CANDIDATE ID: 143

CANDIDATE ID: 143

NUMBER OF GENES: 6
AVERAGE SCORE:    9.9968007e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    5.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7570 (ygiS) (b3020)
   Products of gene:
     - YGIS-MONOMER (predicted transporter subunit)

- G6665 (mppA) (b1329)
   Products of gene:
     - G6665-MONOMER (periplasmic murein tripeptide binding protein)
     - CPLX0-3970 (murein tripeptide ABC transporter)
       Reactions:
        ATP + L-Ala-D-Glu-meso-A2pm[periplasmic space] + H2O  ->  L-Ala-D-Glu-meso-A2pm[cytosol] + ADP + phosphate

- EG10677 (oppD) (b1246)
   Products of gene:
     - OPPD-MONOMER (OppD)
     - CPLX0-3970 (murein tripeptide ABC transporter)
       Reactions:
        ATP + L-Ala-D-Glu-meso-A2pm[periplasmic space] + H2O  ->  L-Ala-D-Glu-meso-A2pm[cytosol] + ADP + phosphate
     - ABC-22-CPLX (oligopeptide ABC transporter)
       Reactions:
        ATP + a peptide[periplasmic space] + H2O  ->  ADP + phosphate + a peptide[cytosol]

- EG10676 (oppC) (b1245)
   Products of gene:
     - OPPC-MONOMER (OppC)
     - CPLX0-3970 (murein tripeptide ABC transporter)
       Reactions:
        ATP + L-Ala-D-Glu-meso-A2pm[periplasmic space] + H2O  ->  L-Ala-D-Glu-meso-A2pm[cytosol] + ADP + phosphate
     - ABC-22-CPLX (oligopeptide ABC transporter)
       Reactions:
        ATP + a peptide[periplasmic space] + H2O  ->  ADP + phosphate + a peptide[cytosol]

- EG10675 (oppB) (b1244)
   Products of gene:
     - OPPB-MONOMER (OppB)
     - CPLX0-3970 (murein tripeptide ABC transporter)
       Reactions:
        ATP + L-Ala-D-Glu-meso-A2pm[periplasmic space] + H2O  ->  L-Ala-D-Glu-meso-A2pm[cytosol] + ADP + phosphate
     - ABC-22-CPLX (oligopeptide ABC transporter)
       Reactions:
        ATP + a peptide[periplasmic space] + H2O  ->  ADP + phosphate + a peptide[cytosol]

- EG10674 (oppA) (b1243)
   Products of gene:
     - OPPA-MONOMER (OppA-oligopeptide ABC transporter substrate-binding)
     - ABC-22-CPLX (oligopeptide ABC transporter)
       Reactions:
        ATP + a peptide[periplasmic space] + H2O  ->  ADP + phosphate + a peptide[cytosol]



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ORGANISMS CONTAINING AT LEAST 5 GENES FROM THE GROUP:

Total number of orgs: 163
Effective number of orgs (counting one per cluster within 468 clusters): 100

