomonas entomophila L485
PAER208964 ncbi Pseudomonas aeruginosa PAO15
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA145
OIHE221109 ncbi Oceanobacillus iheyensis HTE8316
OCAR504832 ncbi Oligotropha carboxidovorans OM55
MXAN246197 ncbi Myxococcus xanthus DK 16226
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-16
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E5
MSP409 Methylobacterium sp.5
MSP400668 ncbi Marinomonas sp. MWYL16
MSP266779 ncbi Chelativorans sp. BNC15
MSME246196 ncbi Mycobacterium smegmatis MC2 1556
MLOT266835 ncbi Mesorhizobium loti MAFF3030996
LSPH444177 ncbi Lysinibacillus sphaericus C3-416
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785786
JSP290400 ncbi Jannaschia sp. CCS16
HSAL478009 ncbi Halobacterium salinarum R15
HMUK485914 ncbi Halomicrobium mukohataei DSM 122866
HMAR272569 ncbi Haloarcula marismortui ATCC 430496
HINF71421 ncbi Haemophilus influenzae Rd KW206
HINF374930 ncbi Haemophilus influenzae PittEE6
HINF281310 ncbi Haemophilus influenzae 86-028NP6
HCHE349521 ncbi Hahella chejuensis KCTC 23966
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237796
GVIO251221 ncbi Gloeobacter violaceus PCC 74216
GURA351605 ncbi Geobacter uraniireducens Rf46
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-26
GMET269799 ncbi Geobacter metallireducens GS-156
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B16
ESP42895 Enterobacter sp.6
EFER585054 ncbi Escherichia fergusonii ATCC 354696
ECOO157 ncbi Escherichia coli O157:H7 EDL9336
ECOL83334 Escherichia coli O157:H76
ECOL585397 ncbi Escherichia coli ED1a6
ECOL585057 ncbi Escherichia coli IAI396
ECOL585056 ncbi Escherichia coli UMN0266
ECOL585055 ncbi Escherichia coli 559896
ECOL585035 ncbi Escherichia coli S886
ECOL585034 ncbi Escherichia coli IAI16
ECOL481805 ncbi Escherichia coli ATCC 87396
ECOL469008 ncbi Escherichia coli BL21(DE3)6
ECOL439855 ncbi Escherichia coli SMS-3-56
ECOL413997 ncbi Escherichia coli B str. REL6066
ECOL409438 ncbi Escherichia coli SE116
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI896
ECOL362663 ncbi Escherichia coli 5366
ECOL331111 ncbi Escherichia coli E24377A6
ECOL316407 ncbi Escherichia coli K-12 substr. W31106
ECOL199310 ncbi Escherichia coli CFT0736
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10436
DRED349161 ncbi Desulfotomaculum reducens MI-16
DHAF138119 ncbi Desulfitobacterium hafniense Y516
DGEO319795 ncbi Deinococcus geothermalis DSM 113005
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G206
CVIO243365 ncbi Chromobacterium violaceum ATCC 124726
CPHY357809 ncbi Clostridium phytofermentans ISDg5
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29016
CACE272562 ncbi Clostridium acetobutylicum ATCC 8246
BWEI315730 ncbi Bacillus weihenstephanensis KBAB46
BVIE269482 ncbi Burkholderia vietnamiensis G46
BTHU412694 ncbi Bacillus thuringiensis Al Hakam6
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-276
BTHA271848 ncbi Burkholderia thailandensis E2646
BSUI470137 ncbi Brucella suis ATCC 234455
BSUI204722 ncbi Brucella suis 13305
BSUB ncbi Bacillus subtilis subtilis 1686
BSP376 Bradyrhizobium sp.6
BSP36773 Burkholderia sp.6
BPUM315750 ncbi Bacillus pumilus SAFR-0326
BPSE320373 ncbi Burkholderia pseudomallei 6686
BPSE320372 ncbi Burkholderia pseudomallei 1710b6
BPSE272560 ncbi Burkholderia pseudomallei K962436
BPET94624 Bordetella petrii6
BPAR257311 ncbi Bordetella parapertussis 128225
BMEL359391 ncbi Brucella melitensis biovar Abortus 23086
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M6
BMAL320389 ncbi Burkholderia mallei NCTC 102476
BMAL320388 ncbi Burkholderia mallei SAVP16
BMAL243160 ncbi Burkholderia mallei ATCC 233446
BLIC279010 ncbi Bacillus licheniformis ATCC 145806
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1106
BHAL272558 ncbi Bacillus halodurans C-1256
BCLA66692 ncbi Bacillus clausii KSM-K166
BCER572264 ncbi Bacillus cereus 03BB1026
BCER405917 Bacillus cereus W6
BCER315749 ncbi Bacillus cytotoxicus NVH 391-986
BCER288681 ncbi Bacillus cereus E33L6
BCER226900 ncbi Bacillus cereus ATCC 145795
BCEN331272 ncbi Burkholderia cenocepacia HI24246
BCEN331271 ncbi Burkholderia cenocepacia AU 10546
BCAN483179 ncbi Brucella canis ATCC 233656
BBRO257310 ncbi Bordetella bronchiseptica RB505
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1005
BANT592021 ncbi Bacillus anthracis A02486
BANT568206 ncbi Bacillus anthracis CDC 6846
BANT261594 ncbi Bacillus anthracis Ames Ancestor6
BANT260799 ncbi Bacillus anthracis Sterne5
BAMY326423 ncbi Bacillus amyloliquefaciens FZB426
BAMB398577 ncbi Burkholderia ambifaria MC40-66
BAMB339670 ncbi Burkholderia ambifaria AMMD6
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9416
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4496
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL035
APLE416269 ncbi Actinobacillus pleuropneumoniae L205
APER272557 ncbi Aeropyrum pernix K15
AORE350688 ncbi Alkaliphilus oremlandii OhILAs5
AMET293826 ncbi Alkaliphilus metalliredigens QYMF6
AHYD196024 Aeromonas hydrophila dhakensis6
ACAU438753 ncbi Azorhizobium caulinodans ORS 5716
ABAU360910 ncbi Bordetella avium 197N6


