CANDIDATE ID: 169

CANDIDATE ID: 169

NUMBER OF GENES: 6
AVERAGE SCORE:    9.9964453e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    3.3333333e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages




GENE LIST:

- G7379 (yfjY) (b2644)
   Products of gene:
     - G7379-MONOMER (CP4-57 prophage; predicted DNA repair protein)

- G7082 (yeeS) (b2002)
   Products of gene:
     - G7082-MONOMER (CP4-44 prophage; predicted DNA repair protein)

- G6122 (ykfG) (b0247)
   Products of gene:
     - G6122-MONOMER (CP4-6 prophage; predicted DNA repair protein)

- EG11312 (yicR) (b3638)
   Products of gene:
     - EG11312-MONOMER (hypothetical protein)

- EG10886 (rpmB) (b3637)
   Products of gene:
     - EG10886-MONOMER (50S ribosomal subunit protein L28)
     - CPLX0-3962 (50S ribosomal subunit)
     - CPLX0-3964 (ribosome)

- EG10004 (dfp) (b3639)
   Products of gene:
     - EG10004-MONOMER (Dfp)
     - CPLX0-341 (fused 4'-phosphopantothenoylcysteine decarboxylase and phosphopantothenoylcysteine synthetase)
       Reactions:
        D-4'-phosphopantothenate + L-cysteine + CTP  ->  diphosphate + CMP + R-4'-phosphopantothenoyl-L-cysteine + H+
         In pathways
         PANTOSYN-PWY (pantothenate and coenzyme A biosynthesis I)
         PWY-4221 (PWY-4221)
         PWY-4242 (PWY-4242)
         COA-PWY (coenzyme A biosynthesis)
        R-4'-phosphopantothenoyl-L-cysteine + H+  ->  4'-phosphopantetheine + CO2
         In pathways
         PANTOSYN-PWY (pantothenate and coenzyme A biosynthesis I)
         PWY-4221 (PWY-4221)
         PWY-4242 (PWY-4242)
         COA-PWY (coenzyme A biosynthesis)



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ORGANISMS CONTAINING AT LEAST 5 GENES FROM THE GROUP:

Total number of orgs: 243
Effective number of orgs (counting one per cluster within 468 clusters): 171

