CANDIDATE ID: 163

CANDIDATE ID: 163

NUMBER OF GENES: 6
AVERAGE SCORE:    9.9956900e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7028 (flhB) (b1880)
   Products of gene:
     - G7028-MONOMER (flagellar biosynthesis protein FlhB)
     - CPLX0-7451 (Flagellar Export Apparatus)
     - CPLX0-7452 (Flagellum)

- G370 (flhA) (b1879)
   Products of gene:
     - G370-MONOMER (flagellar biosynthesis protein FlhA)
     - CPLX0-7451 (Flagellar Export Apparatus)
     - CPLX0-7452 (Flagellum)

- EG11355 (fliA) (b1922)
   Products of gene:
     - EG11355-MONOMER (RNA polymerase, sigma 28 (sigma F) factor)
     - CPLX0-222 (RNA polymerase sigma 28)

- EG10151 (cheZ) (b1881)
   Products of gene:
     - CHEZ-MONOMER (CheZ)
     - CHEZ-CPLX (CheZ)

- EG10150 (cheY) (b1882)
   Products of gene:
     - CHEY-MONOMER (chemotaxis regulator transmitting signal to flagellar motor component)
     - MONOMER0-4170 (CheY-acetylated)
     - PHOSPHO-CHEY (CheY-Pasp)

- EG10146 (cheA) (b1888)
   Products of gene:
     - CHEA-SMALL (CheA(S))
     - TSR-GLN (Tsrgln)
     - TSR-GLU (Tsrglu)
     - TSR-GLUME (Tsrglu-Me)
     - TRG-GLN (Trggln)
     - TRG-GLU (Trgglu)
     - TRG-GLUME (Trgglu-Me)
     - TAP-GLN (Tapgln)
     - TAP-GLU (Tapglu)
     - TAP-GLUME (Tapglu-Me)
     - TAR-GLN (Targln)
     - TAR-GLU (Targlu)
     - TAR-GLUME (Targlu-Me)
       Regulatees:
     - PROTEIN-CHEAP (CheA-Phis)
     - PROTEIN-CHEA (CheA(L) monomer)
     - CHEA-CPLX (CheA(L))
     - TAR-CPLX (MCP-II)
     - TAP-CPLX (MCP-IV)
     - TRG-CPLX (MCP-III)
     - TSR-CPLX (MCP-I)



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ORGANISMS CONTAINING AT LEAST 5 GENES FROM THE GROUP:

Total number of orgs: 192
Effective number of orgs (counting one per cluster within 468 clusters): 126

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM45
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317586
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329536
YPES386656 ncbi Yersinia pestis Pestoides F6
YPES377628 ncbi Yersinia pestis Nepal5166
YPES360102 ncbi Yersinia pestis Antiqua6
YPES349746 ncbi Yersinia pestis Angola6
YPES214092 ncbi Yersinia pestis CO926
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80816
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A5
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110185
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103315
XCAM487884 Xanthomonas campestris pv. paulliniae5
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-105
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80045
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339135
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3065
WSUC273121 ncbi Wolinella succinogenes DSM 17405
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106336
VFIS312309 ncbi Vibrio fischeri ES1146
VEIS391735 ncbi Verminephrobacter eiseniae EF01-26
VCHO345073 ncbi Vibrio cholerae O3956
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169616
TTUR377629 ncbi Teredinibacter turnerae T79016
TLET416591 ncbi Thermotoga lettingae TMO5
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12515
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252596
TCRU317025 ncbi Thiomicrospira crunogena XCL-26
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT26
SSP94122 ncbi Shewanella sp. ANA-36
SSON300269 ncbi Shigella sonnei Ss0466
SSED425104 ncbi Shewanella sediminis HAW-EB36
SPRO399741 ncbi Serratia proteamaculans 5686
SPEA398579 ncbi Shewanella pealeana ATCC 7003456
SONE211586 ncbi Shewanella oneidensis MR-16
SLOI323850 ncbi Shewanella loihica PV-46
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SHAL458817 ncbi Shewanella halifaxensis HAW-EB46
SFLE373384 ncbi Shigella flexneri 5 str. 84016
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4766
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B676
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91506
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SDEN318161 ncbi Shewanella denitrificans OS2176
SDEG203122 ncbi Saccharophagus degradans 2-406
SBOY300268 ncbi Shigella boydii Sb2275
SBAL402882 ncbi Shewanella baltica OS1856
SBAL399599 ncbi Shewanella baltica OS1956
SACI56780 ncbi Syntrophus aciditrophicus SB5
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170255
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170295
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.15
RSOL267608 ncbi Ralstonia solanacearum GMI10006
RMET266264 ncbi Ralstonia metallidurans CH346
RFER338969 ncbi Rhodoferax ferrireducens T1186
REUT381666 ncbi Ralstonia eutropha H166
REUT264198 ncbi Ralstonia eutropha JMP1346
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30006
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a6
PSTU379731 ncbi Pseudomonas stutzeri A15016
PPUT76869 ncbi Pseudomonas putida GB-16
PPUT351746 ncbi Pseudomonas putida F16
PPUT160488 ncbi Pseudomonas putida KT24406
PPRO298386 ncbi Photobacterium profundum SS96
PMEN399739 ncbi Pseudomonas mendocina ymp6
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO16
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1256
PFLU220664 ncbi Pseudomonas fluorescens Pf-56
PFLU216595 ncbi Pseudomonas fluorescens SBW256
PFLU205922 ncbi Pseudomonas fluorescens Pf0-16
PENT384676 ncbi Pseudomonas entomophila L486
PCAR338963 ncbi Pelobacter carbinolicus DSM 23805
PATL342610 ncbi Pseudoalteromonas atlantica T6c6
PAER208964 ncbi Pseudomonas aeruginosa PAO16
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA146
NSP387092 ncbi Nitratiruptor sp. SB155-25
NSP35761 Nocardioides sp.5
NEUT335283 ncbi Nitrosomonas eutropha C916
NEUR228410 ncbi Nitrosomonas europaea ATCC 197186
MXAN246197 ncbi Myxococcus xanthus DK 16225
MSP400668 ncbi Marinomonas sp. MWYL16
MPET420662 ncbi Methylibium petroleiphilum PM16
MFLA265072 ncbi Methylobacillus flagellatus KT6
MAQU351348 ncbi Marinobacter aquaeolei VT86
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1305
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566015
LCHO395495 ncbi Leptothrix cholodnii SP-66
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1975
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5505
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)5
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)5
KRAD266940 ncbi Kineococcus radiotolerans SRS302165
JSP375286 ncbi Janthinobacterium sp. Marseille6
ILOI283942 ncbi Idiomarina loihiensis L2TR6
HPYL85963 ncbi Helicobacter pylori J995
HPYL357544 ncbi Helicobacter pylori HPAG15
HPY ncbi Helicobacter pylori 266955
HHEP235279 ncbi Helicobacter hepaticus ATCC 514495
HHAL349124 ncbi Halorhodospira halophila SL15
HCHE349521 ncbi Hahella chejuensis KCTC 23966
HARS204773 ncbi Herminiimonas arsenicoxydans6
HACI382638 ncbi Helicobacter acinonychis Sheeba5
GURA351605 ncbi Geobacter uraniireducens Rf45
GSUL243231 ncbi Geobacter sulfurreducens PCA5
GMET269799 ncbi Geobacter metallireducens GS-155
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B15
ESP42895 Enterobacter sp.6
EFER585054 ncbi Escherichia fergusonii ATCC 354696
ECOO157 ncbi Escherichia coli O157:H7 EDL9336
ECOL83334 Escherichia coli O157:H76
ECOL585397 ncbi Escherichia coli ED1a6
ECOL585057 ncbi Escherichia coli IAI396
ECOL585056 ncbi Escherichia coli UMN0266
ECOL585055 ncbi Escherichia coli 559896
ECOL585035 ncbi Escherichia coli S886
ECOL585034 ncbi Escherichia coli IAI16
ECOL481805 ncbi Escherichia coli ATCC 87396
ECOL469008 ncbi Escherichia coli BL21(DE3)6
ECOL439855 ncbi Escherichia coli SMS-3-56
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE116
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI896
ECOL362663 ncbi Escherichia coli 5366
ECOL331111 ncbi Escherichia coli E24377A6
ECOL316407 ncbi Escherichia coli K-12 substr. W31106
ECOL199310 ncbi Escherichia coli CFT0736
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10436
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough5
DPSY177439 ncbi Desulfotalea psychrophila LSv545
DHAF138119 ncbi Desulfitobacterium hafniense Y515
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G205
DARO159087 ncbi Dechloromonas aromatica RCB6
CVIO243365 ncbi Chromobacterium violaceum ATCC 124726
CSAL290398 ncbi Chromohalobacter salexigens DSM 30436
CPSY167879 ncbi Colwellia psychrerythraea 34H6
CKLU431943 ncbi Clostridium kluyveri DSM 5555
CJEJ407148 ncbi Campylobacter jejuni jejuni 811165
CJEJ360109 ncbi Campylobacter jejuni doylei 269.975
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1765
CJEJ195099 ncbi Campylobacter jejuni RM12215
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111685
CJAP155077 Cellvibrio japonicus6
CFET360106 ncbi Campylobacter fetus fetus 82-405
CCUR360105 ncbi Campylobacter curvus 525.925
CCON360104 ncbi Campylobacter concisus 138265
BWEI315730 ncbi Bacillus weihenstephanensis KBAB45
BVIE269482 ncbi Burkholderia vietnamiensis G46
BTHU412694 ncbi Bacillus thuringiensis Al Hakam5
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-275
BTHA271848 ncbi Burkholderia thailandensis E2646
BSUB ncbi Bacillus subtilis subtilis 1685
BSP36773 Burkholderia sp.6
BPSE320373 ncbi Burkholderia pseudomallei 6686
BPSE320372 ncbi Burkholderia pseudomallei 1710b6
BPSE272560 ncbi Burkholderia pseudomallei K962436
BPET94624 Bordetella petrii6
BPER257313 ncbi Bordetella pertussis Tohama I6
BPAR257311 ncbi Bordetella parapertussis 128226
BMAL320389 ncbi Burkholderia mallei NCTC 102476
BMAL320388 ncbi Burkholderia mallei SAVP16
BMAL243160 ncbi Burkholderia mallei ATCC 233446
BLIC279010 ncbi Bacillus licheniformis ATCC 145805
BHAL272558 ncbi Bacillus halodurans C-1255
BCER572264 ncbi Bacillus cereus 03BB1025
BCER288681 ncbi Bacillus cereus E33L5
BCEN331272 ncbi Burkholderia cenocepacia HI24246
BCEN331271 ncbi Burkholderia cenocepacia AU 10546
BBRO257310 ncbi Bordetella bronchiseptica RB506
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1005
BANT592021 ncbi Bacillus anthracis A02485
BANT568206 ncbi Bacillus anthracis CDC 6845
BANT260799 ncbi Bacillus anthracis Sterne5
BAMY326423 ncbi Bacillus amyloliquefaciens FZB425
BAMB398577 ncbi Burkholderia ambifaria MC40-66
BAMB339670 ncbi Burkholderia ambifaria AMMD6
ASP62928 ncbi Azoarcus sp. BH726
ASP232721 ncbi Acidovorax sp. JS426
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4496
AMET293826 ncbi Alkaliphilus metalliredigens QYMF5
AHYD196024 Aeromonas hydrophila dhakensis6
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-16
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C5
ACEL351607 ncbi Acidothermus cellulolyticus 11B5
ABAU360910 ncbi Bordetella avium 197N6
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3455
AAVE397945 ncbi Acidovorax citrulli AAC00-16


