CANDIDATE ID: 186

CANDIDATE ID: 186

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9986560e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages




GENE LIST:

- EG50003 (acpP) (b1094)
   Products of gene:
     - EG50003-MONOMER (apo-[acyl carrier protein])
       Regulatees:
     - ACP-MONOMER (holo-[acyl-carrier protein])
       Regulatees:
     - MYRISTOYL-ACP (myristoyl-ACP)
       Regulatees:
     - B-HYDROXYBUTYRYL-S-ACP (β-3-hydroxybutyryl-S-ACP)
       Regulatees:
     - LAUROYL-ACP (lauroyl-ACP)
       Regulatees:
     - TRANS-DELTA3-CIS-DELTA5-DODECENOYL-ACP (trans-Δ3-cis-Δ5-dodecenoyl-ACP)
     - STEAROYL-ACYL-CARRIER-PROTEIN (stearoyl-ACP)
       Regulatees:
     - R-3-HYDROXYPALMITOYL-ACP (R-3-hydroxypalmitoyl-ACP)
     - BUTYRYL-ACP (butyryl-ACP)
       Regulatees:
     - OLEOYL-ACYL-CARRIER-PROTEIN (oleoyl-ACP)
       Regulatees:
     - ACETOACETYL-S-ACP (acetoacetyl-ACP)
       Regulatees:
     - MONOMER-4603 (3R-3-hydroxybutanoyl-ACP)
     - CROTONYL-ACP (crotonyl-[acp])
       Regulatees:
     - MONOMER-4565 (2-octenoyl-ACP)
     - CIS-DELTA5-DODECENOYL-ACP (cis-Δ5-dodecenoyl-ACP)
     - BUT-2-ENOYL-ACP (but-2-enoyl-ACP)
     - PALMITOLEOYL-ACP (palmitoleoyl-ACP)
       Regulatees:
     - BETA-KETO-CIS-DELTA5-DODECENOYL-ACP (β-keto-cis-Δ5-dodecenoyl-ACP)
     - TRANS-D2-DECENOYL-ACP (trans-Δ2-decenoyl-[acp])
       Regulatees:
     - BETA-HYDROXY-CIS-DELTA5-DODECENOYL-ACP (β-hydroxy-cis-Δ5-dodecenoyl-ACP)
     - LIPOYL-ACP (lipoyl-ACP)
       Regulatees:
     - 3R-3-HYDROXYOCTANOYL-ACP ((3R)-3-hydroxyoctanoyl-ACP)
     - CIS-3-4-DEHYDRODECANOYL-ACP (cis-3,4-dehydrodecanoyl-ACP)
     - 2-HEXADECENOYL-ACP (2-hexadecenoyl-ACP)
     - CIS-DELTA3-DECENOYL-ACP (cis-Δ3-decenoyl-ACP)
     - SUCC-ACP (succ-ACP)
     - BETA-HYDROXYDECANOYL-ACP (β-hydroxydecanoyl-ACP)
       Regulatees:
     - OCTANOYL-ACP (octanoyl-ACP)
       Regulatees:
     - ACETYL-ECACP (acetyl-ACP)
       Regulatees:

- EG12606 (fabF) (b1095)
   Products of gene:
     - 3-OXOACYL-ACP-SYNTHII-MONOMER (FabF)
     - 3-OXOACYL-ACP-SYNTHII-CPLX (KASII)
       Reactions:
        a palmitoleoyl-[acp] + a malonyl-[acp]  ->  a 3-oxo-cis-vaccenoyl-[acp] + CO2 + a holo-[acp]
         In pathways
         PWY-6284 (superpathway of unsaturated fatty acids biosynthesis (E. coli))
         PWY-6285 (PWY-6285)
         PWY-5973 (cis-vaccenate biosynthesis)
        a malonyl-[acp] + an acetyl-[acp]  ->  a holo-[acp] + an acetoacetyl-[acp] + CO2
         In pathways
         PWY0-881 (superpathway of fatty acid biosynthesis I (E. coli))
         FASYN-INITIAL-PWY (superpathway of fatty acid biosynthesis initiation (E. coli))
         PWY-5965 (fatty acid biosynthesis initiation III)
         PWY-5966 (fatty acid biosynthesis initiation II)
        a malonyl-[acp] + a 2,3,4-saturated fatty acyl-[acp]  ->  a holo-[acp] + a beta-ketoacyl-[acp] + CO2
         In pathways
         PWY0-881 (superpathway of fatty acid biosynthesis I (E. coli))
         FASYN-ELONG-PWY (fatty acid elongation -- saturated)

- EG11494 (yceG) (b1097)
   Products of gene:
     - EG11494-MONOMER (predicted aminodeoxychorismate lyase)

- EG11318 (fabG) (b1093)
   Products of gene:
     - 3-OXOACYL-ACP-REDUCT-MONOMER (3-oxo-acyl-[acyl-carrier-protein] reductase)
       Reactions:
        a 3-oxo-glutaryl-[acp] methyl ester + NADPH + H+  ->  a 3-hydroxyglutaryl-[acp] methyl ester + NADP+
         In pathways
         BIOTIN-BIOSYNTHESIS-PWY (biotin biosynthesis I)
         PWY-6519 (7-keto-8-aminopelargonate biosynthesis I)
        a 3-oxo-pimeloyl-[acp] methyl ester + NADPH + H+  ->  a 3-hydroxypimeloyl-[acp] methyl ester + NADP+
         In pathways
         BIOTIN-BIOSYNTHESIS-PWY (biotin biosynthesis I)
         PWY-6519 (7-keto-8-aminopelargonate biosynthesis I)
        a 3-oxo-cis-delta9-hexadecenoyl-[acp] + NADPH + H+  ->  a 3-hydroxy cis delta9-hexadecenoyl-[acp] + NADP+
         In pathways
         PWY-6284 (superpathway of unsaturated fatty acids biosynthesis (E. coli))
         PWY-6285 (PWY-6285)
         PWY-6282 (palmitoleate biosynthesis I)
        a 3-oxo-cis-delta7-tetradecenoyl-[acp] + NADPH + H+  ->  a 3-hydroxy cis delta7-tetradecenoyl-[acp] + NADP+
         In pathways
         PWY-6284 (superpathway of unsaturated fatty acids biosynthesis (E. coli))
         PWY-6285 (PWY-6285)
         PWY-6282 (palmitoleate biosynthesis I)
        a 3-oxo-cis-delta5-dodecenoyl-[acp] + NADPH + H+  ->  a 3-hydroxy cis delta5-dodecenoyl-[acp] + NADP+
         In pathways
         PWY-6285 (PWY-6285)
         PWY-6284 (superpathway of unsaturated fatty acids biosynthesis (E. coli))
         PWY0-881 (superpathway of fatty acid biosynthesis I (E. coli))
         PWY0-862 (cis-dodecenoyl biosynthesis)
        a (3R)-3-hydroxyacyl-[acp] + NADP+  =  a beta-ketoacyl-[acp] + NADPH + H+
         In pathways
         PWY-5989 (PWY-5989)
         PWY-6284 (superpathway of unsaturated fatty acids biosynthesis (E. coli))
         PWY-5973 (cis-vaccenate biosynthesis)
         PWY-6285 (PWY-6285)
         PWY-6113 (PWY-6113)
         PWY-5156 (PWY-5156)
         PWY-5994 (PWY-5994)
         PWY-5971 (palmitate biosynthesis II (bacteria and plants))
         PWY0-881 (superpathway of fatty acid biosynthesis I (E. coli))
         FASYN-ELONG-PWY (fatty acid elongation -- saturated)

- EG11317 (fabD) (b1092)
   Products of gene:
     - MALONYL-COA-ACP-TRANSACYL-MONOMER (malonyl-CoA-ACP transacylase)
       Reactions:
        a holo-[acp] + malonyl-CoA  =  a malonyl-[acp] + coenzyme A
         In pathways
         PWY0-881 (superpathway of fatty acid biosynthesis I (E. coli))
         FASYN-INITIAL-PWY (superpathway of fatty acid biosynthesis initiation (E. coli))
         PWY-5156 (PWY-5156)
         PWY-6113 (PWY-6113)
         PWY-6285 (PWY-6285)
         PWY-4381 (fatty acid biosynthesis initiation I)



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 365
Effective number of orgs (counting one per cluster within 468 clusters): 257

