CANDIDATE ID: 185

CANDIDATE ID: 185

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9966930e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    6.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7539 (pppA) (b2972)
   Products of gene:
     - G7539-MONOMER (prepilin peptidase)

- EG12312 (coaE) (b0103)
   Products of gene:
     - EG12312-MONOMER (dephospho-CoA kinase)
       Reactions:
        dephospho-CoA + ATP  ->  ADP + coenzyme A + 2 H+
         In pathways
         PANTOSYN-PWY (pantothenate and coenzyme A biosynthesis I)
         PWY-4221 (PWY-4221)
         PWY-4242 (PWY-4242)
         COA-PWY (coenzyme A biosynthesis)

- EG12106 (hofB) (b0107)
   Products of gene:
     - EG12106-MONOMER (protein involved in plasmid replication)

- EG11798 (hofC) (b0106)
   Products of gene:
     - EG11798-MONOMER (protein transport protein HofC)

- EG11359 (gspO) (b3335)
   Products of gene:
     - EG11359-MONOMER (leader peptidase, integral membrane protein)
       Reactions:
        EC# 3.4.23.43
     - CPLX0-3382 (GspC-O secreton  complex)



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 217
Effective number of orgs (counting one per cluster within 468 clusters): 150

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A5
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110185
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103315
XFAS405440 ncbi Xylella fastidiosa M125
XFAS183190 ncbi Xylella fastidiosa Temecula15
XFAS160492 ncbi Xylella fastidiosa 9a5c5
XCAM487884 Xanthomonas campestris pv. paulliniae5
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-105
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80045
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339135
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3065
VVUL216895 ncbi Vibrio vulnificus CMCP65
VVUL196600 ncbi Vibrio vulnificus YJ0165
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106335
VFIS312309 ncbi Vibrio fischeri ES1145
VEIS391735 ncbi Verminephrobacter eiseniae EF01-25
VCHO345073 ncbi Vibrio cholerae O3955
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169615
TTUR377629 ncbi Teredinibacter turnerae T79015
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB44
TSP1755 Thermoanaerobacter sp.4
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332234
TELO197221 ncbi Thermosynechococcus elongatus BP-14
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252595
TCRU317025 ncbi Thiomicrospira crunogena XCL-25
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
SSP94122 ncbi Shewanella sp. ANA-35
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)4
SSP321327 ncbi Synechococcus sp. JA-3-3Ab5
SSED425104 ncbi Shewanella sediminis HAW-EB35
SPRO399741 ncbi Serratia proteamaculans 5685
SPEA398579 ncbi Shewanella pealeana ATCC 7003455
SONE211586 ncbi Shewanella oneidensis MR-15
SLOI323850 ncbi Shewanella loihica PV-45
SHAL458817 ncbi Shewanella halifaxensis HAW-EB45
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB5
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SDEN318161 ncbi Shewanella denitrificans OS2175
SDEG203122 ncbi Saccharophagus degradans 2-405
SBAL402882 ncbi Shewanella baltica OS1855
SBAL399599 ncbi Shewanella baltica OS1955
SALA317655 ncbi Sphingopyxis alaskensis RB22564
SACI56780 ncbi Syntrophus aciditrophicus SB5
RSOL267608 ncbi Ralstonia solanacearum GMI10005
RMET266264 ncbi Ralstonia metallidurans CH345
RFER338969 ncbi Rhodoferax ferrireducens T1185
REUT381666 ncbi Ralstonia eutropha H165
REUT264198 ncbi Ralstonia eutropha JMP1345
PTHE370438 ncbi Pelotomaculum thermopropionicum SI4
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30005
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a5
PSTU379731 ncbi Pseudomonas stutzeri A15015
PSP56811 Psychrobacter sp.5
PSP296591 ncbi Polaromonas sp. JS6665
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS95
PNAP365044 ncbi Polaromonas naphthalenivorans CJ25
PMEN399739 ncbi Pseudomonas mendocina ymp5
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO15
PING357804 ncbi Psychromonas ingrahamii 375
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1255
PFLU220664 ncbi Pseudomonas fluorescens Pf-55
PFLU216595 ncbi Pseudomonas fluorescens SBW255
PFLU205922 ncbi Pseudomonas fluorescens Pf0-15
PENT384676 ncbi Pseudomonas entomophila L485
PCRY335284 ncbi Psychrobacter cryohalolentis K55
PCAR338963 ncbi Pelobacter carbinolicus DSM 23805
PATL342610 ncbi Pseudoalteromonas atlantica T6c5
PARC259536 ncbi Psychrobacter arcticus 273-45
PAER208964 ncbi Pseudomonas aeruginosa PAO15
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA145
NSP35761 Nocardioides sp.4
NSP103690 ncbi Nostoc sp. PCC 71204
NOCE323261 ncbi Nitrosococcus oceani ATCC 197075
NMUL323848 ncbi Nitrosospira multiformis ATCC 251965
NMEN374833 ncbi Neisseria meningitidis 0534425
NMEN272831 ncbi Neisseria meningitidis FAM185
NMEN122587 ncbi Neisseria meningitidis Z24915
NMEN122586 ncbi Neisseria meningitidis MC585
NGON242231 ncbi Neisseria gonorrhoeae FA 10905
NEUT335283 ncbi Nitrosomonas eutropha C914
NEUR228410 ncbi Nitrosomonas europaea ATCC 197184
MXAN246197 ncbi Myxococcus xanthus DK 16225
MTHE264732 ncbi Moorella thermoacetica ATCC 390734
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E5
MPET420662 ncbi Methylibium petroleiphilum PM15
MMAR394221 ncbi Maricaulis maris MCS105
MFLA265072 ncbi Methylobacillus flagellatus KT5
MCAP243233 ncbi Methylococcus capsulatus Bath5
MAQU351348 ncbi Marinobacter aquaeolei VT85
MAER449447 ncbi Microcystis aeruginosa NIES-8434
LPNE400673 ncbi Legionella pneumophila Corby5
LPNE297246 ncbi Legionella pneumophila Paris5
LPNE297245 ncbi Legionella pneumophila Lens5
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 15
LCHO395495 ncbi Leptothrix cholodnii SP-65
KRAD266940 ncbi Kineococcus radiotolerans SRS302164
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
JSP375286 ncbi Janthinobacterium sp. Marseille5
ILOI283942 ncbi Idiomarina loihiensis L2TR5
HNEP81032 Hyphomonas neptunium4
HMOD498761 ncbi Heliobacterium modesticaldum Ice14
HINF71421 ncbi Haemophilus influenzae Rd KW205
HINF374930 ncbi Haemophilus influenzae PittEE4
HINF281310 ncbi Haemophilus influenzae 86-028NP5
HHAL349124 ncbi Halorhodospira halophila SL15
HCHE349521 ncbi Hahella chejuensis KCTC 23965
HARS204773 ncbi Herminiimonas arsenicoxydans5
GVIO251221 ncbi Gloeobacter violaceus PCC 74215
GURA351605 ncbi Geobacter uraniireducens Rf45
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-24
GSUL243231 ncbi Geobacter sulfurreducens PCA5
GMET269799 ncbi Geobacter metallireducens GS-155
GKAU235909 ncbi Geobacillus kaustophilus HTA4264
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-005
FTUL418136 ncbi Francisella tularensis tularensis WY96-34185
FTUL401614 ncbi Francisella novicida U1125
FTUL393115 ncbi Francisella tularensis tularensis FSC1985
FTUL393011 ncbi Francisella tularensis holarctica OSU185
FTUL351581 Francisella tularensis holarctica FSC2005
FRANT ncbi Francisella tularensis tularensis SCHU S45
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250175
EFER585054 ncbi Escherichia fergusonii ATCC 354695
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough4
DSP255470 ncbi Dehalococcoides sp. CBDB14
DSP216389 ncbi Dehalococcoides sp. BAV14
DRED349161 ncbi Desulfotomaculum reducens MI-14
DRAD243230 ncbi Deinococcus radiodurans R14
DPSY177439 ncbi Desulfotalea psychrophila LSv545
DOLE96561 ncbi Desulfococcus oleovorans Hxd34
DNOD246195 ncbi Dichelobacter nodosus VCS1703A5
DETH243164 ncbi Dehalococcoides ethenogenes 1954
DARO159087 ncbi Dechloromonas aromatica RCB5
CVIO243365 ncbi Chromobacterium violaceum ATCC 124725
CSP78 Caulobacter sp.4
CSAL290398 ncbi Chromohalobacter salexigens DSM 30435
CPSY167879 ncbi Colwellia psychrerythraea 34H5
CJAP155077 Cellvibrio japonicus5
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29014
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C4
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1115
CBUR360115 ncbi Coxiella burnetii RSA 3315
CBUR227377 ncbi Coxiella burnetii RSA 4935
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B4
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80525
CAULO ncbi Caulobacter crescentus CB155
BVIE269482 ncbi Burkholderia vietnamiensis G45
BTHA271848 ncbi Burkholderia thailandensis E2645
BSP376 Bradyrhizobium sp.4
BSP36773 Burkholderia sp.5
BPSE320373 ncbi Burkholderia pseudomallei 6685
BPSE320372 ncbi Burkholderia pseudomallei 1710b5
BPSE272560 ncbi Burkholderia pseudomallei K962435
BPET94624 Bordetella petrii4
BMAL320389 ncbi Burkholderia mallei NCTC 102475
BMAL320388 ncbi Burkholderia mallei SAVP15
BMAL243160 ncbi Burkholderia mallei ATCC 233445
BCEN331272 ncbi Burkholderia cenocepacia HI24245
BCEN331271 ncbi Burkholderia cenocepacia AU 10545
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1005
BAMB398577 ncbi Burkholderia ambifaria MC40-65
BAMB339670 ncbi Burkholderia ambifaria AMMD5
AVAR240292 ncbi Anabaena variabilis ATCC 294134
ASP76114 ncbi Aromatoleum aromaticum EbN15
ASP62977 ncbi Acinetobacter sp. ADP15
ASP62928 ncbi Azoarcus sp. BH725
ASP232721 ncbi Acidovorax sp. JS425
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4495
AORE350688 ncbi Alkaliphilus oremlandii OhILAs4
AMET293826 ncbi Alkaliphilus metalliredigens QYMF4
AMAR329726 ncbi Acaryochloris marina MBIC110175
AHYD196024 Aeromonas hydrophila dhakensis5
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232705
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-15
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C4
ACEL351607 ncbi Acidothermus cellulolyticus 11B4
ABOR393595 ncbi Alcanivorax borkumensis SK25
ABAU360910 ncbi Bordetella avium 197N4
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3455
AAVE397945 ncbi Acidovorax citrulli AAC00-15


