CANDIDATE ID: 168

CANDIDATE ID: 168

NUMBER OF GENES: 6
AVERAGE SCORE:    9.9961740e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG11569 (lptD) (b0054)
   Products of gene:
     - EG11569-MONOMER (LptD)
     - CPLX0-7628 (outer membrane LPS assembly complex)

- EG10985 (surA) (b0053)
   Products of gene:
     - EG10985-MONOMER (peptidyl-prolyl cis-trans isomerase (PPIase))
       Reactions:
        peptidylproline (omega = 180)  =  peptidylproline (omega = 0)

- EG10691 (pdxA) (b0052)
   Products of gene:
     - PDXA-MONOMER (PdxA)
     - CPLX0-7847 (4-hydroxy-L-threonine phosphate dehydrogenase, NAD-dependent)
       Reactions:
        4-phospho-hydroxy-L-threonine + NAD+  ->  NADH + (2S)-2-amino-3-oxo-4-phosphonooxybutanoate + 2 H+
         In pathways
         PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)
         PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)

- EG10523 (rsmA) (b0051)
   Products of gene:
     - EG10523-MONOMER (16S rRNA m62A1518,m62A1519 dimethyltransferase)
       Reactions:
        adenine1518/adenine1519 in 16S rRNA + 4 S-adenosyl-L-methionine  ->  N6-dimethyladenine1518/N6-dimethyladenine1519in 16S rRNA + 4 S-adenosyl-L-homocysteine

- EG10048 (apaH) (b0049)
   Products of gene:
     - EG10048-MONOMER (diadenosine tetraphosphatase)
       Reactions:
        5',5'''-diadenosine tetraphosphate + H2O  ->  2 ADP + 2 H+

- EG10047 (apaG) (b0050)
   Products of gene:
     - EG10047-MONOMER (hypothetical protein)



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ORGANISMS CONTAINING AT LEAST 5 GENES FROM THE GROUP:

Total number of orgs: 199
Effective number of orgs (counting one per cluster within 468 clusters): 135