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM45
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A5
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110185
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103315
XFAS405440 ncbi Xylella fastidiosa M125
XFAS183190 ncbi Xylella fastidiosa Temecula15
XFAS160492 ncbi Xylella fastidiosa 9a5c5
XCAM487884 Xanthomonas campestris pv. paulliniae5
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-105
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80045
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339135
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3065
XAUT78245 ncbi Xanthobacter autotrophicus Py25
VVUL216895 ncbi Vibrio vulnificus CMCP65
VVUL196600 ncbi Vibrio vulnificus YJ0165
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106335
VFIS312309 ncbi Vibrio fischeri ES1145
VEIS391735 ncbi Verminephrobacter eiseniae EF01-25
VCHO345073 ncbi Vibrio cholerae O3955
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169615
TTUR377629 ncbi Teredinibacter turnerae T79015
TTHE300852 ncbi Thermus thermophilus HB85
TTHE262724 ncbi Thermus thermophilus HB275
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB45
TSP1755 Thermoanaerobacter sp.5
TROS309801 ncbi Thermomicrobium roseum DSM 51595
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332235
TERY203124 ncbi Trichodesmium erythraeum IMS1014
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252595
TCRU317025 ncbi Thiomicrospira crunogena XCL-25
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen4
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
STHE292459 ncbi Symbiobacterium thermophilum IAM 148635
SSP94122 ncbi Shewanella sp. ANA-34
SSP644076 Silicibacter sp. TrichCH4B5
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)5
SSP321327 ncbi Synechococcus sp. JA-3-3Ab5
SSP292414 ncbi Ruegeria sp. TM10405
SSON300269 ncbi Shigella sonnei Ss0465
SSED425104 ncbi Shewanella sediminis HAW-EB35
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153054
SRUB309807 ncbi Salinibacter ruber DSM 138555
SPRO399741 ncbi Serratia proteamaculans 5685
SPEA398579 ncbi Shewanella pealeana ATCC 7003455
SONE211586 ncbi Shewanella oneidensis MR-15
SMEL266834 ncbi Sinorhizobium meliloti 10215
SMED366394 ncbi Sinorhizobium medicae WSM4195
SLOI323850 ncbi Shewanella loihica PV-45
SLAC55218 Ruegeria lacuscaerulensis5
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SHAL458817 ncbi Shewanella halifaxensis HAW-EB45
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14354
SGLO343509 ncbi Sodalis glossinidius morsitans5
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB5
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122284
SEPI176279 ncbi Staphylococcus epidermidis RP62A4
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SELO269084 ncbi Synechococcus elongatus PCC 63014
SDYS300267 ncbi Shigella dysenteriae Sd1975
SDEN318161 ncbi Shewanella denitrificans OS2175
SDEG203122 ncbi Saccharophagus degradans 2-405
SBOY300268 ncbi Shigella boydii Sb2275
SBAL402882 ncbi Shewanella baltica OS1855
SBAL399599 ncbi Shewanella baltica OS1955
SAUR93062 ncbi Staphylococcus aureus aureus COL4
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83254
SAUR426430 ncbi Staphylococcus aureus aureus Newman4
SAUR418127 ncbi Staphylococcus aureus aureus Mu34
SAUR367830 Staphylococcus aureus aureus USA3004
SAUR359787 ncbi Staphylococcus aureus aureus JH14
SAUR359786 ncbi Staphylococcus aureus aureus JH94
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4764
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2524
SAUR273036 ncbi Staphylococcus aureus RF1224
SAUR196620 ncbi Staphylococcus aureus aureus MW24
SAUR158879 ncbi Staphylococcus aureus aureus N3154
SAUR158878 ncbi Staphylococcus aureus aureus Mu504
SALA317655 ncbi Sphingopyxis alaskensis RB22565
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170255
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170295
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.15
RSP357808 ncbi Roseiflexus sp. RS-14
RSOL267608 ncbi Ralstonia solanacearum GMI10005
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111705
RRIC452659 ncbi Rickettsia rickettsii Iowa5
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith5
RPRO272947 ncbi Rickettsia prowazekii Madrid E4
RPOM246200 ncbi Ruegeria pomeroyi DSS-35
RPAL316058 ncbi Rhodopseudomonas palustris HaA25
RPAL316057 ncbi Rhodopseudomonas palustris BisB55
RPAL316056 ncbi Rhodopseudomonas palustris BisB185
RPAL316055 ncbi Rhodopseudomonas palustris BisA535
RPAL258594 ncbi Rhodopseudomonas palustris CGA0095
RMET266264 ncbi Ralstonia metallidurans CH345
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38415
RFER338969 ncbi Rhodoferax ferrireducens T1185
REUT381666 ncbi Ralstonia eutropha H165
REUT264198 ncbi Ralstonia eutropha JMP1345
RETL347834 ncbi Rhizobium etli CFN 425
RDEN375451 ncbi Roseobacter denitrificans OCh 1145
RCON272944 ncbi Rickettsia conorii Malish 74
RCAS383372 ncbi Roseiflexus castenholzii DSM 139415
RAKA293614 ncbi Rickettsia akari Hartford5
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30005
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a5
PSTU379731 ncbi Pseudomonas stutzeri A15015
PSP56811 Psychrobacter sp.5
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-15
PSP296591 ncbi Polaromonas sp. JS6665
PRUM264731 ncbi Prevotella ruminicola 234
PPUT76869 ncbi Pseudomonas putida GB-15
PPUT351746 ncbi Pseudomonas putida F15
PPUT160488 ncbi Pseudomonas putida KT24405
PPRO298386 ncbi Photobacterium profundum SS95
PNAP365044 ncbi Polaromonas naphthalenivorans CJ25
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PMEN399739 ncbi Pseudomonas mendocina ymp5
PLUT319225 ncbi Chlorobium luteolum DSM 2735
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO15
PING357804 ncbi Psychromonas ingrahamii 375
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1255
PGIN242619 ncbi Porphyromonas gingivalis W835
PFLU220664 ncbi Pseudomonas fluorescens Pf-55
PFLU216595 ncbi Pseudomonas fluorescens SBW255
PFLU205922 ncbi Pseudomonas fluorescens Pf0-15
PENT384676 ncbi Pseudomonas entomophila L485
PCRY335284 ncbi Psychrobacter cryohalolentis K55
PCAR338963 ncbi Pelobacter carbinolicus DSM 23805
PATL342610 ncbi Pseudoalteromonas atlantica T6c5
PARC259536 ncbi Psychrobacter arcticus 273-45
PAER208964 ncbi Pseudomonas aeruginosa PAO15
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA145
OIHE221109 ncbi Oceanobacillus iheyensis HTE8315
OCAR504832 ncbi Oligotropha carboxidovorans OM55
OANT439375 ncbi Ochrobactrum anthropi ATCC 491885
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2555
NSP387092 ncbi Nitratiruptor sp. SB155-24
NOCE323261 ncbi Nitrosococcus oceani ATCC 197075
NMUL323848 ncbi Nitrosospira multiformis ATCC 251965
NMEN374833 ncbi Neisseria meningitidis 0534425
NMEN272831 ncbi Neisseria meningitidis FAM185
NMEN122587 ncbi Neisseria meningitidis Z24915
NMEN122586 ncbi Neisseria meningitidis MC585
NHAM323097 ncbi Nitrobacter hamburgensis X145
NGON242231 ncbi Neisseria gonorrhoeae FA 10905
NEUT335283 ncbi Nitrosomonas eutropha C915
NEUR228410 ncbi Nitrosomonas europaea ATCC 197185
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124445
MXAN246197 ncbi Myxococcus xanthus DK 16224
MTHE264732 ncbi Moorella thermoacetica ATCC 390735
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSP409 Methylobacterium sp.5
MSP400668 ncbi Marinomonas sp. MWYL15
MSP266779 ncbi Chelativorans sp. BNC15
MPET420662 ncbi Methylibium petroleiphilum PM15
MMAR394221 ncbi Maricaulis maris MCS105
MMAG342108 ncbi Magnetospirillum magneticum AMB-15
MLOT266835 ncbi Mesorhizobium loti MAFF3030995
MFLA265072 ncbi Methylobacillus flagellatus KT5
MEXT419610 ncbi Methylobacterium extorquens PA15
MCAP243233 ncbi Methylococcus capsulatus Bath5
MAQU351348 ncbi Marinobacter aquaeolei VT85
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53345
LSPH444177 ncbi Lysinibacillus sphaericus C3-415
LPNE400673 ncbi Legionella pneumophila Corby5
LPNE297246 ncbi Legionella pneumophila Paris5
LPNE297245 ncbi Legionella pneumophila Lens5
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 15
LMON265669 ncbi Listeria monocytogenes 4b F23655
LMON169963 ncbi Listeria monocytogenes EGD-e5
LINN272626 ncbi Listeria innocua Clip112625
LCHO395495 ncbi Leptothrix cholodnii SP-65
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
JSP375286 ncbi Janthinobacterium sp. Marseille5
JSP290400 ncbi Jannaschia sp. CCS15
ILOI283942 ncbi Idiomarina loihiensis L2TR4
HSOM228400 ncbi Haemophilus somnus 23364
HSOM205914 ncbi Haemophilus somnus 129PT4
HNEP81032 Hyphomonas neptunium5
HMOD498761 ncbi Heliobacterium modesticaldum Ice15
HINF71421 ncbi Haemophilus influenzae Rd KW204
HINF374930 ncbi Haemophilus influenzae PittEE4
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HHAL349124 ncbi Halorhodospira halophila SL15
HDUC233412 ncbi Haemophilus ducreyi 35000HP4
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237794
HARS204773 ncbi Herminiimonas arsenicoxydans5
GVIO251221 ncbi Gloeobacter violaceus PCC 74215
GURA351605 ncbi Geobacter uraniireducens Rf45
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-25
GSUL243231 ncbi Geobacter sulfurreducens PCA5
GOXY290633 ncbi Gluconobacter oxydans 621H5
GMET269799 ncbi Geobacter metallireducens GS-155
GKAU235909 ncbi Geobacillus kaustophilus HTA4265
GFOR411154 ncbi Gramella forsetii KT08035
GBET391165 ncbi Granulibacter bethesdensis CGDNIH15
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-004
FTUL418136 ncbi Francisella tularensis tularensis WY96-34184
FTUL401614 ncbi Francisella novicida U1124
FTUL393115 ncbi Francisella tularensis tularensis FSC1984
FTUL393011 ncbi Francisella tularensis holarctica OSU184
FTUL351581 Francisella tularensis holarctica FSC2004
FRANT ncbi Francisella tularensis tularensis SCHU S44
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250174
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255865
FJOH376686 ncbi Flavobacterium johnsoniae UW1015
ESP42895 Enterobacter sp.5
ELIT314225 ncbi Erythrobacter litoralis HTCC25945
EFER585054 ncbi Escherichia fergusonii ATCC 354695
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough4
DSP255470 ncbi Dehalococcoides sp. CBDB14
DSP216389 ncbi Dehalococcoides sp. BAV14
DSHI398580 ncbi Dinoroseobacter shibae DFL 125
DRED349161 ncbi Desulfotomaculum reducens MI-15
DRAD243230 ncbi Deinococcus radiodurans R15
DPSY177439 ncbi Desulfotalea psychrophila LSv544
DNOD246195 ncbi Dichelobacter nodosus VCS1703A5
DHAF138119 ncbi Desulfitobacterium hafniense Y515
DGEO319795 ncbi Deinococcus geothermalis DSM 113005
DETH243164 ncbi Dehalococcoides ethenogenes 1954
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G204
DARO159087 ncbi Dechloromonas aromatica RCB5
CVIO243365 ncbi Chromobacterium violaceum ATCC 124725
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA4
CTET212717 ncbi Clostridium tetani E884
CTEP194439 ncbi Chlorobium tepidum TLS5
CSP78 Caulobacter sp.5
CSP501479 Citreicella sp. SE455
CSAL290398 ncbi Chromohalobacter salexigens DSM 30435
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)4
CPSY167879 ncbi Colwellia psychrerythraea 34H5
CPER289380 ncbi Clostridium perfringens SM1015
CPER195103 ncbi Clostridium perfringens ATCC 131245
CPER195102 ncbi Clostridium perfringens 135
CNOV386415 ncbi Clostridium novyi NT5
CKLU431943 ncbi Clostridium kluyveri DSM 5554
CJAP155077 Cellvibrio japonicus5
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29015
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334065
CDIF272563 ncbi Clostridium difficile 6304
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C5
CCHL340177 ncbi Chlorobium chlorochromatii CaD35
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1115
CBUR360115 ncbi Coxiella burnetii RSA 3315
CBUR227377 ncbi Coxiella burnetii RSA 4935
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto5
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6575
CBOT498213 ncbi Clostridium botulinum B1 str. Okra5
CBOT441772 ncbi Clostridium botulinum F str. Langeland5
CBOT441771 ncbi Clostridium botulinum A str. Hall5
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193975
CBOT36826 Clostridium botulinum A5
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80524
CAULO ncbi Caulobacter crescentus CB155
CACE272562 ncbi Clostridium acetobutylicum ATCC 8245
BWEI315730 ncbi Bacillus weihenstephanensis KBAB45
BVIE269482 ncbi Burkholderia vietnamiensis G45
BTRI382640 ncbi Bartonella tribocorum CIP 1054765
BTHU412694 ncbi Bacillus thuringiensis Al Hakam5
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-275
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54825
BTHA271848 ncbi Burkholderia thailandensis E2645
BSUI470137 ncbi Brucella suis ATCC 234455
BSUI204722 ncbi Brucella suis 13305
BSUB ncbi Bacillus subtilis subtilis 1685
BSP376 Bradyrhizobium sp.5
BSP36773 Burkholderia sp.5
BQUI283165 ncbi Bartonella quintana Toulouse5
BPUM315750 ncbi Bacillus pumilus SAFR-0325
BPSE320373 ncbi Burkholderia pseudomallei 6685
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962435
BPET94624 Bordetella petrii5
BPER257313 ncbi Bordetella pertussis Tohama I5
BPAR257311 ncbi Bordetella parapertussis 128225
BOVI236 Brucella ovis5
BMEL359391 ncbi Brucella melitensis biovar Abortus 23085
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M5
BMAL320389 ncbi Burkholderia mallei NCTC 102475
BMAL320388 ncbi Burkholderia mallei SAVP15
BMAL243160 ncbi Burkholderia mallei ATCC 233445
BLIC279010 ncbi Bacillus licheniformis ATCC 145805
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1105
BHEN283166 ncbi Bartonella henselae Houston-15
BHAL272558 ncbi Bacillus halodurans C-1255
BFRA295405 ncbi Bacteroides fragilis YCH464
BFRA272559 ncbi Bacteroides fragilis NCTC 93434
BCLA66692 ncbi Bacillus clausii KSM-K165
BCER572264 ncbi Bacillus cereus 03BB1025
BCER405917 Bacillus cereus W4
BCER315749 ncbi Bacillus cytotoxicus NVH 391-985
BCER288681 ncbi Bacillus cereus E33L5
BCER226900 ncbi Bacillus cereus ATCC 145795
BCEN331272 ncbi Burkholderia cenocepacia HI24245
BCEN331271 ncbi Burkholderia cenocepacia AU 10545
BCAN483179 ncbi Brucella canis ATCC 233655
BBRO257310 ncbi Bordetella bronchiseptica RB505
BBAC360095 ncbi Bartonella bacilliformis KC5835
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1005
BANT592021 ncbi Bacillus anthracis A02485
BANT568206 ncbi Bacillus anthracis CDC 6845
BANT261594 ncbi Bacillus anthracis Ames Ancestor5
BANT260799 ncbi Bacillus anthracis Sterne5
BAMY326423 ncbi Bacillus amyloliquefaciens FZB425
BAMB398577 ncbi Burkholderia ambifaria MC40-65
BAMB339670 ncbi Burkholderia ambifaria AMMD5
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9415
ASP76114 ncbi Aromatoleum aromaticum EbN15
ASP62977 ncbi Acinetobacter sp. ADP14
ASP62928 ncbi Azoarcus sp. BH725
ASP232721 ncbi Acidovorax sp. JS425
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4495
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AORE350688 ncbi Alkaliphilus oremlandii OhILAs4
AMET293826 ncbi Alkaliphilus metalliredigens QYMF4
AMAR329726 ncbi Acaryochloris marina MBIC110174
AHYD196024 Aeromonas hydrophila dhakensis5
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232704
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-15
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C5
ACRY349163 ncbi Acidiphilium cryptum JF-55
ACAU438753 ncbi Azorhizobium caulinodans ORS 5715
ABUT367737 ncbi Arcobacter butzleri RM40184
ABOR393595 ncbi Alcanivorax borkumensis SK25
ABAU360910 ncbi Bordetella avium 197N5
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3455
AAVE397945 ncbi Acidovorax citrulli AAC00-15
AAEO224324 ncbi Aquifex aeolicus VF55