Names of the homologs of the genes in the group in each of these orgs
  G7539   EG12312   EG12106   EG11798   EG11359   
YPSE349747 YPSIP31758_0963YPSIP31758_3374YPSIP31758_3371YPSIP31758_3372YPSIP31758_0963
YPSE273123 YPTB3055YPTB0702YPTB0706YPTB0705YPTB3055
YPES386656 YPDSF_0703YPDSF_2925YPDSF_2928YPDSF_2927YPDSF_0703
YPES377628 YPN_3010YPN_0659YPN_0662YPN_0661YPN_3010
YPES360102 YPA_0463YPA_2931YPA_2928YPA_2929YPA_0463
YPES349746 YPANGOLA_A3259YPANGOLA_A1045YPANGOLA_A1042YPANGOLA_A1043YPANGOLA_A3259
YPES214092 YPO0806YPO3430YPO3426YPO3427YPO0806
YPES187410 Y3195Y0757Y0760Y0759Y3195
YENT393305 YE3574YE0685YE0689YE0688YE3574
XORY360094 XOOORF_1525XOOORF_1524XOOORF_0389XOOORF_1526XOOORF_1525
XORY342109 XOO1466XOO1465XOO4144XOO1467XOO1466
XORY291331 XOO1584XOO1583XOO4400XOO1585XOO1584
XFAS405440 XFASM12_2107XFASM12_2106XFASM12_2114XFASM12_2108XFASM12_2107
XFAS183190 PD_1922PD_1921PD_0732PD_1923PD_1922
XFAS160492 XF2537XF2536XF1517XF2538XF2537
XCAM487884 XCC-B100_1087XCC-B100_1086XCC-B100_4291XCC-B100_1088XCC-B100_1087
XCAM316273 XCAORF_3447XCAORF_3448XCAORF_0159XCAORF_3763XCAORF_3447
XCAM314565 XC_1056XC_1055XC_4179XC_1057XC_1056
XCAM190485 XCC3101XCC3102XCC4088XCC3100XCC3101
XAXO190486 XAC3243XAC3244XAC4212XAC3242XAC3243
VVUL216895 VV1_1623VV1_1622VV1_1625VV1_1624VV1_1623
VVUL196600 VV2781VV2782VV2779VV2780VV2781
VPAR223926 VP2526VP2527VP2524VP2525VP2526
VFIS312309 VF2188VF2189VF2186VF2187VF2188
VEIS391735 VEIS_3921VEIS_3922VEIS_0688VEIS_0687VEIS_3921
VCHO345073 VC0395_A2002VC0395_A2003VC0395_A2000VC0395_A2001VC0395_A2002
VCHO VC2426VC2427VC2424VC2425VC2426
TTUR377629 TERTU_3036TERTU_3037TERTU_0266TERTU_3035TERTU_3036
TTEN273068 TTE1266TTE0875TTE1262TTE1264
TSP1755 TETH514_1508TETH514_2155TETH514_1504TETH514_1506
TPSE340099 TETH39_1071TETH39_1473TETH39_1067TETH39_1069
TELO197221 TLL0476TLR0898TLL0122TLL0476
TDEN292415 TBD_2368TBD_2367TBD_0752TBD_2369TBD_2368
TCRU317025 TCR_1391TCR_0594TCR_0251TCR_0252TCR_1391
STYP99287 STM3442STM0140STM0143STM0142STM3442
SSP94122 SHEWANA3_0417SHEWANA3_0416SHEWANA3_0419SHEWANA3_0418SHEWANA3_0417
SSP321332 CYB_0909CYB_1306CYB_2141CYB_0909
SSP321327 CYA_1318CYA_0565CYA_1965CYA_1967CYA_1318
SSED425104 SSED_0423SSED_0422SSED_0425SSED_0424SSED_0423
SPRO399741 SPRO_4241SPRO_0774SPRO_0777SPRO_0776SPRO_4241
SPEA398579 SPEA_0411SPEA_0410SPEA_0413SPEA_0412SPEA_0411
SONE211586 SO_0414SO_0413SO_0416SO_0415SO_0414
SLOI323850 SHEW_3440SHEW_3441SHEW_3438SHEW_3439SHEW_3440
SHAL458817 SHAL_0468SHAL_0467SHAL_0470SHAL_0469SHAL_0468
SFUM335543 SFUM_0214SFUM_0161SFUM_0117SFUM_0118SFUM_0214
SFLE373384 SFV_3341SFV_0095SFV_0097SFV_3341
SFLE198214 AAN44817.1AAN41765.1AAN41768.1AAN44817.1
SENT454169 SEHA_C3746SEHA_C0154SEHA_C0157SEHA_C0156SEHA_C3746
SENT321314 SCH_3376SCH_0139SCH_0142SCH_0141SCH_3376
SENT295319 SPA3308SPA0144SPA0147SPA0146SPA3308
SENT220341 STY4356STY0162STY0165STY0164STY4356
SENT209261 T4063T0146T0149T0148T4063
SDEN318161 SDEN_3391SDEN_3392SDEN_3389SDEN_3390SDEN_3391
SDEG203122 SDE_0861SDE_0860SDE_3579SDE_0862SDE_0861
SBAL402882 SHEW185_3944SHEW185_3945SHEW185_3942SHEW185_3943SHEW185_3944
SBAL399599 SBAL195_4062SBAL195_4063SBAL195_4060SBAL195_4061SBAL195_4062
SALA317655 SALA_0326SALA_0316SALA_0317SALA_0326
SACI56780 SYN_00575SYN_02876SYN_01549SYN_01550SYN_00575
RSOL267608 RSC2827RSC2828RSC3115RSC3116RSC2827
RMET266264 RMET_3110RMET_3111RMET_3393RMET_3109RMET_3110
RFER338969 RFER_2904RFER_2905RFER_2902RFER_2903RFER_2904
REUT381666 H16_A3257H16_A3258H16_A3544H16_A3256H16_A3257
REUT264198 REUT_A2962REUT_A2963REUT_A3230REUT_A2961REUT_A2962
PTHE370438 PTH_1144PTH_1979PTH_1145PTH_1136
PSYR223283 PSPTO_0924PSPTO_0923PSPTO_0926PSPTO_0925PSPTO_0924
PSYR205918 PSYR_0796PSYR_0795PSYR_0798PSYR_0797PSYR_0796
PSTU379731 PST_1057PST_1058PST_1055PST_1056PST_1057
PSP56811 PSYCPRWF_0149PSYCPRWF_0148PSYCPRWF_0151PSYCPRWF_0150PSYCPRWF_0149
PSP296591 BPRO_0843BPRO_0844BPRO_0841BPRO_0842BPRO_0843
PPUT76869 PPUTGB1_0678PPUTGB1_0677PPUTGB1_1045PPUTGB1_0678
PPUT351746 PPUT_0673PPUT_0672PPUT_0674PPUT_0673
PPUT160488 PP_0632PP_0631PP_0633PP_0632
PPRO298386 PBPRA3203PBPRA3204PBPRA3201PBPRA3202PBPRA3203
PNAP365044 PNAP_0768PNAP_0769PNAP_0766PNAP_0767PNAP_0768
PMEN399739 PMEN_0773PMEN_0772PMEN_0775PMEN_0774PMEN_0773
PLUM243265 PLU1733PLU3641PLU3639PLU3640PLU1186
PING357804 PING_3325PING_1159PING_0480PING_0481PING_3325
PHAL326442 PSHAA0380PSHAA0379PSHAA0378PSHAA0381PSHAA0380
PFLU220664 PFL_5289PFL_5290PFL_2757PFL_5288PFL_5289
PFLU216595 PFLU0790PFLU0789PFLU4080PFLU0791PFLU0790
PFLU205922 PFL_4822PFL_4823PFL_4820PFL_4821PFL_4822
PENT384676 PSEEN4668PSEEN4669PSEEN2333PSEEN4667PSEEN4668
PCRY335284 PCRYO_0067PCRYO_0066PCRYO_0069PCRYO_0068PCRYO_0067
PCAR338963 PCAR_2139PCAR_0757PCAR_2149PCAR_2147PCAR_2139
PATL342610 PATL_3342PATL_3341PATL_0232PATL_3343PATL_3342
PARC259536 PSYC_0062PSYC_0061PSYC_0064PSYC_0063PSYC_0062
PAER208964 PA4528PA4529PA4526PA4527PA4528
PAER208963 PA14_58770PA14_58780PA14_58750PA14_58760PA14_58770
NSP35761 NOCA_1136NOCA_2981NOCA_1127NOCA_2411
NSP103690 ALR1315ALL1754ALL2442ALR1315
NOCE323261 NOC_0310NOC_0309NOC_2895NOC_0311NOC_0310
NMUL323848 NMUL_A2131NMUL_A2130NMUL_A1903NMUL_A1904NMUL_A2131
NMEN374833 NMCC_1811NMCC_1812NMCC_1814NMCC_1810NMCC_1811
NMEN272831 NMC1839NMC1841NMC1844NMC1838NMC1839
NMEN122587 NMA2156NMA2157NMA2159NMA2155NMA2156
NMEN122586 NMB_0332NMB_0331NMB_0329NMB_0333NMB_0332
NGON242231 NGO1670NGO1671NGO1673NGO1669NGO1670
NEUT335283 NEUT_1044NEUT_1045NEUT_1043NEUT_1044
NEUR228410 NE0597NE0598NE0596NE0597
MXAN246197 MXAN_5779MXAN_3021MXAN_5788MXAN_2512MXAN_5779
MTHE264732 MOTH_1550MOTH_1838MOTH_1554MOTH_1552
MSUC221988 MS0360MS0359MS0363MS0361MS0360
MPET420662 MPE_A0507MPE_A0506MPE_A0509MPE_A0508MPE_B0304
MMAR394221 MMAR10_0392MMAR10_2977MMAR10_0382MMAR10_0383MMAR10_0392
MFLA265072 MFLA_2225MFLA_2226MFLA_2141MFLA_2142MFLA_2225
MCAP243233 MCA_2094MCA_2093MCA_2096MCA_2095MCA_2094
MAQU351348 MAQU_2683MAQU_2684MAQU_2648MAQU_2682MAQU_2683
MAER449447 MAE_57525MAE_31370MAE_04110MAE_57525
LPNE400673 LPC_0943LPC_0882LPC_0941LPC_0942LPC_0943