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317586
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329536
YPES386656 ncbi Yersinia pestis Pestoides F6
YPES377628 ncbi Yersinia pestis Nepal5166
YPES360102 ncbi Yersinia pestis Antiqua6
YPES349746 ncbi Yersinia pestis Angola6
YPES214092 ncbi Yersinia pestis CO926
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80816
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A6
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110186
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103316
XFAS405440 ncbi Xylella fastidiosa M126
XFAS183190 ncbi Xylella fastidiosa Temecula16
XFAS160492 ncbi Xylella fastidiosa 9a5c6
XCAM487884 Xanthomonas campestris pv. paulliniae6
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-106
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80046
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339136
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3066
XAUT78245 ncbi Xanthobacter autotrophicus Py25
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106336
VFIS312309 ncbi Vibrio fischeri ES1145
VEIS391735 ncbi Verminephrobacter eiseniae EF01-26
VCHO345073 ncbi Vibrio cholerae O3956
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169616
TTUR377629 ncbi Teredinibacter turnerae T79016
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252596
TCRU317025 ncbi Thiomicrospira crunogena XCL-25
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT26
SSP94122 ncbi Shewanella sp. ANA-36
SSON300269 ncbi Shigella sonnei Ss0466
SSED425104 ncbi Shewanella sediminis HAW-EB36
SPRO399741 ncbi Serratia proteamaculans 5686
SPEA398579 ncbi Shewanella pealeana ATCC 7003456
SONE211586 ncbi Shewanella oneidensis MR-16
SMEL266834 ncbi Sinorhizobium meliloti 10215
SMED366394 ncbi Sinorhizobium medicae WSM4195
SLOI323850 ncbi Shewanella loihica PV-46
SHIGELLA ncbi Shigella flexneri 2a str. 2457T6
SHAL458817 ncbi Shewanella halifaxensis HAW-EB46
SGLO343509 ncbi Sodalis glossinidius morsitans6
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB5
SFLE373384 ncbi Shigella flexneri 5 str. 84016
SFLE198214 ncbi Shigella flexneri 2a str. 3016
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4766
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B676
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91506
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SDYS300267 ncbi Shigella dysenteriae Sd1976
SDEN318161 ncbi Shewanella denitrificans OS2176
SDEG203122 ncbi Saccharophagus degradans 2-406
SBOY300268 ncbi Shigella boydii Sb2276
SBAL402882 ncbi Shewanella baltica OS1856
SBAL399599 ncbi Shewanella baltica OS1956
SALA317655 ncbi Sphingopyxis alaskensis RB22565
RSOL267608 ncbi Ralstonia solanacearum GMI10006
RPAL316058 ncbi Rhodopseudomonas palustris HaA25
RPAL316057 ncbi Rhodopseudomonas palustris BisB55
RPAL316056 ncbi Rhodopseudomonas palustris BisB185
RPAL316055 ncbi Rhodopseudomonas palustris BisA535
RPAL258594 ncbi Rhodopseudomonas palustris CGA0095
RMET266264 ncbi Ralstonia metallidurans CH346
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38415
RFER338969 ncbi Rhodoferax ferrireducens T1186
REUT381666 ncbi Ralstonia eutropha H166
REUT264198 ncbi Ralstonia eutropha JMP1346
RETL347834 ncbi Rhizobium etli CFN 425
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30006
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a6
PSTU379731 ncbi Pseudomonas stutzeri A15016
PSP56811 Psychrobacter sp.5
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-15
PSP296591 ncbi Polaromonas sp. JS6666
PPUT76869 ncbi Pseudomonas putida GB-16
PPUT351746 ncbi Pseudomonas putida F16
PPUT160488 ncbi Pseudomonas putida KT24405
PPRO298386 ncbi Photobacterium profundum SS96
PNAP365044 ncbi Polaromonas naphthalenivorans CJ26
PMUL272843 ncbi Pasteurella multocida multocida Pm705
PMEN399739 ncbi Pseudomonas mendocina ymp6
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO16
PING357804 ncbi Psychromonas ingrahamii 375
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1256
PFLU220664 ncbi Pseudomonas fluorescens Pf-56
PFLU216595 ncbi Pseudomonas fluorescens SBW256
PFLU205922 ncbi Pseudomonas fluorescens Pf0-16
PENT384676 ncbi Pseudomonas entomophila L486
PCRY335284 ncbi Psychrobacter cryohalolentis K55
PATL342610 ncbi Pseudoalteromonas atlantica T6c6
PARC259536 ncbi Psychrobacter arcticus 273-45
PAER208964 ncbi Pseudomonas aeruginosa PAO16
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA146
OCAR504832 ncbi Oligotropha carboxidovorans OM55
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2555
NOCE323261 ncbi Nitrosococcus oceani ATCC 197076
NMUL323848 ncbi Nitrosospira multiformis ATCC 251966
NMEN374833 ncbi Neisseria meningitidis 0534425
NMEN272831 ncbi Neisseria meningitidis FAM185
NMEN122587 ncbi Neisseria meningitidis Z24915
NMEN122586 ncbi Neisseria meningitidis MC585
NHAM323097 ncbi Nitrobacter hamburgensis X145
NGON242231 ncbi Neisseria gonorrhoeae FA 10905
NEUT335283 ncbi Nitrosomonas eutropha C916
NEUR228410 ncbi Nitrosomonas europaea ATCC 197186
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124445
MXAN246197 ncbi Myxococcus xanthus DK 16226
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E5
MSP409 Methylobacterium sp.6
MSP400668 ncbi Marinomonas sp. MWYL16
MPET420662 ncbi Methylibium petroleiphilum PM16
MMAR394221 ncbi Maricaulis maris MCS106
MFLA265072 ncbi Methylobacillus flagellatus KT6
MEXT419610 ncbi Methylobacterium extorquens PA15
MCAP243233 ncbi Methylococcus capsulatus Bath6
MAQU351348 ncbi Marinobacter aquaeolei VT85
LPNE400673 ncbi Legionella pneumophila Corby5
LPNE297246 ncbi Legionella pneumophila Paris5
LPNE297245 ncbi Legionella pneumophila Lens5
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 15
LCHO395495 ncbi Leptothrix cholodnii SP-66
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785786
JSP375286 ncbi Janthinobacterium sp. Marseille6
ILOI283942 ncbi Idiomarina loihiensis L2TR6
HSOM228400 ncbi Haemophilus somnus 23365
HSOM205914 ncbi Haemophilus somnus 129PT5
HHAL349124 ncbi Halorhodospira halophila SL15
HCHE349521 ncbi Hahella chejuensis KCTC 23966
HARS204773 ncbi Herminiimonas arsenicoxydans6
ESP42895 Enterobacter sp.6
EFER585054 ncbi Escherichia fergusonii ATCC 354696
ECOO157 ncbi Escherichia coli O157:H7 EDL9336
ECOL83334 Escherichia coli O157:H76
ECOL585397 ncbi Escherichia coli ED1a6
ECOL585057 ncbi Escherichia coli IAI396
ECOL585056 ncbi Escherichia coli UMN0266
ECOL585055 ncbi Escherichia coli 559896
ECOL585035 ncbi Escherichia coli S886
ECOL585034 ncbi Escherichia coli IAI16
ECOL481805 ncbi Escherichia coli ATCC 87396
ECOL469008 ncbi Escherichia coli BL21(DE3)6
ECOL439855 ncbi Escherichia coli SMS-3-56
ECOL413997 ncbi Escherichia coli B str. REL6066
ECOL409438 ncbi Escherichia coli SE116
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI896
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A6
ECOL316407 ncbi Escherichia coli K-12 substr. W31106
ECOL199310 ncbi Escherichia coli CFT0736
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10436
DARO159087 ncbi Dechloromonas aromatica RCB6
CVIO243365 ncbi Chromobacterium violaceum ATCC 124726
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA5
CSP78 Caulobacter sp.5
CSAL290398 ncbi Chromohalobacter salexigens DSM 30436
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)5
CPSY167879 ncbi Colwellia psychrerythraea 34H5
CJAP155077 Cellvibrio japonicus6
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1115
CBUR360115 ncbi Coxiella burnetii RSA 3315
CBUR227377 ncbi Coxiella burnetii RSA 4935
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN5
CBLO203907 ncbi Candidatus Blochmannia floridanus5
BVIE269482 ncbi Burkholderia vietnamiensis G46
BTHA271848 ncbi Burkholderia thailandensis E2646
BSP376 Bradyrhizobium sp.6
BSP36773 Burkholderia sp.6
BPSE320373 ncbi Burkholderia pseudomallei 6686
BPSE320372 ncbi Burkholderia pseudomallei 1710b6
BPSE272560 ncbi Burkholderia pseudomallei K962436
BPET94624 Bordetella petrii6
BPER257313 ncbi Bordetella pertussis Tohama I6
BPAR257311 ncbi Bordetella parapertussis 128226
BMAL320389 ncbi Burkholderia mallei NCTC 102476
BMAL320388 ncbi Burkholderia mallei SAVP16
BMAL243160 ncbi Burkholderia mallei ATCC 233446
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1105
BCEN331272 ncbi Burkholderia cenocepacia HI24246
BCEN331271 ncbi Burkholderia cenocepacia AU 10546
BBRO257310 ncbi Bordetella bronchiseptica RB506
BAMB398577 ncbi Burkholderia ambifaria MC40-66
BAMB339670 ncbi Burkholderia ambifaria AMMD6
ASP76114 ncbi Aromatoleum aromaticum EbN16
ASP62977 ncbi Acinetobacter sp. ADP15
ASP62928 ncbi Azoarcus sp. BH726
ASP232721 ncbi Acidovorax sp. JS426
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4496
AHYD196024 Aeromonas hydrophila dhakensis6
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232706
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-16
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C5
ACAU438753 ncbi Azorhizobium caulinodans ORS 5715
ABOR393595 ncbi Alcanivorax borkumensis SK26
ABAU360910 ncbi Bordetella avium 197N6
AAVE397945 ncbi Acidovorax citrulli AAC00-16


