CANDIDATE ID: 187

CANDIDATE ID: 187

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9972940e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    4.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages




GENE LIST:

- G7458 (amiC) (b2817)
   Products of gene:
     - G7458-MONOMER (N-acetylmuramyl-L-alanine amidase)
       Reactions:
        a peptidoglycan + H2O  =  N-acetylmuramate + a peptide

- EG11823 (amiA) (b2435)
   Products of gene:
     - NACMURLALAAMI1-MONOMER (N-acetylmuramoyl-L-alanine amidase 1)
       Reactions:
        a peptidoglycan + H2O  =  N-acetylmuramate + a peptide

- EG11757 (yjeE) (b4168)
   Products of gene:
     - EG11757-MONOMER (essential protein with weak ATPase activity)
     - CPLX0-7798 (essential protein with weak ATPase activity)

- EG11363 (amiB) (b4169)
   Products of gene:
     - NACMURLALAAMI2-MONOMER (N-acetylmuramoyl-L-alanine amidase 2)
       Reactions:
        a peptidoglycan + H2O  =  N-acetylmuramate + a peptide

- EG11281 (mutL) (b4170)
   Products of gene:
     - EG11281-MONOMER (MutL)
     - MUTHLS-CPLX (MutHLS complex, methyl-directed mismatch repair)
       Reactions:
        a mismatched DNA base pair  =  a properly matched DNA base pair



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 272
Effective number of orgs (counting one per cluster within 468 clusters): 199

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM45
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A5
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110185
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103315
XFAS405440 ncbi Xylella fastidiosa M125
XFAS183190 ncbi Xylella fastidiosa Temecula15
XFAS160492 ncbi Xylella fastidiosa 9a5c5
XCAM487884 Xanthomonas campestris pv. paulliniae5
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-105
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80045
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339135
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3065
XAUT78245 ncbi Xanthobacter autotrophicus Py24
VVUL216895 ncbi Vibrio vulnificus CMCP65
VVUL196600 ncbi Vibrio vulnificus YJ0165
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106335
VFIS312309 ncbi Vibrio fischeri ES1145
VEIS391735 ncbi Verminephrobacter eiseniae EF01-25
VCHO345073 ncbi Vibrio cholerae O3955
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169615
TTUR377629 ncbi Teredinibacter turnerae T79015
TSP1755 Thermoanaerobacter sp.5
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332235
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252594
TCRU317025 ncbi Thiomicrospira crunogena XCL-25
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
SSP94122 ncbi Shewanella sp. ANA-35
SSP644076 Silicibacter sp. TrichCH4B5
SSP292414 ncbi Ruegeria sp. TM10405
SSP1148 ncbi Synechocystis sp. PCC 68034
SSON300269 ncbi Shigella sonnei Ss0465
SSED425104 ncbi Shewanella sediminis HAW-EB35
SRUB309807 ncbi Salinibacter ruber DSM 138554
SPRO399741 ncbi Serratia proteamaculans 5685
SPEA398579 ncbi Shewanella pealeana ATCC 7003455