LPNE297246 LPP1481LPP1423LPP1479LPP1480LPP1481
LPNE297245 LPL1502LPL1561LPL1504LPL1503LPL1502
LPNE272624 LPG1524LPG1467LPG1522LPG1523LPG1524
LCHO395495 LCHO_0548LCHO_0547LCHO_0550LCHO_3098LCHO_0548
KRAD266940 KRAD_3020KRAD_2943KRAD_1156KRAD_3026
KPNE272620 GKPORF_B4434GKPORF_B4386GKPORF_B4390GKPORF_B4389GKPORF_B4434
JSP375286 MMA_2998MMA_2999MMA_2996MMA_2997MMA_2998
ILOI283942 IL0450IL0449IL2025IL2024IL0450
HNEP81032 HNE_2653HNE_1866HNE_1867HNE_2653
HMOD498761 HM1_0253HM1_1752HM1_0249HM1_0251
HINF71421 HI_0296HI_0890HI_0298HI_0297HI_0296
HINF374930 CGSHIEE_01575CGSHIEE_07575CGSHIEE_01565CGSHIEE_01570
HINF281310 NTHI0406NTHI1055NTHI0408NTHI0407NTHI0406
HHAL349124 HHAL_2022HHAL_2023HHAL_2020HHAL_2371HHAL_2022
HCHE349521 HCH_05280HCH_05281HCH_05278HCH_05279HCH_05280
HARS204773 HEAR2791HEAR2792HEAR0759HEAR2790HEAR2791
GVIO251221 GLR2433GLR2134GLL0921GLL2665GLR2433
GURA351605 GURA_1800GURA_3643GURA_2682GURA_2680GURA_1800
GTHE420246 GTNG_2555GTNG_2652GTNG_2559GTNG_2557
GSUL243231 GSU_2043GSU_0513GSU_1491GSU_1493GSU_2043
GMET269799 GMET_0959GMET_3026GMET_1393GMET_1395GMET_0959
GKAU235909 GK2625GK2727GK2629GK2627
FTUL458234 FTA_1010FTA_0326FTA_0877FTA_0876FTA_1010
FTUL418136 FTW_1045FTW_0806FTW_1166FTW_1167FTW_1045
FTUL401614 FTN_1000FTN_1496FTN_1115FTN_1116FTN_1000
FTUL393115 FTF0683CFTF1487FTF1133FTF1134FTF0683C
FTUL393011 FTH_0937FTH_0308FTH_0818FTH_0817FTH_0937
FTUL351581 FTL_0959FTL_0307FTL_0828FTL_0827FTL_0959
FRANT PILDCOAEPILBPILCPILD
FPHI484022 FPHI_1587FPHI_1144FPHI_0117FPHI_0118FPHI_1587
EFER585054 EFER_2912EFER_0124EFER_0127EFER_0126EFER_3306
ECOO157 HOPDYACEHOFBHOFCHOPD
ECOL83334 ECS4188ECS0107ECS0111ECS0110ECS4188
ECOL585397 ECED1_3615ECED1_0102ECED1_0105ECED1_0104ECED1_3615
ECOL585057 ECIAI39_3459ECIAI39_0104ECIAI39_0107ECIAI39_0106ECIAI39_3816
ECOL585056 ECUMN_3447ECUMN_0101ECUMN_0104ECUMN_0103ECUMN_3796
ECOL585055 EC55989_3381EC55989_0097EC55989_0100EC55989_0099EC55989_3739
ECOL585035 ECS88_3347ECS88_0106ECS88_0109ECS88_0108ECS88_3723
ECOL585034 ECIAI1_3113ECIAI1_0101ECIAI1_0104ECIAI1_0103ECIAI1_3472
ECOL481805 ECOLC_0378ECOLC_3555ECOLC_3552ECOLC_3553ECOLC_0378
ECOL469008 ECBD_0766ECBD_3515ECBD_3512ECBD_3513ECBD_0416
ECOL439855 ECSMS35_3250ECSMS35_0107ECSMS35_0110ECSMS35_0109ECSMS35_3618
ECOL413997 ECB_02841ECB_00103ECB_00106ECB_00105ECB_03186
ECOL409438 ECSE_3248ECSE_0104ECSE_0107ECSE_0106ECSE_3597
ECOL405955 APECO1_3455APECO1_1885APECO1_1882APECO1_1883APECO1_3117
ECOL364106 UTI89_C3388UTI89_C0111UTI89_C0114UTI89_C0113UTI89_C3790
ECOL362663 ECP_3049ECP_0104ECP_0107ECP_0106ECP_3425
ECOL331111 ECE24377A_3430ECE24377A_0105ECE24377A_0109ECE24377A_3425ECE24377A_3806
ECOL316407 ECK2967:JW2939:B2972ECK0103:JW0100:B0103ECK0106:JW0103:B0107ECK0105:JW0102:B0106ECK3322:JW3297:B3335
ECOL199310 C4106C0123C0126C0125C4106
ECAR218491 ECA3098ECA3802ECA3799ECA3800ECA3098
DVUL882 DVU_1263DVU_1272DVU_1271DVU_1263
DSP255470 CBDBA1313CBDBA1268CBDBA1303CBDBA1313
DSP216389 DEHABAV1_1173DEHABAV1_1134DEHABAV1_1164DEHABAV1_1173
DRED349161 DRED_1047DRED_1596DRED_1034DRED_1036
DRAD243230 DR_2065DR_1892DR_1863DR_2065
DPSY177439 DP3017DP2729DP2226DP2782DP3017
DOLE96561 DOLE_1855DOLE_2184DOLE_2849DOLE_1855
DNOD246195 DNO_1124DNO_1122DNO_1126DNO_1125DNO_1124
DETH243164 DET_1362DET_1323DET_1352DET_1362
DARO159087 DARO_0637DARO_3709DARO_0879DARO_0638DARO_0637
CVIO243365 CV_3826CV_3825CV_3813CV_3827CV_3826
CSP78 CAUL_2122CAUL_2089CAUL_2090CAUL_2122
CSAL290398 CSAL_2176CSAL_2177CSAL_2174CSAL_2175CSAL_2176
CPSY167879 CPS_4449CPS_4450CPS_4447CPS_4448CPS_4449
CJAP155077 CJA_2732CJA_2733CJA_3331CJA_2731CJA_2732
CHYD246194 CHY_0634CHY_1647CHY_0630CHY_0632
CDES477974 DAUD_0967DAUD_1406DAUD_0968DAUD_0970
CBUR434922 COXBU7E912_1953COXBU7E912_1954COXBU7E912_1951COXBU7E912_1952COXBU7E912_1953
CBUR360115 COXBURSA331_A0245COXBURSA331_A0244COXBURSA331_A0247COXBURSA331_A0246COXBURSA331_A0245
CBUR227377 CBU_0153CBU_0152CBU_0155CBU_0154CBU_0153
CBOT508765 CLL_A3303CLL_A2644CLL_A3302CLL_A3301
CBEI290402 CBEI_4219CBEI_0802CBEI_4218CBEI_4217CBEI_4219
CAULO CC0184CC0004CC0174CC0175CC0184
BVIE269482 BCEP1808_0551BCEP1808_0550BCEP1808_0069BCEP1808_5248BCEP1808_0551
BTHA271848 BTH_I1134BTH_I1133BTH_I0008BTH_I0009BTH_I1134
BSP376 BRADO6338BRADO0201BRADO6348BRADO6338
BSP36773 BCEP18194_A3661BCEP18194_A3660BCEP18194_A3243BCEP18194_B1071BCEP18194_A3661
BPSE320373 BURPS668_3508BURPS668_3509BURPS668_0008BURPS668_0009BURPS668_3508
BPSE320372 BURPS1710B_A3811BURPS1710B_A3812BURPS1710B_A0233BURPS1710B_A0234BURPS1710B_A3811
BPSE272560 BPSL3010BPSL3011BPSL0008BPSL0009BPSL3010
BPET94624 BPET0532BPET0533BPET2864BPET0532
BMAL320389 BMA10247_3249BMA10247_3248BMA10247_2663BMA10247_2664BMA10247_3249
BMAL320388 BMASAVP1_A0455BMASAVP1_A0456BMASAVP1_A3517BMASAVP1_A3516BMASAVP1_A0455
BMAL243160 BMA_2533BMA_2534BMA_2785BMA_2784BMA_2533
BCEN331272 BCEN2424_0576BCEN2424_0575BCEN2424_0061BCEN2424_0060BCEN2424_0576
BCEN331271 BCEN_0094BCEN_0093BCEN_0009BCEN_0010BCEN_0094
BBAC264462 BD0862BD3147BD1509BD1595BD0862
BAMB398577 BAMMC406_0504BAMMC406_0503BAMMC406_0061BAMMC406_0060BAMMC406_0504
BAMB339670 BAMB_0479BAMB_0478BAMB_0051BAMB_0050BAMB_0479
AVAR240292 AVA_2985AVA_0282AVA_0374AVA_2985
ASP76114 EBA4343EBA4105EBA1622EBA1619EBA4343
ASP62977 ACIAD0360ACIAD0359ACIAD0362ACIAD0361ACIAD0360
ASP62928 AZO3236AZO0731AZO3234AZO3235AZO3236
ASP232721 AJS_0803AJS_0802AJS_0666AJS_0804AJS_0803
ASAL382245 ASA_0411ASA_0410ASA_0413ASA_3777ASA_0411
AORE350688 CLOS_1634CLOS_1207CLOS_1638CLOS_1636
AMET293826 AMET_3475AMET_3124AMET_3482AMET_3480
AMAR329726 AM1_2419AM1_2770AM1_2467AM1_0417AM1_2419
AHYD196024 AHA_3871AHA_3872AHA_3869AHA_3870AHA_3871
AFER243159 AFE_2840AFE_2839AFE_2843AFE_2075AFE_2840
AEHR187272 MLG_2081MLG_2082MLG_2079MLG_2080MLG_2081
ADEH290397 ADEH_0637ADEH_2684ADEH_0685ADEH_0624
ACEL351607 ACEL_1314ACEL_1091ACEL_1823ACEL_1320
ABOR393595 ABO_0612ABO_0611ABO_0614ABO_0613ABO_0612
ABAU360910 BAV0331BAV3045BAV0332BAV3046
ABAC204669 ACID345_1591ACID345_4423ACID345_1392ACID345_1390ACID345_1591
AAVE397945 AAVE_3682AAVE_3683AAVE_3680AAVE_3681AAVE_3682