Names of the homologs of the genes in the group in each of these orgs
  EG11569   EG10985   EG10691   EG10523   EG10048   EG10047   
YPSE349747 YPSIP31758_3441YPSIP31758_3442YPSIP31758_3443YPSIP31758_3444YPSIP31758_3446YPSIP31758_3445
YPSE273123 YPTB0636YPTB0635YPTB0634YPTB0633YPTB0631YPTB0632
YPES386656 YPDSF_3139YPDSF_3140YPDSF_3141YPDSF_3142YPDSF_3144YPDSF_3143
YPES377628 YPN_0369YPN_0368YPN_0367YPN_0366YPN_0364YPN_0365
YPES360102 YPA_4089YPA_4088YPA_4087YPA_4086YPA_4084YPA_4085
YPES349746 YPANGOLA_A0769YPANGOLA_A0770YPANGOLA_A0771YPANGOLA_A0772YPANGOLA_A0774YPANGOLA_A0773
YPES214092 YPO0495YPO0494YPO0493YPO0492YPO0490YPO0491
YPES187410 Y3680Y3681Y3682Y3683Y3685Y3684
YENT393305 YE0633YE0632YE0631YE0630YE0628YE0629
XORY360094 XOOORF_1159XOOORF_1158XOOORF_1157XOOORF_1156XOOORF_1154XOOORF_1155
XORY342109 XOO3535XOO3536XOO3537XOO3538XOO3540XOO3539
XORY291331 XOO3745XOO3746XOO3747XOO3748XOO3750XOO3749
XFAS405440 XFASM12_2012XFASM12_2011XFASM12_2010XFASM12_1352XFASM12_1354XFASM12_1353
XFAS183190 PD_1836PD_1835PD_1834PD_1208PD_1210PD_1209
XFAS160492 XF0837XF0838XF0839XF2148XF2150XF2149
XCAM487884 XCC-B100_3557XCC-B100_3558XCC-B100_3559XCC-B100_3560XCC-B100_3562XCC-B100_3561
XCAM316273 XCAORF_0974XCAORF_0973XCAORF_0972XCAORF_0971XCAORF_0969XCAORF_0970
XCAM314565 XC_3437XC_3438XC_3439XC_3440XC_3442XC_3441
XCAM190485 XCC0794XCC0793XCC0792XCC0791XCC0789XCC0790
XAXO190486 XAC0866XAC0865XAC0864XAC0863XAC0861XAC0862
XAUT78245 XAUT_2836XAUT_3112XAUT_2834XAUT_2833XAUT_0470
VVUL216895 VV1_0660VV1_0661VV1_0662VV1_0663VV1_0665VV1_0664
VVUL196600 VV0481VV0480VV0479VV0478VV0476VV0477
VPAR223926 VP0339VP0338VP0337VP0336VP0334VP0335
VFIS312309 VF0289VF0288VF0287VF0286VF0285
VEIS391735 VEIS_4812VEIS_4811VEIS_3936VEIS_4810VEIS_1340VEIS_0586
VCHO345073 VC0395_A2864VC0395_A2863VC0395_A2862VC0395_A2861VC0395_A2859VC0395_A2860
VCHO VC0446VC0445VC0444VC0443VC0441VC0442
TTUR377629 TERTU_3142TERTU_3143TERTU_3144TERTU_3145TERTU_3147TERTU_3146
TDEN292415 TBD_2337TBD_2338TBD_2339TBD_2340TBD_0168TBD_2231
TCRU317025 TCR_1654TCR_1655TCR_1656TCR_1657TCR_1658
STYP99287 STM0093STM0092STM0091STM0090STM0088STM0089
SSP94122 SHEWANA3_3206SHEWANA3_3207SHEWANA3_3208SHEWANA3_3209SHEWANA3_3211SHEWANA3_3210
SSON300269 SSO_0062SSO_0061SSO_0060SSO_0059SSO_0057SSO_0058
SSED425104 SSED_0967SSED_0966SSED_0965SSED_0964SSED_0962SSED_0963
SPRO399741 SPRO_0727SPRO_0726SPRO_0725SPRO_0724SPRO_0722SPRO_0723
SPEA398579 SPEA_0865SPEA_0864SPEA_0863SPEA_0862SPEA_0860SPEA_0861
SONE211586 SO_3636SO_3637SO_3638SO_3639SO_3641SO_3640
SMEL266834 SMC00582SMC00580SMC00579SMB21213SMC02135
SMED366394 SMED_0763SMED_0761SMED_0760SMED_4702SMED_0130
SLOI323850 SHEW_0882SHEW_0881SHEW_0880SHEW_0879SHEW_0877SHEW_0878
SHIGELLA G7V-674SURAPDXAKSGAAPAHAPAG
SHAL458817 SHAL_0918SHAL_0917SHAL_0916SHAL_0915SHAL_0913SHAL_0914
SGLO343509 SG0427SG0426SG0425SG0424SG0422SG0423
SFUM335543 SFUM_1670SFUM_3480SFUM_1601SFUM_3312SFUM_1247
SFLE373384 SFV_0048SFV_0047SFV_0046SFV_0045SFV_0043SFV_0044
SFLE198214 AAN41717.1AAN41716.1AAN41715.1AAN41714.1AAN41712.1AAN41713.1
SENT454169 SEHA_C0099SEHA_C0098SEHA_C0097SEHA_C0096SEHA_C0094SEHA_C0095
SENT321314 SCH_0088SCH_0087SCH_0086SCH_0085SCH_0083SCH_0084
SENT295319 SPA0094SPA0093SPA0092SPA0091SPA0089SPA0090
SENT220341 STY0108STY0107STY0106STY0105STY0103STY0104
SENT209261 T0096T0095T0094T0093T0091T0092
SDYS300267 SDY_0079SDY_0078SDY_0077SDY_0076SDY_0074SDY_0075
SDEN318161 SDEN_2885SDEN_2886SDEN_2887SDEN_2888SDEN_2890SDEN_2889
SDEG203122 SDE_0740SDE_0739SDE_0738SDE_0737SDE_0735SDE_0736
SBOY300268 SBO_0043SBO_0042SBO_0041SBO_0040SBO_0038SBO_0039
SBAL402882 SHEW185_1049SHEW185_1048SHEW185_1047SHEW185_1046SHEW185_1044SHEW185_1045
SBAL399599 SBAL195_1082SBAL195_1081SBAL195_1080SBAL195_1079SBAL195_1077SBAL195_1078
SALA317655 SALA_1762SALA_1476SALA_1477SALA_1478SALA_1087
RSOL267608 RSC0515RSC0516RSC0517RSC0518RSC0681RSC2878
RPAL316058 RPB_2478RPB_0529RPB_2476RPB_2475RPB_0787
RPAL316057 RPD_2968RPD_2969RPD_2970RPD_2971RPD_0898
RPAL316056 RPC_2311RPC_0525RPC_2309RPC_2308RPC_4913
RPAL316055 RPE_3294RPE_0147RPE_3296RPE_3297RPE_4881
RPAL258594 RPA3063RPA0511RPA3065RPA3066RPA4770
RMET266264 RMET_0436RMET_0437RMET_0438RMET_0439RMET_2736RMET_3175
RLEG216596 RL1567RL1565RL1564RL3129RL0553
RFER338969 RFER_0098RFER_0097RFER_3565RFER_0096RFER_3027RFER_0531
REUT381666 H16_A0511H16_A0512H16_A0513H16_A0514H16_A2910H16_A3316
REUT264198 REUT_A0497REUT_A0498REUT_A0499REUT_A0500REUT_A0711REUT_A3020
RETL347834 RHE_CH01452RHE_CH01450RHE_CH01449RHE_CH03239RHE_CH00521
PSYR223283 PSPTO_0554PSPTO_0553PSPTO_0552PSPTO_0551PSPTO_0549PSPTO_0550
PSYR205918 PSYR_4624PSYR_4625PSYR_4626PSYR_4627PSYR_4629PSYR_4628
PSTU379731 PST_0729PST_0728PST_0727PST_0726PST_0724PST_0725
PSP56811 PSYCPRWF_1754PSYCPRWF_1755PSYCPRWF_0906PSYCPRWF_0907PSYCPRWF_0908
PSP312153 PNUC_1869PNUC_1868PNUC_1867PNUC_0240PNUC_0150
PSP296591 BPRO_4863BPRO_4862BPRO_0819BPRO_4861BPRO_1518BPRO_4467
PPUT76869 PPUTGB1_0435PPUTGB1_0434PPUTGB1_0433PPUTGB1_0432PPUTGB1_0430PPUTGB1_0431
PPUT351746 PPUT_0438PPUT_0437PPUT_0436PPUT_0435PPUT_0433PPUT_0434
PPUT160488 PP_0403PP_0402PP_0401PP_0399PP_0400
PPRO298386 PBPRA0405PBPRA0404PBPRA0403PBPRA0402PBPRA0400PBPRA0401
PNAP365044 PNAP_4076PNAP_4075PNAP_0711PNAP_4074PNAP_3200PNAP_3661
PMUL272843 PM1600PM1208PM1650PM1209PM1210
PMEN399739 PMEN_4010PMEN_4011PMEN_4012PMEN_4013PMEN_4015PMEN_4014
PLUM243265 PLU0612PLU0611PLU0610PLU0609PLU0607PLU0608
PING357804 PING_1050PING_1049PING_1048PING_1047PING_1046
PHAL326442 PSHAA2632PSHAA2633PSHAA2634PSHAA2635PSHAA2637PSHAA2636
PFLU220664 PFL_5646PFL_5647PFL_5648PFL_5649PFL_5651PFL_5650
PFLU216595 PFLU5575PFLU5576PFLU5577PFLU5578PFLU5580PFLU5579
PFLU205922 PFL_5132PFL_5133PFL_5134PFL_5135PFL_5137PFL_5136
PENT384676 PSEEN0431PSEEN0430PSEEN0429PSEEN0428PSEEN0426PSEEN0427
PCRY335284 PCRYO_1698PCRYO_1699PCRYO_1458PCRYO_1456PCRYO_1455
PATL342610 PATL_3418PATL_3419PATL_3420PATL_3421PATL_3423PATL_3422
PARC259536 PSYC_1519PSYC_1520PSYC_0960PSYC_0961PSYC_0962
PAER208964 PA0595PA0594PA0593PA0592PA0590PA0591
PAER208963 PA14_07770PA14_07760PA14_07740PA14_07730PA14_07700PA14_07710
OCAR504832 OCAR_6355OCAR_4083OCAR_6357OCAR_6358OCAR_4657
NWIN323098 NWI_1679NWI_0389NWI_1681NWI_1682NWI_0135
NOCE323261 NOC_1724NOC_1723NOC_1722NOC_1721NOC_1345NOC_1346
NMUL323848 NMUL_A0521NMUL_A0520NMUL_A0519NMUL_A0518NMUL_A0206NMUL_A2372
NMEN374833 NMCC_1865NMCC_1864NMCC_1955NMCC_0656NMCC_0615
NMEN272831 NMC0275NMC0276NMC0186NMC0648NMC0610
NMEN122587 NMA2207NMA2206NMA0072NMA0902NMA0860
NMEN122586 NMB_0280NMB_0281NMB_0195NMB_0697NMB_0661
NHAM323097 NHAM_2342NHAM_0484NHAM_2344NHAM_2345NHAM_0223
NGON242231 NGO1715NGO1714NGO1786NGO0272NGO0231
NEUT335283 NEUT_1216NEUT_1217NEUT_1218NEUT_1219NEUT_1949NEUT_0842
NEUR228410 NE0881NE0882NE0883NE0884NE0613NE1573
NARO279238 SARO_0889SARO_0888SARO_0887SARO_0886SARO_2660
MXAN246197 MXAN_2708MXAN_0468MXAN_0467MXAN_2052MXAN_7163MXAN_1536
MSUC221988 MS2357MS0629MS0066MS0630MS0631
MSP409 M446_5100M446_2587M446_5101M446_5102M446_5084M446_6540
MSP400668 MMWYL1_1054MMWYL1_1053MMWYL1_1052MMWYL1_1051MMWYL1_1049MMWYL1_1050
MPET420662 MPE_A0202MPE_A0203MPE_A0846MPE_A0204MPE_A2854MPE_A3468
MMAR394221 MMAR10_1224MMAR10_1223MMAR10_1222MMAR10_1221MMAR10_2565MMAR10_0491
MFLA265072 MFLA_2149MFLA_2150MFLA_2151MFLA_2152MFLA_0467MFLA_2636
MEXT419610 MEXT_3648MEXT_1477MEXT_3638MEXT_2347MEXT_0370
MCAP243233 MCA_0601MCA_0602MCA_0603MCA_0604MCA_0159MCA_0241
MAQU351348 MAQU_3510MAQU_3509MAQU_3508MAQU_3507MAQU_3506
LPNE400673 LPC_0376LPC_0377LPC_0378LPC_3233LPC_3231
LPNE297246 LPP0375LPP0376LPP0377LPP2995LPP2993
LPNE297245 LPL0350LPL0351LPL0352LPL2855LPL2853
LPNE272624 LPG0297LPG0298LPG0299LPG2928LPG2926
LCHO395495 LCHO_3911LCHO_3912LCHO_1612LCHO_3913LCHO_2384LCHO_3900
KPNE272620 GKPORF_B4330GKPORF_B4329GKPORF_B4328GKPORF_B4327GKPORF_B4325GKPORF_B4326
JSP375286 MMA_0417MMA_0418MMA_0419MMA_0420MMA_2944MMA_0238
ILOI283942 IL2229IL2230IL2231IL2232IL2234IL2233
HSOM228400 HSM_0073HSM_0464HSM_1403HSM_0465HSM_0466
HSOM205914 HS_0205HS_1560HS_0925HS_1559HS_1558
HHAL349124 HHAL_1020HHAL_1021HHAL_1022HHAL_1023HHAL_1197
HCHE349521 HCH_06106HCH_06105HCH_06104HCH_06103HCH_06101HCH_06102
HARS204773 HEAR0366HEAR0367HEAR0368HEAR0369HEAR2734HEAR0204
ESP42895 ENT638_0603ENT638_0602ENT638_0601ENT638_0600ENT638_0598ENT638_0599
EFER585054 EFER_0065EFER_0064EFER_0063EFER_0062EFER_0060EFER_0061
ECOO157 G7E-6SURAPDXAKSGAAPAHAPAG
ECOL83334 ECS0059ECS0058ECS0057ECS0056ECS0054ECS0055
ECOL585397 ECED1_0055ECED1_0054ECED1_0053ECED1_0052ECED1_0050ECED1_0051
ECOL585057 ECIAI39_0057ECIAI39_0056ECIAI39_0055ECIAI39_0054ECIAI39_0052ECIAI39_0053
ECOL585056 ECUMN_0056ECUMN_0055ECUMN_0054ECUMN_0053ECUMN_0051ECUMN_0052
ECOL585055 EC55989_0054EC55989_0053EC55989_0052EC55989_0051EC55989_0049EC55989_0050
ECOL585035 ECS88_0059ECS88_0058ECS88_0057ECS88_0056ECS88_0054ECS88_0055
ECOL585034 ECIAI1_0056ECIAI1_0055ECIAI1_0054ECIAI1_0053ECIAI1_0051ECIAI1_0052
ECOL481805 ECOLC_3601ECOLC_3602ECOLC_3603ECOLC_3604ECOLC_3606ECOLC_3605
ECOL469008 ECBD_3561ECBD_3562ECBD_3563ECBD_3564ECBD_3566ECBD_3565
ECOL439855 ECSMS35_0058ECSMS35_0057ECSMS35_0056ECSMS35_0055ECSMS35_0053ECSMS35_0054
ECOL413997 ECB_00058ECB_00057ECB_00056ECB_00055ECB_00053ECB_00054
ECOL409438 ECSE_0055ECSE_0054ECSE_0053ECSE_0052ECSE_0050ECSE_0051
ECOL405955 APECO1_1928APECO1_1929APECO1_1930APECO1_1931APECO1_1933APECO1_1932
ECOL364106 UTI89_C0061UTI89_C0060UTI89_C0059UTI89_C0058UTI89_C0056UTI89_C0057
ECOL362663 ECP_0057ECP_0054ECP_0053ECP_0051ECP_0052
ECOL331111 ECE24377A_0058ECE24377A_0057ECE24377A_0056ECE24377A_0055ECE24377A_0053ECE24377A_0054
ECOL316407 ECK0055:JW0053:B0054ECK0054:JW0052:B0053ECK0053:JW0051:B0052ECK0052:JW0050:B0051ECK0050:JW0048:B0049ECK0051:JW0049:B0050
ECOL199310 C0067C0066C0065C0064C0061C0063
ECAR218491 ECA3856ECA3857ECA3858ECA3859ECA3861ECA3860
DARO159087 DARO_3659DARO_3658DARO_3657DARO_3656DARO_3932DARO_3484
CVIO243365 CV_4229CV_4230CV_4231CV_0121CV_4067CV_2183
CVES412965 COSY_0491COSY_0501COSY_0502COSY_0504COSY_0503
CSP78 CAUL_2528CAUL_2527CAUL_2526CAUL_2525CAUL_1660
CSAL290398 CSAL_0917CSAL_0918CSAL_0919CSAL_0920CSAL_0922CSAL_0921
CRUT413404 RMAG_0535RMAG_0546RMAG_0547RMAG_0549RMAG_0548
CPSY167879 CPS_4523CPS_4524CPS_4525CPS_4526CPS_4527
CJAP155077 CJA_0858CJA_0859CJA_0860CJA_0861CJA_0863CJA_0862
CBUR434922 COXBU7E912_2076COXBU7E912_2077COXBU7E912_2078COXBU7E912_2079COXBU7E912_2085
CBUR360115 COXBURSA331_A0106COXBURSA331_A0105COXBURSA331_A0104COXBURSA331_A0103COXBURSA331_A0097
CBUR227377 CBU_1978CBU_1980CBU_1981CBU_1982CBU_1987
CBLO291272 BPEN_133BPEN_132BPEN_131BPEN_130BPEN_129
CBLO203907 BFL129BFL128BFL127BFL126BFL125
BVIE269482 BCEP1808_2812BCEP1808_2811BCEP1808_2810BCEP1808_2809BCEP1808_0804BCEP1808_0514
BTHA271848 BTH_I0575BTH_I0576BTH_I0577BTH_I0578BTH_I1468BTH_I2906
BSP376 BRADO3325BRADO0589BRADO3323BRADO3322BRADO3710BRADO6774
BSP36773 BCEP18194_A6038BCEP18194_A6037BCEP18194_A6036BCEP18194_A6035BCEP18194_A3968BCEP18194_A3624
BPSE320373 BURPS668_0692BURPS668_0693BURPS668_0694BURPS668_0695BURPS668_3106BURPS668_3552
BPSE320372 BURPS1710B_A0917BURPS1710B_A0918BURPS1710B_A0919BURPS1710B_A0920BURPS1710B_A3428BURPS1710B_A3854
BPSE272560 BPSL0658BPSL0659BPSL0660BPSL0661BPSL2687BPSL3047
BPET94624 BPET0760BPET0761BPET2752BPET0762BPET0564BPET0323
BPER257313 BP3329BP3330BP2789BP3331BP0324BP3267
BPAR257311 BPP3667BPP3666BPP2474BPP3665BPP3927BPP4153
BMAL320389 BMA10247_2421BMA10247_2422BMA10247_2423BMA10247_2424BMA10247_1853BMA10247_A1907
BMAL320388 BMASAVP1_A2737BMASAVP1_A2736BMASAVP1_A2735BMASAVP1_A2734BMASAVP1_A0922BMASAVP1_0641
BMAL243160 BMA_0208BMA_0209BMA_0210BMA_0211BMA_1991BMA_A0536
BJAP224911 BLL4105BLR0205BLL4103BLL4102BLL1101
BCEN331272 BCEN2424_2711BCEN2424_2710BCEN2424_2709BCEN2424_2708BCEN2424_0870BCEN2424_0537
BCEN331271 BCEN_2099BCEN_2098BCEN_2097BCEN_2096BCEN_0388BCEN_2568
BBRO257310 BB4102BB4101BB1921BB4100BB4400BB4623
BAMB398577 BAMMC406_2629BAMMC406_2628BAMMC406_2627BAMMC406_2626BAMMC406_0760BAMMC406_0466
BAMB339670 BAMB_2763BAMB_2762BAMB_2761BAMB_2760BAMB_0743BAMB_0442
ASP76114 EBA1141EBA1140EBA1139EBA1138EBA1627EBA1421
ASP62977 ACIAD2371ACIAD2372ACIAD3010ACIAD3009ACIAD3008
ASP62928 AZO2887AZO2886AZO2885AZO2884AZO0853AZO0900
ASP232721 AJS_4112AJS_4111AJS_0787AJS_4110AJS_1143AJS_0360
ASAL382245 ASA_3347ASA_3348ASA_3349ASA_3350ASA_3352ASA_3351
AHYD196024 AHA_0945AHA_0944AHA_0943AHA_0942AHA_0940AHA_0941
AFER243159 AFE_0076AFE_0075AFE_2861AFE_2859AFE_0904AFE_0368
AEHR187272 MLG_0199MLG_0200MLG_0201MLG_0267MLG_0223MLG_0222
ADEH290397 ADEH_4335ADEH_4336ADEH_3685ADEH_2707ADEH_4031
ACAU438753 AZC_4323AZC_0311AZC_4321AZC_4320AZC_4024
ABOR393595 ABO_2045ABO_2046ABO_2047ABO_2048ABO_2050ABO_2049
ABAU360910 BAV0694BAV0695BAV2168BAV0696BAV3007BAV3232
AAVE397945 AAVE_4764AAVE_4763AAVE_3698AAVE_4762AAVE_1149AAVE_0437