Names of the homologs of the genes in the group in each of these orgs
  EG50003   EG12606   EG11494   EG11318   EG11317   
ZMOB264203 ZMO1279ZMO1278ZMO1277ZMO1222ZMO1223
YPSE349747 YPSIP31758_1579YPSIP31758_1580YPSIP31758_1582YPSIP31758_1578YPSIP31758_1577
YPSE273123 YPTB2470YPTB2469YPTB2467YPTB2471YPTB2472
YPES386656 YPDSF_1847YPDSF_1846YPDSF_1843YPDSF_1848YPDSF_1849
YPES377628 YPN_2029YPN_2028YPN_2025YPN_2030YPN_2031
YPES360102 YPA_1925YPA_1924YPA_1921YPA_1926YPA_1927
YPES349746 YPANGOLA_A3498YPANGOLA_A3497YPANGOLA_A3494YPANGOLA_A3499YPANGOLA_A3500
YPES214092 YPO1600YPO1601YPO1604YPO1599YPO1598
YPES187410 Y1759Y1760Y1763Y1758Y1757
YENT393305 YE1636YE1637YE1639YE1635YE1634
XORY360094 XOOORF_4530XOOORF_4529XOOORF_4527XOOORF_4531XOOORF_4532
XORY342109 XOO0807XOO0808XOO0810XOO0806XOO0805
XORY291331 XOO0882XOO0883XOO0885XOO0881XOO0880
XFAS405440 XFASM12_1644XFASM12_1643XFASM12_1641XFASM12_1645XFASM12_1646
XFAS183190 PD_1502PD_1501PD_1499PD_1503PD_1504
XFAS160492 XF0672XF0673XF0675XF0671XF0670
XCAM487884 XCC-B100_3339XCC-B100_3338XCC-B100_3336XCC-B100_3340XCC-B100_3341
XCAM316273 XCAORF_1219XCAORF_1220XCAORF_1222XCAORF_1218XCAORF_1217
XCAM314565 XC_3226XC_3225XC_3223XC_3227XC_3228
XCAM190485 XCC1019XCC1020XCC1022XCC1018XCC1017
XAXO190486 XAC1128XAC1129XAC1131XAC1127XAC1126
XAUT78245 XAUT_3132XAUT_3133XAUT_3134XAUT_3115XAUT_3116
VVUL216895 VV1_3008VV1_3006VV1_3004VV1_3009VV1_3010
VVUL196600 VV1276VV1277VV1279VV1275VV1274
VPAR223926 VP2053VP2052VP2050VP2054VP2055
VFIS312309 VF1739VF1738VF1736VF1740VF1741
VEIS391735 VEIS_3249VEIS_3248VEIS_1004VEIS_3250VEIS_3251
VCHO345073 VC0395_A1606VC0395_A1605VC0395_A1603VC0395_A1607VC0395_A1608
VCHO VC2020VC2019VC2017VC2021VC2022
TTUR377629 TERTU_1721TERTU_1722TERTU_1724TERTU_1720TERTU_1718
TTHE300852 TTHA0414TTHA0413TTHA1828TTHA0415TTHA0416
TTHE262724 TT_C0046TT_C0045TT_C1477TT_C0047TT_C0048
TTEN273068 TTE1471TTE1470TTE1255TTE1472TTE1473
TSP1755 TETH514_1722TETH514_1721TETH514_1497TETH514_1723TETH514_1724
TROS309801 TRD_1618TRD_A0447TRD_A0870TRD_1621TRD_1622
TPSE340099 TETH39_1286TETH39_1285TETH39_1060TETH39_1287TETH39_1288
TERY203124 TERY_0452TERY_0451TERY_4376TERY_3438
TDEN292415 TBD_1548TBD_1547TBD_1544TBD_1549TBD_1550
TCRU317025 TCR_0713TCR_0714TCR_0717TCR_0712TCR_0711
SWOL335541 SWOL_1848SWOL_0473SWOL_1850SWOL_1851
STYP99287 STM1196STM1197STM1199STM1195STM1194
STHE292459 STH1452STH960STH1992STH1451STH1450
SSP94122 SHEWANA3_2557SHEWANA3_1765SHEWANA3_2558SHEWANA3_2559
SSP644076 SCH4B_4521SCH4B_4523SCH4B_4524SCH4B_4519SCH4B_4518
SSP321332 CYB_1665CYB_1666CYB_2293CYB_2090CYB_2339
SSP321327 CYA_2874CYA_2873CYA_2420CYA_2483CYA_2365
SSP292414 TM1040_1052TM1040_1054TM1040_1055TM1040_1051TM1040_1050
SSON300269 SSO_1114SSO_1115SSO_1117SSO_1113SSO_1112
SSED425104 SSED_2623SSED_2622SSED_2649SSED_2624SSED_2625
SSAP342451 SSP1537SSP1797SSP1538SSP1539
SRUB309807 SRU_2754SRU_2753SRU_2544SRU_0045SRU_0043
SPRO399741 SPRO_1907SPRO_1908SPRO_1910SPRO_1906SPRO_1905
SPEA398579 SPEA_2493SPEA_2492SPEA_1922SPEA_2494SPEA_2495
SONE211586 SO_2775SO_2774SO_2614SO_2776SO_2777
SMEL266834 SMC00573SMC00574SMC00575SMC00572SMC00571
SMED366394 SMED_0746SMED_0747SMED_0748SMED_0745SMED_0744
SLOI323850 SHEW_1604SHEW_1605SHEW_1578SHEW_1603SHEW_1602
SLAC55218 SL1157_2487SL1157_2491SL1157_2492SL1157_2486SL1157_2485
SHIGELLA ACPPFABFYCEGFABGFABD
SHAL458817 SHAL_1778SHAL_1779SHAL_2377SHAL_1777SHAL_1776
SHAE279808 SH1682SH1972SH1683SH1684
SGLO343509 SG1061SG1062SG1064SG1060SG1059
SFUM335543 SFUM_3460SFUM_1375SFUM_3279SFUM_1374SFUM_3285
SFLE373384 SFV_1114SFV_1115SFV_1117SFV_1113SFV_1112
SFLE198214 AAN42717.1AAN42718.1AAN42720.1AAN42716.1AAN42715.1
SEPI176280 SE_0907SE_0678SE_0906SE_0905
SEPI176279 SERP0798SERP0568SERP0797SERP0796
SENT454169 SEHA_C1310SEHA_C1311SEHA_C1313SEHA_C1309SEHA_C1308
SENT321314 SCH_1144SCH_1145SCH_1149SCH_1143SCH_1142
SENT295319 SPA1655SPA1654SPA1652SPA1656SPA1657
SENT220341 STY1235STY1236STY1238STY1234STY1233
SENT209261 T1724T1723T1721T1725T1726
SELO269084 SYC0985_CSYC0984_CSYC0845_CSYC0101_C
SDYS300267 SDY_2056SDY_2055SDY_2053SDY_2057SDY_2058
SDEN318161 SDEN_2292SDEN_2291SDEN_2052SDEN_2293SDEN_2294
SDEG203122 SDE_1630SDE_1631SDE_1633SDE_1629SDE_1628
SBOY300268 SBO_1969SBO_1968SBO_1966SBO_1970SBO_1971
SBAL402882 SHEW185_1717SHEW185_1718SHEW185_2453SHEW185_1716SHEW185_1715
SBAL399599 SBAL195_1760SBAL195_1761SBAL195_2573SBAL195_1759SBAL195_1758
SAUR93062 SACOL1247SACOL0988SACOL1245SACOL1244
SAUR93061 SAOUHSC_01201SAOUHSC_00921SAOUHSC_01199SAOUHSC_01198
SAUR426430 NWMN_1142NWMN_0854NWMN_1141NWMN_1140
SAUR418127 SAHV_1222SAHV_0979SAHV_1221SAHV_1220
SAUR367830 SAUSA300_1125SAUSA300_0886SAUSA300_1124SAUSA300_1123
SAUR359787 SAURJH1_1316SAURJH1_1002SAURJH1_1315SAURJH1_1314
SAUR359786 SAURJH9_1291SAURJH9_0983SAURJH9_1290SAURJH9_1289
SAUR282459 SAS1166SAS0854SAS1165SAS1164
SAUR282458 SAR1208SAR0947SAR1207SAR1206
SAUR273036 SAB1096SAB0849SAB1095SAB1094
SAUR196620 MW1115MW0866MW1114MW1113
SAUR158879 SA1075SA0843SA1074SA1073
SAUR158878 SAV1232SAV0984SAV1231SAV1230
SALA317655 SALA_0280SALA_0281SALA_0448SALA_1896SALA_1897
RSPH349102 RSPH17025_1070RSPH17025_1071RSPH17025_1072RSPH17025_1069RSPH17025_1221
RSPH349101 RSPH17029_1125RSPH17029_1126RSPH17029_1127RSPH17029_1124RSPH17029_1340
RSPH272943 RSP_2463RSP_2464RSP_2465RSP_2461RSP_2682
RSP357808 ROSERS_0984ROSERS_4603ROSERS_0987ROSERS_3469
RSOL267608 RSC1053RSC1054RSC1783RSC1052RSC1051
RRUB269796 RRU_A0417RRU_A0418RRU_A0419RRU_A0416RRU_A0415
RRIC452659 RRIOWA_1393RRIOWA_1394RRIOWA_0527RRIOWA_1392RRIOWA_1330
RRIC392021 A1G_06505A1G_06510A1G_02500A1G_06495A1G_06190
RPRO272947 RP764RP322RP762RP735
RPOM246200 SPO_2274SPO_2271SPO_2270SPO_2275SPO_2276
RPAL316058 RPB_2468RPB_2469RPB_2470RPB_2467RPB_2466
RPAL316057 RPD_2978RPD_2977RPD_2976RPD_2979RPD_2983
RPAL316056 RPC_2301RPC_2302RPC_2303RPC_2300RPC_2298
RPAL316055 RPE_3305RPE_3304RPE_3303RPE_3306RPE_3307
RPAL258594 RPA3073RPA3072RPA3071RPA3074RPA3075
RMET266264 RMET_2427RMET_2426RMET_1829RMET_2428RMET_2429
RLEG216596 RL1559RL1560RL1561RL1558RL1557
RFER338969 RFER_1733RFER_1734RFER_2254RFER_1732RFER_1731
REUT381666 H16_A2566H16_A2565H16_A1568H16_A2567H16_A2568
REUT264198 REUT_A2262REUT_A2261REUT_A1433REUT_A2263REUT_A2264
RETL347834 RHE_CH01444RHE_CH01445RHE_CH01446RHE_CH01443RHE_CH01442
RDEN375451 RD1_3038RD1_3036RD1_3035RD1_3039RD1_3040
RCON272944 RC1186RC0442RC1183RC1116
RCAS383372 RCAS_3256RCAS_0379RCAS_3414RCAS_3253RCAS_1491
RAKA293614 A1C_05940A1C_05945A1C_02390A1C_05935A1C_05845
PSYR223283 PSPTO_3831PSPTO_3830PSPTO_3828PSPTO_3832PSPTO_3833
PSYR205918 PSYR_1648PSYR_1649PSYR_1651PSYR_1647PSYR_1646
PSTU379731 PST_2621PST_2620PST_2618PST_2622PST_2623
PSP56811 PSYCPRWF_0458PSYCPRWF_0208PSYCPRWF_0125PSYCPRWF_0457PSYCPRWF_0456
PSP312153 PNUC_0401PNUC_0402PNUC_0967PNUC_0400PNUC_0399
PSP296591 BPRO_3646BPRO_3645BPRO_2520BPRO_3647BPRO_3648
PRUM264731 GFRORF2562GFRORF2561GFRORF1372GFRORF0675
PPUT76869 PPUTGB1_1491PPUTGB1_1492PPUTGB1_1494PPUTGB1_1490PPUTGB1_1489
PPUT351746 PPUT_3799PPUT_3798PPUT_3796PPUT_3800PPUT_3801
PPUT160488 PP_1915PP_1916PP_1918PP_1914PP_1913
PPRO298386 PBPRA1196PBPRA1197PBPRA1199PBPRA1195PBPRA1194
PNAP365044 PNAP_3071PNAP_3070PNAP_1947PNAP_3072PNAP_3073
PMUL272843 PM1917PM1672PM1916PM1915
PMEN399739 PMEN_1629PMEN_1630PMEN_1632PMEN_1628PMEN_1627
PLUT319225 PLUT_0130PLUT_0129PLUT_2122PLUT_0131PLUT_0132
PLUM243265 PLU2832PLU2831PLU2829PLU2833PLU2834
PING357804 PING_1090PING_1091PING_1093PING_1089PING_1088
PHAL326442 PSHAA1807PSHAA1806PSHAA1804PSHAA1808PSHAA1809
PGIN242619 PG_1765PG_1764PG_1694PG_1239PG_0138
PFLU220664 PFL_1797PFL_1798PFL_1800PFL_1796PFL_1795
PFLU216595 PFLU4704PFLU4703PFLU4701PFLU4705PFLU4706
PFLU205922 PFL_4156PFL_4155PFL_4153PFL_4157PFL_4158
PENT384676 PSEEN1620PSEEN1621PSEEN1623PSEEN1618PSEEN1617
PCRY335284 PCRYO_0517PCRYO_2271PCRYO_0154PCRYO_0516PCRYO_0515
PCAR338963 PCAR_1439PCAR_1440PCAR_0650PCAR_1438PCAR_1437
PATL342610 PATL_2121PATL_2120PATL_2118PATL_2122PATL_2123
PARC259536 PSYC_0522PSYC_1972PSYC_0144PSYC_0521PSYC_0520
PAER208964 PA2966PA2965PA2963PA2967PA2968
PAER208963 PA14_25670PA14_25690PA14_25730PA14_25660PA14_25650
OIHE221109 OB1525OB1205OB2005OB1524OB1523
OCAR504832 OCAR_6367OCAR_6366OCAR_6365OCAR_6369OCAR_6370
OANT439375 OANT_0572OANT_0573OANT_0574OANT_0571OANT_0570
NWIN323098 NWI_1687NWI_1686NWI_1685NWI_1688NWI_1690
NSP387092 NIS_0314NIS_0315NIS_0833NIS_1211
NOCE323261 NOC_1664NOC_1663NOC_1661NOC_1665NOC_1666
NMUL323848 NMUL_A1075NMUL_A1076NMUL_A1077NMUL_A1074NMUL_A1073
NMEN374833 NMCC_1925NMCC_1926NMCC_0622NMCC_0298NMCC_0301
NMEN272831 NMC0217NMC0216NMC0618NMC0302NMC0305
NMEN122587 NMA0043NMA0044NMA0868NMA0533NMA0536
NMEN122586 NMB_0220NMB_0219NMB_0669NMB_1921NMB_1918
NHAM323097 NHAM_2352NHAM_2351NHAM_2350NHAM_2353NHAM_2354
NGON242231 NGO1762NGO1763NGO0238NGO2163NGO2166
NEUT335283 NEUT_0467NEUT_0466NEUT_0465NEUT_0468NEUT_0469
NEUR228410 NE1649NE1650NE1651NE1648NE1647
NARO279238 SARO_1339SARO_1340SARO_1341SARO_1428SARO_1427
MXAN246197 MXAN_4769MXAN_4768MXAN_4770MXAN_4771
MTHE264732 MOTH_0949MOTH_0950MOTH_1637MOTH_0948MOTH_0947
MSUC221988 MS1875MS0568MS1874MS1873
MSP409 M446_3198M446_3197M446_3195M446_3199M446_3200
MSP400668 MMWYL1_2133MMWYL1_2134MMWYL1_2268MMWYL1_2132MMWYL1_2131
MSP266779 MESO_1767MESO_1766MESO_1765MESO_1768MESO_1769
MPET420662 MPE_A0639MPE_A0640MPE_A1861MPE_A0638MPE_A0637
MMAR394221 MMAR10_1216MMAR10_1217MMAR10_1218MMAR10_1215MMAR10_1213
MMAG342108 AMB2107AMB2108AMB2109AMB2106AMB2105
MLOT266835 MSR7851MLR7852MLR7854MLR7850MLR7849
MFLA265072 MFLA_1504MFLA_1503MFLA_1501MFLA_1505MFLA_1506
MEXT419610 MEXT_0558MEXT_0559MEXT_0560MEXT_0557MEXT_0556
MCAP243233 MCA_2000MCA_1999MCA_1997MCA_2001MCA_2002
MAQU351348 MAQU_1866MAQU_1865MAQU_1863MAQU_1867MAQU_1868
LWEL386043 LWE1825LWE2218LWE1512LWE1826LWE1827
LSPH444177 BSPH_1520BSPH_1214BSPH_3867BSPH_1519BSPH_1517
LPNE400673 LPC_0812LPC_0813LPC_0814LPC_0811LPC_0810
LPNE297246 LPP1351LPP1352LPP1353LPP1350LPP1349
LPNE297245 LPL1347LPL1348LPL1349LPL1346LPL1345
LPNE272624 LPG1396LPG1397LPG1398LPG1395LPG1394
LMON265669 LMOF2365_1834LMOF2365_2234LMOF2365_1518LMOF2365_1835LMOF2365_1836
LMON169963 LMO1806LMO2201LMO1499LMO1807LMO1808
LINN272626 LIN1920LIN2304LIN1534LIN1921LIN1922
LCHO395495 LCHO_0608LCHO_0607LCHO_1877LCHO_0609LCHO_0610
KPNE272620 GKPORF_B0005GKPORF_B0006GKPORF_B0008GKPORF_B0004GKPORF_B0003
JSP375286 MMA_1359MMA_1360MMA_1987MMA_1358MMA_1357
JSP290400 JANN_1627JANN_1629JANN_1630JANN_1626JANN_1624
ILOI283942 IL1339IL1337IL1340IL1341
HSOM228400 HSM_0035HSM_0513HSM_0034HSM_0033
HSOM205914 HS_0168HS_1488HS_0167HS_0166
HNEP81032 HNE_2157HNE_2156HNE_2155HNE_2158HNE_2160
HMOD498761 HM1_2166HM1_2168HM1_0536HM1_2165HM1_2164
HINF71421 HI_0154HI_0457HI_0155HI_0156
HINF374930 CGSHIEE_02515CGSHIEE_00705CGSHIEE_02510CGSHIEE_02505
HINF281310 NTHI0243NTHI0587NTHI0244NTHI0245
HHAL349124 HHAL_1232HHAL_0003HHAL_0005HHAL_1233HHAL_1234
HDUC233412 HD_1931HD_1932HD_0708HD_0707
HCHE349521 HCH_02145HCH_02147HCH_02144HCH_02143
HAUR316274 HAUR_0752HAUR_4467HAUR_0748HAUR_0745
HARS204773 HEAR2074HEAR2073HEAR1395HEAR2075HEAR2076
GVIO251221 GLR2311GLL4014GLL1130GLR3506GLL2145
GURA351605 GURA_1878GURA_1879GURA_3618GURA_1877GURA_1876
GTHE420246 GTNG_1044GTNG_0685GTNG_2485GTNG_1043GTNG_1042
GSUL243231 GSU_1604GSU_1605GSU_0508GSU_1603GSU_1602
GOXY290633 GOX2041GOX2042GOX2043GOX2040GOX2039
GMET269799 GMET_1602GMET_1603GMET_3021GMET_1601GMET_1600
GKAU235909 GK1191GK0805GK2552GK1190GK1189
GFOR411154 GFO_3382GFO_3383GFO_0626GFO_1767GFO_0276
GBET391165 GBCGDNIH1_2209GBCGDNIH1_2208GBCGDNIH1_2207GBCGDNIH1_2211GBCGDNIH1_2212
FTUL458234 FTA_1201FTA_1200FTA_1202FTA_1203
FTUL418136 FTW_0515FTW_0514FTW_0516FTW_0517
FTUL401614 FTN_1340FTN_1341FTN_1339FTN_1338
FTUL393115 FTF1376FTF1377FTF1375FTF1374
FTUL393011 FTH_1113FTH_1112FTH_1114FTH_1115
FTUL351581 FTL_1138FTL_1137FTL_1139FTL_1140
FRANT ACPPFABFFABGFT.1376
FPHI484022 FPHI_1348FPHI_1347FPHI_1349FPHI_1350
FNUC190304 FN0150FN0151FN1976FN0494FN0149
FJOH376686 FJOH_1137FJOH_1138FJOH_0016FJOH_2889FJOH_1730
ESP42895 ENT638_1609ENT638_1610ENT638_1612ENT638_1608ENT638_1607
ELIT314225 ELI_03985ELI_03990ELI_03995ELI_07335ELI_07340
EFER585054 EFER_1833EFER_1832EFER_1830EFER_1834EFER_1835
ECOO157 ACPPFABFYCEGFABGFABD
ECOL83334 ECS1472ECS1473ECS1475ECS1471ECS1470
ECOL585397 ECED1_1237ECED1_1238ECED1_1240ECED1_1236ECED1_1235
ECOL585057 ECIAI39_2067ECIAI39_2066ECIAI39_2064ECIAI39_2068ECIAI39_2069
ECOL585056 ECUMN_1269ECUMN_1270ECUMN_1274ECUMN_1268ECUMN_1267
ECOL585055 EC55989_1206EC55989_1207EC55989_1209EC55989_1205EC55989_1204
ECOL585035 ECS88_1108ECS88_1109ECS88_1111ECS88_1107ECS88_1106
ECOL585034 ECIAI1_1129ECIAI1_1130ECIAI1_1132ECIAI1_1128ECIAI1_1127
ECOL481805 ECOLC_2507ECOLC_2506ECOLC_2504ECOLC_2508ECOLC_2509
ECOL469008 ECBD_2507ECBD_2506ECBD_2504ECBD_2508ECBD_2509
ECOL439855 ECSMS35_2033ECSMS35_2032ECSMS35_2030ECSMS35_2034ECSMS35_2035
ECOL413997 ECB_01090ECB_01091ECB_01093ECB_01089ECB_01088
ECOL409438 ECSE_1158ECSE_1159ECSE_1161ECSE_1157ECSE_1156
ECOL405955 APECO1_176APECO1_178APECO1_174APECO1_173
ECOL364106 UTI89_C1220UTI89_C1221UTI89_C1224UTI89_C1218UTI89_C1217
ECOL362663 ECP_1086ECP_1087ECP_1089ECP_1085ECP_1084
ECOL331111 ECE24377A_1215ECE24377A_1216ECE24377A_1218ECE24377A_1214ECE24377A_1213
ECOL316407 ECK1080:JW1080:B1094ECK1081:JW1081:B1095ECK1083:JW1083:B1097ECK1079:JW1079:B1093ECK1078:JW1078:B1092
ECOL199310 C1364C1365C1369C1361
ECAR218491 ECA1798ECA1799ECA1801ECA1797ECA1796
DVUL882 DVU_1205DVU_1204DVU_3069DVU_1206
DSP255470 CBDBA1208CBDBA921CBDBA1205CBDBA1204
DSP216389 DEHABAV1_1090DEHABAV1_0854DEHABAV1_1088DEHABAV1_1087
DSHI398580 DSHI_2181DSHI_2180DSHI_2179DSHI_2182DSHI_2183
DRED349161 DRED_2071DRED_2070DRED_0900DRED_2072DRED_2073
DRAD243230 DR_1942DR_1941DR_2552DR_1943DR_1945
DPSY177439 DP2789DP2788DP2920DP2790
DNOD246195 DNO_1210DNO_1211DNO_1212DNO_1209DNO_1208
DHAF138119 DSY2659DSY2657DSY2415DSY2660DSY2661
DGEO319795 DGEO_0436DGEO_0437DGEO_0417DGEO_0435DGEO_0434
DETH243164 DET_1279DET_0963DET_1277DET_1276
DDES207559 DDE_2430DDE_2431DDE_0315DDE_2429
DARO159087 DARO_2018DARO_2019DARO_2198DARO_2017DARO_2016
CVIO243365 CV_3413CV_3412CV_3724CV_3414CV_3415
CVES412965 COSY_0520COSY_0521COSY_0822COSY_0823
CTET212717 CTC_00131CTC_01061CTC_00130CTC_00129
CTEP194439 CT_2117CT_2118CT_2223CT_2116CT_2115
CSP78 CAUL_2519CAUL_2520CAUL_2521CAUL_2518CAUL_2517
CSP501479 CSE45_1771CSE45_1339CSE45_1340CSE45_1769CSE45_1768
CSAL290398 CSAL_1602CSAL_1603CSAL_1605CSAL_1601CSAL_1600
CRUT413404 RMAG_0565RMAG_0566RMAG_0916RMAG_0917
CPSY167879 CPS_2298CPS_2299CPS_2301CPS_2297CPS_2296
CPER289380 CPR_1691CPR_1139CPR_1743CPR_1138CPR_1137
CPER195103 CPF_1973CPF_1327CPF_2026CPF_1326CPF_1325
CPER195102 CPE1719CPE1071CPE1773CPE1070CPE1069
CNOV386415 NT01CX_2220NT01CX_0926NT01CX_2272NT01CX_0925NT01CX_0924
CKLU431943 CKL_1395CKL_0107CKL_1331CKL_1732
CJAP155077 CJA_1677CJA_1678CJA_1680CJA_1676CJA_1675
CHYD246194 CHY_1446CHY_1445CHY_0547CHY_1447CHY_1448
CHUT269798 CHU_1398CHU_1397CHU_1072CHU_1085CHU_2469
CDIF272563 CD1184CD1226CD1182CD1181
CDES477974 DAUD_0643DAUD_0644DAUD_0918DAUD_0642DAUD_0641
CCHL340177 CAG_1661CAG_1660CAG_0045CAG_1662CAG_1663
CBUR434922 COXBU7E912_1580COXBU7E912_1579COXBU7E912_1578COXBU7E912_1581COXBU7E912_1582
CBUR360115 COXBURSA331_A0605COXBURSA331_A0606COXBURSA331_A0607COXBURSA331_A0604COXBURSA331_A0603
CBUR227377 CBU_0496CBU_0497CBU_0498CBU_0495CBU_0494
CBOT536232 CLM_2749CLM_4091CLM_2864CLM_4092CLM_4093
CBOT515621 CLJ_B2680CLJ_B3928CLJ_B2787CLJ_B3929CLJ_B3930
CBOT498213 CLD_2185CLD_0887CLD_2008CLD_0886CLD_0885
CBOT441772 CLI_2512CLI_3824CLI_2620CLI_3825CLI_3826
CBOT441771 CLC_2304CLC_3577CLC_2428CLC_3578CLC_3579
CBOT441770 CLB_2320CLB_3679CLB_2498CLB_3680CLB_3681
CBOT36826 CBO2455CBO3599CBO2557CBO3600CBO3601
CBEI290402 CBEI_1072CBEI_1111CBEI_1071CBEI_0257
CAULO CC1677CC1678CC1679CC1675CC1674
CACE272562 CAC1747CAC3573CAC1685CAC3574CAC3575
BWEI315730 BCERKBAB4_3673BCERKBAB4_1083BCERKBAB4_4231BCERKBAB4_3674BCERKBAB4_3675
BVIE269482 BCEP1808_1043BCEP1808_1044BCEP1808_1818BCEP1808_1042BCEP1808_1041
BTRI382640 BT_0818BT_0819BT_0820BT_0817BT_0816
BTHU412694 BALH_3481BALH_1037BALH_3969BALH_3482BALH_3483
BTHU281309 BT9727_3591BT9727_1078BT9727_4117BT9727_3592BT9727_3593
BTHE226186 BT_3359BT_3358BT_0431BT_3771BT_0789
BTHA271848 BTH_I1720BTH_I1721BTH_I2153BTH_I1719BTH_I1718
BSUI470137 BSUIS_A0485BSUIS_A0487BSUIS_A0488BSUIS_A0484BSUIS_A0483
BSUI204722 BR_0459BR_0461BR_0462BR_0458BR_0457
BSUB BSU15920BSU11340BSU27370BSU15910BSU15900
BSP376 BRADO3313BRADO3314BRADO3315BRADO3311BRADO3310
BSP36773 BCEP18194_A4236BCEP18194_A4237BCEP18194_A5194BCEP18194_A4235BCEP18194_A4234
BQUI283165 BQ04540BQ04550BQ04560BQ04530BQ04520
BPUM315750 BPUM_1491BPUM_1058BPUM_2373BPUM_1490BPUM_1489
BPSE320373 BURPS668_2789BURPS668_2788BURPS668_2282BURPS668_2790BURPS668_2791
BPSE320372 BURPS1710B_A3152BURPS1710B_A3151BURPS1710B_A3153BURPS1710B_A3154
BPSE272560 BPSL2439BPSL2438BPSL1435BPSL2440BPSL2441
BPET94624 BPET1756BPET1757BPET2505BPET1755BPET1754
BPER257313 BP2440BP2439BP1846BP2441BP2442
BPAR257311 BPP3304BPP3303BPP1558BPP3305BPP3306
BOVI236 GBOORF0488GBOORF0489GBOORF0490GBOORF0487GBOORF0486
BMEL359391 BAB1_0484BAB1_0486BAB1_0487BAB1_0483BAB1_0482
BMEL224914 BMEI1475BMEI1473BMEI1471BMEI1477BMEI1478
BMAL320389 BMA10247_1799BMA10247_1798BMA10247_1190BMA10247_1800BMA10247_1801
BMAL320388 BMASAVP1_A2476BMASAVP1_A2475BMASAVP1_A1917BMASAVP1_A2477BMASAVP1_A2478
BMAL243160 BMA_0533BMA_0534BMA_1426BMA_0532BMA_0531
BLIC279010 BL02316BL03314BL02029BL02315BL02314
BJAP224911 BSR4084BLR4085BLR4086BLR4083BLR4082
BHEN283166 BH05360BH05370BH05380BH05350BH05340
BHAL272558 BH2490BH2882BH1271BH2491BH2492
BFRA295405 BF0220BF0219BF1696BF2258
BFRA272559 BF0179BF0178BF1703BF2352
BCLA66692 ABC2300ABC2546ABC1596ABC2301ABC2302
BCER572264 BCA_3950BCA_1218BCA_4496BCA_3951BCA_3952
BCER405917 BCE_3892BCE_1294BCE_3893BCE_3894
BCER315749 BCER98_2502BCER98_0891BCER98_3097BCER98_2503BCER98_2504
BCER288681 BCE33L3609BCE33L1072BCE33L4128BCE33L3610BCE33L3611
BCER226900 BC_3848BC_1174BC_4379BC_3849BC_3850
BCEN331272 BCEN2424_1124BCEN2424_1125BCEN2424_1894BCEN2424_1123BCEN2424_1122
BCEN331271 BCEN_0644BCEN_0645BCEN_6185BCEN_0643BCEN_0642
BCAN483179 BCAN_A0464BCAN_A0466BCAN_A0467BCAN_A0463BCAN_A0462
BBRO257310 BB3755BB3754BB2636BB3756BB3757
BBAC360095 BARBAKC583_0498BARBAKC583_0499BARBAKC583_0501BARBAKC583_0497BARBAKC583_0496
BBAC264462 BD2011BD2010BD0132BD2012BD2013
BANT592021 BAA_4012BAA_1262BAA_4632BAA_4013BAA_4014
BANT568206 BAMEG_0643BAMEG_3402BAMEG_4649BAMEG_0642BAMEG_0641
BANT261594 GBAA3988GBAA1185GBAA4612GBAA3989GBAA3990
BANT260799 BAS3701BAS1096BAS4280BAS3702BAS3703
BAMY326423 RBAM_015750RBAM_011340RBAM_024470RBAM_015740RBAM_015730
BAMB398577 BAMMC406_1004BAMMC406_1005BAMMC406_1803BAMMC406_1003BAMMC406_1002
BAMB339670 BAMB_1000BAMB_1001BAMB_1831BAMB_0999BAMB_0998
BABO262698 BRUAB1_0481BRUAB1_0483BRUAB1_0484BRUAB1_0480BRUAB1_0479
ASP76114 EBD12EBA5459EBA5414EBA5457EBA5456
ASP62977 ACIAD0872ACIAD2589ACIAD0871ACIAD0870
ASP62928 AZO1626AZO1627AZO1594AZO1625AZO1624
ASP232721 AJS_3277AJS_3276AJS_1716AJS_3278AJS_3279
ASAL382245 ASA_2053ASA_2052ASA_2050ASA_2054ASA_2055
APLE434271 APJL_1855APJL_1854APJL_2040APJL_2041
APLE416269 APL_1819APL_1818APL_1992APL_1993
AORE350688 CLOS_1457CLOS_0057CLOS_1455CLOS_1454
AMET293826 AMET_2753AMET_0046AMET_2755AMET_2756
AMAR329726 AM1_5523AM1_5522AM1_0034AM1_5632
AHYD196024 AHA_2252AHA_2253AHA_2255AHA_2251AHA_2250
AFER243159 AFE_1178AFE_1177AFE_1179AFE_1180
AEHR187272 MLG_1420MLG_1419MLG_1417MLG_1421MLG_1422
ADEH290397 ADEH_2747ADEH_2746ADEH_1231ADEH_2748ADEH_2749
ACRY349163 ACRY_1527ACRY_1528ACRY_1529ACRY_1526ACRY_1525
ACAU438753 AZC_4314AZC_4315AZC_4316AZC_4313AZC_4312
ABUT367737 ABU_2057ABU_2056ABU_1313ABU_1586
ABOR393595 ABO_1070ABO_1071ABO_1073ABO_1069ABO_1068
ABAU360910 BAV1122BAV1123BAV1763BAV1121BAV1120
ABAC204669 ACID345_4505ACID345_4506ACID345_0557ACID345_0265ACID345_4573
AAVE397945 AAVE_1186AAVE_1187AAVE_3413AAVE_1185AAVE_1184
AAEO224324 AQ_1717AAQ_1717AQ_775AQ_1716AQ_892