Organism features enriched in list (features available for 204 out of the 217 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 3.311e-10892
Arrangment:Clusters 0.0055565117
Disease:Bubonic_plague 0.001748966
Disease:Gastroenteritis 0.00027531113
Disease:Tularemia 0.005079655
Endospores:No 5.062e-1237211
GC_Content_Range4:0-40 1.615e-2322213
GC_Content_Range4:40-60 3.479e-13119224
GC_Content_Range4:60-100 0.004013663145
GC_Content_Range7:0-30 2.235e-7247
GC_Content_Range7:30-40 8.201e-1520166
GC_Content_Range7:40-50 0.008247051117
GC_Content_Range7:50-60 1.633e-1168107
GC_Content_Range7:60-70 0.001286361134
Genome_Size_Range5:0-2 1.838e-1714155
Genome_Size_Range5:4-6 3.013e-11100184
Genome_Size_Range5:6-10 0.00057552747
Genome_Size_Range9:1-2 4.320e-1214128
Genome_Size_Range9:2-3 0.005095131120
Genome_Size_Range9:4-5 0.00037784896
Genome_Size_Range9:5-6 3.226e-75288
Genome_Size_Range9:6-8 0.00017392438
Gram_Stain:Gram_Neg 6.232e-20167333
Gram_Stain:Gram_Pos 1.469e-1515150
Habitat:Aquatic 0.00527544291
Habitat:Host-associated 0.000040851206
Habitat:Multiple 0.004365175178
Motility:No 6.080e-925151
Motility:Yes 1.824e-8125267
Optimal_temp.:- 0.0004827108257
Optimal_temp.:30-37 0.0037732118
Optimal_temp.:37 0.000214122106
Oxygen_Req:Anaerobic 0.002343624102
Oxygen_Req:Facultative 0.003310884201
Pathogenic_in:Plant 0.00210581115
Shape:Coccus 0.00002391382
Shape:Rod 8.563e-11157347
Shape:Spiral 0.0000491234
Temp._range:Hyperthermophilic 0.0032147223
Temp._range:Psychrophilic 0.000070099