Names of the homologs of the genes in the group in each of these orgs
  G6777   EG12628   EG12627   EG12304   EG10678   EG10677   
YPSE349747 YPSIP31758_4071YPSIP31758_4072YPSIP31758_1781YPSIP31758_1956YPSIP31758_1957
YPSE273123 YPTB3838YPTB3839YPTB2275YPTB2109YPTB2108
YPES386656 YPDSF_3365YPDSF_3366YPDSF_0785YPDSF_0950YPDSF_0951
YPES377628 YPN_3648YPN_3649YPN_1818YPN_1652YPN_1651
YPES360102 YPA_3826YPA_3827YPA_1707YPA_1543YPA_1542
YPES349746 YPANGOLA_A4060YPANGOLA_A4059YPANGOLA_A2543YPANGOLA_A2159YPANGOLA_A2160
YPES214092 YPO3999YPO4000YPO2358YPO2186YPO2185
YPES187410 Y3830Y3829Y1974Y2030Y2029
YENT393305 YE4079YE4080YE2128YE2229YE2230
XAUT78245 XAUT_2765XAUT_2765XAUT_2764XAUT_2764XAUT_2764
VVUL216895 VV1_3078VV1_3078VV1_3079VV1_2884VV1_3078VV1_3079
VVUL196600 VV1207VV1207VV1206VV1387VV1207VV1206
VPAR223926 VP1343VP1343VP1344VP1168VP2087VP2088
VFIS312309 VF0692VF1593VF0691VFA0306VF1593VF1594
VEIS391735 VEIS_4117VEIS_4962VEIS_1298VEIS_4963VEIS_4962VEIS_4963
VCHO345073 VC0395_A0613VC0395_A0613VC0395_A0612VC0395_A1288VC0395_A0613VC0395_A0612
VCHO VC1095VC1095VC1094VC1683VC1095VC1094
UMET351160 LRC381LRC381LRC380LRC381LRC380
TTHE300852 TTHA0473TTHA0473TTHA0472TTHA0473TTHA0472
TTHE262724 TT_C0102TT_C0102TT_C0101TT_C0102TT_C0101
TTEN273068 TTE2526TTE2526TTE2525TTE2525TTE0615TTE0614
TSP28240 TRQ2_0889TRQ2_1075TRQ2_0434TRQ2_1076TRQ2_1075TRQ2_0437
TROS309801 TRD_1630TRD_1630TRD_1629TRD_1629TRD_1630TRD_1629
TPSE340099 TETH39_0198TETH39_0198TETH39_0199TETH39_0199TETH39_1685TETH39_1686
TPET390874 TPET_0867TPET_0867TPET_0419TPET_1685TPET_0420TPET_0422
TMAR243274 TM_1063TM_1750TM_0501TM_1749TM_1750TM_0498
TLET416591 TLET_0644TLET_0644TLET_0648TLET_0648TLET_1527TLET_0645
TDEN243275 TDE_1271TDE_1271TDE_1272TDE_1068TDE_1271TDE_1068
STYP99287 STM3626STM3626STM3627STM1695STM1742STM1743
STRO369723 STROP_3819STROP_3819STROP_0219STROP_3820STROP_3819STROP_3820
STHE292459 STH2823STH1111STH2824STH1110STH2823STH2824
SSP644076 SCH4B_2892SCH4B_3702SCH4B_0504SCH4B_0504SCH4B_3702SCH4B_3701
SSON300269 SSO_1641SSO_3850SSO_3849SSO_1849SSO_1933SSO_1934
SPRO399741 SPRO_2351SPRO_0142SPRO_0141SPRO_2632SPRO_2697SPRO_2698
SMEL266834 SMC02424SMC00790SMA1371SMA2081SMA2079SMC03125
SMED366394 SMED_5788SMED_0333SMED_5064SMED_5789SMED_5658SMED_2856
SMAR399550 SMAR_0342SMAR_0342SMAR_0343SMAR_0342SMAR_1329
SLAC55218 SL1157_0093SL1157_0093SL1157_0094SL1157_0094SL1157_A0137SL1157_A0137
SHIGELLA OPPFDPPFDPPDSAPDOPPFOPPD
SGLO343509 SG1377SG0064SG0063SG1511SG1377SG1376
SFUM335543 SFUM_3544SFUM_3544SFUM_3545SFUM_3545SFUM_3545
SFLE373384 SFV_1738SFV_3547SFV_3546SFV_1305SFV_1259SFV_1258
SFLE198214 AAN43314.1AAN45026.1AAN45027.1AAN42907.1AAN42861.1AAN42860.1
SERY405948 SACE_0848SACE_0848SACE_0847SACE_0848SACE_0260
SENT454169 SEHA_C3946SEHA_C3946SEHA_C3947SEHA_C1881SEHA_C1933SEHA_C1934
SENT321314 SCH_3557SCH_3557SCH_3558SCH_1688SCH_1738SCH_1739
SENT295319 SPA3483SPA3483SPA3484SPA1181SPA1135SPA1134
SENT220341 STY4172STY4172STY4171STY1356STY1309STY1308
SENT209261 T3889T3889T3888T1609T1654T1655
SDYS300267 SDY_1611SDY_4563SDY_4564SDY_1378SDY_1305SDY_1304
SCO SCO5480SCO5121SCO5120SCO5120SCO5121SCO5120
SBOY300268 SBO_1574SBO_3539SBO_3540SBO_1771SBO_1820SBO_1821
SAVE227882 SAV2765SAV2765SAV3146SAV5609SAV3145SAV3146
SARE391037 SARE_4209SARE_4209SARE_0258SARE_4210SARE_4209SARE_4210
SACI56780 SYN_02172SYN_02172SYN_02171SYN_02171SYN_02171
RXYL266117 RXYL_0876RXYL_0876RXYL_0875RXYL_3025RXYL_0876RXYL_0875
RSPH349101 RSPH17029_4158RSPH17029_3973RSPH17029_4157RSPH17029_4157RSPH17029_4158
RSP357808 ROSERS_2812ROSERS_0419ROSERS_0416ROSERS_0416ROSERS_0419ROSERS_0418
RSP101510 RHA1_RO03932RHA1_RO03931RHA1_RO09045RHA1_RO09044RHA1_RO09045
RSOL267608 RSC2866RSC1884RSC1884RSC1885RSC1884
RRUB269796 RRU_A2174RRU_A2360RRU_A2359RRU_A2359RRU_A0588RRU_A0589
RMET266264 RMET_4580RMET_4580RMET_5091RMET_4579RMET_4580RMET_4579
RLEG216596 PRL100280RL0782RL0781RL0781RL3547RL3546
RFER338969 RFER_0981RFER_1950RFER_1951RFER_1951RFER_0930
REUT381666 H16_A1304H16_B0716H16_B1125H16_A1303H16_B0716H16_A1303
RETL347834 RHE_CH00740RHE_CH00740RHE_CH00739RHE_CH00739RHE_CH03100RHE_CH03099
RCAS383372 RCAS_2420RCAS_1064RCAS_1061RCAS_1061RCAS_1064RCAS_1063
PSYR205918 PSYR_2263PSYR_4242PSYR_4241PSYR_4241PSYR_2677PSYR_2540
PSP56811 PSYCPRWF_1530PSYCPRWF_1530PSYCPRWF_1529PSYCPRWF_1529PSYCPRWF_0025PSYCPRWF_0024
PSP296591 BPRO_4337BPRO_2815BPRO_2814BPRO_2814BPRO_0660
PSP117 RB12858RB12858RB12859RB12858RB12859
PPUT76869 PPUTGB1_0921PPUTGB1_0921PPUTGB1_0922PPUTGB1_0922PPUTGB1_0921
PPUT351746 PPUT_0917PPUT_0917PPUT_0918PPUT_0918PPUT_0917
PPUT160488 PP_0878PP_0878PP_0879PP_0879PP_0878
PPRO298386 PBPRA1135PBPRA2934PBPRA2935PBPRA2444PBPRA1135PBPRA1134
PMUL272843 PM0240PM0240PM0239PM0914PM1906PM1907
PMOB403833 PMOB_1325PMOB_1579PMOB_1578PMOB_1578PMOB_1579PMOB_1578
PMEN399739 PMEN_0837PMEN_0837PMEN_0838PMEN_0838PMEN_0837
PLUT319225 PLUT_1632PLUT_1632PLUT_0631PLUT_1632PLUT_0631
PLUM243265 PLU0304PLU0303PLU2590PLU2489PLU2490
PHOR70601 PH1413PH1958PH1412PH1412PH1959
PFUR186497 PF1412PF0194PF1411PF1411PF0193
PFLU220664 PFL_4028PFL_0874PFL_0875PFL_0875PFL_0874
PFLU216595 PFLU0819PFLU0819PFLU0820PFLU0820PFLU0819
PFLU205922 PFL_0809PFL_0809PFL_0810PFL_0810PFL_0809
PENT384676 PSEEN1053PSEEN1053PSEEN1054PSEEN1054PSEEN1053
PAER208964 PA4506PA4506PA4505PA4505PA4506
PAER208963 PA14_58490PA14_58490PA14_58470PA14_58470PA14_58490
OIHE221109 OB3070OB2452OB3069OB3069OB2963OB2968
OCAR504832 OCAR_7522OCAR_7522OCAR_4431OCAR_7522OCAR_7522
MXAN246197 MXAN_4664MXAN_4664MXAN_4665MXAN_4665MXAN_4664MXAN_4665
MVAN350058 MVAN_0434MVAN_0434MVAN_1021MVAN_0435MVAN_0434MVAN_0435
MSUC221988 MS1364MS1364MS1365MS0853MS1364
MSP409 M446_1694M446_1693M446_1693M446_3923M446_2850
MSP400668 MMWYL1_1682MMWYL1_0110MMWYL1_0111MMWYL1_0111MMWYL1_4408MMWYL1_4407
MSP266779 MESO_3136MESO_0063MESO_0064MESO_2384MESO_3135
MSME246196 MSMEG_0639MSMEG_0639MSMEG_0640MSMEG_0640MSMEG_0639MSMEG_0640
MLOT266835 MLR6675MLR5420MLR5419MLL0596MLL0595MLL0596
LSPH444177 BSPH_4236BSPH_2217BSPH_4235BSPH_0316BSPH_2217BSPH_4261
KPNE272620 GKPORF_B1329GKPORF_B3248GKPORF_B3249GKPORF_B0315GKPORF_B1329GKPORF_B1330
JSP290400 JANN_3293JANN_4132JANN_4131JANN_4131JANN_3054JANN_3053
HSAL478009 OE4550FOE4301ROE4317FOE4302ROE4550F
HMUK485914 HMUK_0537HMUK_0537HMUK_0538HMUK_0538HMUK_0218HMUK_0538