Organism features enriched in list (features available for 344 out of the 365 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.00773291517
Arrangment:Pairs 6.686e-686112
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00282391111
Endospores:No 6.222e-1974211
Endospores:Yes 0.00066574253
GC_Content_Range4:0-40 8.873e-1189213
GC_Content_Range4:40-60 0.0001829152224
GC_Content_Range4:60-100 0.0002175103145
GC_Content_Range7:0-30 0.00019781647
GC_Content_Range7:30-40 1.666e-673166
GC_Content_Range7:50-60 4.905e-683107
GC_Content_Range7:60-70 1.397e-6102134
GC_Content_Range7:70-100 0.0007905111
Genome_Size_Range5:0-2 1.563e-3527155
Genome_Size_Range5:4-6 7.814e-21158184
Genome_Size_Range5:6-10 0.00955083547
Genome_Size_Range9:0-1 6.109e-10127
Genome_Size_Range9:1-2 4.006e-2426128
Genome_Size_Range9:4-5 5.024e-98196
Genome_Size_Range9:5-6 3.201e-107788
Genome_Size_Range9:6-8 0.00151123138
Gram_Stain:Gram_Neg 8.080e-21251333
Gram_Stain:Gram_Pos 7.212e-666150
Habitat:Host-associated 0.0006087104206
Habitat:Multiple 0.0001641124178
Habitat:Specialized 0.00651872353
Habitat:Terrestrial 0.00178022631
Motility:No 1.590e-1056151
Motility:Yes 9.801e-11195267
Optimal_temp.:25-30 0.00003601919
Optimal_temp.:30-37 0.00006231818
Optimal_temp.:35-37 0.00095591313
Optimal_temp.:37 0.001168349106
Oxygen_Req:Aerobic 0.0030980123185
Oxygen_Req:Anaerobic 0.007087650102
Oxygen_Req:Facultative 0.0010115135201
Pathogenic_in:Animal 0.00274904966
Salinity:Non-halophilic 0.006310252106
Shape:Coccobacillus 0.00282391111
Shape:Coccus 0.00001633182
Shape:Irregular_coccus 0.0000592217
Shape:Rod 1.206e-24264347
Shape:Sphere 0.0001011319
Shape:Spiral 4.006e-7634
Temp._range:Hyperthermophilic 4.442e-6323
Temp._range:Mesophilic 0.0090058289473
Temp._range:Psychrophilic 0.008301099