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 310
Effective number of orgs (counting one per cluster within 468 clusters): 239

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TSP28240 Thermotoga sp.1
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB81
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX1
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE292459 ncbi Symbiobacterium thermophilum IAM 148631
SSP644076 Silicibacter sp. TrichCH4B0
SSP292414 ncbi Ruegeria sp. TM10401
SSP1131 Synechococcus sp. CC96051
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SPNE488221 ncbi Streptococcus pneumoniae 705851
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-61
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-141
SPNE171101 ncbi Streptococcus pneumoniae R61
SPNE170187 ncbi Streptococcus pneumoniae G541
SPNE1313 Streptococcus pneumoniae1
SMEL266834 ncbi Sinorhizobium meliloti 10211
SMED366394 ncbi Sinorhizobium medicae WSM4191
SMAR399550 ncbi Staphylothermus marinus F10
SLAC55218 Ruegeria lacuscaerulensis1
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SGOR29390 Streptococcus gordonii Challis1
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122281
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SCO ncbi Streptomyces coelicolor A3(2)1
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SARE391037 ncbi Salinispora arenicola CNS-2051
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170250
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170291
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.11
RSP101510 ncbi Rhodococcus jostii RHA11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111701
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-30
RPAL316058 ncbi Rhodopseudomonas palustris HaA21
RPAL316057 ncbi Rhodopseudomonas palustris BisB51
RPAL316056 ncbi Rhodopseudomonas palustris BisB181
RPAL258594 ncbi Rhodopseudomonas palustris CGA0091
RMAS416276 ncbi Rickettsia massiliae MTU50
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38410
RFEL315456 ncbi Rickettsia felis URRWXCal20
RETL347834 ncbi Rhizobium etli CFN 420
RDEN375451 ncbi Roseobacter denitrificans OCh 1140
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139411
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP117 Pirellula sp.1
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92151
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2731
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OCAR504832 ncbi Oligotropha carboxidovorans OM50
OANT439375 ncbi Ochrobactrum anthropi ATCC 491880
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NFAR247156 ncbi Nocardia farcinica IFM 101521
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP409 Methylobacterium sp.0
MSP266779 ncbi Chelativorans sp. BNC11
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLOT266835 ncbi Mesorhizobium loti MAFF3030991
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MEXT419610 ncbi Methylobacterium extorquens PA11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LMON265669 ncbi Listeria monocytogenes 4b F23651
LMON169963 ncbi Listeria monocytogenes EGD-e1
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINN272626 ncbi Listeria innocua Clip112621
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
JSP290400 ncbi Jannaschia sp. CCS10
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514491
HDUC233412 ncbi Haemophilus ducreyi 35000HP1
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GOXY290633 ncbi Gluconobacter oxydans 621H0
GFOR411154 ncbi Gramella forsetii KT08031
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI31
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25941
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA1
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP501479 Citreicella sp. SE451
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)1
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4111
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CCHL340177 ncbi Chlorobium chlorochromatii CaD31
CCAV227941 ncbi Chlamydophila caviae GPIC1
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto1
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6571
CBOT498213 ncbi Clostridium botulinum B1 str. Okra1
CBOT441772 ncbi Clostridium botulinum F str. Langeland1
CBOT441771 ncbi Clostridium botulinum A str. Hall1
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193971
CBOT36826 Clostridium botulinum A1
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN1
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CABO218497 ncbi Chlamydophila abortus S26/31
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSUI470137 ncbi Brucella suis ATCC 234450
BSUI204722 ncbi Brucella suis 13300
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)1
BQUI283165 ncbi Bartonella quintana Toulouse0
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23080
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M0
BLON206672 ncbi Bifidobacterium longum NCC27051
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1101
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCLA66692 ncbi Bacillus clausii KSM-K161
BCIC186490 Candidatus Baumannia cicadellinicola1
BCAN483179 ncbi Brucella canis ATCC 233650
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)1
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9410
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG11
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ACRY349163 ncbi Acidiphilium cryptum JF-51
ACAU438753 ncbi Azorhizobium caulinodans ORS 5710
ABUT367737 ncbi Arcobacter butzleri RM40180
AAUR290340 ncbi Arthrobacter aurescens TC11