SONE211586 ncbi Shewanella oneidensis MR-15
SMEL266834 ncbi Sinorhizobium meliloti 10215
SMED366394 ncbi Sinorhizobium medicae WSM4195
SLOI323850 ncbi Shewanella loihica PV-45
SLAC55218 Ruegeria lacuscaerulensis5
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SHAL458817 ncbi Shewanella halifaxensis HAW-EB45
SGLO343509 ncbi Sodalis glossinidius morsitans5
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB5
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SDYS300267 ncbi Shigella dysenteriae Sd1975
SDEN318161 ncbi Shewanella denitrificans OS2175
SDEG203122 ncbi Saccharophagus degradans 2-405
SBOY300268 ncbi Shigella boydii Sb2275
SBAL402882 ncbi Shewanella baltica OS1855
SBAL399599 ncbi Shewanella baltica OS1955
SALA317655 ncbi Sphingopyxis alaskensis RB22565
SACI56780 ncbi Syntrophus aciditrophicus SB5
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170255
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170295
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.15
RSOL267608 ncbi Ralstonia solanacearum GMI10005
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111705
RPOM246200 ncbi Ruegeria pomeroyi DSS-35
RPAL316058 ncbi Rhodopseudomonas palustris HaA25
RPAL316057 ncbi Rhodopseudomonas palustris BisB55
RPAL316056 ncbi Rhodopseudomonas palustris BisB185
RPAL316055 ncbi Rhodopseudomonas palustris BisA535
RPAL258594 ncbi Rhodopseudomonas palustris CGA0095
RMET266264 ncbi Ralstonia metallidurans CH345
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38415
RFER338969 ncbi Rhodoferax ferrireducens T1185
REUT381666 ncbi Ralstonia eutropha H165
REUT264198 ncbi Ralstonia eutropha JMP1345
RETL347834 ncbi Rhizobium etli CFN 425
RDEN375451 ncbi Roseobacter denitrificans OCh 1144
PTHE370438 ncbi Pelotomaculum thermopropionicum SI4
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30005
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a5
PSTU379731 ncbi Pseudomonas stutzeri A15015
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-14
PSP296591 ncbi Polaromonas sp. JS6665
PPUT76869 ncbi Pseudomonas putida GB-15
PPUT351746 ncbi Pseudomonas putida F15
PPUT160488 ncbi Pseudomonas putida KT24405
PPRO298386 ncbi Photobacterium profundum SS95
PNAP365044 ncbi Polaromonas naphthalenivorans CJ25
PMUL272843 ncbi Pasteurella multocida multocida Pm705
PMEN399739 ncbi Pseudomonas mendocina ymp5
PLUT319225 ncbi Chlorobium luteolum DSM 2734
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO15
PINT246198 Prevotella intermedia 174
PING357804 ncbi Psychromonas ingrahamii 375
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1255
PGIN242619 ncbi Porphyromonas gingivalis W835
PFLU220664 ncbi Pseudomonas fluorescens Pf-55
PFLU216595 ncbi Pseudomonas fluorescens SBW255
PFLU205922 ncbi Pseudomonas fluorescens Pf0-15
PENT384676 ncbi Pseudomonas entomophila L485
PDIS435591 ncbi Parabacteroides distasonis ATCC 85035
PCAR338963 ncbi Pelobacter carbinolicus DSM 23805
PATL342610 ncbi Pseudoalteromonas atlantica T6c5
PAER208964 ncbi Pseudomonas aeruginosa PAO15