Organism features enriched in list (features available for 188 out of the 199 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 2.171e-71092
Disease:Bubonic_plague 0.001064566
Disease:Dysentery 0.001064566
Disease:Gastroenteritis 0.00096281013
Endospores:No 2.254e-1035211
Endospores:Yes 1.332e-7253
GC_Content_Range4:0-40 1.573e-2912213
GC_Content_Range4:40-60 3.693e-8102224
GC_Content_Range4:60-100 2.634e-874145
GC_Content_Range7:0-30 1.368e-6247
GC_Content_Range7:30-40 9.270e-2110166
GC_Content_Range7:50-60 9.636e-960107
GC_Content_Range7:60-70 6.163e-1073134
Genome_Size_Range5:0-2 1.688e-254155
Genome_Size_Range5:2-4 0.000078744197
Genome_Size_Range5:4-6 2.622e-22111184
Genome_Size_Range5:6-10 0.00001072947
Genome_Size_Range9:0-1 0.0076345327
Genome_Size_Range9:1-2 5.918e-241128
Genome_Size_Range9:2-3 0.000822425120
Genome_Size_Range9:4-5 2.011e-75396
Genome_Size_Range9:5-6 1.343e-125888
Genome_Size_Range9:6-8 1.992e-62638
Gram_Stain:Gram_Neg 1.168e-33171333
Habitat:Multiple 0.004202270178
Habitat:Specialized 0.0018565853
Motility:No 2.604e-1315151
Motility:Yes 1.877e-13127267
Optimal_temp.:- 0.009978694257
Optimal_temp.:25-30 2.853e-61619
Optimal_temp.:35-37 0.00096281013
Optimal_temp.:37 0.005654424106
Oxygen_Req:Anaerobic 3.353e-135102
Oxygen_Req:Facultative 1.013e-793201
Pathogenic_in:Plant 0.00098861115
Shape:Coccus 2.936e-7882
Shape:Rod 3.359e-15154347
Shape:Spiral 0.0001656234
Temp._range:Mesophilic 0.0014626165473
Temp._range:Psychrophilic 0.000652389
Temp._range:Thermophilic 0.0000132135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 271
Effective number of orgs (counting one per cluster within 468 clusters): 210