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317586
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329536
YPES386656 ncbi Yersinia pestis Pestoides F6
YPES377628 ncbi Yersinia pestis Nepal5166
YPES360102 ncbi Yersinia pestis Antiqua6
YPES349746 ncbi Yersinia pestis Angola6
YPES214092 ncbi Yersinia pestis CO926
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80816
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A6
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110186
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103315
XFAS405440 ncbi Xylella fastidiosa M126
XFAS183190 ncbi Xylella fastidiosa Temecula16
XFAS160492 ncbi Xylella fastidiosa 9a5c6
XCAM487884 Xanthomonas campestris pv. paulliniae6
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-106
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80046
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339136
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3066
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106336
VFIS312309 ncbi Vibrio fischeri ES1146
VEIS391735 ncbi Verminephrobacter eiseniae EF01-26
VCHO345073 ncbi Vibrio cholerae O3956
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169616
TTUR377629 ncbi Teredinibacter turnerae T79016
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB45
TSP1755 Thermoanaerobacter sp.5
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332235
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252596
TCRU317025 ncbi Thiomicrospira crunogena XCL-26
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen5
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT26
STHE292459 ncbi Symbiobacterium thermophilum IAM 148635
SSP94122 ncbi Shewanella sp. ANA-36
SSP644076 Silicibacter sp. TrichCH4B6
SSP292414 ncbi Ruegeria sp. TM10406
SSED425104 ncbi Shewanella sediminis HAW-EB36
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153055
SPRO399741 ncbi Serratia proteamaculans 5686
SPEA398579 ncbi Shewanella pealeana ATCC 7003456
SONE211586 ncbi Shewanella oneidensis MR-16
SMEL266834 ncbi Sinorhizobium meliloti 10215
SLOI323850 ncbi Shewanella loihica PV-46
SLAC55218 Ruegeria lacuscaerulensis6
SHIGELLA ncbi Shigella flexneri 2a str. 2457T6
SHAL458817 ncbi Shewanella halifaxensis HAW-EB46
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14356
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3016
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4766
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B676
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91506
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SDYS300267 ncbi Shigella dysenteriae Sd1976
SDEN318161 ncbi Shewanella denitrificans OS2176
SDEG203122 ncbi Saccharophagus degradans 2-406
SBOY300268 ncbi Shigella boydii Sb2276
SBAL402882 ncbi Shewanella baltica OS1856
SBAL399599 ncbi Shewanella baltica OS1956
SAUR273036 ncbi Staphylococcus aureus RF1225
SALA317655 ncbi Sphingopyxis alaskensis RB22565
SACI56780 ncbi Syntrophus aciditrophicus SB5
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170255
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170295
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.16
RSOL267608 ncbi Ralstonia solanacearum GMI10006
RPOM246200 ncbi Ruegeria pomeroyi DSS-36
RPAL316058 ncbi Rhodopseudomonas palustris HaA25
RPAL316057 ncbi Rhodopseudomonas palustris BisB55
RPAL316056 ncbi Rhodopseudomonas palustris BisB185
RPAL316055 ncbi Rhodopseudomonas palustris BisA535
RPAL258594 ncbi Rhodopseudomonas palustris CGA0095
RMET266264 ncbi Ralstonia metallidurans CH345
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38415
RFER338969 ncbi Rhodoferax ferrireducens T1186
REUT381666 ncbi Ralstonia eutropha H166
REUT264198 ncbi Ralstonia eutropha JMP1346
RETL347834 ncbi Rhizobium etli CFN 426
RDEN375451 ncbi Roseobacter denitrificans OCh 1146
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30006
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a6
PSTU379731 ncbi Pseudomonas stutzeri A15016
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-16
PSP296591 ncbi Polaromonas sp. JS6666
PPUT76869 ncbi Pseudomonas putida GB-16
PPUT351746 ncbi Pseudomonas putida F16
PPUT160488 ncbi Pseudomonas putida KT24406
PPRO298386 ncbi Photobacterium profundum SS96
PNAP365044 ncbi Polaromonas naphthalenivorans CJ26
PMUL272843 ncbi Pasteurella multocida multocida Pm706
PMEN399739 ncbi Pseudomonas mendocina ymp6
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO16
PING357804 ncbi Psychromonas ingrahamii 376
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1256
PFLU220664 ncbi Pseudomonas fluorescens Pf-56
PFLU216595 ncbi Pseudomonas fluorescens SBW256
PFLU205922 ncbi Pseudomonas fluorescens Pf0-16
PENT384676 ncbi Pseudomonas entomophila L486
PCAR338963 ncbi Pelobacter carbinolicus DSM 23805
PATL342610 ncbi Pseudoalteromonas atlantica T6c6
PAER208964 ncbi Pseudomonas aeruginosa PAO16
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA146
OANT439375 ncbi Ochrobactrum anthropi ATCC 491885
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2555
NOCE323261 ncbi Nitrosococcus oceani ATCC 197076
NMUL323848 ncbi Nitrosospira multiformis ATCC 251966
NHAM323097 ncbi Nitrobacter hamburgensis X145
NEUT335283 ncbi Nitrosomonas eutropha C916
NEUR228410 ncbi Nitrosomonas europaea ATCC 197186
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124445
MTHE264732 ncbi Moorella thermoacetica ATCC 390735
MSP409 Methylobacterium sp.5
MSP400668 ncbi Marinomonas sp. MWYL16
MSP266779 ncbi Chelativorans sp. BNC16
MPET420662 ncbi Methylibium petroleiphilum PM16
MMAR394221 ncbi Maricaulis maris MCS105
MFLA265072 ncbi Methylobacillus flagellatus KT6
MEXT419610 ncbi Methylobacterium extorquens PA15
MAQU351348 ncbi Marinobacter aquaeolei VT86
LPNE400673 ncbi Legionella pneumophila Corby6
LPNE297246 ncbi Legionella pneumophila Paris6
LPNE297245 ncbi Legionella pneumophila Lens6
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 16
LCHO395495 ncbi Leptothrix cholodnii SP-66
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785786
JSP375286 ncbi Janthinobacterium sp. Marseille6
JSP290400 ncbi Jannaschia sp. CCS15
ILOI283942 ncbi Idiomarina loihiensis L2TR6
HSOM228400 ncbi Haemophilus somnus 23366
HSOM205914 ncbi Haemophilus somnus 129PT6
HINF71421 ncbi Haemophilus influenzae Rd KW206
HINF374930 ncbi Haemophilus influenzae PittEE6
HINF281310 ncbi Haemophilus influenzae 86-028NP6
HHAL349124 ncbi Halorhodospira halophila SL16
HDUC233412 ncbi Haemophilus ducreyi 35000HP6
HCHE349521 ncbi Hahella chejuensis KCTC 23966
HARS204773 ncbi Herminiimonas arsenicoxydans6
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-25
GSUL243231 ncbi Geobacter sulfurreducens PCA5
GOXY290633 ncbi Gluconobacter oxydans 621H5
GKAU235909 ncbi Geobacillus kaustophilus HTA4265
GBET391165 ncbi Granulibacter bethesdensis CGDNIH16
ESP42895 Enterobacter sp.6
ELIT314225 ncbi Erythrobacter litoralis HTCC25945
EFER585054 ncbi Escherichia fergusonii ATCC 354696
ECOO157 ncbi Escherichia coli O157:H7 EDL9336
ECOL83334 Escherichia coli O157:H76
ECOL585397 ncbi Escherichia coli ED1a6
ECOL585057 ncbi Escherichia coli IAI396
ECOL585056 ncbi Escherichia coli UMN0266
ECOL585055 ncbi Escherichia coli 559896
ECOL585035 ncbi Escherichia coli S886
ECOL585034 ncbi Escherichia coli IAI16
ECOL481805 ncbi Escherichia coli ATCC 87396
ECOL469008 ncbi Escherichia coli BL21(DE3)6
ECOL439855 ncbi Escherichia coli SMS-3-56
ECOL413997 ncbi Escherichia coli B str. REL6066
ECOL409438 ncbi Escherichia coli SE116
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI896
ECOL362663 ncbi Escherichia coli 5366
ECOL331111 ncbi Escherichia coli E24377A6
ECOL316407 ncbi Escherichia coli K-12 substr. W31106
ECOL199310 ncbi Escherichia coli CFT0736
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10436
DSP255470 ncbi Dehalococcoides sp. CBDB15
DSP216389 ncbi Dehalococcoides sp. BAV15
DSHI398580 ncbi Dinoroseobacter shibae DFL 126
DRED349161 ncbi Desulfotomaculum reducens MI-15
DPSY177439 ncbi Desulfotalea psychrophila LSv545
DETH243164 ncbi Dehalococcoides ethenogenes 1955
DARO159087 ncbi Dechloromonas aromatica RCB6
CVIO243365 ncbi Chromobacterium violaceum ATCC 124726
CTEP194439 ncbi Chlorobium tepidum TLS6
CSP78 Caulobacter sp.6
CSP501479 Citreicella sp. SE456
CSAL290398 ncbi Chromohalobacter salexigens DSM 30436
CPSY167879 ncbi Colwellia psychrerythraea 34H5
CJAP155077 Cellvibrio japonicus6
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C5
CCHL340177 ncbi Chlorobium chlorochromatii CaD36
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1116
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80525
BWEI315730 ncbi Bacillus weihenstephanensis KBAB46
BVIE269482 ncbi Burkholderia vietnamiensis G46
BTRI382640 ncbi Bartonella tribocorum CIP 1054765
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-276
BTHA271848 ncbi Burkholderia thailandensis E2646
BSUI470137 ncbi Brucella suis ATCC 234455
BSUI204722 ncbi Brucella suis 13305
BSUB ncbi Bacillus subtilis subtilis 1686
BSP376 Bradyrhizobium sp.6
BSP36773 Burkholderia sp.6
BQUI283165 ncbi Bartonella quintana Toulouse6
BPUM315750 ncbi Bacillus pumilus SAFR-0325
BPSE320373 ncbi Burkholderia pseudomallei 6686
BPSE320372 ncbi Burkholderia pseudomallei 1710b6
BPSE272560 ncbi Burkholderia pseudomallei K962436
BPET94624 Bordetella petrii6
BOVI236 Brucella ovis5
BMEL359391 ncbi Brucella melitensis biovar Abortus 23085
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M5
BMAL320389 ncbi Burkholderia mallei NCTC 102476
BMAL320388 ncbi Burkholderia mallei SAVP16
BMAL243160 ncbi Burkholderia mallei ATCC 233446
BLIC279010 ncbi Bacillus licheniformis ATCC 145805
BHEN283166 ncbi Bartonella henselae Houston-16
BHAL272558 ncbi Bacillus halodurans C-1255
BCLA66692 ncbi Bacillus clausii KSM-K165
BCER572264 ncbi Bacillus cereus 03BB1026
BCER405917 Bacillus cereus W6
BCER288681 ncbi Bacillus cereus E33L6
BCEN331272 ncbi Burkholderia cenocepacia HI24246
BCEN331271 ncbi Burkholderia cenocepacia AU 10546
BCAN483179 ncbi Brucella canis ATCC 233655
BBAC360095 ncbi Bartonella bacilliformis KC5836
BANT592021 ncbi Bacillus anthracis A02486
BANT568206 ncbi Bacillus anthracis CDC 6846
BANT261594 ncbi Bacillus anthracis Ames Ancestor6
BANT260799 ncbi Bacillus anthracis Sterne6
BAMY326423 ncbi Bacillus amyloliquefaciens FZB426
BAMB398577 ncbi Burkholderia ambifaria MC40-66
BAMB339670 ncbi Burkholderia ambifaria AMMD6
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9415
ASP76114 ncbi Aromatoleum aromaticum EbN16
ASP62928 ncbi Azoarcus sp. BH726
ASP232721 ncbi Acidovorax sp. JS426
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4496
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL036
APLE416269 ncbi Actinobacillus pleuropneumoniae L206
AORE350688 ncbi Alkaliphilus oremlandii OhILAs5
AHYD196024 Aeromonas hydrophila dhakensis6
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232706
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-16
ACRY349163 ncbi Acidiphilium cryptum JF-56
ACAU438753 ncbi Azorhizobium caulinodans ORS 5715
ABOR393595 ncbi Alcanivorax borkumensis SK26
ABAU360910 ncbi Bordetella avium 197N6
AAVE397945 ncbi Acidovorax citrulli AAC00-16