HMAR272569 RRNAC3295RRNAC2043RRNAC2042RRNAC2042RRNAC2227RRNAC2042
HINF71421 HI_1184HI_1184HI_1185HI_1641HI_1120HI_1121
HINF374930 CGSHIEE_06130CGSHIEE_06130CGSHIEE_06125CGSHIEE_05900CGSHIEE_06445CGSHIEE_06440
HINF281310 NTHI1353NTHI1353NTHI1354NTHI1398NTHI1286NTHI1287
HCHE349521 HCH_01830HCH_00699HCH_01831HCH_01831HCH_00699HCH_01130
HAUR316274 HAUR_1227HAUR_3497HAUR_3498HAUR_3498HAUR_1227HAUR_1226
GVIO251221 GLL4122GLL4122GLL4123GLL4123GLL4122GLL4123
GURA351605 GURA_1711GURA_1711GURA_1712GURA_1712GURA_1711GURA_1712
GTHE420246 GTNG_0477GTNG_3281GTNG_3282GTNG_3282GTNG_0477GTNG_3282
GMET269799 GMET_0847GMET_0847GMET_0848GMET_0848GMET_0847GMET_0848
FNOD381764 FNOD_1565FNOD_1565FNOD_0193FNOD_0193FNOD_0192FNOD_0193
ESP42895 ENT638_0752ENT638_0188ENT638_0187ENT638_2174ENT638_2298ENT638_2299
EFER585054 EFER_1708EFER_3537EFER_3538EFER_1663EFER_1708EFER_1709
ECOO157 Z2227DPPFDPPDSAPDOPPFOPPD
ECOL83334 ECS2087ECS4420ECS4421ECS1868ECS1747ECS1746
ECOL585397 ECED1_1399ECED1_4219ECED1_4220ECED1_1506ECED1_1399ECED1_1398
ECOL585057 ECIAI39_1747ECIAI39_4049ECIAI39_4050ECIAI39_1642ECIAI39_1582ECIAI39_1581
ECOL585056 ECUMN_1737ECUMN_4050ECUMN_4051ECUMN_1596ECUMN_1544ECUMN_1543
ECOL585055 EC55989_1615EC55989_3991EC55989_3992EC55989_1453EC55989_1344EC55989_1343
ECOL585035 ECS88_1315ECS88_3960ECS88_3961ECS88_1437ECS88_1315ECS88_1314
ECOL585034 ECIAI1_1493ECIAI1_3698ECIAI1_3699ECIAI1_1316ECIAI1_1266ECIAI1_1265
ECOL481805 ECOLC_2174ECOLC_0175ECOLC_0174ECOLC_2334ECOLC_2381ECOLC_2382
ECOL469008 ECBD_2156ECBD_0196ECBD_0195ECBD_2326ECBD_2375ECBD_2376
ECOL439855 ECSMS35_1690ECSMS35_3859ECSMS35_3860ECSMS35_1831ECSMS35_1893ECSMS35_1894
ECOL413997 ECB_01441ECB_03391ECB_03392ECB_01268ECB_01221ECB_01220
ECOL409438 ECSE_1573ECSE_3813ECSE_3814ECSE_1343ECSE_1295ECSE_1294
ECOL405955 APECO1_362APECO1_2908APECO1_2907APECO1_454APECO1_362APECO1_361
ECOL364106 UTI89_C1445UTI89_C4078UTI89_C4079UTI89_C1568UTI89_C1445UTI89_C1444
ECOL362663 ECP_1294ECP_3641ECP_3642ECP_1349ECP_1294ECP_1293
ECOL331111 ECE24377A_1672ECE24377A_4032ECE24377A_4033ECE24377A_1498ECE24377A_1395ECE24377A_1394
ECOL316407 ECK1477:JW1478:B1483ECK3527:JW3509:B3540ECK3528:JW3510:B3541ECK1286:JW1284:B1291ECK1241:JW1239:B1247ECK1240:JW1238:B1246
ECOL199310 C1711C4355C4356C1768C1711C1710
ECAR218491 ECA2320ECA4390ECA4391ECA1974ECA2320ECA2321
DRED349161 DRED_0393DRED_2450DRED_2451DRED_2451DRED_2450DRED_2451
DHAF138119 DSY0647DSY0506DSY0505DSY0646DSY0506DSY1863
DGEO319795 DGEO_1340DGEO_1340DGEO_1341DGEO_1340DGEO_1341
DDES207559 DDE_1181DDE_1181DDE_1182DDE_1182DDE_1181DDE_1182
CVIO243365 CV_1101CV_1101CV_1100CV_1100CV_4325CV_4326
CPHY357809 CPHY_1999CPHY_0816CPHY_1998CPHY_0809CPHY_1998
CHYD246194 CHY_1127CHY_1127CHY_1126CHY_1126CHY_1127CHY_1126
CACE272562 CAC3635CAC3635CAC0179CAC3642CAC3635CAC3636
BWEI315730 BCERKBAB4_0807BCERKBAB4_0212BCERKBAB4_1092BCERKBAB4_0574BCERKBAB4_0807BCERKBAB4_1092
BVIE269482 BCEP1808_3126BCEP1808_3126BCEP1808_3127BCEP1808_3127BCEP1808_3702BCEP1808_3703
BTHU412694 BALH_0820BALH_0223BALH_1045BALH_0601BALH_0223BALH_1045
BTHU281309 BT9727_0826BT9727_4235BT9727_4234BT9727_0571BT9727_4235BT9727_1086
BTHA271848 BTH_I0224BTH_I0224BTH_I0223BTH_I0223BTH_II2215BTH_II2216
BSUI470137 BSUIS_A1638BSUIS_B1089BSUIS_B1089BSUIS_B0407BSUIS_B1075
BSUI204722 BR_1582BR_A1094BR_A1094BR_A0404BR_A1079
BSUB BSU11370BSU11370BSU11360BSU11360BSU13000BSU12950
BSP376 BRADO3023BRADO1739BRADO1740BRADO1740BRADO1097BRADO3022
BSP36773 BCEP18194_A6388BCEP18194_A6388BCEP18194_A6389BCEP18194_A6389BCEP18194_B0119BCEP18194_B0118
BPUM315750 BPUM_1061BPUM_1061BPUM_1060BPUM_1060BPUM_1192BPUM_1187
BPSE320373 BURPS668_0247BURPS668_0247BURPS668_0246BURPS668_0246BURPS668_A3015BURPS668_A3016
BPSE320372 BURPS1710B_A0465BURPS1710B_A0465BURPS1710B_A0464BURPS1710B_A0464BURPS1710B_B1480BURPS1710B_B1481
BPSE272560 BPSL0253BPSL0253BPSL0252BPSL0252BPSS2137BPSS2138
BPET94624 BPET0286BPET0286BPET0285BPET0285BPET0286BPET5005
BPAR257311 BPP3589BPP3589BPP4126BPP3590BPP4413
BMEL359391 BAB2_1037BAB1_1596BAB2_1052BAB2_1052BAB2_1037BAB2_1038
BMEL224914 BMEII0223BMEI0438BMEII0206BMEII0206BMEII0864BMEII0222
BMAL320389 BMA10247_3374BMA10247_3374BMA10247_3375BMA10247_3375BMA10247_A0389BMA10247_A0388
BMAL320388 BMASAVP1_A2973BMASAVP1_A2973BMASAVP1_A2972BMASAVP1_A2972BMASAVP1_1538BMASAVP1_1537
BMAL243160 BMA_3305BMA_3305BMA_3304BMA_3304BMA_A0354.1BMA_A0354
BLIC279010 BL03317BL03317BL03044BL03044BL03763BL03769
BJAP224911 BLL4892BLR1357BLR3344BLR3344BLR1357BLL0990
BHAL272558 BH3645BH3645BH0350BH0350BH0351BH0028
BCLA66692 ABC2415ABC0568ABC3658ABC0567ABC3657ABC0567
BCER572264 BCA_0959BCA_0273BCA_1226BCA_0698BCA_0273BCA_1226
BCER405917 BCE_1004BCE_0252BCE_1303BCE_0728BCE_0252BCE_1303
BCER315749 BCER98_0223BCER98_0223BCER98_0899BCER98_0555BCER98_0223BCER98_0899
BCER288681 BCE33L0811BCE33L4247BCE33L4246BCE33L0570BCE33L4247BCE33L1080
BCER226900 BC_0911BC_0245BC_0910BC_0245BC_1182
BCEN331272 BCEN2424_3041BCEN2424_3041BCEN2424_3042BCEN2424_3042BCEN2424_5538BCEN2424_5539
BCEN331271 BCEN_2427BCEN_2427BCEN_2428BCEN_2428BCEN_5322BCEN_5321
BCAN483179 BCAN_B1101BCAN_A1617BCAN_B1116BCAN_B1116BCAN_B0407BCAN_B1102
BBRO257310 BB4024BB4024BB4596BB4025BB5001
BBAC264462 BD2190BD2190BD2189BD2190BD2189
BANT592021 BAA_1016BAA_4750BAA_4749BAA_0743BAA_4750BAA_1270
BANT568206 BAMEG_3649BAMEG_4769BAMEG_4768BAMEG_3927BAMEG_4769BAMEG_3394
BANT261594 GBAA0912GBAA4734GBAA4733GBAA0660GBAA4734GBAA1194
BANT260799 BAS0863BAS4394BAS4393BAS4394BAS1104
BAMY326423 RBAM_011370RBAM_011370RBAM_011360RBAM_011360RBAM_011370RBAM_012800
BAMB398577 BAMMC406_2952BAMMC406_2952BAMMC406_2953BAMMC406_2953BAMMC406_5409BAMMC406_5410
BAMB339670 BAMB_3086BAMB_3086BAMB_3087BAMB_3087BAMB_4862BAMB_4863
BABO262698 BRUAB2_1018BRUAB1_1569BRUAB2_1033BRUAB2_1033BRUAB2_1018BRUAB2_1019
ASAL382245 ASA_0885ASA_1702ASA_0884ASA_2430ASA_1702ASA_1701
APLE434271 APJL_0068APJL_0068APJL_0067APJL_0799APJL_0068
APLE416269 APL_0068APL_0068APL_0067APL_0793APL_0068
APER272557 APE0300APE1402APE1578APE1578APE1402
AORE350688 CLOS_1345CLOS_1345CLOS_1344CLOS_1345CLOS_1344
AMET293826 AMET_2911AMET_2905AMET_2064AMET_2064AMET_2065AMET_2912
AHYD196024 AHA_3428AHA_2609AHA_3429AHA_1873AHA_2609AHA_2610
ACAU438753 AZC_2907AZC_2011AZC_2012AZC_2908AZC_2011AZC_1983
ABAU360910 BAV0997BAV2800BAV0998BAV0998BAV0997BAV1561