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA145
OCAR504832 ncbi Oligotropha carboxidovorans OM55
OANT439375 ncbi Ochrobactrum anthropi ATCC 491885
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2555
NSP103690 ncbi Nostoc sp. PCC 71204
NOCE323261 ncbi Nitrosococcus oceani ATCC 197075
NMUL323848 ncbi Nitrosospira multiformis ATCC 251965
NMEN374833 ncbi Neisseria meningitidis 0534425
NMEN272831 ncbi Neisseria meningitidis FAM185
NMEN122587 ncbi Neisseria meningitidis Z24915
NMEN122586 ncbi Neisseria meningitidis MC585
NHAM323097 ncbi Nitrobacter hamburgensis X145
NGON242231 ncbi Neisseria gonorrhoeae FA 10905
NEUT335283 ncbi Nitrosomonas eutropha C915
NEUR228410 ncbi Nitrosomonas europaea ATCC 197185
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124445
MXAN246197 ncbi Myxococcus xanthus DK 16224
MTHE264732 ncbi Moorella thermoacetica ATCC 390735
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E5
MSP409 Methylobacterium sp.5
MSP400668 ncbi Marinomonas sp. MWYL15
MSP266779 ncbi Chelativorans sp. BNC15
MPET420662 ncbi Methylibium petroleiphilum PM15
MMAR394221 ncbi Maricaulis maris MCS105
MMAG342108 ncbi Magnetospirillum magneticum AMB-15
MLOT266835 ncbi Mesorhizobium loti MAFF3030995
MFLA265072 ncbi Methylobacillus flagellatus KT5
MEXT419610 ncbi Methylobacterium extorquens PA15
MCAP243233 ncbi Methylococcus capsulatus Bath5
MAQU351348 ncbi Marinobacter aquaeolei VT85
MAER449447 ncbi Microcystis aeruginosa NIES-8434
LPNE400673 ncbi Legionella pneumophila Corby5
LPNE297246 ncbi Legionella pneumophila Paris5
LPNE297245 ncbi Legionella pneumophila Lens5
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 15
LCHO395495 ncbi Leptothrix cholodnii SP-65
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
JSP375286 ncbi Janthinobacterium sp. Marseille5
JSP290400 ncbi Jannaschia sp. CCS15
ILOI283942 ncbi Idiomarina loihiensis L2TR5
HSOM228400 ncbi Haemophilus somnus 23365
HSOM205914 ncbi Haemophilus somnus 129PT5
HNEP81032 Hyphomonas neptunium5
HMOD498761 ncbi Heliobacterium modesticaldum Ice15
HINF71421 ncbi Haemophilus influenzae Rd KW205
HINF374930 ncbi Haemophilus influenzae PittEE4
HINF281310 ncbi Haemophilus influenzae 86-028NP5
HHAL349124 ncbi Halorhodospira halophila SL15
HDUC233412 ncbi Haemophilus ducreyi 35000HP5
HCHE349521 ncbi Hahella chejuensis KCTC 23965
HARS204773 ncbi Herminiimonas arsenicoxydans5
GURA351605 ncbi Geobacter uraniireducens Rf45
GSUL243231 ncbi Geobacter sulfurreducens PCA5
GOXY290633 ncbi Gluconobacter oxydans 621H5
GMET269799 ncbi Geobacter metallireducens GS-155
GBET391165 ncbi Granulibacter bethesdensis CGDNIH14
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255865
ESP42895 Enterobacter sp.5
ELIT314225 ncbi Erythrobacter litoralis HTCC25945
EFER585054 ncbi Escherichia fergusonii ATCC 354695
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DSHI398580 ncbi Dinoroseobacter shibae DFL 125
DRED349161 ncbi Desulfotomaculum reducens MI-15
DOLE96561 ncbi Desulfococcus oleovorans Hxd35
DNOD246195 ncbi Dichelobacter nodosus VCS1703A5
DARO159087 ncbi Dechloromonas aromatica RCB5