Names of the homologs of the genes in the group in each of these orgs
  G7028   G370   EG11355   EG10151   EG10150   EG10146   
ZMOB264203 ZMO0650ZMO0624ZMO0626ZMO0079ZMO0083
YPSE349747 YPSIP31758_2334YPSIP31758_2333YPSIP31758_2280YPSIP31758_1647YPSIP31758_1646YPSIP31758_1638
YPSE273123 YPTB1665YPTB1666YPTB1715YPTB2396YPTB2397YPTB2405
YPES386656 YPDSF_1334YPDSF_1333YPDSF_1283YPDSF_1767YPDSF_1768YPDSF_1781
YPES377628 YPN_2334YPN_2333YPN_2280YPN_1950YPN_1951YPN_1964
YPES360102 YPA_1164YPA_1165YPA_1219YPA_1841YPA_1842YPA_1855
YPES349746 YPANGOLA_A0242YPANGOLA_A0243YPANGOLA_A2027YPANGOLA_A3521YPANGOLA_A3520YPANGOLA_A2825
YPES214092 YPO1790YPO1791YPO1843YPO1681YPO1680YPO1666
YPES187410 Y2519Y2518Y2464Y1843Y1842Y1827
YENT393305 YE2567YE2566YE2519YE2569YE2570YE2577
XORY360094 XOOORF_2852XOOORF_2853XOOORF_2857XOOORF_2858XOOORF_1847
XORY342109 XOO2476XOO2477XOO2480XOO2481XOO2693
XORY291331 XOO2617XOO2618XOO2621XOO2622XOO2836
XCAM487884 XCC-B100_2206XCC-B100_2205XCC-B100_2201XCC-B100_2200XCC-B100_2173
XCAM316273 XCAORF_2177XCAORF_2176XCAORF_2171XCAORF_2170XCAORF_2140
XCAM314565 XC_2277XC_2278XC_2281XC_2282XC_2303
XCAM190485 XCC1910XCC1909XCC1906XCC1905XCC1885
XAXO190486 XAC1937XAC1936XAC1933XAC1932XAC1903
WSUC273121 WS2009WS1053WS1639WS0619WS2083
VVUL216895 VV1_1948VV1_1949VV1_1952VV1_1954VV1_1953VV2_1168
VVUL196600 VV2468VV2467VV2464VV2462VV2463VVA1691
VPAR223926 VP2236VP2235VP2232VP2230VP2231VP2229
VFIS312309 VF1839VF1837VF1834VF1832VF1833VF1831
VEIS391735 VEIS_0932VEIS_0931VEIS_0929VEIS_4424VEIS_4423VEIS_2176
VCHO345073 VC0395_A1702VC0395_A1657VC0395_A1654VC0395_A1652VC0395_A1653VC0395_0148
VCHO VC2120VC2069VC2066VC2064VC2065VCA1095
TTUR377629 TERTU_1356TERTU_1360TERTU_1363TERTU_1366TERTU_1365TERTU_1339
TLET416591 TLET_0624TLET_0623TLET_0617TLET_1009TLET_0631
TDEN326298 TMDEN_0669TMDEN_0724TMDEN_0706TMDEN_1672TMDEN_1530
TDEN292415 TBD_1245TBD_1246TBD_1249TBD_1613TBD_1614TBD_1624
TCRU317025 TCR_0743TCR_0744TCR_0747TCR_0749TCR_0748TCR_1612
STYP99287 STM1914STM1913STM1956STM1915STM1916STM1921
SSP94122 SHEWANA3_1355SHEWANA3_1356SHEWANA3_1359SHEWANA3_1361SHEWANA3_1360SHEWANA3_2218
SSON300269 SSO_1240SSO_0273SSO_1194SSO_1236SSO_1235SSO_1229
SSED425104 SSED_3053SSED_3052SSED_3049SSED_3047SSED_3048SSED_0186
SPRO399741 SPRO_2977SPRO_2976SPRO_2939SPRO_2978SPRO_2979SPRO_2985
SPEA398579 SPEA_1374SPEA_1375SPEA_1378SPEA_1380SPEA_1379SPEA_1381
SONE211586 SO_3215SO_3213SO_3210SO_3208SO_3209SO_2121
SLOI323850 SHEW_1379SHEW_1380SHEW_1383SHEW_1385SHEW_1384SHEW_0113
SHIGELLA FLHBFHIACHEZCHEYCHEA
SHAL458817 SHAL_1461SHAL_1462SHAL_1465SHAL_1467SHAL_1466SHAL_1468
SFLE373384 SFV_1921SFV_0300SFV_1966SFV_1927SFV_1928SFV_1934
SFLE198214 AAN43477.1AAN41936.1AAN43483.1AAN43484.1AAN43490.1
SENT454169 SEHA_C2129SEHA_C2128SEHA_C2171SEHA_C2130SEHA_C2131SEHA_C2137
SENT321314 SCH_1921SCH_1920SCH_1960SCH_1922SCH_1923SCH_1928
SENT295319 SPA0954SPA0955SPA0913SPA0953SPA0952SPA0947
SENT220341 STY2123STY2122STY2164STY2124STY2125STY2130
SENT209261 T0963T0964T0920T0962T0961T0956
SDEN318161 SDEN_1339SDEN_1340SDEN_1343SDEN_1345SDEN_1344SDEN_3296
SDEG203122 SDE_2169SDE_2167SDE_2164SDE_2162SDE_2163SDE_3107
SBOY300268 SBO_1120SBO_1121SBO_1084SBO_1119SBO_1118
SBAL402882 SHEW185_2923SHEW185_2922SHEW185_2919SHEW185_2917SHEW185_2918SHEW185_2247
SBAL399599 SBAL195_3055SBAL195_3054SBAL195_3051SBAL195_3049SBAL195_3050SBAL195_2364
SACI56780 SYN_02832SYN_02830SYN_02827SYN_00962SYN_00963
RSPH349102 RSPH17025_1654RSPH17025_1618RSPH17025_1616RSPH17025_1793RSPH17025_1794
RSPH349101 RSPH17029_1701RSPH17029_1664RSPH17029_1662RSPH17029_1101RSPH17029_1100
RSPH272943 RSP_0066RSP_0034RSP_0032RSP_2437RSP_2436
RSOL267608 RSP1394RSP1393RSP1390RSC0742RSP1402RSP1408
RMET266264 RMET_3698RMET_3699RMET_3702RMET_3695RMET_3694RMET_3689
RFER338969 RFER_3706RFER_3707RFER_3710RFER_3705RFER_3704RFER_0567
REUT381666 H16_B0252H16_B0253H16_B0256H16_B0245H16_B0244H16_B0239
REUT264198 REUT_B5615REUT_B5616REUT_B5619REUT_B5614REUT_B5613REUT_B5608
PSYR223283 PSPTO_1975PSPTO_1976PSPTO_1979PSPTO_1981PSPTO_1980PSPTO_0913
PSYR205918 PSYR_3441PSYR_3440PSYR_3437PSYR_3435PSYR_3436PSYR_0786
PSTU379731 PST_2574PST_2572PST_2569PST_2567PST_2568PST_2566
PPUT76869 PPUTGB1_3914PPUTGB1_3913PPUTGB1_3910PPUTGB1_3908PPUTGB1_3909PPUTGB1_3907
PPUT351746 PPUT_1514PPUT_1523PPUT_1526PPUT_1528PPUT_1527PPUT_1529
PPUT160488 PP_4352PP_4344PP_4341PP_4339PP_4340PP_4338
PPRO298386 PBPRA0935PBPRA0936PBPRA0939PBPRA0941PBPRA0940PBPRA0774
PMEN399739 PMEN_2809PMEN_2808PMEN_2805PMEN_2803PMEN_2804PMEN_2802
PLUM243265 PLU1895PLU1896PLU1955PLU1858PLU1857PLU1851
PHAL326442 PSHAA0805PSHAA0806PSHAA0809PSHAA0811PSHAA0810PSHAA0812
PFLU220664 PFL_1654PFL_1664PFL_1667PFL_1669PFL_1668PFL_1670
PFLU216595 PFLU4422PFLU4420PFLU4417PFLU4415PFLU4416PFLU5093
PFLU205922 PFL_1552PFL_1560PFL_1563PFL_1565PFL_1564PFL_1566
PENT384676 PSEEN3800PSEEN3799PSEEN3796PSEEN3794PSEEN3795PSEEN3793
PCAR338963 PCAR_1163PCAR_1162PCAR_1159PCAR_1205PCAR_1197
PATL342610 PATL_3034PATL_3033PATL_3030PATL_3028PATL_3029PATL_3027
PAER208964 PA1449PA1452PA1455PA1457PA1456PA0178
PAER208963 PA14_45720PA14_45680PA14_45630PA14_45610PA14_45620PA14_02250
NSP387092 NIS_0635NIS_0615NIS_0724NIS_0601NIS_0604
NSP35761 NOCA_0740NOCA_0739NOCA_1118NOCA_3595NOCA_3604
NEUT335283 NEUT_2443NEUT_2444NEUT_2447NEUT_1275NEUT_1276NEUT_1167
NEUR228410 NE2487NE2488NE2491NE1924NE1923NE1866
MXAN246197 MXAN_2450MXAN_2463MXAN_2437MXAN_4751MXAN_4758
MSP400668 MMWYL1_3431MMWYL1_3430MMWYL1_3428MMWYL1_3426MMWYL1_3427MMWYL1_3299
MPET420662 MPE_A3077MPE_A3078MPE_A3081MPE_A2875MPE_A2874MPE_A0585
MFLA265072 MFLA_1944MFLA_1945MFLA_1948MFLA_1928MFLA_1929MFLA_1936
MAQU351348 MAQU_1981MAQU_1978MAQU_1975MAQU_1973MAQU_1974MAQU_1972
LINT267671 LIC_11375LIC_11376LIC_11380LIC_11526LIC_11524
LINT189518 LA2608LA2607LA2603LA2423LA1251
LCHO395495 LCHO_1618LCHO_1619LCHO_1622LCHO_0998LCHO_0999LCHO_1599
LBOR355277 LBJ_1625LBJ_1624LBJ_1620LBJ_1810LBJ_0927
LBOR355276 LBL_1843LBL_1842LBL_1838LBL_1473LBL_2106
LBIF456481 LEPBI_I2547LEPBI_I2546LEPBI_I0946LEPBI_I1585LEPBI_I2392
LBIF355278 LBF_2467LBF_2466LBF_0912LBF_1534LBF_2324
KRAD266940 KRAD_1669KRAD_1673KRAD_1411KRAD_0323KRAD_0314