Organism features enriched in list (features available for 183 out of the 196 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.007830445112
Disease:Anthrax 0.009490344
Disease:Brucellosis 0.002933955
Disease:Bubonic_plague 0.000903566
Disease:Dysentery 0.000903566
Disease:Gastroenteritis 0.00075851013
Endospores:No 0.000011644211
Endospores:Yes 0.00001263153
GC_Content_Range4:0-40 5.047e-1428213
GC_Content_Range4:40-60 0.000116490224
GC_Content_Range4:60-100 0.000033165145
GC_Content_Range7:30-40 4.504e-728166
GC_Content_Range7:50-60 2.543e-654107
GC_Content_Range7:60-70 0.000035661134
Genome_Size_Range5:0-2 1.360e-1710155
Genome_Size_Range5:2-4 7.994e-737197
Genome_Size_Range5:4-6 2.554e-16101184
Genome_Size_Range5:6-10 2.439e-103547
Genome_Size_Range9:1-2 1.261e-1210128
Genome_Size_Range9:2-3 7.796e-815120
Genome_Size_Range9:4-5 2.015e-65096
Genome_Size_Range9:5-6 1.352e-85188
Genome_Size_Range9:6-8 3.082e-82838
Genome_Size_Range9:8-10 0.004808379
Gram_Stain:Gram_Neg 0.0000361126333
Gram_Stain:Gram_Pos 0.009672137150
Habitat:Host-associated 0.000545648206
Habitat:Multiple 0.007717367178
Habitat:Terrestrial 0.00030561931
Motility:No 4.119e-724151
Motility:Yes 8.295e-8113267
Optimal_temp.:25 0.009490344
Oxygen_Req:Facultative 0.000152682201
Shape:Branched_filament 0.009490344
Shape:Coccus 2.203e-8682
Shape:Rod 7.547e-13147347
Shape:Sphere 0.0061765119
Shape:Spiral 0.0002385234