CVIO243365 ncbi Chromobacterium violaceum ATCC 124725
CTEP194439 ncbi Chlorobium tepidum TLS4
CSP78 Caulobacter sp.5
CSP501479 Citreicella sp. SE455
CSAL290398 ncbi Chromohalobacter salexigens DSM 30435
CPSY167879 ncbi Colwellia psychrerythraea 34H5
CJAP155077 Cellvibrio japonicus5
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334064
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C5
CCHL340177 ncbi Chlorobium chlorochromatii CaD35
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1115
CBUR360115 ncbi Coxiella burnetii RSA 3315
CBUR227377 ncbi Coxiella burnetii RSA 4935
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN4
CBLO203907 ncbi Candidatus Blochmannia floridanus4
CAULO ncbi Caulobacter crescentus CB155
BVIE269482 ncbi Burkholderia vietnamiensis G45
BTRI382640 ncbi Bartonella tribocorum CIP 1054765
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54824
BTHA271848 ncbi Burkholderia thailandensis E2645
BSUI470137 ncbi Brucella suis ATCC 234455
BSUI204722 ncbi Brucella suis 13305
BSUB ncbi Bacillus subtilis subtilis 1685
BSP376 Bradyrhizobium sp.5
BSP36773 Burkholderia sp.5
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)4
BQUI283165 ncbi Bartonella quintana Toulouse5
BPSE320373 ncbi Burkholderia pseudomallei 6685
BPSE320372 ncbi Burkholderia pseudomallei 1710b5
BPSE272560 ncbi Burkholderia pseudomallei K962435
BPET94624 Bordetella petrii5
BPER257313 ncbi Bordetella pertussis Tohama I5
BPAR257311 ncbi Bordetella parapertussis 128225
BOVI236 Brucella ovis5
BMEL359391 ncbi Brucella melitensis biovar Abortus 23085
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M5
BMAL320389 ncbi Burkholderia mallei NCTC 102475
BMAL320388 ncbi Burkholderia mallei SAVP15
BMAL243160 ncbi Burkholderia mallei ATCC 233445
BLIC279010 ncbi Bacillus licheniformis ATCC 145804
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1105
BHEN283166 ncbi Bartonella henselae Houston-14
BFRA295405 ncbi Bacteroides fragilis YCH464
BFRA272559 ncbi Bacteroides fragilis NCTC 93434
BCLA66692 ncbi Bacillus clausii KSM-K165
BCIC186490 Candidatus Baumannia cicadellinicola4
BCEN331272 ncbi Burkholderia cenocepacia HI24245
BCEN331271 ncbi Burkholderia cenocepacia AU 10545
BCAN483179 ncbi Brucella canis ATCC 233655
BBRO257310 ncbi Bordetella bronchiseptica RB505
BBAC360095 ncbi Bartonella bacilliformis KC5835
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)4
BAMY326423 ncbi Bacillus amyloliquefaciens FZB424
BAMB398577 ncbi Burkholderia ambifaria MC40-65
BAMB339670 ncbi Burkholderia ambifaria AMMD5
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9415
AVAR240292 ncbi Anabaena variabilis ATCC 294134
ASP76114 ncbi Aromatoleum aromaticum EbN15
ASP62928 ncbi Azoarcus sp. BH725
ASP232721 ncbi Acidovorax sp. JS424
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4495
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL035
APLE416269 ncbi Actinobacillus pleuropneumoniae L205
AMET293826 ncbi Alkaliphilus metalliredigens QYMF4
AHYD196024 Aeromonas hydrophila dhakensis5