Names of the homologs of the genes in the group in each of these orgs
  G7379   G7082   G6122   EG11312   EG10886   EG10004   
YPSE349747 YPSIP31758_0750YPSIP31758_0750YPSIP31758_0750YPSIP31758_0061YPSIP31758_0062YPSIP31758_0060
YPSE273123 YPTB3868YPTB3868YPTB3868YPTB0046YPTB0047YPTB0045
YPES386656 YPDSF_3856YPDSF_3856YPDSF_3856YPDSF_3856YPDSF_3855YPDSF_3857
YPES377628 YPN_3801YPN_3801YPN_3801YPN_3801YPN_3800YPN_3802
YPES360102 YPA_3493YPA_3493YPA_3493YPA_3493YPA_3492YPA_3494
YPES349746 YPANGOLA_A0055YPANGOLA_A0055YPANGOLA_A0055YPANGOLA_A0055YPANGOLA_A0056YPANGOLA_A0054
YPES214092 YPO0049YPO0049YPO0049YPO0049YPO0050YPO0048
YPES187410 Y0092Y0092Y0092Y0092Y0093
YENT393305 YE0063YE0063YE0063YE0063YE0064YE0062
XORY360094 XOOORF_4883XOOORF_4883XOOORF_4883XOOORF_4883XOOORF_5179XOOORF_4882
XORY342109 XOO0462XOO0462XOO0462XOO0462XOO4295XOO0463
XORY291331 XOO0495XOO0495XOO0495XOO0495XOO0496
XFAS405440 XFASM12_0125XFASM12_0125XFASM12_0125XFASM12_0125XFASM12_0546XFASM12_0126
XFAS183190 PD_0117PD_0117PD_0117PD_0117PD_0488PD_0118
XFAS160492 XF0148XF0148XF0148XF0148XF1206XF0149
XCAM487884 XCC-B100_2455XCC-B100_1056XCC-B100_2455XCC-B100_4044XCC-B100_4230XCC-B100_4043
XCAM316273 XCAORF_0429XCAORF_0429XCAORF_0429XCAORF_0429XCAORF_0226XCAORF_0430
XCAM314565 XC_2029XC_3944XC_2029XC_3944XC_4123XC_3943
XCAM190485 XCC1619XCC3860XCC3860XCC3860XCC4034XCC3859
XAXO190486 XAC2179XAC2179XAC2281XAC3915XAC4159XAC3914
VVUL216895 VV1_0825VV1_0825VV1_0825VV1_0825VV1_0824VV1_0828
VVUL196600 VV2251VV0285VV2251VV0285VV0286VV0283
VPAR223926 VP0184VP0184VP0184VP0184VP0185VP0181
VFIS312309 VFA0522VFA0522VFA0522VF0126VF0127VF0125
VEIS391735 VEIS_1654VEIS_1654VEIS_1654VEIS_1654VEIS_1757VEIS_2654
VCHO345073 VC0395_A1383VC0395_A2597VC0395_A2597VC0395_A2597VC0395_A2599VC0395_A2595
VCHO VC1786VC0217VC1786VC0217VC0218VC0215
TTUR377629 TERTU_0184TERTU_0184TERTU_0184TERTU_0184TERTU_0181TERTU_0185
TTEN273068 TTE0897TTE0897TTE0897TTE0897TTE1509
TSP1755 TETH514_2135TETH514_2135TETH514_2135TETH514_2135TETH514_1759
TPSE340099 TETH39_1453TETH39_1453TETH39_1453TETH39_1453TETH39_1322
TDEN292415 TBD_2588TBD_2588TBD_2588TBD_2588TBD_2589TBD_2587
TCRU317025 TCR_1917TCR_1917TCR_1917TCR_1917TCR_1918TCR_1915
SWOL335541 SWOL_2262SWOL_1642SWOL_1642SWOL_1642SWOL_1235
STYP99287 STM3729STM3729STM3729STM3729STM3728STM3730
STHE292459 STH371STH371STH371STH371STH1341
SSP94122 SHEWANA3_1252SHEWANA3_1252SHEWANA3_1252SHEWANA3_3770SHEWANA3_3769SHEWANA3_3771
SSP644076 SCH4B_3369SCH4B_3369SCH4B_3369SCH4B_3369SCH4B_3990SCH4B_1303
SSP292414 TM1040_0008TM1040_0008TM1040_0008TM1040_0008TM1040_0671TM1040_0458
SSED425104 SSED_0385SSED_0385SSED_0385SSED_0385SSED_0386SSED_0384
SSAP342451 SSP1105SSP1105SSP1105SSP1548SSP1560
SPRO399741 SPRO_1772SPRO_1772SPRO_1772SPRO_4842SPRO_4841SPRO_4843
SPEA398579 SPEA_1259SPEA_1259SPEA_1259SPEA_3837SPEA_3836SPEA_3838
SONE211586 SO_1455SO_1455SO_1455SO_4248SO_4247SO_4249
SMEL266834 SMC00299SMC00299SMC00299SMC00704SMC01161
SLOI323850 SHEW_1257SHEW_1257SHEW_1257SHEW_3481SHEW_3480SHEW_3482
SLAC55218 SL1157_1141SL1157_1141SL1157_1141SL1157_1141SL1157_0112SL1157_0579
SHIGELLA YEESYEESYEESRADCRPMBDFP
SHAL458817 SHAL_0429SHAL_0429SHAL_0429SHAL_0429SHAL_0430SHAL_0428
SHAE279808 SH1266SH1266SH1266SH1266SH1691SH1703
SFLE373384 SFV_3892SFV_3892SFV_3892SFV_3892SFV_3891
SFLE198214 AAN44477.1AAN44477.1AAN44477.1AAN45124.1AAN45123.1AAN45125.1
SENT454169 SEHA_C4680SEHA_C4680SEHA_C4680SEHA_C4055SEHA_C4054SEHA_C4056
SENT321314 SCH_3652SCH_3652SCH_3652SCH_3652SCH_3651SCH_3653
SENT295319 SPA3581SPA3581SPA3581SPA3581SPA3580SPA3582
SENT220341 STY4065STY4065STY4065STY4065STY4066STY4064
SENT209261 T3789T3789T3789T3789T3790T3788
SDYS300267 SDY_4590SDY_4590SDY_4590SDY_4068SDY_4067SDY_4069
SDEN318161 SDEN_0326SDEN_0326SDEN_0326SDEN_0326SDEN_0327SDEN_0325
SDEG203122 SDE_3678SDE_3678SDE_3678SDE_3678SDE_3679SDE_3677
SBOY300268 SBO_3640SBO_3640SBO_3640SBO_3640SBO_3639SBO_3641
SBAL402882 SHEW185_0376SHEW185_0376SHEW185_0376SHEW185_0376SHEW185_0377SHEW185_0375
SBAL399599 SBAL195_0388SBAL195_0388SBAL195_0388SBAL195_0388SBAL195_0389SBAL195_0387
SAUR273036 SAB1521CSAB1521CSAB1521CSAB1088CSAB1075
SALA317655 SALA_1070SALA_1070SALA_1070SALA_2750SALA_3182
SACI56780 SYN_03201SYN_03201SYN_03201SYN_03201SYN_02177
RSPH349102 RSPH17025_2764RSPH17025_2764RSPH17025_2764RSPH17025_3114RSPH17025_0484
RSPH349101 RSPH17029_3721RSPH17029_3721RSPH17029_3721RSPH17029_0726RSPH17029_2252
RSPH272943 RSP_1171RSP_1171RSP_1171RSP_1171RSP_2016RSP_0599
RSOL267608 RSC2620RSC2620RSC2620RSC2444RSC2445RSC2461
RPOM246200 SPO_0054SPO_0054SPO_0054SPO_0054SPO_0974SPO_0408
RPAL316058 RPB_0700RPB_0700RPB_0700RPB_0546RPB_0622
RPAL316057 RPD_0152RPD_0152RPD_0152RPD_0283RPD_0209
RPAL316056 RPC_0575RPC_0575RPC_0575RPC_0543RPC_0380
RPAL316055 RPE_0103RPE_0103RPE_0103RPE_0129RPE_0467
RPAL258594 RPA0385RPA0385RPA0385RPA0493RPA0081
RMET266264 RMET_2355RMET_2355RMET_2355RMET_2870RMET_2887
RLEG216596 RL2068RL2068RL2068RL2068RL0357
RFER338969 RFER_3252RFER_3252RFER_3252RFER_3252RFER_3180RFER_2647
REUT381666 H16_A3033H16_A3033H16_A3033H16_A3033H16_A3034H16_A3048
REUT264198 REUT_A2732REUT_A2732REUT_A2732REUT_A2732REUT_A2733REUT_A2747
RETL347834 RHE_CH01848RHE_CH01848RHE_CH01848RHE_CH01848RHE_CH03816RHE_CH00342
RDEN375451 RD1_3690RD1_3690RD1_3690RD1_3690RD1_1680RD1_1200
PSYR223283 PSPTO_0086PSPTO_0086PSPTO_0086PSPTO_0086PSPTO_0089PSPTO_0085
PSYR205918 PSYR_0222PSYR_0222PSYR_0222PSYR_0222PSYR_0224PSYR_0221
PSTU379731 PST_0473PST_0473PST_0473PST_0473PST_0107PST_0472
PSP312153 PNUC_1733PNUC_1733PNUC_1733PNUC_1733PNUC_1734PNUC_1742
PSP296591 BPRO_0948BPRO_0948BPRO_0948BPRO_0948BPRO_3802BPRO_3180
PPUT76869 PPUTGB1_5335PPUTGB1_5335PPUTGB1_5335PPUTGB1_5335PPUTGB1_5333PPUTGB1_5336
PPUT351746 PPUT_2927PPUT_2927PPUT_5194PPUT_5194PPUT_5192PPUT_5195
PPUT160488 PP_5284PP_5284PP_5284PP_5284PP_5282PP_5285
PPRO298386 PBPRA0202PBPRA0202PBPRA0202PBPRA0202PBPRA0203PBPRA0201
PNAP365044 PNAP_4157PNAP_4157PNAP_4157PNAP_3339PNAP_3214PNAP_1186
PMUL272843 PM1152PM1152PM1152PM1152PM1151PM1153
PMEN399739 PMEN_4376PMEN_4376PMEN_1181PMEN_4376PMEN_4374PMEN_4377
PLUM243265 PLU0133PLU0133PLU0133PLU4865PLU4864PLU4866
PING357804 PING_0056PING_0056PING_0056PING_0056PING_0055PING_0057
PHAL326442 PSHAA2643PSHAA2643PSHAA2643PSHAA2643PSHAA2642PSHAA2644
PFLU220664 PFL_6051PFL_6051PFL_6051PFL_6051PFL_6049PFL_6052
PFLU216595 PFLU1968PFLU1968PFLU1968PFLU5982PFLU5980PFLU5983
PFLU205922 PFL_3005PFL_3005PFL_3005PFL_5539PFL_5537PFL_5540
PENT384676 PSEEN5431PSEEN5431PSEEN5431PSEEN5431PSEEN5427PSEEN5432
PCAR338963 PCAR_0803PCAR_0803PCAR_0803PCAR_0065PCAR_2011
PATL342610 PATL_0046PATL_0046PATL_0046PATL_0046PATL_0048PATL_0045
PAER208964 PA5319PA5319PA5319PA5319PA5316PA5320
PAER208963 PA14_31260PA14_31260PA14_31260PA14_70230PA14_70190PA14_70240
OANT439375 OANT_1909OANT_1909OANT_1909OANT_0918OANT_1319
NWIN323098 NWI_0335NWI_0335NWI_0335NWI_0406NWI_0043
NOCE323261 NOC_0236NOC_0236NOC_0236NOC_0236NOC_2640NOC_2992
NMUL323848 NMUL_A2138NMUL_A2138NMUL_A2138NMUL_A2138NMUL_A2139NMUL_A2137
NHAM323097 NHAM_0430NHAM_0430NHAM_0430NHAM_0502NHAM_0051
NEUT335283 NEUT_0079NEUT_0079NEUT_0079NEUT_0782NEUT_0781NEUT_0783
NEUR228410 NE1464NE1464NE1464NE1464NE1465NE1463
NARO279238 SARO_1311SARO_1311SARO_1311SARO_0222SARO_0591
MTHE264732 MOTH_0536MOTH_0536MOTH_0536MOTH_0536MOTH_0893
MSP409 M446_6762M446_6762M446_6762M446_3667M446_6249
MSP400668 MMWYL1_0624MMWYL1_0624MMWYL1_0624MMWYL1_0624MMWYL1_0629MMWYL1_0623
MSP266779 MESO_1454MESO_1454MESO_1454MESO_1454MESO_3074MESO_4055
MPET420662 MPE_A1658MPE_A2396MPE_A2396MPE_A2695MPE_A1117MPE_A2571
MMAR394221 MMAR10_1043MMAR10_1043MMAR10_1043MMAR10_1043MMAR10_2290
MFLA265072 MFLA_0315MFLA_0315MFLA_0315MFLA_0315MFLA_0312MFLA_0314
MEXT419610 MEXT_2207MEXT_2207MEXT_2207MEXT_2978MEXT_3927
MAQU351348 MAQU_3564MAQU_3564MAQU_3564MAQU_3564MAQU_3565MAQU_3563
LPNE400673 LPC_1989LPC_1989LPC_1989LPC_1989LPC_2865LPC_1990