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317586
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329536
YPES386656 ncbi Yersinia pestis Pestoides F6
YPES377628 ncbi Yersinia pestis Nepal5166
YPES360102 ncbi Yersinia pestis Antiqua6
YPES349746 ncbi Yersinia pestis Angola6
YPES214092 ncbi Yersinia pestis CO926
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80816
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106336
VFIS312309 ncbi Vibrio fischeri ES1146
VCHO345073 ncbi Vibrio cholerae O3956
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169616
TTUR377629 ncbi Teredinibacter turnerae T79015
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB46
TSP1755 Thermoanaerobacter sp.6
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332236
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT26
SSP644076 Silicibacter sp. TrichCH4B6
SSON300269 ncbi Shigella sonnei Ss0466
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153055
SPRO399741 ncbi Serratia proteamaculans 5686
SMEL266834 ncbi Sinorhizobium meliloti 10216
SMED366394 ncbi Sinorhizobium medicae WSM4196
SLAC55218 Ruegeria lacuscaerulensis6
SHIGELLA ncbi Shigella flexneri 2a str. 2457T6
SGLO343509 ncbi Sodalis glossinidius morsitans6
SFLE373384 ncbi Shigella flexneri 5 str. 84016
SFLE198214 ncbi Shigella flexneri 2a str. 3016
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4766
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B676
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91506
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SDYS300267 ncbi Shigella dysenteriae Sd1976
SDEG203122 ncbi Saccharophagus degradans 2-405
SBOY300268 ncbi Shigella boydii Sb2276
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170255
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170295
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.15
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111706
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38416
RETL347834 ncbi Rhizobium etli CFN 426
PSP56811 Psychrobacter sp.6
PSP117 Pirellula sp.6
PPRO298386 ncbi Photobacterium profundum SS96
PMUL272843 ncbi Pasteurella multocida multocida Pm706
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO16
OIHE221109 ncbi Oceanobacillus iheyensis HTE8316
OANT439375 ncbi Ochrobactrum anthropi ATCC 491885
MSP409 Methylobacterium sp.6
MSP400668 ncbi Marinomonas sp. MWYL16
MSP266779 ncbi Chelativorans sp. BNC16
MMAR394221 ncbi Maricaulis maris MCS105
MLOT266835 ncbi Mesorhizobium loti MAFF3030996
MEXT419610 ncbi Methylobacterium extorquens PA15
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53346
LSPH444177 ncbi Lysinibacillus sphaericus C3-416
LSAK314315 ncbi Lactobacillus sakei sakei 23K6
LMON265669 ncbi Listeria monocytogenes 4b F23656
LMON169963 ncbi Listeria monocytogenes EGD-e6
LINN272626 ncbi Listeria innocua Clip112626
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3655
LACI272621 ncbi Lactobacillus acidophilus NCFM5
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785786
JSP290400 ncbi Jannaschia sp. CCS16
HSOM228400 ncbi Haemophilus somnus 23365
HNEP81032 Hyphomonas neptunium6
HINF71421 ncbi Haemophilus influenzae Rd KW206
HINF374930 ncbi Haemophilus influenzae PittEE6
HINF281310 ncbi Haemophilus influenzae 86-028NP6
HCHE349521 ncbi Hahella chejuensis KCTC 23966
GVIO251221 ncbi Gloeobacter violaceus PCC 74216
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-26
GKAU235909 ncbi Geobacillus kaustophilus HTA4265
FTUL401614 ncbi Francisella novicida U1126
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250175
ESP42895 Enterobacter sp.6
EFER585054 ncbi Escherichia fergusonii ATCC 354696
EFAE226185 ncbi Enterococcus faecalis V5836
ECOO157 ncbi Escherichia coli O157:H7 EDL9336
ECOL83334 Escherichia coli O157:H76
ECOL585397 ncbi Escherichia coli ED1a6
ECOL585057 ncbi Escherichia coli IAI396
ECOL585056 ncbi Escherichia coli UMN0266
ECOL585055 ncbi Escherichia coli 559896
ECOL585035 ncbi Escherichia coli S886
ECOL585034 ncbi Escherichia coli IAI16
ECOL481805 ncbi Escherichia coli ATCC 87396
ECOL469008 ncbi Escherichia coli BL21(DE3)6
ECOL439855 ncbi Escherichia coli SMS-3-56
ECOL413997 ncbi Escherichia coli B str. REL6066
ECOL409438 ncbi Escherichia coli SE116
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI896
ECOL362663 ncbi Escherichia coli 5366
ECOL331111 ncbi Escherichia coli E24377A6
ECOL316407 ncbi Escherichia coli K-12 substr. W31106
ECOL199310 ncbi Escherichia coli CFT0736
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10436
DNOD246195 ncbi Dichelobacter nodosus VCS1703A5
DHAF138119 ncbi Desulfitobacterium hafniense Y516
CVIO243365 ncbi Chromobacterium violaceum ATCC 124726
CSAL290398 ncbi Chromohalobacter salexigens DSM 30435
CPHY357809 ncbi Clostridium phytofermentans ISDg6
CNOV386415 ncbi Clostridium novyi NT5
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto6
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6576
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B6
CBOT498213 ncbi Clostridium botulinum B1 str. Okra6
CBOT441772 ncbi Clostridium botulinum F str. Langeland5
CBOT441771 ncbi Clostridium botulinum A str. Hall5
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193975
CBOT36826 Clostridium botulinum A5
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80526
CACE272562 ncbi Clostridium acetobutylicum ATCC 8246
BXEN266265 ncbi Burkholderia xenovorans LB4006
BWEI315730 ncbi Bacillus weihenstephanensis KBAB46
BVIE269482 ncbi Burkholderia vietnamiensis G46
BTUR314724 ncbi Borrelia turicatae 91E1355
BTHU412694 ncbi Bacillus thuringiensis Al Hakam6
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-276
BTHA271848 ncbi Burkholderia thailandensis E2646
BSUI470137 ncbi Brucella suis ATCC 234456
BSUI204722 ncbi Brucella suis 13306
BSUB ncbi Bacillus subtilis subtilis 1686
BSP36773 Burkholderia sp.6
BPUM315750 ncbi Bacillus pumilus SAFR-0326
BPSE320373 ncbi Burkholderia pseudomallei 6686
BPSE320372 ncbi Burkholderia pseudomallei 1710b6
BPSE272560 ncbi Burkholderia pseudomallei K962436
BOVI236 Brucella ovis5
BMEL359391 ncbi Brucella melitensis biovar Abortus 23086
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M6
BMAL320389 ncbi Burkholderia mallei NCTC 102476
BMAL320388 ncbi Burkholderia mallei SAVP16
BMAL243160 ncbi Burkholderia mallei ATCC 233446
BLIC279010 ncbi Bacillus licheniformis ATCC 145806
BHER314723 ncbi Borrelia hermsii DAH5
BGAR290434 ncbi Borrelia garinii PBi5
BCLA66692 ncbi Bacillus clausii KSM-K166
BCER572264 ncbi Bacillus cereus 03BB1026
BCER405917 Bacillus cereus W6
BCER315749 ncbi Bacillus cytotoxicus NVH 391-986
BCER288681 ncbi Bacillus cereus E33L6
BCER226900 ncbi Bacillus cereus ATCC 145796
BCEN331272 ncbi Burkholderia cenocepacia HI24246
BCEN331271 ncbi Burkholderia cenocepacia AU 10546
BCAN483179 ncbi Brucella canis ATCC 233656
BBUR224326 ncbi Borrelia burgdorferi B315
BANT592021 ncbi Bacillus anthracis A02486
BANT568206 ncbi Bacillus anthracis CDC 6846
BANT261594 ncbi Bacillus anthracis Ames Ancestor6
BANT260799 ncbi Bacillus anthracis Sterne6
BAMY326423 ncbi Bacillus amyloliquefaciens FZB426
BAMB398577 ncbi Burkholderia ambifaria MC40-66
BAMB339670 ncbi Burkholderia ambifaria AMMD6
BAFZ390236 ncbi Borrelia afzelii PKo5
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9416
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4496
AHYD196024 Aeromonas hydrophila dhakensis6