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 153
Effective number of orgs (counting one per cluster within 468 clusters): 135

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WPIP955 Wolbachia pipientis1
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TLET416591 ncbi Thermotoga lettingae TMO1
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX1
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
SSOL273057 ncbi Sulfolobus solfataricus P20
SPNE1313 Streptococcus pneumoniae1
SMAR399550 ncbi Staphylothermus marinus F10
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23380
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SARE391037 ncbi Salinispora arenicola CNS-2050
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RSP101510 ncbi Rhodococcus jostii RHA10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RALB246199 Ruminococcus albus 81
PTOR263820 ncbi Picrophilus torridus DSM 97900
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PMOB403833 ncbi Petrotoga mobilis SJ950
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong1
NSP35761 Nocardioides sp.1
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NFAR247156 ncbi Nocardia farcinica IFM 101520
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba1
FSP106370 ncbi Frankia sp. CcI31
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FMAG334413 ncbi Finegoldia magna ATCC 293280
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS1
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CCUR360105 ncbi Campylobacter curvus 525.921
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1350
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi1
BBUR224326 ncbi Borrelia burgdorferi B311
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BAFZ390236 ncbi Borrelia afzelii PKo1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.0
APHA212042 ncbi Anaplasma phagocytophilum HZ1
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG11
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AAUR290340 ncbi Arthrobacter aurescens TC10