Names of the homologs of the genes in the group in each of these orgs
  G7539   EG12312   EG12106   EG11798   EG11359   
ZMOB264203
XAUT78245
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TSP28240 TRQ2_1138
TPET390874 TPET_0992
TPEN368408
TPAL243276
TMAR243274 TM_1696
TKOD69014
TFUS269800 TFU_1192
TDEN326298 TMDEN_0996
TDEN243275
TACI273075
STOK273063
STHE322159 STER_0670
STHE299768 STR0722
STHE292459 STH851
SSP644076
SSP292414 TM1040_2859
SSP1131 SYNCC9605_2490
SSOL273057
SSAP342451 SSP1077
SRUB309807
SPYO370554 MGAS10750_SPY0422
SPYO370553 MGAS2096_SPY0428
SPYO370552 MGAS10270_SPY0410
SPYO370551 MGAS9429_SPY0408
SPYO319701 M28_SPY0397
SPYO293653 M5005_SPY0409
SPYO286636 M6_SPY0435
SPYO198466 SPYM3_0348
SPYO193567 SPS1506
SPYO186103 SPYM18_0556
SPYO160490 SPY0498
SPNE488221 SP70585_1011
SPNE487214 SPH_1072
SPNE487213 SPT_1232
SPNE171101 SPR0873
SPNE170187 SPN06150
SPNE1313 SPJ_0912
SMEL266834 SMC02790
SMED366394 SMED_3212
SMAR399550
SLAC55218 SL1157_1080
SHAE279808 SH1236
SGOR29390 SGO_0716
SEPI176280 SE_1365
SEPI176279 SERP1252
SCO SCO1996
SAVE227882 SAV6235
SAUR93062 SACOL1735
SAUR93061 SAOUHSC_01795
SAUR426430 NWMN_1581
SAUR418127 SAHV_1674
SAUR367830 SAUSA300_1634
SAUR359787 SAURJH1_1779
SAUR359786 SAURJH9_1745
SAUR282459 SAS1616
SAUR282458 SAR1767
SAUR273036 SAB1547C
SAUR196620 MW1631
SAUR158879 SA1511
SAUR158878 SAV1688
SARE391037 SARE_3368
SAGA211110 GBS1553
SAGA208435 SAG_1488
SAGA205921 SAK_1518
SACI330779
RTYP257363
RSPH349102
RSPH349101 RSPH17029_2896
RSPH272943 RSP_1235
RSP101510 RHA1_RO00978
RSAL288705 RSAL33209_2296
RRUB269796 RRU_A0108
RRIC452659
RRIC392021
RPRO272947
RPOM246200
RPAL316058 RPB_0397
RPAL316057 RPD_0424
RPAL316056 RPC_3012
RPAL258594 RPA0300
RMAS416276
RLEG216596
RFEL315456
RETL347834
RDEN375451
RCON272944
RCAS383372 RCAS_4180
RCAN293613
RBEL391896
RBEL336407
RAKA293614
PTOR263820
PSP117 RB8494
PRUM264731
PPEN278197
PMOB403833
PMAR93060 P9215_00591
PMAR59920
PMAR167555
PMAR167542 P9515ORF_0058
PMAR167540
PMAR167539
PMAR146891
PLUT319225 PLUT_0792
PISL384616
PINT246198
PHOR70601
PGIN242619
PFUR186497
PDIS435591
PAST100379
PARS340102
PAER178306
PACN267747 PPA0785
PABY272844
OTSU357244
OCAR504832
OANT439375
NWIN323098
NSEN222891
NPHA348780
NFAR247156 NFA18990
MVAN350058 MVAN_3353
MTUB419947 MRA_1641
MTUB336982 TBFG_11647
MTHE349307
MTHE187420
MTBRV RV1631
MTBCDC MT1667
MSYN262723
MSTA339860
MSP409
MSP266779 MESO_3481
MSP189918 MKMS_3050
MSP164757 MJLS_3019
MSP164756 MMCS_3004
MSME246196 MSMEG_3831
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MMAG342108
MLOT266835 MLL6828
MLEP272631 ML1383
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054 MFLV_3559
MGEN243273
MFLO265311
MEXT419610 MEXT_1488
MCAP340047
MBUR259564
MBOV410289 BCG_1669
MBOV233413 MB1657
MBAR269797
MAVI243243 MAV_3151
MART243272
MAEO419665
MACE188937
MABS561007 MAB_2298
LXYL281090 LXX11440
LWEL386043 LWE1576
LMON265669 LMOF2365_1585
LMON169963 LMO1563
LMES203120 LEUM_0529
LLAC272622 LACR_0692
LJOH257314 LJ_1649
LINT363253
LINN272626 LIN1598
LGAS324831 LGAS_1419
LDEL390333 LDB1510
LDEL321956 LBUL_1405
LCAS321967 LSEI_1707
LBRE387344 LVIS_1040
JSP290400
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963 JHP0770
HPYL357544 HPAG1_0817
HPY HP0831
HMUK485914
HMAR272569
HHEP235279 HH_1700
HDUC233412 HD_1127
HBUT415426
HAUR316274
HACI382638
GOXY290633
GFOR411154 GFO_0656
FSP1855 FRANEAN1_2048
FSP106370 FRANCCI3_1625
FNUC190304 FN1932
FMAG334413
FJOH376686 FJOH_3462
FALN326424 FRAAL4608
ERUM302409
ERUM254945
ELIT314225 ELI_12985
ECHA205920
ECAN269484
DSHI398580
DDES207559
CVES412965 COSY_0065
CTRA471473 CTLON_0828
CTRA471472 CTL0834
CTEP194439
CSUL444179
CSP501479 CSE45_3428
CRUT413404 RMAG_0061
CPRO264201 PC1897
CPNE182082 CPB0845
CPNE138677 CPJ0816
CPNE115713 CPN0816
CPNE115711 CP_1055
CPHY357809 CPHY_2819
CMUR243161 TC_0860
CMIC443906 CMM_1751
CMIC31964 CMS1995
CMET456442
CMAQ397948
CKOR374847
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537 JK0825
CHUT269798 CHU_2441
CGLU196627 CG1538
CFEL264202 CF0067
CEFF196164 CE1459
CDIP257309 DIP1152
CCHL340177 CAG_0965
CCAV227941 CCA_00947
CBOT536232 CLM_1491
CBOT515621 CLJ_B1429
CBOT498213 CLD_3243
CBOT441772 CLI_1409
CBOT441771 CLC_1353
CBOT441770 CLB_1343
CBOT36826 CBO1316
CBLO291272 BPEN_153
CBLO203907
CABO218497 CAB916
BXEN266265
BTUR314724
BTRI382640
BTHE226186
BSUI470137
BSUI204722
BSP107806 BU203
BQUI283165
BOVI236
BMEL359391
BMEL224914
BLON206672 BL0991
BJAP224911 BLR0639
BHER314723
BHEN283166
BGAR290434
BFRA295405
BFRA272559
BCLA66692 ABC2706
BCIC186490 BCI_0514
BCAN483179
BBUR224326
BBAC360095
BAPH372461
BAPH198804 BUSG197
BAFZ390236
BABO262698
AYEL322098
AURANTIMONAS
ASP1667 ARTH_2069
APHA212042
APER272557
ANAE240017 ANA_0691
AMAR234826
ALAI441768
AFUL224325
ACRY349163 ACRY_0894
ACAU438753
ABUT367737
AAUR290340 AAUR_2070