JSP375286 MMA_2087MMA_2086MMA_2083MMA_1086MMA_2090MMA_2095
ILOI283942 IL1187IL1120IL1117IL1115IL1116IL1114
HPYL85963 JHP0707JHP0383JHP0392JHP0358JHP0989
HPYL357544 HPAG1_0755HPAG1_0406HPAG1_0415HPAG1_0380HPAG1_1000
HPY HP0770HP1041HP1032HP1067HP0392
HHEP235279 HH_1018HH_0467HH_1146HH_0825HH_0672
HHAL349124 HHAL_0481HHAL_0477HHAL_0475HHAL_0476HHAL_2167
HCHE349521 HCH_05175HCH_05174HCH_05171HCH_05169HCH_05170HCH_00455
HARS204773 HEAR1310HEAR1311HEAR1314HEAR0953HEAR1307HEAR1301
HACI382638 HAC_0645HAC_1145HAC_1136HAC_1178HAC_0450
GURA351605 GURA_4196GURA_4111GURA_4108GURA_4220GURA_2169
GSUL243231 GSU_0426GSU_3056GSU_3053GSU_0403GSU_1290
GMET269799 GMET_3094GMET_0426GMET_0429GMET_3119GMET_1080
FNOD381764 FNOD_0960FNOD_0376FNOD_0383FNOD_0092FNOD_0690
ESP42895 ENT638_2447ENT638_2446ENT638_2509ENT638_2452ENT638_2453ENT638_2466
EFER585054 EFER_1194EFER_1195EFER_1171EFER_1145EFER_1144EFER_1133
ECOO157 FLHBFLHAFLIACHEZCHEYCHEA
ECOL83334 ECS2590ECS2589ECS2661ECS2591ECS2592ECS2598
ECOL585397 ECED1_2148ECED1_2147ECED1_2187ECED1_2149ECED1_2150ECED1_2156
ECOL585057 ECIAI39_1170ECIAI39_1171ECIAI39_1133ECIAI39_1169ECIAI39_1168ECIAI39_1163
ECOL585056 ECUMN_2177ECUMN_2176ECUMN_2214ECUMN_2178ECUMN_2179ECUMN_2185
ECOL585055 EC55989_2059EC55989_2058EC55989_2143EC55989_2060EC55989_2061EC55989_2067
ECOL585035 ECS88_1938ECS88_1937ECS88_1976ECS88_1939ECS88_1940ECS88_1945
ECOL585034 ECIAI1_1967ECIAI1_1966ECIAI1_2007ECIAI1_1968ECIAI1_1969ECIAI1_1975
ECOL481805 ECOLC_1752ECOLC_1753ECOLC_1717ECOLC_1751ECOLC_1750ECOLC_1744
ECOL469008 ECBD_1758ECBD_1759ECBD_1720ECBD_1757ECBD_1756ECBD_1750
ECOL439855 ECSMS35_1307ECSMS35_1308ECSMS35_1260ECSMS35_1303ECSMS35_1302ECSMS35_1296
ECOL413997 ECB_01851ECB_01850ECB_01852ECB_01853ECB_01859
ECOL409438 ECSE_2115ECSE_2114ECSE_2153ECSE_2116ECSE_2117ECSE_2123
ECOL405955 APECO1_929APECO1_928APECO1_963APECO1_930APECO1_931APECO1_936
ECOL364106 UTI89_C2083UTI89_C2082UTI89_C2123UTI89_C2085UTI89_C2086UTI89_C2091
ECOL362663 ECP_1825ECP_1824ECP_1855ECP_1826ECP_1827ECP_1832
ECOL331111 ECE24377A_2112ECE24377A_2111ECE24377A_2156ECE24377A_2114ECE24377A_2115ECE24377A_2121
ECOL316407 ECK1881:JW1869:B1880ECK1880:JW1868:B1879ECK1921:JW1907:B1922ECK1882:JW1870:B1881ECK1883:JW1871:B1882ECK1889:JW1877:B1888
ECOL199310 C2294C2293C2337C2296C2297C2303
ECAR218491 ECA1696ECA1697ECA1739ECA1695ECA1694ECA1689
DVUL882 DVU_A0101DVU_3232DVU_3229DVU_3228DVU_1594
DPSY177439 DP2674DP2675DP2678DP2651DP2642
DHAF138119 DSY2975DSY2974DSY2967DSY4623DSY2994
DDES207559 DDE_0379DDE_0380DDE_0383DDE_0384DDE_2106
DARO159087 DARO_0739DARO_0740DARO_0743DARO_0737DARO_0736DARO_0726
CVIO243365 CV_1026CV_1025CV_1022CV_3449CV_3448CV_3442
CSAL290398 CSAL_2016CSAL_2015CSAL_2011CSAL_2017CSAL_2018CSAL_2024
CPSY167879 CPS_1515CPS_1516CPS_1519CPS_1521CPS_1520CPS_1522
CKLU431943 CKL_1166CKL_1167CKL_1170CKL_1122CKL_2129
CJEJ407148 C8J_0312C8J_0820C8J_0054C8J_1059C8J_0260
CJEJ360109 JJD26997_1623JJD26997_1027JJD26997_0071JJD26997_0603JJD26997_1687
CJEJ354242 CJJ81176_0357CJJ81176_0890CJJ81176_0099CJJ81176_1136CJJ81176_0310
CJEJ195099 CJE_0380CJE_0962CJE_0058CJE_1261CJE_0332
CJEJ192222 CJ0335CJ0882CCJ0061CCJ1118CCJ0284C
CJAP155077 CJA_1729CJA_2144CJA_2141CJA_2139CJA_2140CJA_2945
CFET360106 CFF8240_0342CFF8240_1095CFF8240_1511CFF8240_1350CFF8240_0331
CCUR360105 CCV52592_1722CCV52592_1553CCV52592_0370CCV52592_1198CCV52592_1657
CCON360104 CCC13826_0999CCC13826_2035CCC13826_1021CCC13826_0443CCC13826_1580
BWEI315730 BCERKBAB4_1592BCERKBAB4_1593BCERKBAB4_0903BCERKBAB4_1215BCERKBAB4_1547
BVIE269482 BCEP1808_0227BCEP1808_0228BCEP1808_0231BCEP1808_0222BCEP1808_0221BCEP1808_0215
BTHU412694 BALH_1506BALH_1507BALH_0889BALH_1162BALH_1471
BTHU281309 BT9727_1556BT9727_1557BT9727_0913BT9727_1191BT9727_1518
BTHA271848 BTH_I3170BTH_I3169BTH_I3166BTH_I3175BTH_I3176BTH_II0156
BSUB BSU16380BSU16390BSU16470BSU23120BSU16430
BSP36773 BCEP18194_A3370BCEP18194_A3371BCEP18194_A3374BCEP18194_A3365BCEP18194_A3364BCEP18194_A3358
BPSE320373 BURPS668_3844BURPS668_3843BURPS668_3840BURPS668_3848BURPS668_3849BURPS668_A0204
BPSE320372 BURPS1710B_A0070BURPS1710B_A0069BURPS1710B_A0066BURPS1710B_A0075BURPS1710B_A0076BURPS1710B_A0082
BPSE272560 BPSL3295BPSL3294BPSL3291BPSL3299BPSL3300BPSL3306
BPET94624 BPET2110BPET2114BPET2096BPET2108BPET2107BPET2102
BPER257313 BP1366BP2261BP1021BP1034BP1033BP1028
BPAR257311 BPP1479BPP2215BPP1466BPP1478BPP1477BPP1472
BMAL320389 BMA10247_3128BMA10247_3129BMA10247_3132BMA10247_3124BMA10247_3123BMA10247_3116
BMAL320388 BMASAVP1_A3423BMASAVP1_A3422BMASAVP1_A3419BMASAVP1_A3427BMASAVP1_A3428BMASAVP1_A3435
BMAL243160 BMA_2847BMA_2846BMA_2843BMA_2851BMA_2852BMA_2859
BLIC279010 BL01255BL01254BL01246BL00658BL01250
BHAL272558 BH2439BH2438BH2431BH1580BH2970
BCER572264 BCA_1729BCA_1730BCA_1029BCA_1351BCA_1691
BCER288681 BCE33L1545BCE33L1546BCE33L0896BCE33L1193BCE33L1507
BCEN331272 BCEN2424_0267BCEN2424_0268BCEN2424_0271BCEN2424_0263BCEN2424_0262BCEN2424_0256
BCEN331271 BCEN_2840BCEN_2839BCEN_2836BCEN_2844BCEN_2845BCEN_2851
BBRO257310 BB2553BB2554BB2540BB2552BB2551BB2546
BBAC264462 BD3322BD3321BD3318BD1825BD3469
BANT592021 BAA_1790BAA_1791BAA_1086BAA_1379BAA_1734
BANT568206 BAMEG_2871BAMEG_2870BAMEG_3579BAMEG_3285BAMEG_2927
BANT260799 BAS1592BAS1593BAS0928BAS1213BAS1543
BAMY326423 RBAM_016220RBAM_016230RBAM_016310RBAM_021260RBAM_016270
BAMB398577 BAMMC406_0194BAMMC406_0195BAMMC406_0198BAMMC406_0189BAMMC406_0188BAMMC406_0182
BAMB339670 BAMB_0181BAMB_0182BAMB_0185BAMB_0176BAMB_0175BAMB_0169
ASP62928 AZO1103AZO1104AZO1107AZO1461AZO1460AZO1451
ASP232721 AJS_3819AJS_3820AJS_3823AJS_3818AJS_3817AJS_3790
ASAL382245 ASA_0351ASA_1351ASA_1354ASA_1356ASA_1355ASA_3266
AMET293826 AMET_2704AMET_0615AMET_2694AMET_1518AMET_2698
AHYD196024 AHA_1378AHA_1379AHA_1382AHA_1384AHA_1383AHA_1036
AEHR187272 MLG_0981MLG_0982MLG_0985MLG_0987MLG_0986MLG_0988
ADEH290397 ADEH_0700ADEH_1358ADEH_1355ADEH_1378ADEH_1370
ACEL351607 ACEL_0860ACEL_0861ACEL_1546ACEL_1787ACEL_1793
ABAU360910 BAV1682BAV1683BAV1669BAV1681BAV1680BAV1675
ABAC204669 ACID345_1639ACID345_1638ACID345_1637ACID345_2920ACID345_1524
AAVE397945 AAVE_4412AAVE_4413AAVE_4416AAVE_4411AAVE_4410AAVE_4378