LPNE297246 LPP2553LPP2553LPP2553LPP2553LPP0544LPP2552
LPNE297245 LPL2409LPL2409LPL2409LPL2409LPL0520LPL2408
LPNE272624 LPG2489LPG2489LPG2489LPG2489LPG0479LPG2488
LCHO395495 LCHO_0695LCHO_0695LCHO_0695LCHO_0695LCHO_0753LCHO_2645
KPNE272620 GKPORF_B4080GKPORF_B4080GKPORF_B4080GKPORF_B3341GKPORF_B3340GKPORF_B3342
JSP375286 MMA_2551MMA_2551MMA_0987MMA_2551MMA_2552MMA_0826
JSP290400 JANN_0720JANN_0720JANN_0286JANN_3424JANN_0907
ILOI283942 IL0240IL0636IL0240IL0240IL0241IL0239
HSOM228400 HSM_0009HSM_0009HSM_0009HSM_0009HSM_0010HSM_0008
HSOM205914 HS_0144HS_0144HS_0144HS_0144HS_0145HS_0143
HINF71421 HI_0952HI_0952HI_0952HI_0952HI_0951HI_0953
HINF374930 CGSHIEE_07200CGSHIEE_07200CGSHIEE_07200CGSHIEE_07200CGSHIEE_07205CGSHIEE_07195
HINF281310 NTHI1125NTHI1125NTHI1125NTHI1125NTHI1124NTHI1126
HHAL349124 HHAL_2301HHAL_2301HHAL_2301HHAL_2301HHAL_2314HHAL_2299
HDUC233412 HD_0945HD_0945HD_0945HD_0732HD_0731HD_0733
HCHE349521 HCH_00620HCH_00620HCH_00620HCH_01020HCH_01019HCH_01021
HARS204773 HEAR2468HEAR2022HEAR0689HEAR2468HEAR2469HEAR0843
GTHE420246 GTNG_2548GTNG_2548GTNG_2548GTNG_2548GTNG_1022
GSUL243231 GSU_2168GSU_2168GSU_2168GSU_0386GSU_1124
GOXY290633 GOX2392GOX2392GOX2392GOX0106GOX2498
GKAU235909 GK2618GK2618GK2618GK2618GK1169
GBET391165 GBCGDNIH1_1654GBCGDNIH1_1654GBCGDNIH1_1654GBCGDNIH1_1654GBCGDNIH1_0614GBCGDNIH1_0157
ESP42895 ENT638_0474ENT638_0474ENT638_0474ENT638_0101ENT638_0102ENT638_0100
ELIT314225 ELI_07560ELI_07560ELI_07560ELI_07560ELI_12690
EFER585054 EFER_3929EFER_3929EFER_3929EFER_3929EFER_3928EFER_3930
ECOO157 Z1217Z1217Z1217RADCRPMBDFP
ECOL83334 ECS2803ECS2803ECS2803ECS4513ECS4512ECS4514
ECOL585397 ECED1_4990ECED1_2353ECED1_5184ECED1_4322ECED1_4320ECED1_4323
ECOL585057 ECIAI39_4241ECIAI39_4573ECIAI39_1016ECIAI39_4156ECIAI39_4155ECIAI39_4157
ECOL585056 ECUMN_4885ECUMN_3407ECUMN_4885ECUMN_4153ECUMN_4151ECUMN_4154
ECOL585055 EC55989_4892EC55989_2260EC55989_3363EC55989_4103EC55989_4101EC55989_4104
ECOL585035 ECS88_2099ECS88_2099ECS88_2099ECS88_4052ECS88_4051ECS88_4053
ECOL585034 ECIAI1_3809ECIAI1_3809ECIAI1_3809ECIAI1_3809ECIAI1_3807ECIAI1_3810
ECOL481805 ECOLC_3443ECOLC_3443ECOLC_3443ECOLC_0073ECOLC_0074ECOLC_0072
ECOL469008 ECBD_0088ECBD_0088ECBD_0088ECBD_0088ECBD_0089ECBD_0087
ECOL439855 ECSMS35_0308ECSMS35_2246ECSMS35_3209ECSMS35_3973ECSMS35_3972ECSMS35_3974
ECOL413997 ECB_02805ECB_02805ECB_02805ECB_03495ECB_03494ECB_03496
ECOL409438 ECSE_0297ECSE_0297ECSE_0297ECSE_3918ECSE_3917ECSE_3919
ECOL405955 APECO1_2316APECO1_2316APECO1_2316APECO1_2823APECO1_2822
ECOL364106 UTI89_C1145UTI89_C1145UTI89_C1145UTI89_C4182UTI89_C4181UTI89_C4183
ECOL362663 ECP_0335ECP_3856ECP_0335ECP_3736ECP_3735ECP_3737
ECOL331111 ECE24377A_4896ECE24377A_4896ECE24377A_3410ECE24377A_4139ECE24377A_4138ECE24377A_4140
ECOL316407 ECK2640:JW2625:B2644ECK1995:JW1984:B2002ECK0249:JW0236:B0247ECK3628:JW5643:B3638ECK3627:JW3612:B3637ECK3629:JW5642:B3639
ECOL199310 C0273C3671C5152C4462C4461C4463
ECAR218491 ECA2855ECA2855ECA2855ECA0145ECA0146ECA0144
DSP255470 CBDBA1432CBDBA1432CBDBA1432CBDBA1432CBDBA383
DSP216389 DEHABAV1_1263DEHABAV1_1263DEHABAV1_1263DEHABAV1_1263DEHABAV1_0406
DSHI398580 DSHI_3569DSHI_3569DSHI_3569DSHI_3569DSHI_2583DSHI_2976
DRED349161 DRED_2549DRED_2549DRED_2549DRED_2549DRED_1702
DPSY177439 DP0715DP0715DP0715DP1683DP1673
DETH243164 DET_1462DET_1462DET_1462DET_1462DET_0429
DARO159087 DARO_2231DARO_2555DARO_2555DARO_3142DARO_3143DARO_3141
CVIO243365 CV_3079CV_3079CV_3079CV_3079CV_3456CV_3080
CTEP194439 CT_0611CT_0611CT_0611CT_0611CT_1611CT_0207
CSP78 CAUL_5205CAUL_5346CAUL_5205CAUL_5205CAUL_4128CAUL_5070
CSP501479 CSE45_3579CSE45_3579CSE45_3579CSE45_3579CSE45_0605CSE45_4341
CSAL290398 CSAL_2972CSAL_2972CSAL_2972CSAL_2972CSAL_2971CSAL_2981
CPSY167879 CPS_2951CPS_2951CPS_2951CPS_0209CPS_0182
CJAP155077 CJA_3522CJA_3522CJA_3522CJA_3522CJA_3515CJA_3523
CDES477974 DAUD_1467DAUD_1467DAUD_1467DAUD_1467DAUD_1595
CCHL340177 CAG_1513CAG_1513CAG_1513CAG_1513CAG_1743CAG_1614
CBUR434922 COXBU7E912_1789COXBU7E912_1789COXBU7E912_1789COXBU7E912_1789COXBU7E912_1790COXBU7E912_0950
CBEI290402 CBEI_0490CBEI_0490CBEI_0490CBEI_0490CBEI_1143
BWEI315730 BCERKBAB4_4299BCERKBAB4_4299BCERKBAB4_4299BCERKBAB4_4299BCERKBAB4_3681BCERKBAB4_3692
BVIE269482 BCEP1808_2579BCEP1808_2579BCEP1808_2579BCEP1808_2579BCEP1808_2580BCEP1808_2592
BTRI382640 BT_1153BT_1153BT_1153BT_2558BT_0038
BTHU281309 BT9727_4187BT9727_4187BT9727_4187BT9727_4187BT9727_3599BT9727_3610
BTHA271848 BTH_I0781BTH_I0781BTH_I0781BTH_I0781BTH_I0780BTH_I0768
BSUI470137 BSUIS_A1333BSUIS_A1333BSUIS_A1333BSUIS_A1856BSUIS_B1059
BSUI204722 BR_1283BR_1283BR_1283BR_2015BR_A1064
BSUB BSU28040BSU28040BSU28040BSU28040BSU15820BSU15700
BSP376 BRADO0713BRADO0713BRADO0713BRADO0713BRADO0635BRADO0077
BSP36773 BCEP18194_A5833BCEP18194_A5833BCEP18194_A5833BCEP18194_A5833BCEP18194_A5834BCEP18194_A5846
BQUI283165 BQ06240BQ06240BQ06240BQ06240BQ12830BQ00340
BPUM315750 BPUM_2444BPUM_2444BPUM_2444BPUM_2444BPUM_1469
BPSE320373 BURPS668_0979BURPS668_0979BURPS668_0979BURPS668_0979BURPS668_0978BURPS668_0965
BPSE320372 BURPS1710B_A1193BURPS1710B_A1193BURPS1710B_A1193BURPS1710B_A1193BURPS1710B_A1192BURPS1710B_A1179
BPSE272560 BPSL0917BPSL0917BPSL0917BPSL0917BPSL0916BPSL0904
BPET94624 BPET1083BPET1083BPET1083BPET3149BPET3313BPET2816
BOVI236 GBOORF1293GBOORF1293GBOORF1293GBOORF2011GBOORFA1095
BMEL359391 BAB1_1301BAB1_1301BAB1_1301BAB1_2016BAB2_1024
BMEL224914 BMEI0718BMEI0718BMEI0718BMEI0056BMEII0235
BMAL320389 BMA10247_2099BMA10247_2099BMA10247_2099BMA10247_2099BMA10247_2100BMA10247_2114
BMAL320388 BMASAVP1_A2646BMASAVP1_A2646BMASAVP1_A2646BMASAVP1_A2646BMASAVP1_A2647BMASAVP1_A2660
BMAL243160 BMA_2230BMA_2230BMA_2230BMA_2230BMA_2231BMA_2244
BLIC279010 BL00636BL00636BL00636BL00636BL02295
BHEN283166 BH08340BH08340BH08340BH08340BH15920BH00380
BHAL272558 BH3032BH3032BH3032BH3032BH2510
BCLA66692 ABC2615ABC2615ABC2615ABC2615ABC2320
BCER572264 BCA_4566BCA_4566BCA_4566BCA_4566BCA_3958BCA_3969
BCER405917 BCE_4545BCE_4545BCE_4545BCE_4545BCE_3900BCE_3912
BCER288681 BCE33L4198BCE33L4198BCE33L4198BCE33L4198BCE33L3617BCE33L3628
BCEN331272 BCEN2424_2501BCEN2424_2501BCEN2424_2501BCEN2424_2501BCEN2424_2502BCEN2424_2514
BCEN331271 BCEN_1890BCEN_1890BCEN_1890BCEN_1890BCEN_1891BCEN_1903
BCAN483179 BCAN_A1306BCAN_A1306BCAN_A1306BCAN_A2061BCAN_B1086
BBAC360095 BARBAKC583_0830BARBAKC583_0830BARBAKC583_0830BARBAKC583_0830BARBAKC583_0077BARBAKC583_1349
BANT592021 BAA_4704BAA_4704BAA_4704BAA_4704BAA_4020BAA_4031
BANT568206 BAMEG_4721BAMEG_4721BAMEG_4721BAMEG_4721BAMEG_0635BAMEG_0624
BANT261594 GBAA4685GBAA4685GBAA4685GBAA4685GBAA3996GBAA4007
BANT260799 BAS4351BAS4351BAS4351BAS4351BAS3709BAS3720
BAMY326423 RBAM_025090RBAM_025090RBAM_025090RBAM_025090RBAM_015650RBAM_015530
BAMB398577 BAMMC406_2419BAMMC406_2419BAMMC406_2419BAMMC406_2419BAMMC406_2420BAMMC406_2432
BAMB339670 BAMB_2548BAMB_2548BAMB_2548BAMB_2548BAMB_2549BAMB_2561
BABO262698 BRUAB1_1284BRUAB1_1284BRUAB1_1284BRUAB1_1990BRUAB2_1004
ASP76114 EBA2514EBA2514EBA2514EBA840EBA4482EBA838
ASP62928 AZO1137AZO1137AZO1137AZO1137AZO1136AZO1138
ASP232721 AJS_2636AJS_2636AJS_2184AJS_3450AJS_3384AJS_1001
ASAL382245 ASA_4229ASA_4229ASA_P5G141ASA_4229ASA_4228ASA_4230
APLE434271 APJL_2017APJL_2017APJL_2017APJL_2017APJL_2018APJL_2016
APLE416269 APL_1970APL_1970APL_1970APL_1970APL_1971APL_1969
AORE350688 CLOS_1766CLOS_1766CLOS_1766CLOS_1766CLOS_1425
AHYD196024 AHA_0160AHA_0160AHA_1079AHA_0160AHA_0161AHA_0159
AFER243159 AFE_2674AFE_2674AFE_2674AFE_2674AFE_0435AFE_2675
AEHR187272 MLG_2664MLG_2664MLG_2664MLG_2664MLG_2641MLG_2847
ACRY349163 ACRY_2621ACRY_2621ACRY_2621ACRY_2621ACRY_2702ACRY_1725
ACAU438753 AZC_4204AZC_4204AZC_4204AZC_0547AZC_3913
ABOR393595 ABO_0214ABO_0214ABO_0214ABO_0214ABO_0215ABO_0213
ABAU360910 BAV2405BAV2405BAV2405BAV2405BAV2485BAV1409
AAVE397945 AAVE_0492AAVE_0492AAVE_0492AAVE_3773AAVE_3428AAVE_1328