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM41
WPIP80849 Wolbachia endosymbiont of Brugia malayi1
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 101
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB41
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332231
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB81
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX1
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSP84588 ncbi Synechococcus sp. WH 81021
SSP64471 ncbi Synechococcus sp. CC93111
SSP1131 Synechococcus sp. CC96051
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SPNE488221 ncbi Streptococcus pneumoniae 705851
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-61
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-141
SPNE171101 ncbi Streptococcus pneumoniae R61
SPNE170187 ncbi Streptococcus pneumoniae G541
SPNE1313 Streptococcus pneumoniae1
SMUT210007 ncbi Streptococcus mutans UA1591
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SGOR29390 Streptococcus gordonii Challis1
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122281
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SCO ncbi Streptomyces coelicolor A3(2)1
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SARE391037 ncbi Salinispora arenicola CNS-2051
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington1
RSP357808 ncbi Roseiflexus sp. RS-10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa1
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith1
RPRO272947 ncbi Rickettsia prowazekii Madrid E1
RMAS416276 ncbi Rickettsia massiliae MTU51
RCON272944 ncbi Rickettsia conorii Malish 71
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RCAN293613 ncbi Rickettsia canadensis McKiel1
RALB246199 Ruminococcus albus 81
RAKA293614 ncbi Rickettsia akari Hartford1
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI1
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PMOB403833 ncbi Petrotoga mobilis SJ951
PMAR93060 ncbi Prochlorococcus marinus MIT 92151
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96011
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong1
NSP35761 Nocardioides sp.0
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NFAR247156 ncbi Nocardia farcinica IFM 101520
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23651
LMON169963 ncbi Listeria monocytogenes EGD-e1
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LINN272626 ncbi Listeria innocua Clip112621
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
LACI272621 ncbi Lactobacillus acidophilus NCFM1
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HHEP235279 ncbi Helicobacter hepaticus ATCC 514491
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FMAG334413 ncbi Finegoldia magna ATCC 293281
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
EFAE226185 ncbi Enterococcus faecalis V5831
ECAN269484 ncbi Ehrlichia canis Jake1
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRED349161 ncbi Desulfotomaculum reducens MI-11
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E881
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CPER289380 ncbi Clostridium perfringens SM1011
CPER195103 ncbi Clostridium perfringens ATCC 131241
CPER195102 ncbi Clostridium perfringens 131
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CKLU431943 ncbi Clostridium kluyveri DSM 5551
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CJEI306537 ncbi Corynebacterium jeikeium K4111
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFET360106 ncbi Campylobacter fetus fetus 82-401
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C1
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138261
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CBOT441771 ncbi Clostridium botulinum A str. Hall1
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4001
BTUR314724 ncbi Borrelia turicatae 91E1350
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG10
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
AAUR290340 ncbi Arthrobacter aurescens TC11