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232705
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-15
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C5
ACRY349163 ncbi Acidiphilium cryptum JF-55
ACAU438753 ncbi Azorhizobium caulinodans ORS 5714
ABOR393595 ncbi Alcanivorax borkumensis SK25
ABAU360910 ncbi Bordetella avium 197N5
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3455
AAVE397945 ncbi Acidovorax citrulli AAC00-15


Names of the homologs of the genes in the group in each of these orgs
  G7458   EG11823   EG11757   EG11363   EG11281   
ZMOB264203 ZMO0195ZMO0195ZMO1101ZMO0195ZMO0354
YPSE349747 YPSIP31758_0994YPSIP31758_0994YPSIP31758_3657YPSIP31758_3656YPSIP31758_3655
YPSE273123 YPTB3022YPTB3022YPTB0421YPTB0422YPTB0423
YPES386656 YPDSF_1689YPDSF_1689YPDSF_3605YPDSF_3604YPDSF_3603
YPES377628 YPN_2978YPN_2978YPN_3302YPN_3301YPN_3300
YPES360102 YPA_0495YPA_0495YPA_3915YPA_3914YPA_3913
YPES349746 YPANGOLA_A3228YPANGOLA_A3228YPANGOLA_A0703YPANGOLA_A0702YPANGOLA_A0701
YPES214092 YPO1023YPO1023YPO0369YPO0370YPO0371
YPES187410 Y3161Y3161Y0626Y0627Y0628
YENT393305 YE3307YE3307YE0373YE0374YE0375
XORY360094 XOOORF_1979XOOORF_1979XOOORF_1978XOOORF_1979XOOORF_1980
XORY342109 XOO2578XOO2578XOO2579XOO2578XOO2577
XORY291331 XOO2733XOO2733XOO2734XOO2733XOO2732
XFAS405440 XFASM12_2082XFASM12_2082XFASM12_2083XFASM12_2082XFASM12_2081
XFAS183190 PD_1898PD_1898PD_1899PD_1898PD_1897
XFAS160492 XF0759XF0759XF0758XF0759XF0760
XCAM487884 XCC-B100_1879XCC-B100_1879XCC-B100_1878XCC-B100_1879XCC-B100_1880
XCAM316273 XCAORF_2571XCAORF_2571XCAORF_2572XCAORF_2571XCAORF_2570
XCAM314565 XC_1816XC_1816XC_1815XC_1816XC_1817
XCAM190485 XCC2299XCC2299XCC2300XCC2299XCC2298
XAXO190486 XAC2406XAC2406XAC2407XAC2406XAC2405
XAUT78245 XAUT_4667XAUT_4667XAUT_4667XAUT_3054
VVUL216895 VV1_1291VV1_1291VV1_1290VV1_1291VV1_1292
VVUL196600 VV3074VV3074VV3075VV3074VV3073
VPAR223926 VP2820VP2820VP2821VP2820VP2819
VFIS312309 VF2326VF2326VF2327VF2326VF2325
VEIS391735 VEIS_1711VEIS_1711VEIS_1712VEIS_1711VEIS_4225
VCHO345073 VC0395_A2755VC0395_A2755VC0395_A2754VC0395_A2755VC0395_A2756
VCHO VC0344VC0344VC0343VC0344VC0345
TTUR377629 TERTU_3561TERTU_3561TERTU_3562TERTU_3561TERTU_3560
TSP1755 TETH514_0926TETH514_0776TETH514_0488TETH514_0926TETH514_1612
TPSE340099 TETH39_0447TETH39_0284TETH39_1745TETH39_0447TETH39_1175
TDEN292415 TBD_1519TBD_1519TBD_1519TBD_1517
TCRU317025 TCR_1083TCR_1083TCR_1082TCR_1083TCR_1084
STYP99287 STM2991STM2450STM4357STM4358STM4359
SSP94122 SHEWANA3_0594SHEWANA3_0594SHEWANA3_0593SHEWANA3_0594SHEWANA3_0595
SSP644076 SCH4B_4242SCH4B_4242SCH4B_3165SCH4B_4242SCH4B_3482
SSP292414 TM1040_0866TM1040_0866TM1040_2842TM1040_0866TM1040_0102
SSP1148 SLR1910SLR1744SLL0257SLR1744
SSON300269 SSO_2974SSO_2524SSO_4353SSO_4354SSO_4355
SSED425104 SSED_0794SSED_0794SSED_0793SSED_0794SSED_0795
SRUB309807 SRU_2497SRU_2419SRU_2497SRU_1712
SPRO399741 SPRO_3811SPRO_3463SPRO_0427SPRO_0428SPRO_0429
SPEA398579 SPEA_3543SPEA_3543SPEA_3544SPEA_3543SPEA_3542
SONE211586 SO_0600SO_0600SO_0599SO_0600SO_0601
SMEL266834 SMC01335SMC01335SMC02757SMC01335SMC00932