Organism features enriched in list (features available for 227 out of the 243 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00192382492
Disease:Brucellosis 0.008709555
Disease:Bubonic_plague 0.003345266
Disease:Gastroenteritis 0.00483971013
Endospores:No 9.440e-1343211
GC_Content_Range4:0-40 1.594e-2131213
GC_Content_Range4:40-60 4.096e-8118224
GC_Content_Range4:60-100 0.000011978145
GC_Content_Range7:0-30 8.238e-10147
GC_Content_Range7:30-40 1.079e-1130166
GC_Content_Range7:50-60 8.107e-866107
GC_Content_Range7:60-70 1.356e-778134
Genome_Size_Range5:0-2 6.964e-2610155
Genome_Size_Range5:2-4 0.007847165197
Genome_Size_Range5:4-6 3.297e-23126184
Genome_Size_Range5:6-10 0.00740052647
Genome_Size_Range9:1-2 8.063e-1910128
Genome_Size_Range9:2-3 0.000308731120
Genome_Size_Range9:4-5 5.995e-86196
Genome_Size_Range9:5-6 4.520e-136588
Genome_Size_Range9:6-8 0.00035552538
Gram_Stain:Gram_Neg 5.377e-21183333
Gram_Stain:Gram_Pos 6.510e-1028150
Habitat:Host-associated 0.004476867206
Habitat:Multiple 0.007288381178
Habitat:Specialized 0.00172591153
Motility:No 2.031e-1520151
Motility:Yes 1.251e-16152267
Optimal_temp.:- 0.0003660119257
Optimal_temp.:25-30 0.00004781619
Optimal_temp.:30-37 0.0079903218
Optimal_temp.:37 0.000547927106
Oxygen_Req:Anaerobic 2.745e-718102
Oxygen_Req:Facultative 6.135e-8108201
Pathogenic_in:Animal 0.00932983466
Pathogenic_in:Plant 0.00545551115
Shape:Coccus 2.618e-10882
Shape:Rod 9.832e-23190347
Shape:Sphere 0.0053740219
Shape:Spiral 0.0000554334
Temp._range:Hyperthermophilic 0.0001389123
Temp._range:Thermophilic 0.0028472635