Names of the homologs of the genes in the group in each of these orgs
  G7570   G6665   EG10677   EG10676   EG10675   EG10674   
YPSE349747 YPSIP31758_1960YPSIP31758_1798YPSIP31758_1957YPSIP31758_1958YPSIP31758_1959YPSIP31758_1960
YPSE273123 YPTB2105YPTB2258YPTB2108YPTB2107YPTB2106YPTB2258
YPES386656 YPDSF_0954YPDSF_0806YPDSF_0951YPDSF_0952YPDSF_0953YPDSF_0954
YPES377628 YPN_1648YPN_1799YPN_1651YPN_1650YPN_1649YPN_1799
YPES360102 YPA_1539YPA_1688YPA_1542YPA_1541YPA_1540YPA_1688
YPES349746 YPANGOLA_A2163YPANGOLA_A2389YPANGOLA_A2160YPANGOLA_A2161YPANGOLA_A2162YPANGOLA_A2163
YPES214092 YPO2182YPO2339YPO2185YPO2184YPO2183YPO2339
YPES187410 Y2026Y1993Y2029Y2028Y2027Y2026
YENT393305 YE2233YE2233YE2230YE2231YE2232YE2234
VVUL216895 VV1_3082VV1_3082VV1_3079VV1_3080VV1_3081VV1_3082
VVUL196600 VV1203VV1203VV1206VV1205VV1204VV1203
VPAR223926 VP2091VP2091VP2088VP2089VP2090VP2091
VFIS312309 VF1597VF1597VF1594VF1595VF1596VF1597
VCHO345073 VC0395_A0609VC0395_A0609VC0395_A0612VC0395_A0611VC0395_A0610VC0395_A0609
VCHO VC1091VC1091VC1094VC1093VC1092VC1091
TTUR377629 TERTU_2106TERTU_2104TERTU_2102TERTU_2103TERTU_2104
TTEN273068 TTE0609TTE1552TTE0614TTE0613TTE0612TTE0609
TSP1755 TETH514_0623TETH514_0623TETH514_0620TETH514_0621TETH514_0622TETH514_0623
TPSE340099 TETH39_1689TETH39_1689TETH39_1686TETH39_1687TETH39_1688TETH39_1689
STYP99287 STM1746STM1679STM1743STM1744STM1745STM1746
SSP644076 SCH4B_3698SCH4B_3698SCH4B_3701SCH4B_3700SCH4B_3699SCH4B_3698
SSON300269 SSO_1937SSO_1804SSO_1934SSO_1935SSO_1936SSO_1937
SSAP342451 SSP1790SSP1790SSP1792SSP1793SSP1794
SPRO399741 SPRO_2701SPRO_2701SPRO_2698SPRO_2699SPRO_2700SPRO_2702
SMEL266834 SMB21196SMB21196SMC03125SMB21198SMB21197SMB21196
SMED366394 SMED_4685SMED_4685SMED_2856SMED_4687SMED_4686SMED_4685
SLAC55218 SL1157_A0134SL1157_A0134SL1157_A0137SL1157_A0136SL1157_A0135SL1157_A0134
SHIGELLA OPPAS1424OPPDOPPCOPPBS1424
SGLO343509 SG1373SG1497SG1376SG1375SG1374SG1373
SFLE373384 SFV_1255SFV_1831SFV_1258SFV_1257SFV_1256SFV_1255
SFLE198214 AAN42857.1AAN43403.1AAN42860.1AAN42859.1AAN42858.1AAN43403.1
SENT454169 SEHA_C1937SEHA_C1865SEHA_C1934SEHA_C1935SEHA_C1936SEHA_C1937
SENT321314 SCH_1742SCH_1672SCH_1739SCH_1740SCH_1741SCH_1742
SENT295319 SPA1131SPA1205SPA1134SPA1133SPA1132SPA1205
SENT220341 STY1304STY1384STY1308STY0890STY1305STY1304
SENT209261 T1658T1583T1655T2038T1657T1658
SDYS300267 SDY_3217SDY_1409SDY_1304SDY_1303SDY_1302SDY_1409
SDEG203122 SDE_2028SDE_2028SDE_2030SDE_2029SDE_2028
SBOY300268 SBO_1824SBO_1824SBO_1821SBO_1822SBO_1823SBO_1824
RSPH349102 RSPH17025_2890RSPH17025_2890RSPH17025_2888RSPH17025_2889RSPH17025_2890
RSPH349101 RSPH17029_0132RSPH17029_0132RSPH17029_0130RSPH17029_0131RSPH17029_0132
RSPH272943 RSP_1481RSP_1481RSP_1479RSP_1480RSP_1481
RRUB269796 RRU_A0592RRU_A0592RRU_A0589RRU_A0590RRU_A0591RRU_A0592
RLEG216596 RL3543RL3543RL3546RL3545RL3544RL3543
RETL347834 RHE_CH03096RHE_CH03096RHE_CH03099RHE_CH03098RHE_CH03097RHE_CH03096
PSP56811 PSYCPRWF_0021PSYCPRWF_0019PSYCPRWF_0024PSYCPRWF_0023PSYCPRWF_0022PSYCPRWF_0021
PSP117 RB12862RB12862RB12859RB12860RB12861RB12862
PPRO298386 PBPRA2014PBPRA1131PBPRA1134PBPRA1133PBPRA1132PBPRA2014
PMUL272843 PM1910PM1910PM1907PM1908PM1909PM1910
PLUM243265 PLU2493PLU2578PLU2490PLU2491PLU2492PLU2494
OIHE221109 OB2967OB2967OB2968OB2969OB2970OB2967
OANT439375 OANT_3599OANT_3599OANT_3601OANT_3600OANT_3599
MSP409 M446_5343M446_5343M446_2850M446_5345M446_5344M446_5343
MSP400668 MMWYL1_4404MMWYL1_4404MMWYL1_4407MMWYL1_4406MMWYL1_4405MMWYL1_4404
MSP266779 MESO_0038MESO_0038MESO_3135MESO_0036MESO_0037MESO_0038
MMAR394221 MMAR10_0865MMAR10_0865MMAR10_0862MMAR10_0861MMAR10_0865
MLOT266835 MLR7597MLR7597MLL0596MLR7599MLR7598MLR7597
MEXT419610 MEXT_4272MEXT_4272MEXT_4274MEXT_4273MEXT_4272
LWEL386043 LWE2213LWE2213LWE2210LWE2211LWE2212LWE2213
LSPH444177 BSPH_1480BSPH_1480BSPH_4261BSPH_1478BSPH_1479BSPH_1480
LSAK314315 LSA0702LSA0702LSA0705LSA0704LSA0703LSA0702
LMON265669 LMOF2365_2229LMOF2365_2229LMOF2365_2226LMOF2365_2227LMOF2365_2228LMOF2365_2229
LMON169963 LMO2196LMO2196LMO2193LMO2194LMO2195LMO2196
LINN272626 LIN2300LIN2300LIN2297LIN2298LIN2299LIN2300
LDEL321956 LBUL_0180LBUL_0180LBUL_0238LBUL_0236LBUL_0180
LACI272621 LBA0197LBA1958LBA0202LBA0200LBA0198
KPNE272620 GKPORF_B5432GKPORF_B1333GKPORF_B1330GKPORF_B1331GKPORF_B1332GKPORF_B1333
JSP290400 JANN_3050JANN_3050JANN_3053JANN_3052JANN_3051JANN_3050
HSOM228400 HSM_0696HSM_0696HSM_0694HSM_0695HSM_0696
HNEP81032 HNE_2874HNE_2874HNE_0172HNE_2880HNE_2879HNE_2874
HINF71421 HI_1124HI_1124HI_1121HI_1122HI_1123HI_1124
HINF374930 CGSHIEE_06425CGSHIEE_06425CGSHIEE_06440CGSHIEE_06435CGSHIEE_06430CGSHIEE_06425
HINF281310 NTHI1292NTHI1292NTHI1287NTHI1288NTHI1289NTHI1292
HCHE349521 HCH_01127HCH_03127HCH_01130HCH_00701HCH_01128HCH_01127
GVIO251221 GLL0948GLL4126GLL4123GLL4124GLL4125GLL4126
GTHE420246 GTNG_0691GTNG_0691GTNG_3282GTNG_0693GTNG_0692GTNG_0691
GKAU235909 GK0811GK0814GK0813GK0812GK0811
FTUL401614 FTN_1593FTN_1593FTN_1590FTN_1591FTN_1592FTN_1593
FPHI484022 FPHI_1024FPHI_1024FPHI_1026FPHI_1025FPHI_1024
ESP42895 ENT638_1483ENT638_2302ENT638_2299ENT638_2300ENT638_2301ENT638_2302
EFER585054 EFER_1712EFER_1712EFER_1709EFER_1710EFER_1711EFER_1712
EFAE226185 EF_3081EF_2725EF_0911EF_0910EF_0909EF_3041
ECOO157 Z4374Z2438OPPDOPPCOPPBZ2438
ECOL83334 ECS3904ECS1911ECS1746ECS1745ECS1744ECS1911
ECOL585397 ECED1_3679ECED1_1540ECED1_1398ECED1_1397ECED1_1396ECED1_1540