Names of the homologs of the genes in the group in each of these orgs
  EG50003   EG12606   EG11494   EG11318   EG11317   
WPIP955 WD_1194
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496 TW0373
TWHI203267 TW374
TVOL273116
TPEN368408
TPAL243276 TP_0491
TLET416591 TLET_1787
TKOD69014
TFUS269800 TFU_2068
TDEN243275 TDE_1543
TACI273075
STRO369723
STOK273063
SSOL273057
SPNE1313 SPJ_0406
SMAR399550
SERY405948
SAVE227882 SAV6462
SARE391037
SACI330779
RSP101510
RSAL288705 RSAL33209_1977
RALB246199 GRAORF_1076
PTOR263820
PPEN278197 PEPE_0841
PMOB403833
PISL384616
PHOR70601
PFUR186497
PAST100379
PARS340102
PAER178306
PACN267747 PPA1180
PABY272844
OTSU357244 OTBS_0383
NSP35761 NOCA_2571
NSEN222891
NPHA348780
NFAR247156
MVAN350058
MTUB419947
MTUB336982
MTHE349307
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP189918
MSP164757
MSP164756
MSME246196 MSMEG_3150
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAEO419665
MACE188937
MABS561007
LXYL281090 LXX10930
LSAK314315
LREU557436
LPLA220668 LP_1561
LMES203120
LJOH257314 LJ_1623
LHEL405566
LGAS324831 LGAS_1390
LDEL390333
LDEL321956
LCAS321967
LBRE387344 LVIS_1008
LACI272621
KRAD266940 KRAD_3030
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963 JHP0505
HPYL357544 HPAG1_0536
HPY HP0558
HMUK485914
HMAR272569
HBUT415426
HACI382638 HAC_0779
FSP106370 FRANCCI3_3212
FNOD381764 FNOD_0616
FMAG334413
ERUM302409 ERGA_CDS_02130
ECHA205920 ECH_0882
CSUL444179 SMGWSS_016
CPRO264201 PC1718
CPNE182082 CPB0304
CPNE138677 CPJ0295
CPNE115713 CPN0295
CPNE115711 CP_0463
CMIC443906 CMM_1800
CMIC31964 CMS0731
CMET456442
CMAQ397948
CKOR374847
CJEI306537
CHOM360107 CHAB381_0229
CGLU196627
CEFF196164
CDIP257309 DIP1348
CCUR360105 CCV52592_1911
BXEN266265
BTUR314724
BLON206672
BHER314723
BGAR290434 BG0732
BBUR224326 BB_0709
BAPH372461 BCC_217
BAFZ390236 BAPKO_0754
AYEL322098
AURANTIMONAS
ASP1667
APHA212042 APH_0930
APER272557
ANAE240017 ANA_0822
ALAI441768
AFUL224325
AAUR290340


Organism features enriched in list (features available for 143 out of the 153 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00024391092
Arrangment:Pairs 0.000281014112
Arrangment:Singles 0.000207988286
Endospores:No 3.344e-1693211
Endospores:Yes 0.0072566653
GC_Content_Range7:0-30 0.00029842247
GC_Content_Range7:50-60 0.003375316107
GC_Content_Range7:70-100 0.0053437711
Genome_Size_Range5:0-2 3.788e-1474155
Genome_Size_Range5:4-6 3.041e-820184
Genome_Size_Range9:0-1 3.355e-82027
Genome_Size_Range9:1-2 2.542e-754128
Genome_Size_Range9:4-5 0.00010741096
Genome_Size_Range9:5-6 0.00053621088
Gram_Stain:Gram_Neg 1.301e-1738333
Gram_Stain:Gram_Pos 0.001457150150
Habitat:Multiple 0.001263730178
Habitat:Specialized 0.00079062353
Motility:No 9.514e-657151
Motility:Yes 0.000241848267
Optimal_temp.:- 2.812e-640257
Optimal_temp.:37 0.000677639106
Optimal_temp.:85 0.003505744
Oxygen_Req:Anaerobic 0.000120540102
Oxygen_Req:Facultative 0.003477337201
Pathogenic_in:Animal 0.0017212766
Pathogenic_in:Human 0.003862040213
Pathogenic_in:No 0.003732868226
Shape:Irregular_coccus 3.200e-81517
Shape:Rod 1.300e-661347
Shape:Sphere 3.997e-81619
Temp._range:Hyperthermophilic 4.227e-81823
Temp._range:Mesophilic 0.0028556105473



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 3
Effective number of orgs (counting one per cluster within 468 clusters): 2

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
RAKA293614 ncbi Rickettsia akari Hartford 0.00208294165
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith 0.00208294165
RRIC452659 ncbi Rickettsia rickettsii Iowa 0.00229214245


Names of the homologs of the genes in the group in each of these orgs
  EG50003   EG12606   EG11494   EG11318   EG11317   
RAKA293614 A1C_05940A1C_05945A1C_02390A1C_05935A1C_05845
RRIC392021 A1G_06505A1G_06510A1G_02500A1G_06495A1G_06190
RRIC452659 RRIOWA_1393RRIOWA_1394RRIOWA_0527RRIOWA_1392RRIOWA_1330


Organism features enriched in list (features available for 3 out of the 3 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Rickettsialpox 0.005145811
Disease:Rocky_Mountain_Spotted_Fever 0.000053023



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY-5918 (heme biosynthesis I)2722440.5561
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2862500.5391
GLYCOCAT-PWY (glycogen degradation I)2462240.5325
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3002570.5298
PWY-1269 (CMP-KDO biosynthesis I)3252700.5192
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951850.4972
ILEUSYN-PWY (isoleucine biosynthesis I (from threonine))5053540.4835
NAGLIPASYN-PWY (lipid IVA biosynthesis)3482770.4798
TYRFUMCAT-PWY (tyrosine degradation I)1841740.4729
PWY-5084 (2-ketoglutarate dehydrogenase complex)3262630.4698
ARO-PWY (chorismate biosynthesis I)5103540.4669
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181960.4665
CENTFERM-PWY (acetyl-CoA fermentation to butyrate I)2081890.4639
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491480.4637
BRANCHED-CHAIN-AA-SYN-PWY (superpathway of leucine, valine, and isoleucine biosynthesis)4583310.4628
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2252000.4625
PANTO-PWY (pantothenate biosynthesis I)4723370.4598
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4223130.4584
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831710.4564
THISYN-PWY (thiamin biosynthesis I)5023490.4522
PWY-5386 (methylglyoxal degradation I)3052480.4518
PWY-5669 (phosphatidylethanolamine biosynthesis I)4163090.4516
PWY-4041 (γ-glutamyl cycle)2792320.4492
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2912390.4475
FAO-PWY (fatty acid β-oxidation I)4573270.4368
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2962400.4345
PWY0-501 (lipoate biosynthesis and incorporation I)3852900.4322
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3982960.4262
PPGPPMET-PWY (ppGpp biosynthesis)4843380.4261
PWY-5340 (sulfate activation for sulfonation)3852890.4255
PWY-5966 (fatty acid biosynthesis initiation II)4913410.4253
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911720.4248
PWY-5028 (histidine degradation II)1301290.4237
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2552130.4215
FASYN-ELONG-PWY (fatty acid elongation -- saturated)5213530.4206
PWY-6317 (galactose degradation I (Leloir pathway))4643280.4197
PWY0-1264 (biotin-carboxyl carrier protein assembly)5143500.4191
PWY-5194 (siroheme biosynthesis)3122470.4185
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3652770.4178
DAPLYSINESYN-PWY (lysine biosynthesis I)3422640.4167
PWY-5965 (fatty acid biosynthesis initiation III)4893390.4164
GLYCLEAV-PWY (glycine cleavage complex)3442650.4159
RIBOSYN2-PWY (flavin biosynthesis I (bacteria and plants))5233530.4136
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2902330.4122
PWY-6164 (3-dehydroquinate biosynthesis I)5163500.4120
GLUTAMINDEG-PWY (glutamine degradation I)1911700.4106
PWY-5913 (TCA cycle variation IV)3012390.4086
PWY-6124 (inosine-5'-phosphate biosynthesis II)5353570.4075
PWY-5188 (tetrapyrrole biosynthesis I)4393140.4057
P163-PWY (lysine fermentation to acetate and butyrate)3672760.4039
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911690.4035
PWY-6387 (UDP-N-acetylmuramoyl-pentapeptide biosynthesis III (meso-DAP-containing))5393580.4028
GLUTATHIONESYN-PWY (glutathione biosynthesis)3392600.4017
PWY-841 (purine nucleotides de novo biosynthesis II)4983410.4006



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG12606   EG11494   EG11318   EG11317   
EG500030.999990.9997410.999990.999971
EG126060.9997660.9999520.999923
EG114940.999680.999648
EG113180.999995
EG11317



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PAIRWISE BLAST SCORES:

  EG50003   EG12606   EG11494   EG11318   EG11317   
EG500030.0f0----
EG12606-0.0f0---
EG11494--0.0f0--
EG11318---0.0f0-
EG11317----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- PWY-5973 (cis-vaccenate biosynthesis) (degree of match pw to cand: 0.600, degree of match cand to pw: 0.600, average score: 0.960)
  Genes in pathway or complex:
   *in cand* 0.9999 0.9998 EG12606 (fabF) 3-OXOACYL-ACP-SYNTHII-MONOMER (FabF)
   *in cand* 0.9999 0.9997 EG11318 (fabG) 3-OXOACYL-ACP-REDUCT-MONOMER (3-oxo-acyl-[acyl-carrier-protein] reductase)
             0.9436 0.8198 EG11284 (fabZ) FABZ-MONOMER (FabZ)
             0.9624 0.9260 EG10273 (fabA) FABA-MONOMER (FabA)
   *in cand* 0.9999 0.9997 EG50003 (acpP) TRANS-DELTA3-CIS-DELTA5-DODECENOYL-ACP (trans-Δ3-cis-Δ5-dodecenoyl-ACP)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9999 0.9996 EG11317 (fabD) MALONYL-COA-ACP-TRANSACYL-MONOMER (malonyl-CoA-ACP transacylase)
   *in cand* 0.9998 0.9996 EG11494 (yceG) EG11494-MONOMER (predicted aminodeoxychorismate lyase)

- PWY0-881 (superpathway of fatty acid biosynthesis I (E. coli)) (degree of match pw to cand: 0.308, degree of match cand to pw: 0.800, average score: 0.874)
  Genes in pathway or complex:
             0.9996 0.9987 EG10277 (fabH) FABH-MONOMER (FabH)
             0.7767 0.4973 EG10275 (accB) BCCP-BIOTIN (biotinylated biotin-carboxyl carrier protein)
             0.8303 0.6248 EG10276 (accC) BIOTIN-CARBOXYL-MONOMER (AccC)
             0.8793 0.5905 EG11647 (accA) CARBOXYL-TRANSFERASE-ALPHA-MONOMER (acetyl-CoA carboxyltransferase, α subunit)
             0.9345 0.7849 EG10217 (accD) CARBOXYL-TRANSFERASE-BETA-MONOMER (acetyl-CoA carboxyltransferase, β subunit)
   *in cand* 0.9999 0.9996 EG11317 (fabD) MALONYL-COA-ACP-TRANSACYL-MONOMER (malonyl-CoA-ACP transacylase)
   *in cand* 0.9999 0.9998 EG12606 (fabF) 3-OXOACYL-ACP-SYNTHII-MONOMER (FabF)
             0.9940 0.9730 EG10274 (fabB) FABB-MONOMER (FabB)
   *in cand* 0.9999 0.9997 EG11318 (fabG) 3-OXOACYL-ACP-REDUCT-MONOMER (3-oxo-acyl-[acyl-carrier-protein] reductase)
             0.9776 0.9577 EG11528 (fabI) ENOYL-ACP-REDUCT-NADH-MONOMER (enoyl-[acyl-carrier-protein] reductase)
             0.9436 0.8198 EG11284 (fabZ) FABZ-MONOMER (FabZ)
             0.9624 0.9260 EG10273 (fabA) FABA-MONOMER (FabA)
   *in cand* 0.9999 0.9997 EG50003 (acpP) TRANS-DELTA3-CIS-DELTA5-DODECENOYL-ACP (trans-Δ3-cis-Δ5-dodecenoyl-ACP)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9998 0.9996 EG11494 (yceG) EG11494-MONOMER (predicted aminodeoxychorismate lyase)