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 186
Effective number of orgs (counting one per cluster within 468 clusters): 160

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM41
WSUC273121 ncbi Wolinella succinogenes DSM 17401
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX1
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSP84588 ncbi Synechococcus sp. WH 81021
SSP64471 ncbi Synechococcus sp. CC93111
SSP1131 Synechococcus sp. CC96051
SSOL273057 ncbi Sulfolobus solfataricus P20
SPNE488221 ncbi Streptococcus pneumoniae 705851
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-61
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-141
SPNE171101 ncbi Streptococcus pneumoniae R61
SPNE170187 ncbi Streptococcus pneumoniae G541
SPNE1313 Streptococcus pneumoniae1
SMUT210007 ncbi Streptococcus mutans UA1591
SMAR399550 ncbi Staphylothermus marinus F10
SCO ncbi Streptomyces coelicolor A3(2)1
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington1
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E1
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RALB246199 Ruminococcus albus 81
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP117 Pirellula sp.0
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PMAR93060 ncbi Prochlorococcus marinus MIT 92151
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96011
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE50
OIHE221109 ncbi Oceanobacillus iheyensis HTE8311
NSP35761 Nocardioides sp.1
NSP103690 ncbi Nostoc sp. PCC 71201
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 531
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP1
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K1
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-11
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2321
MHYO262722 ncbi Mycoplasma hyopneumoniae 74481
MHYO262719 ncbi Mycoplasma hyopneumoniae J1
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MART243272 ncbi Mycoplasma arthritidis 158L3-11
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514491
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74211
GMET269799 ncbi Geobacter metallireducens GS-151
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI31
FALN326424 ncbi Frankia alni ACN14a1
DRAD243230 ncbi Deinococcus radiodurans R10
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS1
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFET360106 ncbi Campylobacter fetus fetus 82-401
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
CCAV227941 ncbi Chlamydophila caviae GPIC1
CBLO203907 ncbi Candidatus Blochmannia floridanus1
CABO218497 ncbi Chlamydophila abortus S26/31
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1351
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)1
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH1
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)1
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG11
AMAR329726 ncbi Acaryochloris marina MBIC110171
AMAR234826 ncbi Anaplasma marginale St. Maries1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C1
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
ABUT367737 ncbi Arcobacter butzleri RM40181
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3451
AAUR290340 ncbi Arthrobacter aurescens TC11