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 335
Effective number of orgs (counting one per cluster within 468 clusters): 264

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TTUR377629 ncbi Teredinibacter turnerae T79010
TPEN368408 ncbi Thermofilum pendens Hrk 51
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP94122 ncbi Shewanella sp. ANA-31
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSED425104 ncbi Shewanella sediminis HAW-EB31
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SPEA398579 ncbi Shewanella pealeana ATCC 7003451
SONE211586 ncbi Shewanella oneidensis MR-11
SMUT210007 ncbi Streptococcus mutans UA1591
SLOI323850 ncbi Shewanella loihica PV-41
SHAL458817 ncbi Shewanella halifaxensis HAW-EB41
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SGOR29390 Streptococcus gordonii Challis0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122281
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2171
SDEG203122 ncbi Saccharophagus degradans 2-400
SBAL402882 ncbi Shewanella baltica OS1851
SBAL399599 ncbi Shewanella baltica OS1951
SAUR273036 ncbi Staphylococcus aureus RF1221
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6391
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSTU379731 ncbi Pseudomonas stutzeri A15010
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PNAP365044 ncbi Polaromonas naphthalenivorans CJ20
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PING357804 ncbi Psychromonas ingrahamii 371
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1251
PGIN242619 ncbi Porphyromonas gingivalis W830
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PATL342610 ncbi Pseudoalteromonas atlantica T6c1
PAST100379 Onion yellows phytoplasma0
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM21
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197181
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSED399549 ncbi Metallosphaera sedula DSM 53481
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS101
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MEXT419610 ncbi Methylobacterium extorquens PA11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby1
LPNE297246 ncbi Legionella pneumophila Paris1
LPNE297245 ncbi Legionella pneumophila Lens1
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 11
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LMON265669 ncbi Listeria monocytogenes 4b F23651
LMON169963 ncbi Listeria monocytogenes EGD-e1
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112621
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LCHO395495 ncbi Leptothrix cholodnii SP-60
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM1
JSP375286 ncbi Janthinobacterium sp. Marseille0
ILOI283942 ncbi Idiomarina loihiensis L2TR1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HSOM228400 ncbi Haemophilus somnus 23361
HSOM205914 ncbi Haemophilus somnus 129PT1
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba1
GOXY290633 ncbi Gluconobacter oxydans 621H1
GKAU235909 ncbi Geobacillus kaustophilus HTA4261
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-001
FTUL418136 ncbi Francisella tularensis tularensis WY96-34181
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2001
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP106370 ncbi Frankia sp. CcI30
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250171
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSHI398580 ncbi Dinoroseobacter shibae DFL 121
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H1
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CKLU431943 ncbi Clostridium kluyveri DSM 5551
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB150
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP62928 ncbi Azoarcus sp. BH721
APHA212042 ncbi Anaplasma phagocytophilum HZ0
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACRY349163 ncbi Acidiphilium cryptum JF-50
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
AAUR290340 ncbi Arthrobacter aurescens TC11
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G6777   EG12628   EG12627   EG12304   EG10678   EG10677   
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
WSUC273121
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TTUR377629
TPEN368408 TPEN_1249
TPAL243276
TKOD69014 TK1801
TFUS269800
TERY203124
TELO197221
TDEN326298
TCRU317025
TACI273075
SWOL335541
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP94122 SHEWANA3_2653
SSP84588
SSP64471
SSP321332
SSP321327
SSP1148
SSP1131
SSOL273057
SSED425104 SSED_1549
SSAP342451 SSP1792
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SPEA398579 SPEA_2674
SONE211586 SO_1802
SMUT210007 SMU_258
SLOI323850 SHEW_2501
SHAL458817 SHAL_2761
SHAE279808 SH1968
SGOR29390
SEPI176280 SE_0682
SEPI176279 SERP0572
SELO269084
SDEN318161 SDEN_2485
SDEG203122
SBAL402882 SHEW185_1601
SBAL399599 SBAL195_1635
SAUR273036 SAB0854
SALA317655
SAGA211110 GBS0147
SAGA208435 SAG_0151
SAGA205921 SAK_0209
SACI330779 SACI_1035
RTYP257363
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RPAL316055
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PTHE370438
PSTU379731
PSP312153
PRUM264731
PPEN278197 PEPE_0399
PNAP365044
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PISL384616
PINT246198
PING357804 PING_2195
PHAL326442 PSHAA2054
PGIN242619
PDIS435591
PATL342610 PATL_3009
PAST100379
PARC259536
PAER178306 PAE1297
OTSU357244
NWIN323098
NSP387092
NSP103690
NSEN222891
NPHA348780 NP0766A
NOCE323261
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NEUT335283
NEUR228410 NE2480
NARO279238
MTUB419947
MTUB336982
MTHE349307
MTHE264732
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP189918 MKMS_4004
MSP164757 MJLS_3945
MSP164756 MMCS_3930
MSED399549 MSED_1049
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221 MMAR10_2606
MMAR368407
MMAR267377
MMAG342108
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MFLA265072
MEXT419610 MEXT_1280
MCAP340047
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAER449447
MAEO419665
MABS561007
LXYL281090
LWEL386043 LWE2210
LSAK314315 LSA0705
LREU557436
LPNE400673 LPC_2602
LPNE297246 LPP0747
LPNE297245 LPL0728
LPNE272624 LPG0692
LPLA220668 LP_1264
LMON265669 LMOF2365_2226
LMON169963 LMO2193
LMES203120
LLAC272623 L148976
LLAC272622 LACR_0393
LJOH257314
LINT363253 LI0988
LINT267671
LINT189518
LINN272626 LIN2297
LHEL405566 LHV_0219
LGAS324831
LDEL390333 LDB0284
LDEL321956 LBUL_0238
LCHO395495
LCAS321967 LSEI_2062
LBRE387344 LVIS_1766
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621 LBA0202
JSP375286
ILOI283942 IL0736
IHOS453591
HSOM228400 HSM_0940
HSOM205914 HS_0591
HPYL85963 JHP0287
HPYL357544 HPAG1_0304
HPY HP0302
HMOD498761
HHEP235279
HHAL349124
HBUT415426 HBUT_0606
HARS204773
HACI382638 HAC_0563
GOXY290633 GOX0655
GKAU235909 GK0814
GFOR411154
GBET391165
FTUL458234 FTA_1745
FTUL418136 FTW_0213
FTUL393011
FTUL351581 FTL_1648
FSUC59374
FSP106370
FPHI484022 FPHI_1029
FJOH376686
ERUM302409
ERUM254945
ELIT314225
ECHA205920
ECAN269484
DSHI398580 DSHI_0884
DNOD246195
DETH243164
CVES412965
CTRA471473
CTRA471472
CTET212717
CSUL444179
CSP78
CRUT413404
CPSY167879 CPS_3778
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPEL335992
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948 CMAQ_1327
CKLU431943 CKL_1052
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CJAP155077
CHUT269798
CHOM360107
CGLU196627
CFET360106
CFEL264202
CEFF196164
CDIP257309
CCUR360105
CCON360104
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBLO291272
CBLO203907
CAULO
CABO218497
BTUR314724
BTRI382640
BTHE226186
BSP107806
BQUI283165
BLON206672
BHER314723
BHEN283166
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BBUR224326
BBAC360095
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AVAR240292
AURANTIMONAS
ASP62977
ASP62928 AZO2061
APHA212042
AMAR329726
AMAR234826
ALAI441768
AFUL224325 AF_1770
AEHR187272
ADEH290397
ACRY349163
ABUT367737
ABOR393595
AAUR290340 AAUR_3876
AAEO224324


Organism features enriched in list (features available for 318 out of the 335 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.0068594417
Arrangment:Pairs 2.019e-737112
Disease:Pharyngitis 0.007524488
Disease:Wide_range_of_infections 0.00117381111
Disease:bronchitis_and_pneumonitis 0.007524488
Endospores:No 2.688e-6141211
Endospores:Yes 6.624e-11753
GC_Content_Range4:0-40 7.376e-11153213
GC_Content_Range4:40-60 0.0078332110224
GC_Content_Range4:60-100 6.837e-754145
GC_Content_Range7:0-30 0.00958373347
GC_Content_Range7:30-40 2.027e-8120166
GC_Content_Range7:50-60 0.000015439107
GC_Content_Range7:60-70 2.427e-650134
Genome_Size_Range5:0-2 2.318e-23135155
Genome_Size_Range5:2-4 0.0061567120197
Genome_Size_Range5:4-6 1.053e-1556184
Genome_Size_Range5:6-10 5.137e-9747
Genome_Size_Range9:0-1 4.621e-82727
Genome_Size_Range9:1-2 1.153e-15108128
Genome_Size_Range9:2-3 0.000231382120
Genome_Size_Range9:4-5 7.422e-92796
Genome_Size_Range9:5-6 5.499e-62988
Genome_Size_Range9:6-8 3.729e-7638
Genome_Size_Range9:8-10 0.008555419
Gram_Stain:Gram_Neg 0.0099325170333
Habitat:Host-associated 9.619e-8142206
Habitat:Multiple 0.000052376178
Habitat:Terrestrial 6.300e-6531
Motility:No 0.0000667102151
Motility:Yes 2.264e-8113267
Oxygen_Req:Facultative 0.000348491201
Oxygen_Req:Microaerophilic 0.00795011518
Shape:Coccus 0.00024655982
Shape:Rod 2.787e-13147347
Shape:Sphere 0.00013001819
Shape:Spiral 2.312e-73234



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 9
Effective number of orgs (counting one per cluster within 468 clusters): 9

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
HMUK485914 ncbi Halomicrobium mukohataei DSM 12286 0.00111025576
SMAR399550 ncbi Staphylothermus marinus F1 0.00144212735
TDEN243275 ncbi Treponema denticola ATCC 35405 0.00163585946
APER272557 ncbi Aeropyrum pernix K1 0.00223322985
HMAR272569 ncbi Haloarcula marismortui ATCC 43049 0.00273746476
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B1 0.00292076546
PHOR70601 ncbi Pyrococcus horikoshii OT3 0.00830403885
TLET416591 ncbi Thermotoga lettingae TMO 0.00975267996
PMOB403833 ncbi Petrotoga mobilis SJ95 0.00990058016