- FASYN-INITIAL-PWY (superpathway of fatty acid biosynthesis initiation (E. coli)) (degree of match pw to cand: 0.333, degree of match cand to pw: 0.600, average score: 0.877)
  Genes in pathway or complex:
   *in cand* 0.9999 0.9996 EG11317 (fabD) MALONYL-COA-ACP-TRANSACYL-MONOMER (malonyl-CoA-ACP transacylase)
             0.7767 0.4973 EG10275 (accB) BCCP-BIOTIN (biotinylated biotin-carboxyl carrier protein)
             0.8303 0.6248 EG10276 (accC) BIOTIN-CARBOXYL-MONOMER (AccC)
             0.8793 0.5905 EG11647 (accA) CARBOXYL-TRANSFERASE-ALPHA-MONOMER (acetyl-CoA carboxyltransferase, α subunit)
             0.9345 0.7849 EG10217 (accD) CARBOXYL-TRANSFERASE-BETA-MONOMER (acetyl-CoA carboxyltransferase, β subunit)
             0.9996 0.9987 EG10277 (fabH) FABH-MONOMER (FabH)
             0.9940 0.9730 EG10274 (fabB) FABB-MONOMER (FabB)
   *in cand* 0.9999 0.9998 EG12606 (fabF) 3-OXOACYL-ACP-SYNTHII-MONOMER (FabF)
   *in cand* 0.9999 0.9997 EG50003 (acpP) TRANS-DELTA3-CIS-DELTA5-DODECENOYL-ACP (trans-Δ3-cis-Δ5-dodecenoyl-ACP)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9999 0.9997 EG11318 (fabG) 3-OXOACYL-ACP-REDUCT-MONOMER (3-oxo-acyl-[acyl-carrier-protein] reductase)
   *in cand* 0.9998 0.9996 EG11494 (yceG) EG11494-MONOMER (predicted aminodeoxychorismate lyase)

- FASYN-ELONG-PWY (fatty acid elongation -- saturated) (degree of match pw to cand: 0.429, degree of match cand to pw: 0.600, average score: 0.919)
  Genes in pathway or complex:
             0.9624 0.9260 EG10273 (fabA) FABA-MONOMER (FabA)
             0.9436 0.8198 EG11284 (fabZ) FABZ-MONOMER (FabZ)
             0.9776 0.9577 EG11528 (fabI) ENOYL-ACP-REDUCT-NADH-MONOMER (enoyl-[acyl-carrier-protein] reductase)
   *in cand* 0.9999 0.9997 EG11318 (fabG) 3-OXOACYL-ACP-REDUCT-MONOMER (3-oxo-acyl-[acyl-carrier-protein] reductase)
             0.9940 0.9730 EG10274 (fabB) FABB-MONOMER (FabB)
   *in cand* 0.9999 0.9998 EG12606 (fabF) 3-OXOACYL-ACP-SYNTHII-MONOMER (FabF)
   *in cand* 0.9999 0.9997 EG50003 (acpP) TRANS-DELTA3-CIS-DELTA5-DODECENOYL-ACP (trans-Δ3-cis-Δ5-dodecenoyl-ACP)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9999 0.9996 EG11317 (fabD) MALONYL-COA-ACP-TRANSACYL-MONOMER (malonyl-CoA-ACP transacylase)
   *in cand* 0.9998 0.9996 EG11494 (yceG) EG11494-MONOMER (predicted aminodeoxychorismate lyase)