Names of the homologs of the genes in the group in each of these orgs
  EG11569   EG10985   EG10691   EG10523   EG10048   EG10047   
ZMOB264203 ZMO1313
WPIP80849 WB_0062
UURE95667
UURE95664 UUR10_0706
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852
TTHE262724
TTEN273068 TTE0113
TSP28240
TSP1755
TPSE340099 TETH39_1674
TPET390874 TPET_0187
TPEN368408
TPAL243276
TMAR243274 TM_0742
TLET416591
TKOD69014
TFUS269800 TFU_2592
TDEN326298 TMDEN_0895
TDEN243275
TACI273075
STRO369723 STROP_0782
STOK273063
STHE322159 STER_1772
STHE299768 STR1799
STHE264199 STU1799
SSUI391296 SSU98_2005
SSUI391295 SSU05_2001
SSP84588 SYNW0035OR2390
SSP64471 GSYN0035
SSP1131 SYNCC9605_0035
SSOL273057
SSAP342451 SSP2263
SPYO370554
SPYO370553 MGAS2096_SPY0240
SPYO370552 MGAS10270_SPY0222
SPYO370551 MGAS9429_SPY0223
SPYO319701 M28_SPY0216
SPYO293653 M5005_SPY0222
SPYO286636 M6_SPY0254
SPYO198466
SPYO193567
SPYO186103 SPYM18_0246
SPYO160490 SPY0262
SPNE488221 SP70585_2056
SPNE487214 SPH_2126
SPNE487213 SPT_1964
SPNE171101 SPR1799
SPNE170187 SPN09032
SPNE1313 SPJ_1977
SMUT210007 SMU_349
SMAR399550
SHAE279808 SH2518
SGOR29390 SGO_0193
SERY405948 SACE_4548
SEPI176280 SE_2290
SEPI176279 SERP0131
SCO SCO5973
SAVE227882 SAV2323
SAUR93062 SACOL0536
SAUR93061 SAOUHSC_00464
SAUR426430 NWMN_0456
SAUR418127 SAHV_0490
SAUR367830 SAUSA300_0470
SAUR359787 SAURJH1_0527
SAUR359786 SAURJH9_0514
SAUR282459 SAS0450
SAUR282458 SAR0494
SAUR273036 SAB0442
SAUR196620 MW0448
SAUR158879 SA0451
SAUR158878 SAV0493
SARE391037 SARE_0726
SAGA211110 GBS1822
SAGA208435 SAG_1779
SAGA205921 SAK_1801
SACI330779
RTYP257363 RT0666
RSP357808
RSAL288705
RRIC452659 RRIOWA_1216
RRIC392021 A1G_05635
RPRO272947 RP672
RMAS416276 RMA_1056
RCON272944 RC1022
RCAS383372
RCAN293613 A1E_04455
RALB246199 GRAORF_4326
RAKA293614 A1C_05200
PTOR263820
PTHE370438 PTH_0080
PPEN278197 PEPE_0269
PMOB403833 PMOB_1911
PMAR93060 P9215_00271
PMAR74546 PMT9312_0028
PMAR59920 PMN2A_1355
PMAR167555 NATL1_00271
PMAR167546 P9301ORF_0027
PMAR167542 P9515ORF_0027
PMAR167540 PMM0028
PMAR167539 PRO_0028
PMAR146891 A9601_00271
PISL384616
PHOR70601
PGIN242619 PG_2067
PFUR186497
PAST100379
PARS340102
PAER178306
PACN267747 PPA0296
PABY272844
OTSU357244 OTBS_0329
NSP35761
NSEN222891
NPHA348780
NFAR247156
MVAN350058 MVAN_1103
MTUB419947
MTUB336982
MTHE349307
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP189918 MKMS_4349
MSP164757 MJLS_4642
MSP164756
MSME246196 MSMEG_5438
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632 MSC_0004
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311 MFL005
MCAP340047 MCAP_0004
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243 MAV_1148
MART243272
MAEO419665
MACE188937
MABS561007
LXYL281090
LWEL386043 LWE0157
LSAK314315 LSA1655
LREU557436 LREU_0213
LPLA220668
LMON265669 LMOF2365_0199
LMON169963 LMO0188
LMES203120
LLAC272623 L0363
LLAC272622 LACR_0718
LJOH257314 LJ_0205
LINT267671 LIC_12820
LINT189518 LA0800
LINN272626 LIN0227
LHEL405566 LHV_0232
LGAS324831 LGAS_0208
LDEL390333 LDB0345
LDEL321956 LBUL_0300
LCAS321967 LSEI_2593
LBRE387344 LVIS_0458
LBOR355277 LBJ_0753
LBOR355276 LBL_2325
LBIF456481 LEPBI_I1048
LBIF355278 LBF_1014
LACI272621 LBA0216
KRAD266940 KRAD_4366
IHOS453591
HWAL362976 HQ3209A
HSP64091
HSAL478009
HMUK485914 HMUK_1796
HMAR272569 PNG7301
HHEP235279 HH_0861
HBUT415426
FSP1855
FSP106370
FNUC190304 FN0226
FNOD381764 FNOD_1028
FMAG334413 FMG_0482
FALN326424
ERUM302409 ERGA_CDS_08280
ERUM254945 ERWE_CDS_08390
EFAE226185 EF_0936
ECAN269484 ECAJ_0829
DSP255470
DSP216389
DRED349161 DRED_0077
DETH243164
CTRA471473
CTRA471472
CTET212717 CTC_00195
CSUL444179
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809 CPHY_3899
CPER289380 CPR_2526
CPER195103 CPF_2840
CPER195102 CPE2517
CPEL335992 SAR11_0711
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948 CMAQ_1186
CKOR374847 KCR_1493
CKLU431943 CKL_3762
CJEJ407148 C8J_1182
CJEJ360109 JJD26997_0486
CJEJ354242 CJJ81176_1253
CJEJ195099 CJE_1374
CJEJ192222 CJ1239
CJEI306537 JK1511
CHOM360107 CHAB381_1715
CGLU196627 CG1038
CFET360106 CFF8240_0681
CFEL264202
CEFF196164 CE0972
CDIP257309 DIP0875
CDES477974 DAUD_0045
CCUR360105
CCON360104 CCC13826_1327
CCAV227941
CBOT508765 CLL_A0116
CBOT441771 CLC_0128
CABO218497
BXEN266265 BXE_B2750
BTUR314724
BLON206672
BHER314723
BGAR290434
BBUR224326
BAPH372461 BCC_089
BAFZ390236
AYEL322098
AURANTIMONAS
ASP1667 ARTH_1035
APER272557
ANAE240017
ALAI441768
AFUL224325
ACEL351607
AAUR290340 AAUR_PTC10251