SMED366394 SMED_0959SMED_0959SMED_3245SMED_0959SMED_0428
SLOI323850 SHEW_0563SHEW_0563SHEW_0562SHEW_0563SHEW_0564
SLAC55218 SL1157_2544SL1157_2544SL1157_1063SL1157_2544SL1157_1337
SHIGELLA S3025AMIAYJEEAMIBMUTL
SHAL458817 SHAL_3637SHAL_3637SHAL_3638SHAL_3637SHAL_3636
SGLO343509 SG1961SG1961SG0333SG0334SG0335
SFUM335543 SFUM_0729SFUM_0729SFUM_2169SFUM_0729SFUM_1919
SFLE373384 SFV_2895SFV_2487SFV_4326SFV_4327SFV_4328
SFLE198214 AAN44315.1AAN43993.1AAN45740.1AAN45741.1AAN45742.1
SENT454169 SEHA_C3203SEHA_C2710SEHA_C4775SEHA_C4776SEHA_C4777
SENT321314 SCH_2929SCH_2449SCH_4233SCH_4234SCH_4235
SENT295319 SPA2856SPA0416SPA4174SPA4175SPA4176
SENT220341 STY3129STY2687STY4714STY4715STY4716
SENT209261 T2899T0408T4408T4409T4410
SDYS300267 SDY_3034SDY_2633SDY_4421SDY_4420SDY_4419
SDEN318161 SDEN_3208SDEN_3208SDEN_3209SDEN_3208SDEN_3207
SDEG203122 SDE_2670SDE_2670SDE_2671SDE_2670SDE_2669
SBOY300268 SBO_2707SBO_2460SBO_4288SBO_4287SBO_4286
SBAL402882 SHEW185_3770SHEW185_3770SHEW185_3771SHEW185_3770SHEW185_3769
SBAL399599 SBAL195_3896SBAL195_3896SBAL195_3897SBAL195_3896SBAL195_3895
SALA317655 SALA_3173SALA_3173SALA_0161SALA_3173SALA_1626
SACI56780 SYN_02145SYN_02145SYN_02780SYN_02145SYN_02889
RSPH349102 RSPH17025_1858RSPH17025_1858RSPH17025_2955RSPH17025_1858RSPH17025_2933
RSPH349101 RSPH17029_1625RSPH17029_1625RSPH17029_0174RSPH17029_1625RSPH17029_2758
RSPH272943 RSP_2979RSP_2979RSP_1522RSP_2979RSP_1095
RSOL267608 RSC2539RSC2539RSC2540RSC2539RSC2563
RRUB269796 RRU_A2148RRU_A2148RRU_A3438RRU_A2148RRU_A2946
RPOM246200 SPO_2588SPO_2588SPO_3869SPO_2588SPO_3362
RPAL316058 RPB_3008RPB_3008RPB_0625RPB_3008RPB_4176
RPAL316057 RPD_2443RPD_2443RPD_0206RPD_2443RPD_4032
RPAL316056 RPC_2853RPC_2853RPC_0383RPC_2853RPC_1389
RPAL316055 RPE_2978RPE_2978RPE_0464RPE_2978RPE_1420
RPAL258594 RPA2451RPA2451RPA0078RPA2451RPA4371
RMET266264 RMET_0526RMET_0526RMET_0525RMET_0526RMET_2908
RLEG216596 RL1742RL1742RL0029RL1742RL0910
RFER338969 RFER_3303RFER_3303RFER_3302RFER_3303RFER_3308
REUT381666 H16_A0597H16_A0597H16_A0596H16_A0597H16_A3069
REUT264198 REUT_A0584REUT_A0584REUT_A0583REUT_A0584REUT_A2769
RETL347834 RHE_CH01646RHE_CH01646RHE_CH00029RHE_CH01646RHE_CH00848
RDEN375451 RD1_2821RD1_2821RD1_2821RD1_0662
PTHE370438 PTH_0361PTH_1425PTH_0741PTH_1342
PSYR223283 PSPTO_4945PSPTO_4945PSPTO_4946PSPTO_4945PSPTO_4944
PSYR205918 PSYR_0569PSYR_0569PSYR_0568PSYR_0569PSYR_0570
PSTU379731 PST_3671PST_3671PST_3672PST_3671PST_3670
PSP312153 PNUC_0595PNUC_0595PNUC_0596PNUC_0595
PSP296591 BPRO_3199BPRO_3199BPRO_3198BPRO_3199BPRO_3209
PPUT76869 PPUTGB1_4949PPUTGB1_4949PPUTGB1_4950PPUTGB1_4949PPUTGB1_4948
PPUT351746 PPUT_4773PPUT_4773PPUT_4774PPUT_4773PPUT_4772
PPUT160488 PP_4897PP_4897PP_4898PP_4897PP_4896
PPRO298386 PBPRA3353PBPRA3353PBPRA3354PBPRA3353PBPRA3352
PNAP365044 PNAP_1170PNAP_1170PNAP_1171PNAP_1170PNAP_1157
PMUL272843 PM0903PM0903PM0902PM0903PM0904
PMEN399739 PMEN_0632PMEN_0632PMEN_0631PMEN_0632PMEN_0633
PLUT319225 PLUT_2072PLUT_2072PLUT_2072PLUT_1981
PLUM243265 PLU0645PLU0645PLU4585PLU4584PLU4583
PINT246198 PIN_A2019PIN_A2096PIN_A2019PIN_A0103