ECOL585057 ECIAI39_3514ECIAI39_1679ECIAI39_1581ECIAI39_1580ECIAI39_1579ECIAI39_1679
ECOL585056 ECUMN_3504ECUMN_1625ECUMN_1543ECUMN_1542ECUMN_1541ECUMN_1540
ECOL585055 EC55989_1340EC55989_1494EC55989_1343EC55989_1342EC55989_1341EC55989_1494
ECOL585035 ECS88_3408ECS88_1472ECS88_1314ECS88_1313ECS88_1312ECS88_1472
ECOL585034 ECIAI1_1262ECIAI1_1358ECIAI1_1265ECIAI1_1264ECIAI1_1263ECIAI1_1358
ECOL481805 ECOLC_0677ECOLC_2385ECOLC_2382ECOLC_2383ECOLC_2384ECOLC_2385
ECOL469008 ECBD_0719ECBD_2379ECBD_2376ECBD_2377ECBD_2378ECBD_2379
ECOL439855 ECSMS35_3311ECSMS35_1897ECSMS35_1894ECSMS35_1895ECSMS35_1896ECSMS35_1897
ECOL413997 ECB_02892ECB_01307ECB_01220ECB_01219ECB_01218ECB_01307
ECOL409438 ECSE_1291ECSE_1384ECSE_1294ECSE_1293ECSE_1292ECSE_1384
ECOL405955 APECO1_3399APECO1_483APECO1_361APECO1_360APECO1_359APECO1_483
ECOL364106 UTI89_C3447UTI89_C1601UTI89_C1444UTI89_C1443UTI89_C1442UTI89_C1601
ECOL362663 ECP_3109ECP_1290ECP_1293ECP_1292ECP_1291ECP_1290
ECOL331111 ECE24377A_1391ECE24377A_1542ECE24377A_1394ECE24377A_1393ECE24377A_1392ECE24377A_1542
ECOL316407 ECK3011:JW2988:B3020ECK1326:JW1322:B1329ECK1240:JW1238:B1246ECK1239:JW1237:B1245ECK1238:JW1236:B1244ECK1326:JW1322:B1329
ECOL199310 C3761C1803C1710C1709C1708C1803
ECAR218491 ECA1942ECA1992ECA2321ECA2322ECA2323ECA2325
DNOD246195 DNO_0452DNO_0452DNO_0455DNO_0454DNO_0452
DHAF138119 DSY1861DSY1861DSY1863DSY1864DSY1865DSY1861
CVIO243365 CV_4329CV_4329CV_4326CV_4327CV_4328CV_4329
CSAL290398 CSAL_2999CSAL_2999CSAL_3001CSAL_3000CSAL_2999
CPHY357809 CPHY_2000CPHY_2000CPHY_1998CPHY_1997CPHY_1996CPHY_2000
CNOV386415 NT01CX_2054NT01CX_2054NT01CX_1743NT01CX_1742NT01CX_1741
CBOT536232 CLM_3563CLM_3563CLM_3560CLM_3561CLM_3562CLM_3563
CBOT515621 CLJ_B3422CLJ_B3422CLJ_B3419CLJ_B3420CLJ_B3421CLJ_B3422
CBOT508765 CLL_A2488CLL_A2488CLL_A2490CLL_A2491CLL_A2492CLL_A2494
CBOT498213 CLD_1386CLD_1386CLD_1389CLD_1388CLD_1387CLD_1386
CBOT441772 CLI_3215CLI_3212CLI_3213CLI_3214CLI_3215
CBOT441771 CLC_3060CLC_3060CLC_3057CLC_3058CLC_3059
CBOT441770 CLB_3185CLB_3185CLB_3182CLB_3183CLB_3184
CBOT36826 CBO3150CBO3150CBO3147CBO3148CBO3149
CBEI290402 CBEI_4928CBEI_4928CBEI_4930CBEI_4931CBEI_4932CBEI_4928
CACE272562 CAC3634CAC3634CAC3636CAC3643CAC3644CAC3634
BXEN266265 BXE_B0757BXE_B0757BXE_B0754BXE_B0755BXE_B0756BXE_B0757
BWEI315730 BCERKBAB4_0174BCERKBAB4_0174BCERKBAB4_1092BCERKBAB4_1091BCERKBAB4_0170BCERKBAB4_3271
BVIE269482 BCEP1808_3706BCEP1808_3706BCEP1808_3703BCEP1808_3704BCEP1808_3705BCEP1808_3706
BTUR314724 BT0329BT0329BT0333BT0332BT0329
BTHU412694 BALH_0188BALH_0188BALH_1045BALH_1044BALH_0184BALH_3223
BTHU281309 BT9727_0177BT9727_3340BT9727_1086BT9727_1085BT9727_0173BT9727_3344
BTHA271848 BTH_II2219BTH_II2219BTH_II2216BTH_II2217BTH_II2218BTH_II2219
BSUI470137 BSUIS_B0533BSUIS_B0533BSUIS_B1075BSUIS_B0531BSUIS_B0532BSUIS_B0533
BSUI204722 BR_A0537BR_A0537BR_A1079BR_A0535BR_A0536BR_A0537
BSUB BSU11430BSU11430BSU12950BSU11450BSU11440BSU11430
BSP36773 BCEP18194_B0115BCEP18194_B0115BCEP18194_B0118BCEP18194_B0117BCEP18194_B0116BCEP18194_B0115
BPUM315750 BPUM_1188BPUM_1188BPUM_1187BPUM_1186BPUM_1185BPUM_1188
BPSE320373 BURPS668_A3019BURPS668_A3019BURPS668_A3016BURPS668_A3017BURPS668_A3018BURPS668_A3019
BPSE320372 BURPS1710B_B1484BURPS1710B_B1484BURPS1710B_B1481BURPS1710B_B1482BURPS1710B_B1483BURPS1710B_B1484
BPSE272560 BPSS2141BPSS2141BPSS2138BPSS2139BPSS2140BPSS2141
BOVI236 GBOORFA0517GBOORFA0517GBOORFA0515GBOORFA0516GBOORFA0517
BMEL359391 BAB2_0700BAB2_0700BAB2_1038BAB2_0702BAB2_0701BAB2_0700
BMEL224914 BMEII0735BMEII0735BMEII0222BMEII0737BMEII0736BMEII0735
BMAL320389 BMA10247_A0385BMA10247_A0385BMA10247_A0388BMA10247_A0387BMA10247_A0386BMA10247_A0385
BMAL320388 BMASAVP1_1534BMASAVP1_1534BMASAVP1_1537BMASAVP1_1536BMASAVP1_1535BMASAVP1_1534
BMAL243160 BMA_A0351BMA_A0351BMA_A0354BMA_A0353BMA_A0352BMA_A0351
BLIC279010 BL03323BL03323BL03769BL03325BL03324BL03323
BHER314723 BH0329BH0329BH0333BH0332BH0329
BGAR290434 BGB15BG0330BG0333BG0332BG0330
BCLA66692 ABC0780ABC0780ABC0567ABC0778ABC0777ABC0780
BCER572264 BCA_0233BCA_0233BCA_1226BCA_1225BCA_0229BCA_3678
BCER405917 BCE_0209BCE_0209BCE_1303BCE_1302BCE_0205BCE_0215
BCER315749 BCER98_0190BCER98_2242BCER98_0899BCER98_0898BCER98_0186BCER98_1532
BCER288681 BCE33L0180BCE33L3293BCE33L1080BCE33L1079BCE33L0176BCE33L3292
BCER226900 BC_0211BC_0211BC_1182BC_1181BC_0207BC_0216
BCEN331272 BCEN2424_5542BCEN2424_5542BCEN2424_5539BCEN2424_5540BCEN2424_5541BCEN2424_5542
BCEN331271 BCEN_5318BCEN_5318BCEN_5321BCEN_5320BCEN_5319BCEN_5318
BCAN483179 BCAN_B0537BCAN_B0537BCAN_B1102BCAN_B0535BCAN_B0536BCAN_B0537
BBUR224326 BB_B16BB_0329BB_0333BB_0332BB_0329
BANT592021 BAA_0222BAA_0222BAA_1270BAA_1269BAA_0218BAA_3670
BANT568206 BAMEG_0222BAMEG_0222BAMEG_3394BAMEG_3395BAMEG_0218BAMEG_0990
BANT261594 GBAA0189GBAA0189GBAA1194GBAA1193GBAA0185GBAA3644
BANT260799 BAS0190BAS0190BAS1104BAS1103BAS0186BAS3378
BAMY326423 RBAM_011430RBAM_011430RBAM_012800RBAM_011450RBAM_011440RBAM_011430
BAMB398577 BAMMC406_5413BAMMC406_5413BAMMC406_5410BAMMC406_5411BAMMC406_5412BAMMC406_5413
BAMB339670 BAMB_4866BAMB_4866BAMB_4863BAMB_4864BAMB_4865BAMB_4866
BAFZ390236 BAPKO_5014BAPKO_0338BAPKO_0341BAPKO_0340BAPKO_0338
BABO262698 BRUAB2_0685BRUAB2_0685BRUAB2_1019BRUAB2_0687BRUAB2_0686BRUAB2_0685
ASAL382245 ASA_1879ASA_3625ASA_1701ASA_1700ASA_1699ASA_3625
AHYD196024 AHA_2001AHA_2613AHA_2610AHA_2611AHA_2612AHA_2613