Organism features enriched in list (features available for 254 out of the 271 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00059815492
Arrangment:Clusters 5.375e-71717
Disease:Pharyngitis 0.001218888
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00009481111
Disease:Wide_range_of_infections 0.00009481111
Disease:bronchitis_and_pneumonitis 0.001218888
Endospores:No 1.466e-28155211
GC_Content_Range4:0-40 7.095e-20145213
GC_Content_Range4:40-60 2.997e-964224
GC_Content_Range4:60-100 0.000147945145
GC_Content_Range7:0-30 0.00002343447
GC_Content_Range7:30-40 5.452e-13111166
GC_Content_Range7:50-60 4.467e-1019107
GC_Content_Range7:60-70 3.083e-636134
GC_Content_Range7:70-100 0.0094091911
Genome_Size_Range5:0-2 1.540e-24121155
Genome_Size_Range5:2-4 0.007050598197
Genome_Size_Range5:4-6 3.124e-2426184
Genome_Size_Range5:6-10 0.0001757947
Genome_Size_Range9:0-1 0.00003732227
Genome_Size_Range9:1-2 1.261e-1899128
Genome_Size_Range9:2-3 3.824e-674120
Genome_Size_Range9:3-4 0.00601862477
Genome_Size_Range9:4-5 3.932e-111496
Genome_Size_Range9:5-6 7.975e-111288
Genome_Size_Range9:6-8 0.0000312538
Gram_Stain:Gram_Neg 2.984e-3375333
Gram_Stain:Gram_Pos 2.588e-19112150
Habitat:Host-associated 0.0004418108206
Habitat:Multiple 0.002194863178
Habitat:Specialized 0.00852913153
Habitat:Terrestrial 0.0001628431
Motility:No 2.078e-17110151
Motility:Yes 1.779e-1177267
Optimal_temp.:- 0.000037389257
Optimal_temp.:25-30 0.0002336119
Optimal_temp.:30-37 5.623e-61718
Optimal_temp.:37 0.003358758106
Oxygen_Req:Aerobic 0.000071760185
Oxygen_Req:Anaerobic 0.000023163102
Salinity:Non-halophilic 0.003358758106
Shape:Coccus 3.599e-116382
Shape:Irregular_coccus 5.375e-71717
Shape:Rod 1.340e-2097347
Shape:Sphere 0.00024151619
Shape:Spiral 0.00214252334
Temp._range:Hyperthermophilic 1.410e-62123
Temp._range:Thermophilic 0.00875022235