Organism features enriched in list (features available for 184 out of the 192 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Singles 0.0080086102286
Disease:Bubonic_plague 0.000934066
Disease:Food_poisoning 0.004973479
Disease:Gastroenteritis 6.893e-61213
Disease:Leptospirosis 0.009701144
Endospores:No 0.000042346211
GC_Content_Range4:0-40 1.090e-1132213
GC_Content_Range4:40-60 9.118e-694224
GC_Content_Range4:60-100 0.003603958145
GC_Content_Range7:30-40 0.000016532166
GC_Content_Range7:50-60 0.000049951107
GC_Content_Range7:60-70 0.001381556134
Genome_Size_Range5:0-2 3.310e-1414155
Genome_Size_Range5:2-4 2.226e-1030197
Genome_Size_Range5:4-6 6.941e-28116184
Genome_Size_Range5:6-10 0.00184002447
Genome_Size_Range9:1-2 9.878e-1014128
Genome_Size_Range9:2-3 3.434e-913120
Genome_Size_Range9:4-5 4.439e-105796
Genome_Size_Range9:5-6 7.170e-145988
Genome_Size_Range9:6-8 0.00033762238
Gram_Stain:Gram_Neg 1.418e-21156333
Gram_Stain:Gram_Pos 1.469e-1215150
Habitat:Host-associated 0.002371351206
Habitat:Multiple 0.000117875178
Motility:No 5.770e-189151
Motility:Yes 2.134e-28145267
Optimal_temp.:- 0.000424899257
Optimal_temp.:28-30 0.000288177
Optimal_temp.:37 0.001248921106
Oxygen_Req:Anaerobic 0.000013315102
Oxygen_Req:Facultative 0.000050684201
Oxygen_Req:Microaerophilic 0.00032671318
Pathogenic_in:No 0.000805555226
Shape:Coccus 1.761e-12282
Shape:Rod 3.131e-10143347
Shape:Sphere 0.0059307119
Shape:Spiral 7.378e-62334
Temp._range:Hyperthermophilic 0.0014874123
Temp._range:Mesophilic 0.0001000165473
Temp._range:Thermophilic 0.0008581335