Organism features enriched in list (features available for 149 out of the 163 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00147183592
Arrangment:Pairs 0.000063645112
Arrangment:Singles 0.005908985286
Disease:Anthrax 0.004139344
Disease:Botulism 0.001036655
Disease:Brucellosis 0.001036655
Disease:Bubonic_plague 0.000258366
Disease:Dysentery 0.000258366
Disease:Gastroenteritis 0.00011711013
Disease:Urinary_tract_infection 0.004139344
Endospores:No 6.107e-730211
Endospores:Yes 1.369e-83253
GC_Content_Range4:40-60 0.000211775224
GC_Content_Range7:30-40 0.004444231166
GC_Content_Range7:50-60 0.000015845107
Genome_Size_Range5:0-2 2.899e-914155
Genome_Size_Range5:2-4 6.890e-727197
Genome_Size_Range5:4-6 1.815e-1891184
Genome_Size_Range9:1-2 5.806e-811128
Genome_Size_Range9:2-3 2.351e-89120
Genome_Size_Range9:4-5 2.213e-94996
Genome_Size_Range9:5-6 5.623e-74288
Gram_Stain:Gram_Neg 0.002142199333
Habitat:Aquatic 0.00099901291
Habitat:Multiple 0.000148663178
Habitat:Specialized 0.0015843553
Habitat:Terrestrial 0.00025441731
Motility:No 7.308e-1111151
Motility:Yes 6.882e-11102267
Optimal_temp.:25-35 0.0086866814
Oxygen_Req:Aerobic 0.003355135185
Oxygen_Req:Anaerobic 0.000776214102
Oxygen_Req:Facultative 2.818e-1185201
Pathogenic_in:Animal 0.00343882666
Pathogenic_in:Human 1.562e-883213
Pathogenic_in:No 0.000016737226
Shape:Coccus 1.136e-6582
Shape:Rod 4.617e-18131347
Temp._range:Hyperthermophilic 0.0080386123
Temp._range:Mesophilic 3.635e-7140473
Temp._range:Thermophilic 0.0074369335