Organism features enriched in list (features available for 286 out of the 310 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.00070271517
Arrangment:Pairs 0.001125041112
Disease:Pharyngitis 0.003188888
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00035841111
Disease:Wide_range_of_infections 0.00035841111
Disease:bronchitis_and_pneumonitis 0.003188888
Endospores:No 6.967e-15148211
Endospores:Yes 0.00008541353
GC_Content_Range4:0-40 1.118e-13147213
GC_Content_Range4:40-60 1.495e-1171224
GC_Content_Range7:0-30 2.521e-63847
GC_Content_Range7:30-40 1.837e-7109166
GC_Content_Range7:40-50 0.000966343117
GC_Content_Range7:50-60 6.345e-828107
Genome_Size_Range5:0-2 9.462e-23127155
Genome_Size_Range5:4-6 1.547e-1448184
Genome_Size_Range9:0-1 2.313e-92727
Genome_Size_Range9:1-2 2.512e-14100128
Genome_Size_Range9:3-4 0.00978302977
Genome_Size_Range9:4-5 0.00002232996
Genome_Size_Range9:5-6 7.468e-91988
Gram_Stain:Gram_Neg 2.047e-11124333
Gram_Stain:Gram_Pos 0.000041794150
Habitat:Aquatic 0.00810793591
Habitat:Host-associated 5.323e-7129206
Habitat:Multiple 0.009053376178
Habitat:Terrestrial 0.0013510731
Motility:No 6.861e-9104151
Motility:Yes 9.726e-1095267
Optimal_temp.:- 0.0000103101257
Optimal_temp.:30-37 0.00004061718
Optimal_temp.:35-37 0.0017801113
Optimal_temp.:37 0.000930266106
Oxygen_Req:Aerobic 0.007982379185
Oxygen_Req:Anaerobic 0.002911062102
Oxygen_Req:Facultative 0.006245386201
Pathogenic_in:Animal 0.00258742266
Pathogenic_in:Human 0.0096990116213
Shape:Coccus 0.00001075882
Shape:Irregular_coccus 0.00070271517
Shape:Rod 5.089e-11132347
Shape:Sphere 0.00125171619
Temp._range:Hyperthermophilic 0.00065381923