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 299
Effective number of orgs (counting one per cluster within 468 clusters): 232

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TPEN368408 ncbi Thermofilum pendens Hrk 50
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX1
TELO197221 ncbi Thermosynechococcus elongatus BP-11
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93111
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321327 ncbi Synechococcus sp. JA-3-3Ab1
SSP1148 ncbi Synechocystis sp. PCC 68031
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63011
SCO ncbi Streptomyces coelicolor A3(2)1
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2050
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99411
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP101510 ncbi Rhodococcus jostii RHA11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP296591 ncbi Polaromonas sp. JS6660
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PNAP365044 ncbi Polaromonas naphthalenivorans CJ20
PMUL272843 ncbi Pasteurella multocida multocida Pm700
PMAR93060 ncbi Prochlorococcus marinus MIT 92151
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96011
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT31
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE51
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSP103690 ncbi Nostoc sp. PCC 71201
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101521
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124441
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E0
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S21
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A1
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785780
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-11
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HSAL478009 ncbi Halobacterium salinarum R11
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HINF71421 ncbi Haemophilus influenzae Rd KW200
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237791
GVIO251221 ncbi Gloeobacter violaceus PCC 74211
GFOR411154 ncbi Gramella forsetii KT08031
GBET391165 ncbi Granulibacter bethesdensis CGDNIH11
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI31
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25941
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRAD243230 ncbi Deinococcus radiodurans R10
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
BXEN266265 ncbi Burkholderia xenovorans LB4001
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BQUI283165 ncbi Bartonella quintana Toulouse0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23081
BLON206672 ncbi Bifidobacterium longum NCC27050
BHEN283166 ncbi Bartonella henselae Houston-10
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BCIC186490 Candidatus Baumannia cicadellinicola0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9411
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294131
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN11
ASP62977 ncbi Acinetobacter sp. ADP10
ASP1667 Arthrobacter sp.0
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL030
APLE416269 ncbi Actinobacillus pleuropneumoniae L200
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG10
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
ABOR393595 ncbi Alcanivorax borkumensis SK20
AAUR290340 ncbi Arthrobacter aurescens TC10


Names of the homologs of the genes in the group in each of these orgs
  G7028   G370   EG11355   EG10151   EG10150   EG10146   
XFAS405440
XFAS183190
XFAS160492
XAUT78245
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160 LRC571
TWHI218496
TWHI203267
TVOL273116
TTHE300852
TTHE262724
TPEN368408
TKOD69014
TFUS269800 TFU_1334
TELO197221 TLL2438
TACI273075
STRO369723
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471 GSYN3080
SSP387093
SSP321327 CYA_0597
SSP1148 SLL1689
SSP1131
SSOL273057
SSAP342451
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SHAE279808
SGOR29390
SERY405948 SACE_6040
SEPI176280
SEPI176279
SELO269084 SYC2495_C
SCO SCO5621
SAVE227882 SAV2630
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037
SAGA211110
SAGA208435
SAGA205921
SACI330779
RXYL266117 RXYL_1397
RTYP257363
RSP101510 RHA1_RO00098
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PSP56811
PSP312153
PSP296591
PRUM264731
PPEN278197
PNAP365044
PMUL272843
PMAR93060 P9215_15171
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546 P9301ORF_1498
PMAR167542 P9515ORF_1513
PMAR167540 PMM1289
PMAR167539 PRO_1863
PMAR146891 A9601_14881
PLUT319225
PISL384616
PINT246198 PIN_A1284
PHOR70601 PH0484
PGIN242619
PFUR186497
PDIS435591
PCRY335284
PAST100379
PARS340102
PARC259536
PAER178306
PACN267747
PABY272844 PAB1332
OTSU357244
NSP103690 ALR4249
NSEN222891
NPHA348780 NP2172A
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NGON242231
NFAR247156 NFA27110
NARO279238 SARO_3074
MTUB419947 MRA_3327
MTUB336982 TBFG_13315
MTHE349307
MTHE187420
MTBRV RV3286C
MTBCDC MT3385
MSYN262723
MSUC221988
MSTA339860
MSP189918 MKMS_1298
MSP164757 MJLS_1310
MSP164756 MMCS_1281
MSME246196 MSMEG_1804
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM1325
MMAR444158 MMARC6_1728
MMAR426368 MMARC7_0174
MMAR402880 MMARC5_0734
MMAR368407
MMAR267377 MMP0927
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_0110
MGIL350054 MFLV_3872
MGEN243273
MFLO265311
MCAP340047
MCAP243233
MBUR259564 MBUR_0361
MBOV410289 BCG_3315C
MBOV233413 MB3314C
MBAR269797 MBAR_A0984
MAVI243243 MAV_4256
MART243272
MAER449447
MAEO419665
MACE188937 MA0014
MABS561007 MAB_2511
LXYL281090 LXX06230
LSAK314315
LREU557436
LPLA220668
LMES203120
LLAC272623
LLAC272622
LJOH257314
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LACI272621
KPNE272620
IHOS453591
HWAL362976
HSP64091 VNG0971G
HSOM228400
HSOM205914
HSAL478009 OE2415R
HMUK485914 HMUK_0249
HMAR272569 RRNAC2205
HINF71421
HINF374930
HINF281310
HDUC233412
HBUT415426
HAUR316274 HAUR_0367
GVIO251221 GLL3762
GFOR411154 GFO_0379
GBET391165 GBCGDNIH1_0915
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855 FRANEAN1_0974
FSP106370 FRANCCI3_3755
FRANT
FPHI484022
FNUC190304
FMAG334413
FJOH376686 FJOH_1433
FALN326424 FRAAL5992
ERUM302409
ERUM254945
ELIT314225 ELI_11255
EFAE226185
ECHA205920
ECAN269484
DSP255470
DSP216389
DRAD243230
DNOD246195
DGEO319795
DETH243164
CVES412965
CTEP194439
CSUL444179
CRUT413404
CPER289380
CPER195103
CPER195102
CPEL335992
CMIC443906
CMIC31964
CMET456442 MBOO_1336
CMAQ397948
CKOR374847
CJEI306537
CHUT269798 CHU_1785
CHOM360107
CGLU196627
CEFF196164
CDIP257309
CCHL340177
CBUR434922
CBUR360115
CBUR227377
CBLO291272
CBLO203907
BXEN266265 BXE_B3007
BTRI382640
BTHE226186 BT_1311
BQUI283165
BMEL359391 BAB2_0120
BLON206672
BHEN283166
BFRA295405 BF2742
BFRA272559 BF2759
BCIC186490
BABO262698 BRUAB2_0119
AYEL322098
AVAR240292 AVA_1198
AURANTIMONAS
ASP76114 EBA705
ASP62977
ASP1667
APLE434271
APLE416269
APHA212042
APER272557
ANAE240017
AMAR234826
ALAI441768 ACL_0944
AFUL224325 AF_1040
AFER243159
ABOR393595
AAUR290340


Organism features enriched in list (features available for 280 out of the 299 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.00005791617
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00028261111
Disease:Wide_range_of_infections 0.00028261111
Disease:gastroenteritis 0.0022255113
Endospores:No 1.215e-10138211
Endospores:Yes 3.251e-61053
GC_Content_Range4:0-40 2.192e-8134213
GC_Content_Range4:40-60 0.003106093224
GC_Content_Range4:60-100 0.000242652145
GC_Content_Range7:30-40 2.459e-7107166
GC_Content_Range7:50-60 0.000718737107
GC_Content_Range7:60-70 0.000010043134
Genome_Size_Range5:0-2 4.468e-16117155
Genome_Size_Range5:2-4 0.0000157118197
Genome_Size_Range5:4-6 4.403e-2631184
Genome_Size_Range5:6-10 0.00392351447
Genome_Size_Range9:0-1 0.00943291927
Genome_Size_Range9:1-2 8.646e-1498128
Genome_Size_Range9:2-3 2.114e-1088120
Genome_Size_Range9:4-5 6.509e-141496
Genome_Size_Range9:5-6 1.283e-91788
Genome_Size_Range9:6-8 0.0009569938
Gram_Stain:Gram_Neg 1.131e-20105333
Gram_Stain:Gram_Pos 6.376e-9102150
Habitat:Host-associated 0.0002947118206
Habitat:Multiple 0.000870669178
Habitat:Terrestrial 0.0019161731
Motility:No 7.646e-34134151
Motility:Yes 4.690e-4447267
Optimal_temp.:- 0.0009652106257
Optimal_temp.:30-35 0.005666377
Optimal_temp.:30-37 0.00168431518
Oxygen_Req:Microaerophilic 0.0001051118
Salinity:Non-halophilic 0.002957463106
Shape:Coccus 1.131e-217782
Shape:Irregular_coccus 2.967e-61717
Shape:Rod 3.556e-16119347
Shape:Sphere 0.00093811619
Temp._range:Hyperthermophilic 0.00688901723