Names of the homologs of the genes in the group in each of these orgs
  G7379   G7082   G6122   EG11312   EG10886   EG10004   
ZMOB264203 ZMO1190
WSUC273121 WS0328
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496 TW0113
TWHI203267 TW113
TVOL273116
TTHE300852 TTHA1560
TTHE262724 TT_C1195
TPEN368408
TPAL243276
TKOD69014
TFUS269800 TFU_1064
TERY203124 TERY_2643
TDEN326298 TMDEN_1602
TDEN243275
TACI273075
STOK273063
STHE322159 STER_1430
STHE299768 STR1465
STHE264199 STU1465
SSUI391295 SSU05_1071
SSP84588 SYNW1279OR0231
SSP64471 GSYN1504
SSP1131 SYNCC9605_1405
SSOL273057
SPNE488221 SP70585_1163
SPNE487214 SPH_1181
SPNE487213 SPT_1135
SPNE171101 SPR0996
SPNE170187 SPN03203
SPNE1313 SPJ_1027
SMUT210007 SMU_1055
SMAR399550
SCO SCO3429
SACI330779
RTYP257363 RT0038
RRIC452659
RRIC392021
RPRO272947 RP099
RMAS416276
RFEL315456
RCON272944
RCAN293613
RALB246199 GRAORF_3948
RAKA293614
PTOR263820
PSP117
PPEN278197 PEPE_0827
PMAR93060 P9215_09901
PMAR74547 PMT0695
PMAR74546 PMT9312_0898
PMAR59920 PMN2A_0305
PMAR167555 NATL1_09781
PMAR167546 P9301ORF_0974
PMAR167542 P9515ORF_1032
PMAR167540 PMM0902
PMAR167539 PRO_0933
PMAR146891 A9601_09591
PISL384616
PHOR70601
PFUR186497
PAST100379
PARS340102
PAER178306
PACN267747 PPA2158
PABY272844
OIHE221109 OB1504
NSP35761 NOCA_2438
NSP103690 ALL3111
NSEN222891
NPHA348780
MTHE349307
MTHE187420
MSYN262723 MS53_0066
MSTA339860
MSED399549
MPUL272635 MYPU_6960
MPNE272634
MPEN272633
MMYC272632
MMOB267748 MMOB4150
MMAR444158
MMAR426368
MMAR402880
MMAR368407 MEMAR_0061
MMAR267377
MMAG342108 AMB0202
MLEP272631 ML0543
MLAB410358
MKAN190192
MJAN243232
MHYO295358 MHP259
MHYO262722 MHP7448_0122
MHYO262719 MHJ_0118
MHUN323259 MHUN_2739
MGEN243273
MFLO265311 MFL227
MCAP340047
MBAR269797 MBAR_A2303
MART243272 MART0004
MAEO419665
LREU557436 LREU_1174
LMES203120 LEUM_1217
LLAC272623 L0306
LJOH257314 LJ_0902
LINT363253
LINT267671 LIC_11760
LINT189518 LA2162
LHEL405566 LHV_1017
LGAS324831 LGAS_1278
LBRE387344 LVIS_0967
LBOR355277 LBJ_1857
LBOR355276 LBL_1427
LBIF456481 LEPBI_I1020
LBIF355278 LBF_0986
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HMUK485914
HMAR272569
HHEP235279 HH_1289
HBUT415426
HACI382638
GVIO251221 GLL3465
GMET269799 GMET_2673
FSP1855 FRANEAN1_1715
FSP106370 FRANCCI3_3193
FALN326424 FRAAL5228
DRAD243230
DGEO319795 DGEO_2315
CTRA471473 CTLON_0337
CTRA471472 CTL0341
CSUL444179 SMGWSS_050
CPNE182082 CPB0337
CPNE138677 CPJ0327
CPNE115713 CPN0327
CPNE115711 CP_0430
CMUR243161 TC_0361
CMET456442
CMAQ397948
CKOR374847
CJEJ407148 C8J_0423
CJEJ360109 JJD26997_1489
CJEJ354242 CJJ81176_0475
CJEJ195099 CJE_0500
CJEJ192222 CJ0450C
CHOM360107
CGLU196627 CG0991
CFET360106 CFF8240_0971
CFEL264202 CF0552
CCUR360105 CCV52592_0722
CCON360104 CCC13826_1345
CCAV227941 CCA_00455
CBLO203907 BFL612
CABO218497 CAB441
BXEN266265
BTUR314724 BT0812
BSP107806 BU086
BLON206672
BHER314723 BH0812
BGAR290434
BBUR224326
BBAC264462
BAPH372461 BCC_052
BAPH198804 BUSG079
BAFZ390236
AYEL322098
AURANTIMONAS
APER272557
ANAE240017 ANA_0189
AMAR329726 AM1_0110
AMAR234826 AM942
AFUL224325
ADEH290397 ADEH_2372
ACEL351607 ACEL_1291
ABUT367737 ABU_1793
ABAC204669 ACID345_3776
AAUR290340 AAUR_3756