Names of the homologs of the genes in the group in each of these orgs
  G6777   EG12628   EG12627   EG12304   EG10678   EG10677   
HMUK485914 HMUK_0537HMUK_0537HMUK_0538HMUK_0538HMUK_0218HMUK_0538
SMAR399550 SMAR_0342SMAR_0342SMAR_0343SMAR_0342SMAR_1329
TDEN243275 TDE_1271TDE_1271TDE_1272TDE_1068TDE_1271TDE_1068
APER272557 APE0300APE1402APE1578APE1578APE1402
HMAR272569 RRNAC3295RRNAC2043RRNAC2042RRNAC2042RRNAC2227RRNAC2042
FNOD381764 FNOD_1565FNOD_1565FNOD_0193FNOD_0193FNOD_0192FNOD_0193
PHOR70601 PH1413PH1958PH1412PH1412PH1959
TLET416591 TLET_0644TLET_0644TLET_0648TLET_0648TLET_1527TLET_0645
PMOB403833 PMOB_1325PMOB_1579PMOB_1578PMOB_1578PMOB_1579PMOB_1578


Organism features enriched in list (features available for 9 out of the 9 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Endospores:No 0.00157278211
Habitat:Specialized 0.0000281653
Motility:Yes 0.00903608267
Oxygen_Req:Anaerobic 0.00123176102
Pathogenic_in:No 0.00263818226
Salinity:Extreme_halophilic 0.004193227
Temp._range:Hyperthermophilic 0.0001981423
Temp._range:Mesophilic 0.00186283473



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY-6196 (serine racemization)102840.4849
PWY-6374 (vibriobactin biosynthesis)77680.4598
GALACTITOLCAT-PWY (galactitol degradation)73650.4518
PWY0-823 (arginine degradation III (arginine decarboxylase/agmatinase pathway))2451390.4382
GLUTDEG-PWY (glutamate degradation II)1941190.4327
GLUCARDEG-PWY (D-glucarate degradation I)1521010.4280
XYLCAT-PWY (xylose degradation I)2171250.4116
PWY-561 (superpathway of glyoxylate cycle)1621030.4100
GLUTAMINDEG-PWY (glutamine degradation I)1911140.4042
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)2121220.4035



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG12628   EG12627   EG12304   EG10678   EG10677   
G67770.9996620.9996860.9995690.9995680.999503
EG126280.9998440.999670.9996810.999514
EG126270.9997170.9995070.999484
EG123040.9994690.999439
EG106780.999843
EG10677



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PAIRWISE BLAST SCORES:

  G6777   EG12628   EG12627   EG12304   EG10678   EG10677   
G67770.0f06.2e-58--1.6e-59-
EG12628-0.0f0--1.3e-78-
EG12627--0.0f0--3.3e-59
EG12304--2.1e-640.0f0--
EG10678-2.3e-76--0.0f0-
EG10677-----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- CPLX0-3970 (murein tripeptide ABC transporter) (degree of match pw to cand: 0.400, degree of match cand to pw: 0.333, average score: 1.000)
  Genes in pathway or complex:
             0.9924 0.9696 G6665 (mppA) G6665-MONOMER (periplasmic murein tripeptide binding protein)
   *in cand* 0.9997 0.9995 EG10678 (oppF) OPPF-MONOMER (OppF)
   *in cand* 0.9996 0.9994 EG10677 (oppD) OPPD-MONOMER (OppD)
             0.9976 0.9946 EG10676 (oppC) OPPC-MONOMER (OppC)
             0.9982 0.9962 EG10675 (oppB) OPPB-MONOMER (OppB)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9994 EG12304 (sapD) SAPD-MONOMER (SapD)
   *in cand* 0.9997 0.9995 EG12627 (dppD) DPPD-MONOMER (DppD)
   *in cand* 0.9997 0.9995 EG12628 (dppF) DPPF-MONOMER (DppF)
   *in cand* 0.9997 0.9995 G6777 (ddpF) YDDO-MONOMER (YddO)

- ABC-22-CPLX (oligopeptide ABC transporter) (degree of match pw to cand: 0.400, degree of match cand to pw: 0.333, average score: 1.000)
  Genes in pathway or complex:
             0.9930 0.9753 EG10674 (oppA) OPPA-MONOMER (OppA-oligopeptide ABC transporter substrate-binding)
             0.9982 0.9962 EG10675 (oppB) OPPB-MONOMER (OppB)
   *in cand* 0.9997 0.9995 EG10678 (oppF) OPPF-MONOMER (OppF)
   *in cand* 0.9996 0.9994 EG10677 (oppD) OPPD-MONOMER (OppD)
             0.9976 0.9946 EG10676 (oppC) OPPC-MONOMER (OppC)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9994 EG12304 (sapD) SAPD-MONOMER (SapD)
   *in cand* 0.9997 0.9995 EG12627 (dppD) DPPD-MONOMER (DppD)
   *in cand* 0.9997 0.9995 EG12628 (dppF) DPPF-MONOMER (DppF)
   *in cand* 0.9997 0.9995 G6777 (ddpF) YDDO-MONOMER (YddO)