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181460.5745
AST-PWY (arginine degradation II (AST pathway))1201020.5731
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951320.5390
GLYCOCAT-PWY (glycogen degradation I)2461500.5276
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761190.5000
PWY-1269 (CMP-KDO biosynthesis I)3251700.4860
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001620.4838
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911220.4760
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251350.4752
PWY0-901 (selenocysteine biosynthesis I (bacteria))2301360.4691
LIPASYN-PWY (phospholipases)2121290.4671
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651780.4623
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491020.4570
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481710.4463
PWY-5340 (sulfate activation for sulfonation)3851810.4461
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861510.4385
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901520.4364
PWY-5918 (heme biosynthesis I)2721460.4358
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911520.4342
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961530.4300
PWY-5669 (phosphatidylethanolamine biosynthesis I)4161860.4265
PWY-6134 (tyrosine biosynthesis IV)89700.4229
GLUCARDEG-PWY (D-glucarate degradation I)152990.4222
GLUTDEG-PWY (glutamate degradation II)1941160.4220
TYRFUMCAT-PWY (tyrosine degradation I)1841120.4213
GALACTITOLCAT-PWY (galactitol degradation)73610.4161
PWY-5913 (TCA cycle variation IV)3011520.4121
PWY0-981 (taurine degradation IV)106770.4101
PWY-6196 (serine racemization)102750.4093
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001510.4073
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981780.4005



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G370   EG11355   EG10151   EG10150   EG10146   
G70280.9999490.9997890.9995170.9995260.999424
G3700.999850.9995020.9995380.999378
EG113550.9995350.999610.999355
EG101510.9997570.999306
EG101500.999499
EG10146



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PAIRWISE BLAST SCORES:

  G7028   G370   EG11355   EG10151   EG10150   EG10146   
G70280.0f0-----
G370-0.0f0----
EG11355--0.0f0---
EG10151---0.0f0--
EG10150----0.0f0-
EG10146-----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- CPLX0-7451 (Flagellar Export Apparatus) (degree of match pw to cand: 0.222, degree of match cand to pw: 0.333, average score: 0.999)
  Genes in pathway or complex:
             0.9988 0.9980 G378 (fliJ) G378-MONOMER (flagellar biosynthesis protein FliJ)
             0.9993 0.9990 G377 (fliI) G377-MONOMER (flagellum-specific ATP synthase FliI)
             0.9988 0.9981 EG11656 (fliH) EG11656-MONOMER (flagellar biosynthesis protein FliH)
             0.9995 0.9992 EG11977 (fliR) EG11977-MONOMER (flagellar biosynthesis protein FliR)
             0.9993 0.9990 EG11976 (fliQ) EG11976-MONOMER (flagellar biosynthesis protein FliQ)
             0.9995 0.9992 EG11975 (fliP) EG11975-MONOMER (flagellar biosynthesis protein FliP)
             0.9885 0.9850 EG11224 (fliO) EG11224-MONOMER (flagellar biosynthesis protein FliO)
   *in cand* 0.9997 0.9994 G7028 (flhB) G7028-MONOMER (flagellar biosynthesis protein FlhB)
   *in cand* 0.9997 0.9994 G370 (flhA) G370-MONOMER (flagellar biosynthesis protein FlhA)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9993 EG10146 (cheA) CHEA-SMALL (CheA(S))
   *in cand* 0.9997 0.9995 EG10150 (cheY) MONOMER0-4170 (CheY-acetylated)
   *in cand* 0.9996 0.9993 EG10151 (cheZ) CHEZ-MONOMER (CheZ)
   *in cand* 0.9997 0.9994 EG11355 (fliA) EG11355-MONOMER (RNA polymerase, sigma 28 (sigma F) factor)