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181590.5868
AST-PWY (arginine degradation II (AST pathway))1201080.5656
GLYCOCAT-PWY (glycogen degradation I)2461670.5604
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001820.5226
PWY-4041 (γ-glutamyl cycle)2791730.5137
PWY-5918 (heme biosynthesis I)2721700.5112
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951380.5091
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861720.4894
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481930.4871
PWY-1269 (CMP-KDO biosynthesis I)3251850.4842
PWY-5913 (TCA cycle variation IV)3011750.4730
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391880.4730
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911710.4703
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251450.4673
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961720.4648
TYRFUMCAT-PWY (tyrosine degradation I)1841270.4646
PWY-5386 (methylglyoxal degradation I)3051750.4634
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901690.4592
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911290.4565
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551540.4466
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761200.4392
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3982010.4375
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222040.4109
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831190.4087
GLUCONSUPER-PWY (D-gluconate degradation)2291380.4069
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491030.4036
PWY0-1182 (trehalose degradation II (trehalase))70620.4013
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291740.4009
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491450.4008
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491450.4008
PROSYN-PWY (proline biosynthesis I)4752160.4002



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG12312   EG12106   EG11798   EG11359   
G75390.9996870.99960.9997790.99993
EG123120.9993760.9996540.999746
EG121060.9998090.999436
EG117980.999676
EG11359



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PAIRWISE BLAST SCORES:

  G7539   EG12312   EG12106   EG11798   EG11359   
G75390.0f0---3.0e-19
EG12312-0.0f0---
EG12106--0.0f0--
EG11798---0.0f0-
EG113593.6e-13---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11798 EG12106 (centered at EG12106)
EG11359 (centered at EG11359)
EG12312 (centered at EG12312)
G7539 (centered at G7539)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7539   EG12312   EG12106   EG11798   EG11359   
317/623414/623237/623238/623216/623
AAEO224324:0:Tyes601-8690-
AAUR290340:2:Tyes-0---
AAVE397945:0:Tyes23012
ABAC204669:0:Tyes201305920201
ABAU360910:0:Tyes02720-12721
ABOR393595:0:Tyes10321
ACEL351607:0:Tyes2230732229-
ACRY349163:8:Tyes0----
ADEH290397:0:Tyes132082610-
AEHR187272:0:Tyes23012
AFER243159:0:Tyes7547537570754
AHYD196024:0:Tyes23012
AMAR329726:9:Tyes19762323202401976
AMET293826:0:Tyes3440351349-
ANAE240017:0:Tyes-0---
AORE350688:0:Tyes4260430428-
APLE416269:0:Tyes-03--
APLE434271:0:Tno-03--
ASAL382245:5:Tyes10232441
ASP1667:3:Tyes-0---
ASP232721:2:Tyes1371360138137
ASP62928:0:Tyes25520255025512552
ASP62977:0:Tyes10321
ASP76114:2:Tyes15991462101599
AVAR240292:3:Tyes27140-922714
BAMB339670:3:Tno45044910450
BAMB398577:3:Tno45645510456
BAMY326423:0:Tyes098---
BANT260799:0:Tno03239---
BANT261594:2:Tno03232---
BANT568206:2:Tyes01514---
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