- ABC-8-CPLX (dipeptide ABC transporter) (degree of match pw to cand: 0.400, degree of match cand to pw: 0.333, average score: 1.000)
  Genes in pathway or complex:
             0.9940 0.9701 EG10248 (dppA) DPPA-MONOMER (DppA)
             0.9880 0.9334 EG12626 (dppC) DPPC-MONOMER (DppC)
             0.9963 0.9825 EG12625 (dppB) DPPB-MONOMER (DppB)
   *in cand* 0.9997 0.9995 EG12628 (dppF) DPPF-MONOMER (DppF)
   *in cand* 0.9997 0.9995 EG12627 (dppD) DPPD-MONOMER (DppD)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9994 EG10677 (oppD) OPPD-MONOMER (OppD)
   *in cand* 0.9997 0.9995 EG10678 (oppF) OPPF-MONOMER (OppF)
   *in cand* 0.9996 0.9994 EG12304 (sapD) SAPD-MONOMER (SapD)
   *in cand* 0.9997 0.9995 G6777 (ddpF) YDDO-MONOMER (YddO)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10677 EG10678 (centered at EG10678)
G6777 (centered at G6777)
EG12304 (centered at EG12304)
EG12627 EG12628 (centered at EG12627)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6777   EG12628   EG12627   EG12304   EG10678   EG10677   
227/623244/623236/623243/623249/623269/623
AAUR290340:2:Tyes-----0
AAVE397945:0:Tyes110---
ABAC204669:0:Tyes---0-0
ABAU360910:0:Tyes01807110568
ACAU438753:0:Tyes9332829934280
ACEL351607:0:Tyes1---10
AFER243159:0:Tyes--00--
AFUL224325:0:Tyes--0---
AHYD196024:0:Tyes151471515150715716
AMET293826:0:Tyes839833001840
ANAE240017:0:Tyes0---00
AORE350688:0:Tyes110-10
APER272557:0:Tyes01166134913491166-
APLE416269:0:Tyes1107261-
APLE434271:0:Tno1106991-
ASAL382245:5:Tyes178201489782781
ASP1667:3:Tyes----00
ASP232721:2:Tyes110---
ASP62928:0:Tyes0-----
ASP76114:2:Tyes486-0-00
BABO262698:0:Tno0-141401
BABO262698:1:Tno-0----
BAMB339670:2:Tno----01
BAMB339670:3:Tno0011--
BAMB398577:2:Tno----01
BAMB398577:3:Tno0011--
BAMY326423:0:Tyes11001144
BANT260799:0:Tno035053504-3505237
BANT261594:2:Tno2333742374103742482
BANT568206:2:Tyes2541311131050213110
BANT592021:2:Tno2463939393803939499
BBAC264462:0:Tyes110-10
BBRO257310:0:Tyes005811-990
BCAN483179:0:Tno661-6766760662
BCAN483179:1:Tno-0----
BCEN331271:1:Tno----10
BCEN331271:2:Tno0011--
BCEN331272:2:Tyes----01
BCEN331272:3:Tyes0011--
BCER226900:1:Tyes6530652-0923
BCER288681:0:Tno2623677367603677528
BCER315749:1:Tyes006443150644
BCER405917:1:Tyes72009994540999
BCER572264:1:Tno59208593600859
BCLA66692:0:Tyes188013134031330
BHAL272558:0:Tyes371137113573573580
BJAP224911:0:Fyes3924371236923693710
BLIC279010:0:Tyes32932900494489
BMAL243160:0:Tno----10
BMAL243160:1:Tno1100--
BMAL320388:0:Tno----10
BMAL320388:1:Tno1100--
BMAL320389:0:Tyes----10
BMAL320389:1:Tyes0011--
BMEL224914:0:Tno17-0066816
BMEL224914:1:Tno-0----
BMEL359391:0:Tno0-141401
BMEL359391:1:Tno-0----
BOVI236:0:Tyes131---0-
BOVI236:1:Tyes--00--
BPAR257311:0:Tno005221-803
BPER257313:0:Tyes---0-0
BPET94624:0:Tyes110014773
BPSE272560:0:Tyes----01
BPSE272560:1:Tyes1100--
BPSE320372:0:Tno----01
BPSE320372:1:Tno1100--
BPSE320373:0:Tno----01
BPSE320373:1:Tno1100--
BPUM315750:0:Tyes1100133128
BSP36773:1:Tyes----10
BSP36773:2:Tyes0011--
BSP376:0:Tyes182961061161101828
BSUB:0:Tyes1100179174
BSUI204722:0:Tyes--6566560643
BSUI204722:1:Tyes-0----
BSUI470137:0:Tno--6386380625
BSUI470137:1:Tno-0----
BTHA271848:0:Tno----01
BTHA271848:1:Tno1100--
BTHU281309:1:Tno2523634363303634506
BTHU412694:1:Tno61208263880826
BVIE269482:6:Tyes----01
BVIE269482:7:Tyes0011--
BWEI315730:4:Tyes6620936411662936
BXEN266265:1:Tyes----10
CACE272562:1:Tyes348134810348734813482
CBEI290402:0:Tyes-01-01
CBOT36826:1:Tno----01
CBOT441770:0:Tyes----01
CBOT441771:0:Tno----01
CBOT441772:1:Tno-0--01
CBOT498213:1:Tno----01
CBOT508765:1:Tyes-0--01
CBOT515621:2:Tyes----01
CBOT536232:0:Tno----01
CCHL340177:0:Tyes--178-0-
CDES477974:0:Tyes-100--
CDIF272563:1:Tyes-01-01
CHYD246194:0:Tyes110010
CKLU431943:1:Tyes---0--
CKOR374847:0:Tyes1--010
CMAQ397948:0:Tyes---0--
CNOV386415:0:Tyes--0-10
CPER195102:1:Tyes-0--01
CPER195103:0:Tno-0--01
CPER289380:3:Tyes-0--01
CPHY357809:0:Tyes117571174-01174
CPSY167879:0:Tyes---0--
CSAL290398:0:Tyes0--1--
CSP501479:4:Fyes-0--0-
CSP501479:7:Fyes0-----
CSP501479:8:Fyes---0--
CTEP194439:0:Tyes976-0-9760
CVIO243365:0:Tyes110033233324
DARO159087:0:Tyes0-000-
DDES207559:0:Tyes001101
DGEO319795:1:Tyes001-01
DHAF138119:0:Tyes1431014211384
DOLE96561:0:Tyes0-110-
DPSY177439:2:Tyes1-0---
DRAD243230:3:Tyes-01-01
DRED349161:0:Tyes020602061206120602061
DSHI398580:5:Tyes---0--
DSP216389:0:Tyes-0--01
DSP255470:0:Tno-0--01
DVUL882:1:Tyes002397---
ECAR218491:0:Tyes345246424650345346
ECOL199310:0:Tno1260226035710
ECOL316407:0:Tno242248424834610
ECOL331111:6:Tno2682540254110010
ECOL362663:0:Tno1234723485610
ECOL364106:1:Tno12623262412410
ECOL405955:2:Tyes1241024119610
ECOL409438:6:Tyes279256125624910
ECOL413997:0:Tno216218121824610
ECOL439855:4:Tno021042105141203204
ECOL469008:0:Tno196310212421722173
ECOL481805:0:Tno200510216122082209
ECOL585034:0:Tno224239423955310
ECOL585035:0:Tno12544254511510
ECOL585055:0:Tno2692602260311110
ECOL585056:2:Tno193250125025310
ECOL585057:0:Tno167245924606310
ECOL585397:0:Tno1273127329910
ECOL83334:0:Tno3462739274012510
ECOLI:0:Tno250234223434910
ECOO157:0:Tno1872705270641610
EFAE226185:3:Tyes---2078-0
EFER585054:1:Tyes451872187304546
ESP42895:1:Tyes57810201021282129
FALN326424:0:Tyes001--1
FMAG334413:1:Tyes---01016-
FNOD381764:0:Tyes140014001101
FNUC190304:0:Tyes--0-10
FPHI484022:1:Tyes----0-
FRANT:0:Tno----10
FSP1855:0:Tyes--110-
FTUL351581:0:Tno-----0
FTUL393115:0:Tyes----10
FTUL401614:0:Tyes----01
FTUL418136:0:Tno-----0
FTUL458234:0:Tno-----0
GKAU235909:1:Tyes-----0
GMET269799:1:Tyes001101
GOXY290633:5:Tyes0-----
GSUL243231:0:Tyes-100-0
GTHE420246:1:Tyes027612762276202762
GURA351605:0:Tyes001101
GVIO251221:0:Tyes001101
HACI382638:1:Tyes-0----
HAUR316274:2:Tyes122782279227910
HBUT415426:0:Tyes---0--
HCHE349521:0:Tyes10810108210820410
HDUC233412:0:Tyes110804--
HINF281310:0:Tyes5959609801
HINF374930:0:Tyes38383709796
HINF71421:0:Tno64646551401