- CPLX0-7452 (Flagellum) (degree of match pw to cand: 0.074, degree of match cand to pw: 0.333, average score: 0.998)
  Genes in pathway or complex:
             0.9988 0.9978 EG10841 (fliD) EG10841-MONOMER (flagellar cap protein FliD; filament capping protein; enables filament assembly)
             0.9990 0.9986 EG10321 (fliC) EG10321-MONOMER (flagellar biosynthesis; flagellin, filament structural protein)
             0.9987 0.9981 EG11545 (flgL) EG11545-MONOMER (flagellar biosynthesis; hook-filament junction protein)
             0.9988 0.9983 EG11967 (flgK) EG11967-MONOMER (flagellar biosynthesis, hook-filament junction protein 1)
             0.9987 0.9978 G361 (flgE) G361-MONOMER (flagellar hook protein FlgE)
   *in cand* 0.9997 0.9994 G370 (flhA) G370-MONOMER (flagellar biosynthesis protein FlhA)
   *in cand* 0.9997 0.9994 G7028 (flhB) G7028-MONOMER (flagellar biosynthesis protein FlhB)
             0.9885 0.9850 EG11224 (fliO) EG11224-MONOMER (flagellar biosynthesis protein FliO)
             0.9995 0.9992 EG11975 (fliP) EG11975-MONOMER (flagellar biosynthesis protein FliP)
             0.9993 0.9990 EG11976 (fliQ) EG11976-MONOMER (flagellar biosynthesis protein FliQ)
             0.9995 0.9992 EG11977 (fliR) EG11977-MONOMER (flagellar biosynthesis protein FliR)
             0.9988 0.9981 EG11656 (fliH) EG11656-MONOMER (flagellar biosynthesis protein FliH)
             0.9993 0.9990 G377 (fliI) G377-MONOMER (flagellum-specific ATP synthase FliI)
             0.9988 0.9980 G378 (fliJ) G378-MONOMER (flagellar biosynthesis protein FliJ)
             0.9995 0.9991 EG10324 (fliN) FLIN-FLAGELLAR-C-RING-SWITCH (flagellar motor switch protein FliN)
             0.9994 0.9991 EG10323 (fliM) FLIM-FLAGELLAR-C-RING-SWITCH (flagellar motor switch protein FliM)
             0.9993 0.9990 EG11654 (fliG) FLIG-FLAGELLAR-SWITCH-PROTEIN (flagellar motor switch protein FliG)
             0.9986 0.9970 G364 (flgH) FLGH-FLAGELLAR-L-RING (flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein)
             0.9990 0.9988 EG10601 (motA) MOTA-FLAGELLAR-MOTOR-STATOR-PROTEIN (MotA protein, proton conductor component of motor; no effect on switching)
             0.9988 0.9984 EG10602 (motB) MOTB-FLAGELLAR-MOTOR-STATOR-PROTEIN (MotB protein, enables flagellar motor rotation, linking torque machinery to cell wall)
             0.9990 0.9984 G358 (flgB) FLGB-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgB)
             0.9991 0.9984 G359 (flgC) FLGC-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgC)
             0.9987 0.9972 G362 (flgF) FLGF-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgF)
             0.9989 0.9982 G363 (flgG) FLGG-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgG)
             0.9984 0.9961 G365 (flgI) FLGI-FLAGELLAR-P-RING (flagellar P-ring protein FlgI)
             0.9992 0.9987 EG11347 (fliF) FLIF-FLAGELLAR-MS-RING (flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein)
             0.9992 0.9989 EG11346 (fliE) EG11346-MONOMER (flagellar basal-body protein FliE)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9993 EG10146 (cheA) CHEA-SMALL (CheA(S))
   *in cand* 0.9997 0.9995 EG10150 (cheY) MONOMER0-4170 (CheY-acetylated)
   *in cand* 0.9996 0.9993 EG10151 (cheZ) CHEZ-MONOMER (CheZ)
   *in cand* 0.9997 0.9994 EG11355 (fliA) EG11355-MONOMER (RNA polymerase, sigma 28 (sigma F) factor)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10150 EG10151 G370 G7028 (centered at EG10151)
EG10146 (centered at EG10146)
EG11355 (centered at EG11355)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7028   G370   EG11355   EG10151   EG10150   EG10146   
317/623314/623312/623128/623245/623293/623
AAEO224324:0:Tyes57603---
AAVE397945:0:Tyes34353833320
ABAC204669:0:Tyes115114113-14070
ABAU360910:0:Tyes1314012116
ABUT367737:0:Tyes755751--7800
ACAU438753:0:Tyes1934--041
ACEL351607:0:Tyes01685-926932
ACRY349163:8:Tyes6680--12541250
ADEH290397:0:Tyes0663660-683675
AEHR187272:0:Tyes014657
AFUL224325:0:Tyes-----0
AHYD196024:0:Tyes3383393423443430
ALAI441768:0:Tyes--0---
AMAR329726:9:Tyes--0-111-
AMET293826:0:Tyes204402034-8782038
AORE350688:0:Tyes0110--6
ASAL382245:5:Tyes09679709729712805
ASP232721:2:Tyes29303328270
ASP62928:0:Tyes014367366357
ASP76114:2:Tyes0-----
AVAR240292:3:Tyes--0---
BABO262698:0:Tno0-----
BAFZ390236:2:Fyes10--313426
BAMB339670:3:Tno121316760
BAMB398577:3:Tno121316760
BAMY326423:0:Tyes019-5035
BANT260799:0:Tno6586590-282609
BANT261594:2:Tno6566570-284-
BANT568206:2:Tyes10695-40357
BANT592021:2:Tno6906910-291634
BAPH198804:0:Tyes01----
BAPH372461:0:Tyes01----
BBAC264462:0:Tyes139513941391-01526
BBAC360095:0:Tyes07----
BBRO257310:0:Tyes1314012116
BBUR224326:21:Fno10--290388
BCAN483179:0:Tno0984----
BCEN331271:2:Tno4308915
BCEN331272:3:Tyes111215760
BCER226900:1:Tyes657-0-294618
BCER288681:0:Tno6416420-294603
BCER315749:1:Tyes358359--0317
BCER405917:1:Tyes-6640-309624
BCER572264:1:Tno6876880-321649
BCLA66692:0:Tyes760--349
BFRA272559:1:Tyes--0---
BFRA295405:0:Tno--0---
BGAR290434:2:Fyes10--305417
BHAL272558:0:Tyes859858851-01402
BHER314723:0:Fyes10--301402
BJAP224911:0:Fyes54591833--71350
BLIC279010:0:Tyes019-5845
BMAL243160:1:Tno54091017
BMAL320388:1:Tno4308914
BMAL320389:1:Tyes121316870
BMEL224914:0:Tno9650----
BMEL359391:0:Tno0-----
BOVI236:0:Tyes0784----
BPAR257311:0:Tno7708-650
BPER257313:0:Tyes310111001095
BPET94624:0:Tyes14-012116
BPSE272560:1:Tyes4308915
BPSE320372:1:Tno43091016
BPSE320373:0:Tno-----0
BPSE320373:1:Tno43089-
BPUM315750:0:Tyes019--5
BSP107806:2:Tyes01----
BSP36773:2:Tyes121316760
BSP376:0:Tyes33410--5231302
BSUB:0:Tyes019-7015
BSUI204722:0:Tyes0961----
BSUI470137:0:Tno01161----
BTHA271848:0:Tno-----0
BTHA271848:1:Tno430910-
BTHE226186:0:Tyes--0---
BTHU281309:1:Tno6366370-274598
BTHU412694:1:Tno5885890-260553
BTUR314724:0:Fyes10--298399
BVIE269482:7:Tyes121316760
BWEI315730:4:Tyes6816820-308638
BXEN266265:1:Tyes----0-
CABO218497:0:Tyes31300---
CACE272562:1:Tyes540--76
CAULO:0:Tyes654481--1600
CBEI290402:0:Tyes540--58
CBOT36826:1:Tno540--107
CBOT441770:0:Tyes540--104
CBOT441771:0:Tno540--106
CBOT441772:1:Tno540--85
CBOT498213:1:Tno540--96
CBOT508765:1:Tyes575862--0
CBOT515621:2:Tyes540--102
CBOT536232:0:Tno540--106
CCAV227941:1:Tyes31300---
CCON360104:2:Tyes0884969-1045141
CCUR360105:0:Tyes11653211108-01229
CDES477974:0:Tyes540--48
CDIF272563:1:Tyes014--283
CFEL264202:1:Tyes0132---
CFET360106:0:Tyes117431146-9890
CHUT269798:0:Tyes--0---
CHYD246194:0:Tyes015--25
CJAP155077:0:Tyes04034003983991197
CJEJ192222:0:Tyes2507790-1019202
CJEJ195099:0:Tno3168770-1166269
CJEJ354242:2:Tyes2567640-1000209
CJEJ360109:0:Tyes14468970-4951508
CJEJ407148:0:Tno2587850-1035206
CKLU431943:1:Tyes444548-01000
CMET456442:0:Tyes-----0
CMUR243161:1:Tyes34330---
CNOV386415:0:Tyes545559--0
CPHY357809:0:Tyes11100--5
CPNE115711:1:Tyes39380---
CPNE115713:0:Tno0135---
CPNE138677:0:Tno0138---
CPNE182082:0:Tno0138---
CPRO264201:0:Fyes10----
CPSY167879:0:Tyes014657
CSAL290398:0:Tyes5406713
CSP501479:6:Fyes----30
CSP501479:7:Fyes20----
CSP78:2:Tyes1108736--40
CTET212717:0:Tyes540--71
CTRA471472:0:Tyes30290---
CTRA471473:0:Tno30290---
CVIO243365:0:Tyes430248624852479
DARO159087:0:Tyes13141711100
DDES207559:0:Tyes014-51755
DHAF138119:0:Tyes870-166627
DOLE96561:0:Tyes----90
DPSY177439:2:Tyes323336-90
DRED349161:0:Tyes540--52
DSHI398580:5:Tyes02----
DVUL882:0:Tyes0-----
DVUL882:1:Tyes-16281625-16240
ECAR218491:0:Tyes7849650