Organism features enriched in list (features available for 173 out of the 186 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.000050117112
Arrangment:Tetrads 0.007565344
Disease:Leptospirosis 0.007565344
Disease:Pharyngitis 0.000053588
Disease:bronchitis_and_pneumonitis 0.000053588
Endospores:No 6.087e-891211
Endospores:Yes 0.0001866553
GC_Content_Range4:0-40 5.797e-1198213
GC_Content_Range4:40-60 0.003112753224
GC_Content_Range4:60-100 2.410e-622145
GC_Content_Range7:0-30 0.00002392747
GC_Content_Range7:30-40 7.943e-671166
GC_Content_Range7:50-60 0.001829920107
GC_Content_Range7:60-70 5.053e-718134
Genome_Size_Range5:0-2 5.955e-31104155
Genome_Size_Range5:4-6 1.997e-2011184
Genome_Size_Range5:6-10 0.0030741647
Genome_Size_Range9:0-1 3.327e-122527
Genome_Size_Range9:1-2 4.531e-1879128
Genome_Size_Range9:4-5 3.953e-8896
Genome_Size_Range9:5-6 2.448e-11388
Genome_Size_Range9:6-8 0.0007435338
Gram_Stain:Gram_Neg 5.791e-675333
Gram_Stain:Gram_Pos 0.002664932150
Habitat:Aquatic 0.00842233691
Habitat:Multiple 0.000136135178
Motility:Yes 0.009011668267
Optimal_temp.:25-30 0.0091947119
Optimal_temp.:85 0.007565344
Oxygen_Req:Facultative 0.000011138201
Oxygen_Req:Microaerophilic 0.00016341318
Pathogenic_in:Animal 0.00491101166
Shape:Irregular_coccus 0.00041481217
Shape:Rod 1.171e-2250347
Shape:Sphere 5.402e-81719
Shape:Spiral 3.061e-133034
Temp._range:Hyperthermophilic 8.697e-61723
Temp._range:Mesophilic 0.0091520131473



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 4
Effective number of orgs (counting one per cluster within 468 clusters): 4

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
BQUI283165 ncbi Bartonella quintana Toulouse 0.00508187176
BBAC360095 ncbi Bartonella bacilliformis KC583 0.00512467186
BHEN283166 ncbi Bartonella henselae Houston-1 0.00870127846
CCHL340177 ncbi Chlorobium chlorochromatii CaD3 0.00946247956


Names of the homologs of the genes in the group in each of these orgs
  G7379   G7082   G6122   EG11312   EG10886   EG10004   
BQUI283165 BQ06240BQ06240BQ06240BQ06240BQ12830BQ00340
BBAC360095 BARBAKC583_0830BARBAKC583_0830BARBAKC583_0830BARBAKC583_0830BARBAKC583_0077BARBAKC583_1349
BHEN283166 BH08340BH08340BH08340BH08340BH15920BH00380
CCHL340177 CAG_1513CAG_1513CAG_1513CAG_1513CAG_1743CAG_1614


Organism features enriched in list (features available for 4 out of the 4 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Bacillary_angiomatosis 0.000035422
Disease:Carrion's_disease 0.006861111
Disease:Cat_scratch_fever 0.006861111
Disease:Oroya_fever 0.006861111
Disease:Trench_fever 0.006861111



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951650.6312
GLYCOCAT-PWY (glycogen degradation I)2461870.6130
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251750.5977
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861970.5643
PWY-5918 (heme biosynthesis I)2721910.5634
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491310.5623
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3002020.5597
TYRFUMCAT-PWY (tyrosine degradation I)1841460.5355
PWY-5028 (histidine degradation II)1301150.5207
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491740.5165
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491740.5165
PWY-1269 (CMP-KDO biosynthesis I)3252040.5088
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181580.5035
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831410.5030
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911890.4980
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961900.4912
AST-PWY (arginine degradation II (AST pathway))1201050.4856
PWY-4041 (γ-glutamyl cycle)2791820.4843
GLUCONSUPER-PWY (D-gluconate degradation)2291600.4824
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901860.4809
VALDEG-PWY (valine degradation I)2901860.4809
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911410.4746
NAGLIPASYN-PWY (lipid IVA biosynthesis)3482070.4723
CHOLINE-BETAINE-ANA-PWY (choline degradation I)1351110.4660
GALACTARDEG-PWY (D-galactarate degradation I)1511190.4616
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))1381120.4610
GLUTATHIONESYN-PWY (glutathione biosynthesis)3392010.4544
GALACTCAT-PWY (D-galactonate degradation)104920.4539
DAPLYSINESYN-PWY (lysine biosynthesis I)3422020.4537
PWY-5148 (acyl-CoA hydrolysis)2271540.4476
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3652090.4452
PWY-5913 (TCA cycle variation IV)3011850.4451
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561190.4417
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222270.4393
PWY-5669 (phosphatidylethanolamine biosynthesis I)4162250.4383
PWY-6196 (serine racemization)102890.4377
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001830.4346
PWY-5084 (2-ketoglutarate dehydrogenase complex)3261930.4338
PWY-561 (superpathway of glyoxylate cycle)1621210.4337
PWY-5386 (methylglyoxal degradation I)3051840.4281
GLUCARDEG-PWY (D-glucarate degradation I)1521150.4269
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551630.4252
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96840.4243
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3982170.4231
GLYOXYLATE-BYPASS (glyoxylate cycle)1691230.4225
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761260.4192
PWY-5340 (sulfate activation for sulfonation)3852120.4188
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)1351050.4181
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911330.4175
SO4ASSIM-PWY (sulfate reduction I (assimilatory))3111840.4126
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94810.4076
PWY-46 (putrescine biosynthesis III)1381050.4055
PWY0-1313 (acetate conversion to acetyl-CoA)3852100.4052
PWY0-862 (cis-dodecenoyl biosynthesis)3431950.4050



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7082   G6122   EG11312   EG10886   EG10004   
G73790.9999730.9999690.9998910.9993790.999327
G70820.999970.9999010.9994020.999404
G61220.9998840.9993120.999329
EG113120.999660.99967
EG108860.999597
EG10004



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PAIRWISE BLAST SCORES:

  G7379   G7082   G6122   EG11312   EG10886   EG10004   
G73790.0f05.2e-543.0e-586.0e-28--
G70821.4e-460.0f05.2e-546.6e-22--
G61224.6e-539.1e-570.0f02.1e-25--
EG113126.0e-282.6e-273.7e-280.0f0--
EG10886----0.0f0-
EG10004-----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10004 EG10886 EG11312 (centered at EG11312)
G7379 (centered at G7379)
G7082 (centered at G7082)
G6122 (centered at G6122)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7379   G7082   G6122   EG11312   EG10886   EG10004   
279/623283/623278/623329/623412/623419/623
AAEO224324:0:Tyes---560-0
AAUR290340:2:Tyes----0-
AAVE397945:0:Tyes00032222887821
ABAC204669:0:Tyes-----0
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