PING357804 PING_3241PING_3241PING_3242PING_3241PING_3240
PHAL326442 PSHAA0268PSHAA0268PSHAA0267PSHAA0268PSHAA0269
PGIN242619 PG_1048PG_1048PG_0927PG_1048PG_0412
PFLU220664 PFL_0563PFL_0563PFL_0562PFL_0563PFL_0564
PFLU216595 PFLU0517PFLU6087PFLU0516PFLU0517PFLU0518
PFLU205922 PFL_0520PFL_0520PFL_0519PFL_0520PFL_0521
PENT384676 PSEEN4946PSEEN4946PSEEN4947PSEEN4946PSEEN4945
PDIS435591 BDI_3970BDI_3970BDI_3343BDI_3970BDI_2387
PCAR338963 PCAR_1511PCAR_1511PCAR_1005PCAR_1511PCAR_1304
PATL342610 PATL_3975PATL_3975PATL_3974PATL_3975PATL_3976
PAER208964 PA4947PA4947PA4948PA4947PA4946
PAER208963 PA14_65370PA14_65370PA14_65380PA14_65370PA14_65350
OCAR504832 OCAR_5986OCAR_5986OCAR_4486OCAR_5986OCAR_7241
OANT439375 OANT_2267OANT_2267OANT_0820OANT_2267OANT_3049
NWIN323098 NWI_1719NWI_1719NWI_0046NWI_1719NWI_2548
NSP103690 ALR0092ALR0093ALR2300ALR0093
NOCE323261 NOC_0337NOC_0337NOC_0338NOC_0337NOC_0336
NMUL323848 NMUL_A2532NMUL_A2532NMUL_A2531NMUL_A2532NMUL_A1144
NMEN374833 NMCC_1687NMCC_1687NMCC_1686NMCC_1687NMCC_1353
NMEN272831 NMC1694NMC1694NMC1693NMC1694NMC1378
NMEN122587 NMA2028NMA2028NMA2027NMA2028NMA1655
NMEN122586 NMB_0456NMB_0456NMB_0457NMB_0456NMB_1442
NHAM323097 NHAM_1823NHAM_1823NHAM_0054NHAM_1823NHAM_3169
NGON242231 NGO1502NGO1502NGO1501NGO1502NGO0744
NEUT335283 NEUT_1896NEUT_1896NEUT_1895NEUT_1896NEUT_1828
NEUR228410 NE0656NE0656NE0657NE0656NE1742
NARO279238 SARO_2317SARO_2317SARO_2001SARO_2317SARO_2127
MXAN246197 MXAN_3886MXAN_3886MXAN_3886MXAN_4026
MTHE264732 MOTH_0517MOTH_2296MOTH_2160MOTH_0517MOTH_1114
MSUC221988 MS1515MS1515MS1514MS1515MS1516
MSP409 M446_5842M446_5842M446_0493M446_5842M446_6625
MSP400668 MMWYL1_2635MMWYL1_2635MMWYL1_2636MMWYL1_2635MMWYL1_2634
MSP266779 MESO_1709MESO_1709MESO_3578MESO_1709MESO_0441
MPET420662 MPE_A2027MPE_A2027MPE_A2026MPE_A2027MPE_A2031
MMAR394221 MMAR10_1297MMAR10_1297MMAR10_0082MMAR10_1297MMAR10_0616
MMAG342108 AMB3238AMB3238AMB4249AMB3238AMB4416
MLOT266835 MLR0213MLR0213MLL5086MLR0213MLL8278
MFLA265072 MFLA_1381MFLA_1381MFLA_1380MFLA_1381MFLA_1384
MEXT419610 MEXT_3661MEXT_3661MEXT_4431MEXT_3661MEXT_4265
MCAP243233 MCA_1296MCA_1296MCA_1300MCA_1296MCA_1692
MAQU351348 MAQU_2772MAQU_2772MAQU_2773MAQU_2772MAQU_2771
MAER449447 MAE_55580MAE_55580MAE_09790MAE_55580
LPNE400673 LPC_0437LPC_0437LPC_0436LPC_0437LPC_0438
LPNE297246 LPP2753LPP2753LPP2754LPP2753LPP2752
LPNE297245 LPL2626LPL2626LPL2627LPL2626LPL2625
LPNE272624 LPG2698LPG2698LPG2699LPG2698LPG2697
LCHO395495 LCHO_1129LCHO_1129LCHO_1130LCHO_1129LCHO_1125
KPNE272620 GKPORF_B2566GKPORF_B2097GKPORF_B3924GKPORF_B3925GKPORF_B3926
JSP375286 MMA_0464MMA_0464MMA_0465MMA_0464MMA_0462
JSP290400 JANN_2536JANN_2536JANN_4062JANN_2536JANN_4047
ILOI283942 IL0330IL0330IL0329IL0330IL0331
HSOM228400 HSM_1567HSM_1567HSM_1566HSM_1567HSM_1568
HSOM205914 HS_1082HS_1082HS_1081HS_1082HS_1083
HNEP81032 HNE_0674HNE_0674HNE_1887HNE_0674HNE_0913
HMOD498761 HM1_2720HM1_2720HM1_1717HM1_2720HM1_2583
HINF71421 HI_0066HI_0066HI_0065HI_0066HI_0067
HINF374930 CGSHIEE_02965CGSHIEE_02970CGSHIEE_02965CGSHIEE_02960