ECOL199310:0:Tno10443410
ECOL316407:0:Tno1042239
ECOL331111:6:Tno10423410
ECOL362663:0:Tno1034238
ECOL364106:1:Tno1041349
ECOL405955:2:Tyes1034238
ECOL409438:6:Tyes1042239
ECOL413997:0:Tno10-239
ECOL439855:4:Tno44450403933
ECOL469008:0:Tno41420403933
ECOL481805:0:Tno38390373630
ECOL585034:0:Tno10442310
ECOL585035:0:Tno1042239
ECOL585055:0:Tno10892310
ECOL585056:2:Tno10432310
ECOL585057:0:Tno40410393832
ECOL585397:0:Tno1044239
ECOL83334:0:Tno1075239
ECOLI:0:Tno10462310
ECOO157:0:Tno1071239
EFER585054:1:Tyes61623712110
ELIT314225:0:Tyes----0-
ESP42895:1:Tyes10666720
FALN326424:0:Tyes--0---
FJOH376686:0:Tyes--0---
FNOD381764:0:Tyes883287294-0598
FSP106370:0:Tyes--0---
FSP1855:0:Tyes--0---
GBET391165:0:Tyes----0-
GFOR411154:0:Tyes--0---
GKAU235909:1:Tyes019--5
GMET269799:1:Tyes267403-2699657
GOXY290633:5:Tyes10920--11251121
GSUL243231:0:Tyes2326412638-0882
GTHE420246:1:Tyes018--4
GURA351605:0:Tyes200819231920-20320
GVIO251221:0:Tyes--0---
HACI382638:1:Tyes175632623-6640
HARS204773:0:Tyes3433443470340335
HAUR316274:2:Tyes--0---
HCHE349521:0:Tyes453345324529452745280
HHAL349124:0:Tyes5-2011709
HHEP235279:0:Tyes5690697-364209
HMAR272569:8:Tyes-----0
HMOD498761:0:Tyes019--5
HMUK485914:1:Tyes-----0
HNEP81032:0:Tyes20----
HPY:0:Tno376652643-6790
HPYL357544:1:Tyes3782736-0634
HPYL85963:0:Tno3442534-0626
HSAL478009:4:Tyes-----0
HSP64091:2:Tno-----0
ILOI283942:0:Tyes7963120
JSP290400:1:Tyes13701368--03
JSP375286:0:Tyes101810171014010211026
KRAD266940:2:Fyes40261-13691378
LBIF355278:2:Tyes153615350-6131395
LBIF456481:2:Tno158515840-6341437
LBOR355276:1:Tyes335334330-0575
LBOR355277:1:Tno620619615-7820
LCHO395495:0:Tyes62462562801605
LINN272626:1:Tno01205--13
LINT189518:1:Tyes136813671363-11800
LINT267671:1:Tno015-149147
LINT363253:3:Tyes43--0617
LMON169963:0:Tno01215--13
LMON265669:0:Tyes01197--13
LPNE272624:0:Tno430---
LPNE297245:1:Fno430---
LPNE297246:1:Fyes430---
LPNE400673:0:Tno430---
LSPH444177:1:Tyes0110--5
LWEL386043:0:Tyes01229--13
LXYL281090:0:Tyes--0---
MABS561007:1:Tyes--0---
MACE188937:0:Tyes-----0
MAQU351348:2:Tyes963120
MAVI243243:0:Tyes--0---
MBAR269797:1:Tyes-----0
MBOV233413:0:Tno--0---
MBOV410289:0:Tno--0---
MBUR259564:0:Tyes-----0
MEXT419610:0:Tyes2198398--01124
MFLA265072:0:Tyes161720018
MGIL350054:3:Tyes--0---
MHUN323259:0:Tyes-----0
MLOT266835:2:Tyes046----
MMAG342108:0:Tyes293172--31750
MMAR267377:0:Tyes-----0
MMAR394221:0:Tyes131971--048
MMAR402880:1:Tyes-----0
MMAR426368:0:Tyes-----0
MMAR444158:0:Tyes-----0
MMAZ192952:0:Tyes-----0
MPET420662:1:Tyes2485248624892283-0
MSME246196:0:Tyes--0---
MSP164756:1:Tno--0---
MSP164757:0:Tno--0---
MSP189918:2:Tyes--0---
MSP266779:3:Tyes350----
MSP400668:0:Tyes1301291271251260
MSP409:2:Tyes9551665--02525
MTBCDC:0:Tno--0---
MTBRV:0:Tno--0---
MTHE264732:0:Tyes474852--0
MTUB336982:0:Tno--0---
MTUB419947:0:Tyes--0---
MVAN350058:0:Tyes--0-264-
MXAN246197:0:Tyes13260-22312238
NARO279238:0:Tyes--0---
NEUR228410:0:Tyes63063163459580
NEUT335283:2:Tyes1252125312561091100
NFAR247156:2:Tyes--0---
NHAM323097:2:Tyes01912--1708-
NMUL323848:3:Tyes971972975-0-
NOCE323261:1:Tyes430---
NPHA348780:2:Tyes-----0
NSP103690:6:Tyes--0---
NSP35761:1:Tyes10374-28652874
NSP387092:0:Tyes3414128-03
NWIN323098:0:Tyes6110--2032-
OANT439375:4:Tyes360----
OCAR504832:0:Tyes01701--1827-
OIHE221109:0:Tyes018--981
PABY272844:0:Tyes-----0
PAER208963:0:Tyes350335003497349534960
PAER208964:0:Tno128512881291129312920
PATL342610:0:Tyes763120
PCAR338963:0:Tyes430-4537
PENT384676:0:Tyes763120
PFLU205922:0:Tyes0811131214
PFLU216595:1:Tyes75201649
PFLU220664:0:Tyes01013151416
PHAL326442:1:Tyes014657
PHOR70601:0:Tyes-----0
PING357804:0:Tyes01----
PINT246198:1:Tyes--0---
PLUM243265:0:Fyes4445104760
PMAR146891:0:Tyes--0---
PMAR167539:0:Tyes--0---
PMAR167540:0:Tyes--0---
PMAR167542:0:Tyes--0---
PMAR167546:0:Tyes--0---
PMAR93060:0:Tyes--0---
PMEN399739:0:Tyes763120
PMOB403833:0:Tyes7813--0
PPRO298386:2:Tyes1611621651671660
PPUT160488:0:Tno1463120
PPUT351746:0:Tyes0912141315
PPUT76869:0:Tno763120
PSP117:0:Tyes039573953---
PSTU379731:0:Tyes863120
PSYR205918:0:Tyes266326622659265726580
PSYR223283:2:Tyes105510561059106110600
PTHE370438:0:Tyes540--48
RCAS383372:0:Tyes--0-418-
RDEN375451:4:Tyes20--27212718
RETL347834:5:Tyes1248--01
REUT264198:2:Tyes7811650
REUT381666:1:Tyes131417650
RFER338969:1:Tyes313931403143313831370
RLEG216596:6:Tyes1248--01
RMET266264:1:Tyes91013650
RPAL258594:0:Tyes37671505--10440
RPAL316055:0:Tyes6303313--0269
RPAL316056:0:Tyes6223324--03784
RPAL316057:0:Tyes4142405--02416
RPAL316058:0:Tyes26022737--02751
RPOM246200:1:Tyes20----
RRUB269796:1:Tyes22750--2291857
RSOL267608:0:Tyes430-1218
RSOL267608:1:Tyes---0--
RSP101510:3:Fyes--0---
RSP357808:0:Tyes--4231-0-
RSPH272943:4:Tyes651614612-10
RSPH349101:2:Tno608571569-10
RSPH349102:5:Tyes3820-177178
RXYL266117:0:Tyes--0---
SACI56780:0:Tyes144145148-10
SALA317655:1:Tyes2110---
SAVE227882:1:Fyes--0---
SBAL399599:3:Tyes7207197167147150
SBAL402882:1:Tno7067057027007010
SBOY300268:1:Tyes333403231-
SCO:2:Fyes--0---
SDEG203122:0:Tyes75201950
SDEN318161:0:Tyes014652011
SDYS300267:0:Tyes-0----
SDYS300267:1:Tyes--0---
SELO269084:0:Tyes--0---
SENT209261:0:Tno42430414035
SENT220341:0:Tno1043238
SENT295319:0:Tno40410393834
SENT321314:2:Tno1043238
SENT454169:2:Tno1040239
SERY405948:0:Tyes--0---
SFLE198214:0:Tyes15720-157815791585
SFLE373384:0:Tno152601569153215331539
SFUM335543:0:Tyes--658-0920
SGLO343509:3:Tyes01342095--
SHAL458817:0:Tyes014657
SHIGELLA:0:Tno15180-152315241530
SLAC55218:1:Fyes20----
SLOI323850:0:Tyes129512961299130113000
SMED366394:3:Tyes1148--40
SMEL266834:2:Tyes1147--40
SONE211586:1:Tyes107210701067106510660
SPEA398579:0:Tno014657
SPRO399741:1:Tyes38370394046
SRUB309807:1:Tyes430-23-
SSED425104:0:Tyes297729762973297129720
SSON300269:1:Tyes9210876917916910
SSP1148:0:Tyes--0---
SSP292414:1:Tyes----03
SSP292414:2:Tyes20----
SSP321327:0:Tyes--0---
SSP321332:0:Tyes--536--0
SSP644076:2:Fyes----03
SSP644076:6:Fyes20----
SSP64471:0:Tyes--0---
SSP94122:1:Tyes01465903
STHE292459:0:Tyes149014891486--0
STYP99287:1:Tyes1042238
SWOL335541:0:Tyes0110--6
TCRU317025:0:Tyes01465888
TDEN243275:0:Tyes012611--1426
TDEN292415:0:Tyes014370371381
TDEN326298:0:Tyes05637-1020875
TELO197221:0:Tyes----0-
TERY203124:0:Tyes--0--2016
TFUS269800:0:Tyes--0---
TLET416591:0:Tyes760-40614
TMAR243274:0:Tyes206205199--0
TPAL243276:0:Tyes347346341--0
TPET390874:0:Tno017--215
TPSE340099:0:Tyes1090--4
TROS309801:0:Tyes014---
TSP1755:0:Tyes1090--4
TSP28240:0:Tyes017--210
TTEN273068:0:Tyes1090--4
TTUR377629:0:Tyes17212427260
UMET351160:0:Tyes-----0
VCHO:0:Tyes555201-
VCHO:1:Fyes-----0
VCHO345073:0:Tno-----0
VCHO345073:1:Tno505201-
VEIS391735:1:Tyes320346734661232
VFIS312309:2:Tyes863120
VPAR223926:1:Tyes763120
VVUL196600:1:Tyes-----0
VVUL196600:2:Tyes65201-
VVUL216895:0:Tno-----0
VVUL216895:1:Tno01465-
WSUC273121:0:Tyes1260401919-01331
XAXO190486:0:Tyes343330-290
XCAM190485:0:Tyes252421-200
XCAM314565:0:Tno014-526
XCAM316273:0:Tno353429-280
XCAM487884:0:Tno333228-270
XORY291331:0:Tno014-5225
XORY342109:0:Tyes014-5223
XORY360094:0:Tno195419561964-19660
YENT393305:1:Tyes45440474854
YPES187410:5:Tno69169063716150
YPES214092:3:Tno11511616513120
YPES349746:2:Tno011723317831772496
YPES360102:3:Tyes0155686687700
YPES377628:2:Tno3883873340114
YPES386656:2:Tno51500493494507
YPSE273123:2:Tno0149730731739
YPSE349747:2:Tno690689636980
ZMOB264203:0:Tyes581555557-04



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