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 366
Effective number of orgs (counting one per cluster within 468 clusters): 297

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
XAUT78245 ncbi Xanthobacter autotrophicus Py21
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-11
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP94122 ncbi Shewanella sp. ANA-30
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)1
SSP321327 ncbi Synechococcus sp. JA-3-3Ab1
SSP292414 ncbi Ruegeria sp. TM10400
SSP1148 ncbi Synechocystis sp. PCC 68031
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSED425104 ncbi Shewanella sediminis HAW-EB30
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SPEA398579 ncbi Shewanella pealeana ATCC 7003450
SONE211586 ncbi Shewanella oneidensis MR-10
SMAR399550 ncbi Staphylothermus marinus F11
SLOI323850 ncbi Shewanella loihica PV-40
SHAL458817 ncbi Shewanella halifaxensis HAW-EB40
SGOR29390 Streptococcus gordonii Challis0
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB1
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SELO269084 ncbi Synechococcus elongatus PCC 63011
SDEN318161 ncbi Shewanella denitrificans OS2170
SCO ncbi Streptomyces coelicolor A3(2)1
SBAL402882 ncbi Shewanella baltica OS1850
SBAL399599 ncbi Shewanella baltica OS1950
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP101510 ncbi Rhodococcus jostii RHA11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316058 ncbi Rhodopseudomonas palustris HaA21
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RMET266264 ncbi Ralstonia metallidurans CH341
RMAS416276 ncbi Rickettsia massiliae MTU50
RFER338969 ncbi Rhodoferax ferrireducens T1181
RFEL315456 ncbi Rickettsia felis URRWXCal20
REUT381666 ncbi Ralstonia eutropha H161
REUT264198 ncbi Ralstonia eutropha JMP1341
RDEN375451 ncbi Roseobacter denitrificans OCh 1141
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30000
PSTU379731 ncbi Pseudomonas stutzeri A15010
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP296591 ncbi Polaromonas sp. JS6660
PRUM264731 ncbi Prevotella ruminicola 230
PPUT76869 ncbi Pseudomonas putida GB-11
PPUT351746 ncbi Pseudomonas putida F11
PPUT160488 ncbi Pseudomonas putida KT24401
PNAP365044 ncbi Polaromonas naphthalenivorans CJ20
PMOB403833 ncbi Petrotoga mobilis SJ951
PMEN399739 ncbi Pseudomonas mendocina ymp0
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PING357804 ncbi Psychromonas ingrahamii 370
PHOR70601 ncbi Pyrococcus horikoshii OT31
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PFLU220664 ncbi Pseudomonas fluorescens Pf-51
PFLU216595 ncbi Pseudomonas fluorescens SBW251
PFLU205922 ncbi Pseudomonas fluorescens Pf0-10
PENT384676 ncbi Pseudomonas entomophila L481
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER208964 ncbi Pseudomonas aeruginosa PAO10
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP35761 Nocardioides sp.1
NSP103690 ncbi Nostoc sp. PCC 71201
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101521
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16221
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM10
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT1
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT81
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LCHO395495 ncbi Leptothrix cholodnii SP-60
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
JSP375286 ncbi Janthinobacterium sp. Marseille0
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM205914 ncbi Haemophilus somnus 129PT0
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GOXY290633 ncbi Gluconobacter oxydans 621H0
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-001
FTUL393115 ncbi Francisella tularensis tularensis FSC1981
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S41
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough1
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DRED349161 ncbi Desulfotomaculum reducens MI-11
DRAD243230 ncbi Deinococcus radiodurans R11
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DARO159087 ncbi Dechloromonas aromatica RCB0
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CSP501479 Citreicella sp. SE451
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDIF272563 ncbi Clostridium difficile 6301
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C1
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCAV227941 ncbi Chlamydophila caviae GPIC1
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB150
CABO218497 ncbi Chlamydophila abortus S26/31
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BLON206672 ncbi Bifidobacterium longum NCC27050
BHEN283166 ncbi Bartonella henselae Houston-10
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1001
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294131
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN11
ASP62977 ncbi Acinetobacter sp. ADP10
ASP62928 ncbi Azoarcus sp. BH720
ASP232721 ncbi Acidovorax sp. JS421
ASP1667 Arthrobacter sp.1
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL030
APLE416269 ncbi Actinobacillus pleuropneumoniae L200
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG11
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACRY349163 ncbi Acidiphilium cryptum JF-50
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
AAVE397945 ncbi Acidovorax citrulli AAC00-10
AAUR290340 ncbi Arthrobacter aurescens TC11
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G7570   G6665   EG10677   EG10676   EG10675   EG10674   
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
XAUT78245 XAUT_2764
WSUC273121
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TVOL273116
TPET390874 TPET_0422
TPEN368408
TPAL243276
TKOD69014 TK1801
TFUS269800
TERY203124
TELO197221 TLR1151
TDEN326298
TDEN292415
TCRU317025
TACI273075
SWOL335541
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP94122
SSP84588
SSP64471
SSP387093 SUN_0894
SSP321332 CYB_1186
SSP321327 CYA_0051
SSP292414
SSP1148 SLL0833
SSP1131
SSOL273057
SSED425104
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SPEA398579
SONE211586
SMAR399550 SMAR_1329
SLOI323850
SHAL458817
SGOR29390
SFUM335543 SFUM_3545
SERY405948 SACE_0260
SELO269084 SYC1073_D
SDEN318161
SCO SCO5120
SBAL402882
SBAL399599
SAVE227882 SAV3146
SALA317655
SACI330779
RTYP257363
RSP101510 RHA1_RO09045
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RPAL316058 RPB_1224
RPAL316055
RMET266264 RMET_4579
RMAS416276
RFER338969 RFER_0984
RFEL315456
REUT381666 H16_A1303
REUT264198 REUT_A1243
RDEN375451 RD1_2222
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PTHE370438
PSYR223283
PSTU379731
PSP312153
PSP296591
PRUM264731
PPUT76869 PPUTGB1_0924
PPUT351746 PPUT_0920
PPUT160488 PP_0881
PNAP365044
PMOB403833 PMOB_1578
PMEN399739
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PISL384616
PINT246198
PING357804
PHOR70601 PH1959
PHAL326442
PGIN242619
PFUR186497 PF0193
PFLU220664 PFL_0877
PFLU216595 PFLU0822
PFLU205922
PENT384676 PSEEN1056
PDIS435591
PCRY335284
PCAR338963
PATL342610
PAST100379
PARS340102
PARC259536
PAER208964
PAER208963
PAER178306
PACN267747 PPA2066
OTSU357244
NWIN323098
NSP387092
NSP35761 NOCA_2402
NSP103690 ALR1556
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NFAR247156 NFA1670
NEUT335283
NEUR228410
NARO279238
MXAN246197 MXAN_4665
MTUB419947 MRA_1290
MTUB336982 TBFG_11308
MTHE349307
MTHE264732
MTHE187420
MTBRV RV1282C
MTBCDC MT1319
MSYN262723
MSTA339860
MSP189918 MKMS_4003
MSP164757 MJLS_3944
MSP164756 MMCS_3929
MSED399549
MPUL272635
MPNE272634
MPET420662
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM3321
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MMAG342108
MLEP272631 ML1123
MLAB410358 MLAB_0719
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_0216
MGIL350054 MFLV_2260
MGEN243273
MFLO265311
MFLA265072 MFLA_1485
MCAP340047
MCAP243233
MBUR259564
MBOV410289 BCG_1341C
MBOV233413 MB1313C
MAVI243243 MAV_1432
MART243272
MAQU351348 MAQU_0452
MAER449447
MAEO419665
MABS561007 MAB_0427
LXYL281090
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LJOH257314
LINT363253 LI0250
LINT267671
LINT189518
LGAS324831
LCHO395495
LBOR355277
LBOR355276
LBIF456481
LBIF355278
KRAD266940 KRAD_2995
JSP375286
ILOI283942
IHOS453591
HWAL362976
HSP64091
HSOM205914
HSAL478009
HPYL85963
HPYL357544
HPY
HMOD498761
HMAR272569 RRNAC2042
HHEP235279
HHAL349124
HDUC233412
HBUT415426
HARS204773
HACI382638
GOXY290633
GFOR411154
GBET391165
FTUL458234 FTA_1745
FTUL393115 FTF0125
FTUL393011
FSUC59374
FSP1855
FSP106370
FRANT OPPD
FNOD381764 FNOD_0193
FJOH376686
FALN326424 FRAAL2819
ERUM302409
ERUM254945
ELIT314225
ECHA205920
ECAN269484
DVUL882 DVU_2462
DSHI398580
DRED349161 DRED_2451
DRAD243230 DR_1568
DPSY177439
DOLE96561
DETH243164
DARO159087
CVES412965
CTRA471473
CTRA471472
CTET212717
CSUL444179
CSP78
CSP501479 CSE45_4702
CRUT413404
CPSY167879
CPNE182082 CPB0202
CPNE138677 CPJ0199
CPNE115713 CPN0199
CPNE115711 CP_0568
CPEL335992
CMUR243161
CMIC443906 CMM_2183
CMIC31964
CMET456442
CMAQ397948
CKOR374847 KCR_0932
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CHUT269798
CHOM360107
CGLU196627
CFET360106
CFEL264202 CF0402
CEFF196164
CDIP257309
CDIF272563 CD2671
CDES477974 DAUD_0387
CCUR360105
CCON360104
CCAV227941 CCA_00602
CBUR434922
CBUR360115
CBUR227377
CBLO291272
CBLO203907
CAULO
CABO218497 CAB575
BTRI382640
BTHE226186
BSP107806
BQUI283165
BLON206672
BHEN283166
BFRA295405
BFRA272559
BCIC186490
BBAC360095
BBAC264462 BD2189
BAPH372461
BAPH198804
AYEL322098
AVAR240292 AVA_4163
AURANTIMONAS
ASP76114 EBA5654
ASP62977
ASP62928
ASP232721 AJS_0891
ASP1667 ARTH_4015
APLE434271
APLE416269
APHA212042
APER272557
ANAE240017 ANA_1686
AMAR329726
AMAR234826
ALAI441768
AFUL224325
AFER243159
AEHR187272
ADEH290397
ACRY349163
ABUT367737
ABOR393595
AAVE397945
AAUR290340 AAUR_3876
AAEO224324