- PWY-6284 (superpathway of unsaturated fatty acids biosynthesis (E. coli)) (degree of match pw to cand: 0.375, degree of match cand to pw: 0.600, average score: 0.885)
  Genes in pathway or complex:
             0.7645 0.6546 EG11542 (tesA) THIOESTERI-MONOMER (TesA)
             0.9940 0.9730 EG10274 (fabB) FABB-MONOMER (FabB)
             0.9776 0.9577 EG11528 (fabI) ENOYL-ACP-REDUCT-NADH-MONOMER (enoyl-[acyl-carrier-protein] reductase)
             0.9624 0.9260 EG10273 (fabA) FABA-MONOMER (FabA)
             0.9436 0.8198 EG11284 (fabZ) FABZ-MONOMER (FabZ)
   *in cand* 0.9999 0.9997 EG11318 (fabG) 3-OXOACYL-ACP-REDUCT-MONOMER (3-oxo-acyl-[acyl-carrier-protein] reductase)
   *in cand* 0.9999 0.9998 EG12606 (fabF) 3-OXOACYL-ACP-SYNTHII-MONOMER (FabF)
   *in cand* 0.9999 0.9997 EG50003 (acpP) TRANS-DELTA3-CIS-DELTA5-DODECENOYL-ACP (trans-Δ3-cis-Δ5-dodecenoyl-ACP)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9999 0.9996 EG11317 (fabD) MALONYL-COA-ACP-TRANSACYL-MONOMER (malonyl-CoA-ACP transacylase)
   *in cand* 0.9998 0.9996 EG11494 (yceG) EG11494-MONOMER (predicted aminodeoxychorismate lyase)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11317 EG11318 EG11494 EG12606 EG50003 (centered at EG50003)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG50003   EG12606   EG11494   EG11318   EG11317   
413/623409/623413/623411/623407/623
AAEO224324:0:Tyes666667066576
AAVE397945:0:Tyes23219410
ABAC204669:0:Tyes4280428129704349
ABAU360910:0:Tyes2364310
ABOR393595:0:Tyes23510
ABUT367737:0:Tyes7427410-272
ACAU438753:0:Tyes23410
ACEL351607:0:Tyes--1770-
ACRY349163:8:Tyes23410
ADEH290397:0:Tyes15331532015341535
AEHR187272:0:Tyes32045
AFER243159:0:Tyes10-23
AHYD196024:0:Tyes23510
AMAR234826:0:Tyes-170--0
AMAR329726:9:Tyes5431543005541-
AMET293826:0:Tyes-2644026462647
ANAE240017:0:Tyes--0--
AORE350688:0:Tyes-1390013881387
APHA212042:0:Tyes-0---
APLE416269:0:Tyes4-0175176
APLE434271:0:Tno4-0191192
ASAL382245:5:Tyes32045
ASP232721:2:Tyes15131512015141515
ASP62928:0:Tyes343503332
ASP62977:0:Tyes2-160610
ASP76114:2:Tyes333403231
AVAR240292:3:Tyes10-117-
BABO262698:1:Tno24510
BAFZ390236:2:Fyes--0--
BAMB339670:3:Tno2385010
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BAMY326423:0:Tyes44101312440439
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BAPH198804:0:Tyes2--10
BAPH372461:0:Tyes---0-
BBAC264462:0:Tyes17351734017361737
BBAC360095:0:Tyes23510
BBRO257310:0:Tyes11291128011301131
BBUR224326:21:Fno--0--
BCAN483179:1:Tno24510
BCEN331271:0:Tno--0--
BCEN331271:2:Tno23-10
BCEN331272:3:Tyes2377110
BCER226900:1:Tyes26120313526132614
BCER288681:0:Tno25190303625202521
BCER315749:1:Tyes15120209515131514
BCER405917:1:Tyes24430-24442445
BCER572264:1:Tno27020323727032704
BCIC186490:0:Tyes0--12
BCLA66692:0:Tyes7099660710711
BFRA272559:1:Tyes101441-2083
BFRA295405:0:Tno101492-2060
BGAR290434:2:Fyes--0--
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BHEN283166:0:Tyes23410
BJAP224911:0:Fyes23410
BLIC279010:0:Tyes56501588564563
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BMAL320388:1:Tno5415400542543
BMAL320389:1:Tyes5925910593594
BMEL224914:1:Tno42067
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BOVI236:1:Tyes23410
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BPET94624:0:Tyes2375010
BPSE272560:1:Tyes99899709991000
BPSE320372:1:Tno10-23
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BPUM315750:0:Tyes43301301432431
BQUI283165:0:Tyes23410
BSP107806:2:Tyes1--0-
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BSP376:0:Tyes34510
BSUB:0:Tyes49901680498497
BSUI204722:1:Tyes24510
BSUI470137:1:Tno24510
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BTRI382640:1:Tyes23410
BVIE269482:7:Tyes2377010
BWEI315730:4:Tyes25140306125152516
CABO218497:0:Tyes1--0-
CACE272562:1:Tyes621894018951896
CAULO:0:Tyes34510
CBEI290402:0:Tyes-8098468080
CBLO203907:0:Tyes0--12
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CBOT36826:1:Tno0113510211361137
CBOT441770:0:Tyes0128116712821283
CBOT441771:0:Tno0117511611761177
CBOT441772:1:Tno0120310112041205
CBOT498213:1:Tno0123917412401241
CBOT508765:1:Tyes-1310-
CBOT515621:2:Tyes0117410711751176
CBOT536232:0:Tno0125310712541255
CBUR227377:1:Tyes23410
CBUR360115:1:Tno23410
CBUR434922:2:Tno21034
CCAV227941:1:Tyes2--10
CCHL340177:0:Tyes16281627016291630
CCON360104:2:Tyes-5420--
CCUR360105:0:Tyes-0---
CDES477974:0:Tyes2326010
CDIF272563:1:Tyes-34510
CDIP257309:0:Tyes--0--
CFEL264202:1:Tyes0--1-
CFET360106:0:Tyes-4250--
CHOM360107:1:Tyes-0---
CHUT269798:0:Tyes3203190131376
CHYD246194:0:Tyes8778760878879
CJAP155077:0:Tyes23510
CJEJ192222:0:Tyes-087--
CJEJ195099:0:Tno-0135--
CJEJ354242:2:Tyes-078--
CJEJ360109:0:Tyes-860--
CJEJ407148:0:Tno-079--
CKLU431943:1:Tyes126001196-1597
CMIC31964:2:Tyes--0--
CMIC443906:2:Tyes--0--
CMUR243161:1:Tyes0--1-
CNOV386415:0:Tyes12722132410
CPEL335992:0:Tyes2---0
CPER195102:1:Tyes651270510
CPER195103:0:Tno636268910
CPER289380:3:Tyes546259810
CPHY357809:0:Tyes-2-10
CPNE115711:1:Tyes0----
CPNE115713:0:Tno0----
CPNE138677:0:Tno0----
CPNE182082:0:Tno0----
CPRO264201:0:Fyes---0-
CPSY167879:0:Tyes23510
CRUT413404:0:Tyes01-325326
CSAL290398:0:Tyes23510
CSP501479:8:Fyes42201421420
CSP78:2:Tyes23410
CSUL444179:0:Tyes0----
CTEP194439:0:Tyes2310810
CTET212717:0:Tyes-286310
CTRA471472:0:Tyes0--1-
CTRA471473:0:Tno0--1-
CVES412965:0:Tyes01-289290
CVIO243365:0:Tyes1032523
DARO159087:0:Tyes2318010
DDES207559:0:Tyes2151215202150-
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DGEO319795:1:Tyes192001817
DHAF138119:0:Tyes2442420245246
DNOD246195:0:Tyes23410
DOLE96561:0:Tyes1468-01469-
DPSY177439:2:Tyes101322-
DRAD243230:3:Tyes1060024
DRED349161:0:Tyes11691168011701171
DSHI398580:5:Tyes21034
DSP216389:0:Tyes2430-241240
DSP255470:0:Tno2410-239238
DVUL882:1:Tyes1018562-
ECAN269484:0:Tyes-0-158-
ECAR218491:0:Tyes23510
ECHA205920:0:Tyes-0---
ECOL199310:0:Tno237-0
ECOL316407:0:Tno23510
ECOL331111:6:Tno23510
ECOL362663:0:Tno23510
ECOL364106:1:Tno34710
ECOL405955:2:Tyes-3510
ECOL409438:6:Tyes23510
ECOL413997:0:Tno23510
ECOL439855:4:Tno32045
ECOL469008:0:Tno32045
ECOL481805:0:Tno32045
ECOL585034:0:Tno23510
ECOL585035:0:Tno23510
ECOL585055:0:Tno23510
ECOL585056:2:Tno23710
ECOL585057:0:Tno32045
ECOL585397:0:Tno23510
ECOL83334:0:Tno23510
ECOLI:0:Tno23510
ECOO157:0:Tno23510
EFAE226185:3:Tyes-02469-2438
EFER585054:1:Tyes32045
ELIT314225:0:Tyes012680681
ERUM254945:0:Tyes-0-186-
ERUM302409:0:Tno-0---
ESP42895:1:Tyes23510
FALN326424:0:Tyes1539-0--
FJOH376686:0:Tyes11391140029211742
FNOD381764:0:Tyes0----
FNUC190304:0:Tyes3033040647302
FPHI484022:1:Tyes10-23
FRANT:0:Tno23-10
FSP106370:0:Tyes--0--
FSP1855:0:Tyes3595-0536-
FSUC59374:0:Tyes--137624170
FTUL351581:0:Tno10-23
FTUL393011:0:Tno10-23
FTUL393115:0:Tyes23-10
FTUL401614:0:Tyes23-10
FTUL418136:0:Tno10-23
FTUL458234:0:Tno10-23
GBET391165:0:Tyes21045
GFOR411154:0:Tyes3106310735014910
GKAU235909:1:Tyes38701768386385
GMET269799:1:Tyes23142210
GOXY290633:5:Tyes23410
GSUL243231:0:Tyes10901091010891088
GTHE420246:1:Tyes35501765354353
GURA351605:0:Tyes23173510
GVIO251221:0:Tyes11972923024091030
HACI382638:1:Tyes-0---
HARS204773:0:Tyes6336320634635
HAUR316274:2:Tyes7-375330
HCHE349521:0:Tyes2-410
HDUC233412:0:Tyes1063-106510
HHAL349124:0:Tyes12470212481249
HHEP235279:0:Tyes10---
HINF281310:0:Tyes0-30812
HINF374930:0:Tyes315-0314313
HINF71421:0:Tno0-29212
HMOD498761:0:Tyes19061908019051904
HNEP81032:0:Tyes21035
HPY:0:Tno-0---
HPYL357544:1:Tyes-0---
HPYL85963:0:Tno-0---
HSOM205914:1:Tyes2-132510
HSOM228400:0:Tno2-48710
ILOI283942:0:Tyes2-034
JSP290400:1:Tyes35620
JSP375286:0:Tyes2364110
KPNE272620:2:Tyes23510
KRAD266940:2:Fyes--0--
LBIF355278:2:Tyes0-731--
LBIF456481:2:Tno0-768--
LBOR355276:1:Tyes0-1363--
LBOR355277:1:Tno1310-0--
LBRE387344:2:Tyes--0--
LCHO395495:0:Tyes10128223
LGAS324831:0:Tyes--0--
LINN272626:1:Tno4128000413414
LINT189518:0:Tyes0----
LINT189518:1:Tyes--0--
LINT267671:0:Tno0----
LINT267671:1:Tno--0--
LINT363253:3:Tyes-0341--
LJOH257314:0:Tyes--0--
LLAC272622:5:Tyes--0-153
LLAC272623:0:Tyes--0-138
LMON169963:0:Tno3357350336337
LMON265669:0:Tyes3117080312313
LPLA220668:0:Tyes--0--
LPNE272624:0:Tno23410
LPNE297245:1:Fno23410
LPNE297246:1:Fyes23410
LPNE400673:0:Tno23410
LSPH444177:1:Tyes29802521297295
LWEL386043:0:Tyes3137060314315
LXYL281090:0:Tyes--0--
MAER449447:0:Tyes01-1911-
MAQU351348:2:Tyes32045
MCAP243233:0:Tyes32045
MEXT419610:0:Tyes23410
MFLA265072:0:Tyes32045
MLOT266835:2:Tyes23410
MMAG342108:0:Tyes23410
MMAR394221:0:Tyes34520
MPET420662:1:Tyes23122010
MSME246196:0:Tyes---0-
MSP266779:3:Tyes21034
MSP400668:0:Tyes2314010
MSP409:2:Tyes32045
MSUC221988:0:Tyes1348-013471346
MTHE264732:0:Tyes2367610
MXAN246197:0:Tyes10-23
NARO279238:0:Tyes0129493
NEUR228410:0:Tyes23410
NEUT335283:2:Tyes21034
NGON242231:0:Tyes13921393017661769
NHAM323097:2:Tyes21034
NMEN122586:0:Tno1043416371634
NMEN122587:0:Tyes01791478481
NMEN272831:0:Tno103697881
NMEN374833:0:Tno1603160431703
NMUL323848:3:Tyes23410
NOCE323261:1:Tyes32045
NSP103690:6:Tyes14671468-0-
NSP35761:1:Tyes---0-
NSP387092:0:Tyes01536-911
NWIN323098:0:Tyes21035
OANT439375:5:Tyes23410
OCAR504832:0:Tyes21045
OIHE221109:0:Tyes3200806319318
OTSU357244:0:Fyes-0---
PACN267747:0:Tyes--0--
PAER208963:0:Tyes23510
PAER208964:0:Tno32045
PARC259536:0:Tyes38218430381380
PATL342610:0:Tyes32045
PCAR338963:0:Tyes7947950793792
PCRY335284:1:Tyes36221100361360
PDIS435591:0:Tyes--3000261
PENT384676:0:Tyes23510
PFLU205922:0:Tyes32045
PFLU216595:1:Tyes32045
PFLU220664:0:Tyes23510
PGIN242619:0:Tyes1416141513569630
PHAL326442:1:Tyes32045
PING357804:0:Tyes23510
PINT246198:1:Tyes10--826
PLUM243265:0:Fyes32045
PLUT319225:0:Tyes10194523
PMAR146891:0:Tyes13061307-0-
PMAR167539:0:Tyes13411342-0-
PMAR167540:0:Tyes-1181-0-
PMAR167542:0:Tyes-1308-0-
PMAR167546:0:Tyes13311332-0-
PMAR167555:0:Tyes15731574-0-
PMAR59920:0:Tno01-612-
PMAR74546:0:Tyes12761277-0-
PMAR74547:0:Tyes644645-0-
PMAR93060:0:Tyes13711372-0-
PMEN399739:0:Tyes23510
PMUL272843:1:Tyes245-0244243
PNAP365044:8:Tyes11291128011301131
PPEN278197:0:Tyes0----
PPRO298386:2:Tyes23510
PPUT160488:0:Tno23510
PPUT351746:0:Tyes32045
PPUT76869:0:Tno23510
PRUM264731:0:Tyes18421841677-0
PSP117:0:Tyes24--0
PSP296591:2:Tyes11221121011231124
PSP312153:0:Tyes2358110
PSP56811:2:Tyes339860338337
PSTU379731:0:Tyes32045
PSYR205918:0:Tyes23510
PSYR223283:2:Tyes32045
PTHE370438:0:Tyes-6770-681
RAKA293614:0:Fyes6656660664646
RALB246199:0:Tyes----0
RBEL336407:0:Tyes-07112-
RBEL391896:0:Fno-4150413-
RCAN293613:0:Fyes1941950--
RCAS383372:0:Tyes28320298928291086
RCON272944:0:Tno-7670764696
RDEN375451:4:Tyes31045
RETL347834:5:Tyes23410
REUT264198:3:Tyes8408390841842
REUT381666:2:Tyes9499480950951
RFEL315456:2:Tyes-7210719-
RFER338969:1:Tyes2352310
RLEG216596:6:Tyes23410
RMAS416276:1:Tyes-5350-498
RMET266264:2:Tyes5965950597598
RPAL258594:0:Tyes21034
RPAL316055:0:Tyes21034
RPAL316056:0:Tyes34520
RPAL316057:0:Tyes21037
RPAL316058:0:Tyes23410
RPOM246200:1:Tyes41056
RPRO272947:0:Tyes-4320430403
RRIC392021:0:Fno7277280725668
RRIC452659:0:Tyes7427430741684
RRUB269796:1:Tyes23410
RSAL288705:0:Tyes--0--
RSOL267608:1:Tyes2376210
RSP357808:0:Tyes03583-32466
RSPH272943:4:Tyes1230217
RSPH349101:2:Tno1230217
RSPH349102:5:Tyes1230152
RTYP257363:0:Tno-4360434-
RXYL266117:0:Tyes22-021-
SACI56780:0:Tyes10493--
SAGA205921:0:Tno--1166-0
SAGA208435:0:Tno--1236-0
SAGA211110:0:Tyes--1313-0
SALA317655:1:Tyes0116816371638
SAUR158878:1:Tno2500-249248
SAUR158879:1:Tno2450-244243
SAUR196620:0:Tno2520-251250
SAUR273036:0:Tno2430-242241
SAUR282458:0:Tno2560-255254
SAUR282459:0:Tno3170-316315
SAUR359786:1:Tno3090-308307
SAUR359787:1:Tno3110-310309
SAUR367830:3:Tno2360-235234
SAUR418127:0:Tyes2460-245244
SAUR426430:0:Tno2910-290289
SAUR93061:0:Fno2680-266265
SAUR93062:1:Tno2530-251250
SAVE227882:1:Fyes---0-
SBAL399599:3:Tyes2383510
SBAL402882:1:Tno2375510
SBOY300268:1:Tyes32045
SCO:2:Fyes--0686-
SDEG203122:0:Tyes23510
SDEN318161:0:Tyes2382370239240
SDYS300267:1:Tyes32045
SELO269084:0:Tyes905904-7560
SENT209261:0:Tno32045
SENT220341:0:Tno23510
SENT295319:0:Tno32045
SENT321314:2:Tno23710
SENT454169:2:Tno23510
SEPI176279:1:Tyes2220-221220
SEPI176280:0:Tno2320-231230
SFLE198214:0:Tyes23510
SFLE373384:0:Tno23510
SFUM335543:0:Tyes20661188701893
SGLO343509:3:Tyes23510
SGOR29390:0:Tyes--0-1151
SHAE279808:0:Tyes0293-12
SHAL458817:0:Tyes2363110
SHIGELLA:0:Tno23510
SLAC55218:1:Fyes26710
SLOI323850:0:Tyes262702524
SMED366394:3:Tyes23410
SMEL266834:2:Tyes23410
SMUT210007:0:Tyes--0-12
SONE211586:1:Tyes1601590161162
SPEA398579:0:Tno6086070609610
SPNE1313:0:Tyes----0
SPNE170187:0:Tyes--504-0
SPNE171101:0:Tno--996-0
SPNE487213:0:Tno--931-0
SPNE487214:0:Tno--1060-0
SPNE488221:0:Tno--1005-0
SPRO399741:1:Tyes23510
SPYO160490:0:Tno--0-1113
SPYO186103:0:Tno--0-1198
SPYO193567:0:Tno--1279-0
SPYO198466:0:Tno--0-1270
SPYO286636:0:Tno--0-1182
SPYO293653:0:Tno--0-1205
SPYO319701:0:Tyes--0-1202
SPYO370551:0:Tno--0-1214
SPYO370552:0:Tno--0-1284
SPYO370553:0:Tno--0-1223
SPYO370554:0:Tyes--0-1277
SRUB309807:1:Tyes26542653245020
SSAP342451:2:Tyes0263-12
SSED425104:0:Tyes102723
SSON300269:1:Tyes23510
SSP1131:0:Tyes10-508-
SSP1148:0:Tyes10-307-
SSP292414:2:Tyes24510
SSP321327:0:Tyes487486521130
SSP321332:0:Tyes01610414655
SSP387093:0:Tyes10---
SSP644076:5:Fyes35610
SSP64471:0:Tyes10-1970-
SSP84588:0:Tyes10-1737-
SSP94122:1:Tyes-8120813814
SSUI391295:0:Tyes--0-87
SSUI391296:0:Tyes--0-78
STHE264199:0:Tyes--0-139
STHE292459:0:Tyes50401053503502
STHE299768:0:Tno--0-133
STHE322159:2:Tyes--0-123
STYP99287:1:Tyes23510
SWOL335541:0:Tyes-1338013401341
TCRU317025:0:Tyes23610
TDEN243275:0:Tyes--0--
TDEN292415:0:Tyes43056
TDEN326298:0:Tyes5705690--
TELO197221:0:Tyes376375-0-
TERY203124:0:Tyes1034572621-
TFUS269800:0:Tyes--0--
TLET416591:0:Tyes0----
TMAR243274:0:Tyes0--1039-
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TPET390874:0:Tno0--765-
TPSE340099:0:Tyes2252240226227
TROS309801:0:Tyes-0423--
TROS309801:1:Tyes0--34
TSP1755:0:Tyes2242230225226
TSP28240:0:Tyes0--858-
TTEN273068:0:Tyes2142130215216
TTHE262724:1:Tyes10145323
TTHE300852:2:Tyes10144223
TTUR377629:0:Tyes34610
TWHI203267:0:Tyes--0--
TWHI218496:0:Tno--0--
VCHO:0:Tyes32045
VCHO345073:1:Tno32045
VEIS391735:1:Tyes22312230022322233
VFIS312309:2:Tyes32045
VPAR223926:1:Tyes32045
VVUL196600:2:Tyes23510
VVUL216895:1:Tno42056
WPIP80849:0:Tyes-858--0
WPIP955:0:Tyes-0---
WSUC273121:0:Tyes0-399--
XAUT78245:1:Tyes17181901
XAXO190486:0:Tyes23510
XCAM190485:0:Tyes23510
XCAM314565:0:Tno32045
XCAM316273:0:Tno23510
XCAM487884:0:Tno32045
XFAS160492:2:Tno23510
XFAS183190:1:Tyes32045
XFAS405440:0:Tno32045
XORY291331:0:Tno23510
XORY342109:0:Tyes23510
XORY360094:0:Tno640810
YENT393305:1:Tyes23510
YPES187410:5:Tno23610
YPES214092:3:Tno23610
YPES349746:2:Tno43056
YPES360102:3:Tyes43056
YPES377628:2:Tno43056
YPES386656:2:Tno43056
YPSE273123:2:Tno32045
YPSE349747:2:Tno23510
ZMOB264203:0:Tyes58575601



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