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GLYCOCAT-PWY (glycogen degradation I)2461790.7072
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181660.6956
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001940.6764
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951530.6735
PWY-5918 (heme biosynthesis I)2721830.6672
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861830.6331
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831420.6315
PWY-4041 (γ-glutamyl cycle)2791800.6292
PWY-1269 (CMP-KDO biosynthesis I)3251950.6284
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251590.6245
AST-PWY (arginine degradation II (AST pathway))1201080.6082
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911810.6076
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911420.6047
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961820.6029
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761350.6024
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491220.6005
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901790.5961
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391940.5925
PWY-5913 (TCA cycle variation IV)3011800.5777
TYRFUMCAT-PWY (tyrosine degradation I)1841350.5752
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481940.5743
PWY-5148 (acyl-CoA hydrolysis)2271500.5543
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911350.5525
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551590.5429
REDCITCYC (TCA cycle variation II)1741240.5250
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291810.5235
GLUCONSUPER-PWY (D-gluconate degradation)2291440.5059
P344-PWY (acrylonitrile degradation)2101360.5019
DAPLYSINESYN-PWY (lysine biosynthesis I)3421810.4965
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981960.4936
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81740.4926
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491490.4882
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491490.4882
PWY-5028 (histidine degradation II)130990.4869
PWY-5386 (methylglyoxal degradation I)3051670.4792
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001640.4697
GALACTITOLCAT-PWY (galactitol degradation)73670.4676
PWY-6087 (4-chlorocatechol degradation)2231360.4651
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94780.4614
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96790.4609
LIPASYN-PWY (phospholipases)2121310.4598
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4221970.4581
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651820.4572
P601-PWY (D-camphor degradation)95780.4564
PWY-46 (putrescine biosynthesis III)138990.4553
PWY-5340 (sulfate activation for sulfonation)3851870.4536
PWY-3162 (tryptophan degradation V (side chain pathway))94770.4518
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112860.4503
PWY0-981 (taurine degradation IV)106830.4502
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561060.4463
GLUCARDEG-PWY (D-glucarate degradation I)1521040.4445
PWY-5084 (2-ketoglutarate dehydrogenase complex)3261680.4402
PWY-5669 (phosphatidylethanolamine biosynthesis I)4161930.4394
PWY-6193 (3-chlorocatechol degradation II (ortho))1941210.4389
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135950.4335
PLPSAL-PWY (pyridoxal 5'-phosphate salvage pathway)3741810.4325
SO4ASSIM-PWY (sulfate reduction I (assimilatory))3111620.4314
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138960.4304
PWY-5188 (tetrapyrrole biosynthesis I)4391970.4284
GLYOXYLATE-BYPASS (glyoxylate cycle)1691090.4260
PWY-561 (superpathway of glyoxylate cycle)1621060.4258
PWYQT-4429 (CO2 fixation into oxaloacetate)2331320.4096
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135920.4084
PWY0-501 (lipoate biosynthesis and incorporation I)3851800.4040
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)2121230.4017



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG10985   EG10691   EG10523   EG10048   EG10047   
EG115690.999870.999850.9998570.9993970.999329
EG109850.9998090.9998440.999450.999403
EG106910.9999030.9994510.999369
EG105230.9996330.999517
EG100480.999579
EG10047



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PAIRWISE BLAST SCORES:

  EG11569   EG10985   EG10691   EG10523   EG10048   EG10047   
EG115690.0f0-----
EG10985-0.0f0----
EG10691--0.0f0---
EG10523---0.0f0--
EG10048----0.0f0-
EG10047-----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10047 EG10048 EG10523 EG10691 EG10985 EG11569 (centered at EG10691)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG11569   EG10985   EG10691   EG10523   EG10048   EG10047   
252/623268/623340/623412/623263/623205/623
AAEO224324:0:Tyes81-0---
AAUR290340:1:Tyes--0---
AAVE397945:0:Tyes42514250320242496970
ABAC204669:0:Tyes-2268--0-
ABAU360910:0:Tyes011476223212547
ABOR393595:0:Tyes012354
ABUT367737:0:Tyes532-0---
ACAU438753:0:Tyes4065040634062-3757
ACRY349163:8:Tyes-149401493-1531
ADEH290397:0:Tyes-1639164098901336
AEHR187272:0:Tyes012682423
AFER243159:0:Tyes1027472745814290
AHYD196024:0:Tyes543201
AMAR234826:0:Tyes---0-350
AMAR329726:9:Tyes--277903137-
AMET293826:0:Tyes--860--
AORE350688:0:Tyes--0113--
APHA212042:0:Tyes---0-470
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BCER315749:1:Tyes-736-0--
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ZMOB264203:0:Tyes--0---



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