Organism features enriched in list (features available for 346 out of the 366 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00071364192
Arrangment:Clusters 4.232e-6117
Arrangment:Pairs 6.817e-1136112
Disease:Gastroenteritis 0.0068953313
Disease:Wide_range_of_infections 0.00301271111
Endospores:No 0.0005228143211
Endospores:Yes 6.111e-81353
GC_Content_Range7:50-60 0.002237551107
Genome_Size_Range5:0-2 1.176e-15132155
Genome_Size_Range5:4-6 3.282e-1271184
Genome_Size_Range9:0-1 0.00057622427
Genome_Size_Range9:1-2 6.815e-12108128
Genome_Size_Range9:4-5 9.931e-63896
Genome_Size_Range9:5-6 4.089e-63388
Gram_Stain:Gram_Pos 4.625e-666150
Habitat:Aquatic 0.00086836791
Habitat:Multiple 0.000416488178
Habitat:Specialized 0.00984183953
Habitat:Terrestrial 0.00891211231
Motility:No 0.0069112101151
Motility:Yes 0.0034050144267
Optimal_temp.:25-35 0.0034949314
Optimal_temp.:30-37 1.750e-6118
Oxygen_Req:Aerobic 0.0001571129185
Oxygen_Req:Facultative 7.797e-1281201
Pathogenic_in:Animal 0.00291132966
Pathogenic_in:Human 8.023e-6102213
Shape:Rod 1.511e-8174347
Shape:Sphere 0.00055281819
Shape:Spiral 0.00647672734
Temp._range:Mesophilic 0.0000451263473



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 5
Effective number of orgs (counting one per cluster within 468 clusters): 4

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
BGAR290434 ncbi Borrelia garinii PBi 0.00053602245
BAFZ390236 ncbi Borrelia afzelii PKo 0.00059872295
BBUR224326 ncbi Borrelia burgdorferi B31 0.00063902325
BHER314723 ncbi Borrelia hermsii DAH 0.00075722405
BTUR314724 ncbi Borrelia turicatae 91E135 0.00083952455


Names of the homologs of the genes in the group in each of these orgs
  G7570   G6665   EG10677   EG10676   EG10675   EG10674   
BGAR290434 BGB15BG0330BG0333BG0332BG0330
BAFZ390236 BAPKO_5014BAPKO_0338BAPKO_0341BAPKO_0340BAPKO_0338
BBUR224326 BB_B16BB_0329BB_0333BB_0332BB_0329
BHER314723 BH0329BH0329BH0333BH0332BH0329
BTUR314724 BT0329BT0329BT0333BT0332BT0329


Organism features enriched in list (features available for 5 out of the 5 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Acrodermatitis_chronica_atrophicans 0.008576311
Disease:Lyme_disease 0.000058922
Disease:Tick-borne_relapsing_fever 0.000058922
Endospores:No 0.00602295211
GC_Content_Range4:0-40 0.00631675213
GC_Content_Range7:0-30 2.780e-6547
Genome_Size_Range5:0-2 0.00126625155
Genome_Size_Range9:0-1 0.0008180327
Habitat:Host-associated 0.00533615206
Pathogenic_in:Human 0.00631675213
Shape:Spiral 5.044e-7534