HMAR272569:8:Tyes11141001620
HMUK485914:1:Tyes3203203213210321
HNEP81032:0:Tyes----00
HPY:0:Tno-0----
HPYL357544:1:Tyes-0----
HPYL85963:0:Tno-0----
HSAL478009:4:Tyes1490121149-
HSOM205914:1:Tyes---0--
HSOM228400:0:Tno---0--
HSP64091:2:Tno1470-1147-
HWAL362976:1:Tyes9620-6962-
ILOI283942:0:Tyes---0--
JSP290400:1:Tyes24210941093109310
KPNE272620:2:Tyes101528952896010151016
KRAD266940:2:Fyes0--888889888
LACI272621:0:Tyes-----0
LBRE387344:2:Tyes-----0
LCAS321967:1:Tyes-----0
LDEL321956:0:Tyes-----0
LDEL390333:0:Tyes-----0
LHEL405566:0:Tyes-----0
LINN272626:1:Tno-----0
LINT363253:3:Tyes0-----
LLAC272622:5:Tyes-----0
LLAC272623:0:Tyes-----0
LMON169963:0:Tno-----0
LMON265669:0:Tyes-----0
LPLA220668:0:Tyes-----0
LPNE272624:0:Tno--0---
LPNE297245:1:Fno--0---
LPNE297246:1:Fyes--0---
LPNE400673:0:Tno--0---
LSAK314315:0:Tyes-----0
LSPH444177:1:Tyes380118873800018873824
LWEL386043:0:Tyes-----0
MACE188937:0:Tyes-0--0-
MAQU351348:2:Tyes1-0--0
MEXT419610:0:Tyes0-----
MLOT266835:2:Tyes480837583757101
MMAR394221:0:Tyes----0-
MPET420662:1:Tyes0-1---
MSED399549:0:Tyes---0--
MSME246196:0:Tyes001101
MSP164756:1:Tno---0--
MSP164757:0:Tno---0--
MSP189918:2:Tyes---0--
MSP266779:3:Tyes3089012338-3088
MSP400668:0:Tyes157101143614360
MSP409:2:Tyes-10021301100
MSUC221988:0:Tyes5195195200519-
MVAN350058:0:Tyes00580101
MXAN246197:0:Tyes001101
NEUR228410:0:Tyes-0----
NFAR247156:2:Tyes---0-0
NMUL323848:3:Tyes00----
NPHA348780:2:Tyes0-----
NSP35761:1:Tyes-1-010
OANT439375:5:Tyes257100--
OCAR504832:0:Tyes3089-3089030893089
OIHE221109:0:Tyes6190618618512517
PABY272844:0:Tyes608-609609-0
PACN267747:0:Tyes087--870
PAER178306:0:Tyes---0--
PAER208963:0:Tyes11001-
PAER208964:0:Tno11001-
PARS340102:0:Tyes--00--
PATL342610:0:Tyes---0--
PCAR338963:0:Tyes00--0-
PCRY335284:1:Tyes0011--
PENT384676:0:Tyes00110-
PFLU205922:0:Tyes00110-
PFLU216595:1:Tyes00110-
PFLU220664:0:Tyes31140110-
PFUR186497:0:Tyes1240112391239-0
PHAL326442:1:Tyes---0--
PHOR70601:0:Tyes158300-584
PING357804:0:Tyes---0--
PLUM243265:0:Fyes-10233822362237
PLUT319225:0:Tyes9729720-9720
PMEN399739:0:Tyes00110-
PMOB403833:0:Tyes0250249249250249
PMUL272843:1:Tyes11067516671668
PPEN278197:0:Tyes-----0
PPRO298386:2:Tyes117921793130310
PPUT160488:0:Tno00110-
PPUT351746:0:Tyes00110-
PPUT76869:0:Tno00110-
PSP117:0:Tyes001-01
PSP296591:2:Tyes36512144214321430-
PSP56811:2:Tyes151615161515151510
PSYR205918:0:Tyes0198819871987412275
PSYR223283:2:Tyes0-19611961--
RCAS383372:0:Tyes135230032
RDEN375451:4:Tyes0----1
RETL347834:5:Tyes110023382337
REUT264198:3:Tyes1-00-0
REUT381666:1:Tyes-0403-0-
REUT381666:2:Tyes1--0-0
RFER338969:1:Tyes511020102110210-
RLEG216596:3:Tyes0-----
RLEG216596:6:Tyes-10027602759
RMET266264:1:Tyes11509010
RPAL258594:0:Tyes3----0
RPAL316056:0:Tyes-01-01
RPAL316057:0:Tyes--00-0
RPAL316058:0:Tyes0-2886-2885-
RPOM246200:1:Tyes01207---1206
RRUB269796:1:Tyes158217681767176701
RSOL267608:1:Tyes991-0010
RSP101510:2:Fyes---101
RSP101510:3:Fyes1-0---
RSP357808:0:Tyes236930032
RSPH272943:3:Tyes-100--
RSPH349101:0:Tno1-001-
RSPH349101:1:Tno-0----
RSPH349102:4:Tyes-10---
RXYL266117:0:Tyes110214310
SACI330779:0:Tyes---0--
SACI56780:0:Tyes1100-0
SAGA205921:0:Tno-----0
SAGA208435:0:Tno-----0
SAGA211110:0:Tyes-----0
SARE391037:0:Tyes384138410384238413842
SAUR158878:1:Tno-4--40
SAUR158879:1:Tno-5--50
SAUR196620:0:Tno-5--50
SAUR273036:0:Tno-----0
SAUR282458:0:Tno-5--50
SAUR282459:0:Tno-5--50
SAUR359786:1:Tno-5--50
SAUR359787:1:Tno-5--50
SAUR367830:3:Tno-5--50
SAUR418127:0:Tyes-5--50
SAUR426430:0:Tno-5--50
SAUR93061:0:Fno-5--50
SAUR93062:1:Tno-5--50
SAVE227882:1:Fyes003842899383384
SBAL399599:3:Tyes---0--
SBAL402882:1:Tno---0--
SBOY300268:1:Tyes018701871187235236
SCO:2:Fyes36010010
SDEN318161:0:Tyes---0--
SDYS300267:1:Tyes288302930307210
SENT209261:0:Tno21882188218704546
SENT220341:0:Tno2608260826074510
SENT295319:0:Tno2259225922604610
SENT321314:2:Tno19001900190105051
SENT454169:2:Tno19831983198405152
SEPI176279:1:Tyes-----0
SEPI176280:0:Tno-----0
SERY405948:0:Tyes584584583-5840
SFLE198214:0:Tyes457222222234710
SFLE373384:0:Tno449216821674610
SFUM335543:0:Tyes0011-1
SGLO343509:3:Tyes135510149113551354
SHAE279808:0:Tyes-----0
SHAL458817:0:Tyes---0--
SHIGELLA:0:Tno1250425034510
SLAC55218:0:Fyes----00
SLAC55218:1:Fyes0011--
SLOI323850:0:Tyes---0--
SMAR399550:0:Tyes00-101010
SMED366394:1:Tyes649-0650548-
SMED366394:3:Tyes-0---2495
SMEL266834:0:Tyes--0384383-
SMEL266834:2:Tyes18920---2270
SMUT210007:0:Tyes-----0
SONE211586:1:Tyes---0--
SPEA398579:0:Tno---0--
SPRO399741:1:Tyes226210254326082609
SSAP342451:2:Tyes-----0
SSED425104:0:Tyes---0--
SSON300269:1:Tyes020992098190271272
SSP292414:1:Tyes--00--
SSP292414:2:Tyes0-----
SSP387093:0:Tyes11-0-0
SSP644076:2:Fyes--00--
SSP644076:3:Fyes-1--10
SSP644076:6:Fyes0-----
SSP94122:1:Tyes---0--
STHE292459:0:Tyes176211763017621763
STRO369723:0:Tyes358535850358635853586
STYP99287:1:Tyes19231923192404849
TDEN243275:0:Tyes20220220302020
TDEN292415:0:Tyes0-0---
TKOD69014:0:Tyes-----0
TLET416591:0:Tyes00448971
TMAR243274:0:Tyes55612273122612270
TPEN368408:1:Tyes0-----
TPET390874:0:Tno4674670129213
TPSE340099:0:Tyes001114511452
TROS309801:1:Tyes110010
TSP1755:0:Tyes-0--070
TSP28240:0:Tyes47565806596583
TTEN273068:0:Tyes182118211820182010
TTHE262724:1:Tyes110-10
TTHE300852:2:Tyes110-10
TVOL273116:0:Tyes0--1--
UMET351160:0:Tyes00-101
VCHO:0:Tyes11058610
VCHO345073:1:Tno11067010
VEIS391735:1:Tyes279536290363036293630
VFIS312309:1:Tyes---0--
VFIS312309:2:Tyes19330-933934
VPAR223926:1:Tyes1751751760925926
VVUL196600:2:Tyes11018510
VVUL216895:1:Tno1881881890188189
XAUT78245:1:Tyes1100-0
YENT393305:1:Tyes-191819190102103
YPES187410:5:Tno-1872187105655
YPES214092:3:Tno-1763176416710
YPES349746:2:Tno-1859185837801
YPES360102:3:Tyes-2314231516510
YPES377628:2:Tno-2031203216710
YPES386656:2:Tno-258325840159160
YPSE273123:2:Tno-1727172816510
YPSE349747:2:Tno-226222630175176



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