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GALACTITOLCAT-PWY (galactitol degradation)73670.5439
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))121850.4924
PWY-6374 (vibriobactin biosynthesis)77630.4755
GLUAMCAT-PWY (N-acetylglucosamine degradation I)3561530.4417
GLUTAMINDEG-PWY (glutamine degradation I)1911050.4358
PWY-6196 (serine racemization)102700.4275
GLUCUROCAT-PWY (β-D-glucuronide and D-glucuronate degradation)2081080.4149
PWY0-1314 (fructose degradation)2241130.4140
XYLCAT-PWY (xylose degradation I)2171100.4080
RIBOKIN-PWY (ribose degradation)2791280.4039
SERDEG-PWY (L-serine degradation)3491460.4024



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6665   EG10677   EG10676   EG10675   EG10674   
G75700.9997290.999490.9996890.9997780.999733
G66650.9994090.9996670.9997420.999764
EG106770.999730.9996940.99946
EG106760.9998660.999688
EG106750.999762
EG10674



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PAIRWISE BLAST SCORES:

  G7570   G6665   EG10677   EG10676   EG10675   EG10674   
G75700.0f01.1e-106---8.3e-118
G66656.3e-1040.0f0---0
EG10677--0.0f0---
EG10676---0.0f0--
EG10675----0.0f0-
EG106742.0e-1160---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- CPLX0-3970 (murein tripeptide ABC transporter) (degree of match pw to cand: 0.800, degree of match cand to pw: 0.667, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9997 0.9994 G6665 (mppA) G6665-MONOMER (periplasmic murein tripeptide binding protein)
             0.9995 0.9993 EG10678 (oppF) OPPF-MONOMER (OppF)
   *in cand* 0.9996 0.9994 EG10677 (oppD) OPPD-MONOMER (OppD)
   *in cand* 0.9998 0.9997 EG10676 (oppC) OPPC-MONOMER (OppC)
   *in cand* 0.9998 0.9997 EG10675 (oppB) OPPB-MONOMER (OppB)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9995 EG10674 (oppA) OPPA-MONOMER (OppA-oligopeptide ABC transporter substrate-binding)
   *in cand* 0.9997 0.9995 G7570 (ygiS) YGIS-MONOMER (predicted transporter subunit)

- ABC-22-CPLX (oligopeptide ABC transporter) (degree of match pw to cand: 0.800, degree of match cand to pw: 0.667, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9997 0.9995 EG10674 (oppA) OPPA-MONOMER (OppA-oligopeptide ABC transporter substrate-binding)
   *in cand* 0.9998 0.9997 EG10675 (oppB) OPPB-MONOMER (OppB)
             0.9995 0.9993 EG10678 (oppF) OPPF-MONOMER (OppF)
   *in cand* 0.9996 0.9994 EG10677 (oppD) OPPD-MONOMER (OppD)
   *in cand* 0.9998 0.9997 EG10676 (oppC) OPPC-MONOMER (OppC)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9994 G6665 (mppA) G6665-MONOMER (periplasmic murein tripeptide binding protein)
   *in cand* 0.9997 0.9995 G7570 (ygiS) YGIS-MONOMER (predicted transporter subunit)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10674 EG10675 EG10676 EG10677 (centered at EG10676)
G6665 (centered at G6665)
G7570 (centered at G7570)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7570   G6665   EG10677   EG10676   EG10675   EG10674   
181/623168/623269/623256/623263/623164/623
AAUR290340:2:Tyes--0---
ABAC204669:0:Tyes--0-3468-
ABAU360910:0:Tyes--4050484-
ACAU438753:0:Tyes--122601322-
ACEL351607:0:Tyes--10--
AHYD196024:0:Tyes0591588589590591
AMET293826:0:Tyes--17560914-
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ASP232721:2:Tyes----0-
ASP76114:2:Tyes--0---
AVAR240292:3:Tyes---0--
BABO262698:0:Tno00308210
BAFZ390236:0:Tyes0-----
BAFZ390236:2:Fyes-0-320
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BBAC264462:0:Tyes--0---
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BBUR224326:21:Fno-0-430
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BGAR290434:0:Tyes0-----
BGAR290434:2:Fyes-0-320
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BPSE272560:0:Tyes330123
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CMIC443906:2:Tyes---0--
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ESP42895:1:Tyes0814811812813814
FALN326424:0:Tyes--0---
FMAG334413:1:Tyes---012
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FTUL401614:0:Tyes330123
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GMET269799:1:Tyes--0385--
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GTHE420246:1:Tyes002550210
GURA351605:0:Tyes--0339--
GVIO251221:0:Tyes032183215321632173218
HAUR316274:2:Tyes1024-2-0-
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HMUK485914:1:Tyes--01058--
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HSOM228400:0:Tno22-012
JSP290400:1:Tyes003210
KPNE272620:2:Tyes400130123
KRAD266940:2:Fyes--0---
LACI272621:0:Tyes017165-31
LBRE387344:2:Tyes394-012-
LCAS321967:1:Tyes3-012-
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LINN272626:1:Tno330123
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LLAC272622:5:Tyes0-321-
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LSAK314315:0:Tyes003210
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LWEL386043:0:Tyes330123
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MACE188937:0:Tyes---9090-
MAQU351348:2:Tyes--0---
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MBAR269797:1:Tyes---01-
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MGIL350054:3:Tyes---0--
MHUN323259:0:Tyes----0-
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MLOT266835:2:Tyes555455540555655555554
MMAR394221:0:Tyes44-104
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MSME246196:0:Tyes--04317--
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MSP266779:3:Tyes223116012
MSP400668:0:Tyes003210
MSP409:2:Tyes242224220242424232422
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MTBCDC:0:Tno---0--
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MVAN350058:0:Tyes--03961--
MXAN246197:0:Tyes--0---
NFAR247156:2:Tyes--0---
NSP103690:6:Tyes---0--
NSP35761:1:Tyes--0---
OANT439375:4:Tyes00-210
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OIHE221109:0:Tyes001230
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PACN267747:0:Tyes--0---
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PFUR186497:0:Tyes--0---
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RDEN375451:4:Tyes--0---
RETL347834:5:Tyes003210
REUT264198:3:Tyes--0---
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RFER338969:1:Tyes----0-
RLEG216596:6:Tyes003210
RMET266264:1:Tyes--0---
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SAVE227882:1:Fyes--0---
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SCO:2:Fyes--0---
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XAUT78245:1:Tyes--0---
YENT393305:1:Tyes330124
YPES187410:5:Tno33036353433
YPES214092:3:Tno0151321151
YPES349746:2:Tno32240123
YPES360102:3:Tyes0149321149
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YPES386656:2:Tno1420139140141142
YPSE273123:2:Tno0151321151
YPSE349747:2:Tno1620159160161162



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