HINF281310 NTHI0079NTHI0079NTHI0078NTHI0079NTHI0080
HHAL349124 HHAL_0669HHAL_0669HHAL_0670HHAL_0669HHAL_0668
HDUC233412 HD_0450HD_0450HD_0451HD_0450HD_0743
HCHE349521 HCH_05387HCH_05387HCH_05388HCH_05387HCH_05385
HARS204773 HEAR0408HEAR0408HEAR0409HEAR0408HEAR0406
GURA351605 GURA_2385GURA_2385GURA_2319GURA_2385GURA_1770
GSUL243231 GSU_1821GSU_1821GSU_1800GSU_1821GSU_2001
GOXY290633 GOX1732GOX1732GOX0629GOX1732GOX1252
GMET269799 GMET_1425GMET_1425GMET_1881GMET_1425GMET_2053
GBET391165 GBCGDNIH1_0282GBCGDNIH1_0282GBCGDNIH1_0282GBCGDNIH1_0463
FNUC190304 FN1334FN1334FN0929FN1334FN0462
ESP42895 ENT638_3260ENT638_2956ENT638_0351ENT638_0352ENT638_0353
ELIT314225 ELI_06765ELI_06765ELI_05050ELI_06765ELI_05795
EFER585054 EFER_0253EFER_0737EFER_4221EFER_4222EFER_4223
ECOO157 Z4134AMIAYJEEAMIBMUTL
ECOL83334 ECS3674ECS3306ECS5144ECS5145ECS5146
ECOL585397 ECED1_3273ECED1_2877ECED1_4953ECED1_4954ECED1_4955
ECOL585057 ECIAI39_3236ECIAI39_2580ECIAI39_4632ECIAI39_4633ECIAI39_4634
ECOL585056 ECUMN_3144ECUMN_2756ECUMN_4701ECUMN_4702ECUMN_4703
ECOL585055 EC55989_3093EC55989_2724EC55989_4723EC55989_4724EC55989_4725
ECOL585035 ECS88_3112ECS88_2623ECS88_4754ECS88_4755ECS88_4756
ECOL585034 ECIAI1_2925ECIAI1_2492ECIAI1_4401ECIAI1_4402ECIAI1_4403
ECOL481805 ECOLC_0898ECOLC_1244ECOLC_3845ECOLC_3844ECOLC_3843
ECOL469008 ECBD_0908ECBD_1247ECBD_3866ECBD_3865ECBD_3864
ECOL439855 ECSMS35_3140ECSMS35_2590ECSMS35_4639ECSMS35_4640ECSMS35_4641
ECOL413997 ECB_02665ECB_02335ECB_04035ECB_04036ECB_04037
ECOL409438 ECSE_3074ECSE_2725ECSE_4465ECSE_4466ECSE_4467
ECOL405955 APECO1_3688APECO1_4113APECO1_2223APECO1_2222APECO1_2221
ECOL364106 UTI89_C3218UTI89_C2768UTI89_C4768UTI89_C4769UTI89_C4770
ECOL362663 ECP_2829ECP_2456ECP_4413ECP_4414ECP_4415
ECOL331111 ECE24377A_3137ECE24377A_2721ECE24377A_4725ECE24377A_4727ECE24377A_4728
ECOL316407 ECK2813:JW5449:B2817ECK2430:JW2428:B2435ECK4164:JW4126:B4168ECK4165:JW4127:B4169ECK4166:JW4128:B4170
ECOL199310 C3411C2969C5252C5253C5254
ECAR218491 ECA1000ECA1000ECA3938ECA3937ECA3936
DSHI398580 DSHI_1169DSHI_1169DSHI_3434DSHI_1169DSHI_0363
DRED349161 DRED_0618DRED_2693DRED_2888DRED_2693DRED_1884
DOLE96561 DOLE_1127DOLE_1127DOLE_0774DOLE_1127DOLE_0149
DNOD246195 DNO_0311DNO_0311DNO_0149DNO_0311DNO_1116
DARO159087 DARO_3049DARO_3049DARO_3050DARO_3049DARO_3164
CVIO243365 CV_3822CV_3822CV_3821CV_3822CV_1342
CTEP194439 CT_0054CT_0054CT_0054CT_2028
CSP78 CAUL_2573CAUL_2573CAUL_4849CAUL_2573CAUL_4062
CSP501479 CSE45_2376CSE45_2376CSE45_3370CSE45_2376CSE45_3238
CSAL290398 CSAL_1274CSAL_1274CSAL_1273CSAL_1274CSAL_1275
CPSY167879 CPS_0322CPS_0322CPS_0321CPS_0322CPS_0323
CJAP155077 CJA_3082CJA_3082CJA_3086CJA_3082CJA_3081
CHUT269798 CHU_1164CHU_1164CHU_0750CHU_0014
CDES477974 DAUD_1509DAUD_1509DAUD_2016DAUD_1509DAUD_0554
CCHL340177 CAG_0076CAG_0076CAG_1987CAG_0076CAG_0145
CBUR434922 COXBU7E912_1188COXBU7E912_1188COXBU7E912_1190COXBU7E912_1188COXBU7E912_1186
CBUR360115 COXBURSA331_A0843COXBURSA331_A0843COXBURSA331_A1228COXBURSA331_A0843COXBURSA331_A0845
CBUR227377 CBU_1085CBU_1085CBU_1087CBU_1085CBU_1083
CBLO291272 BPEN_080BPEN_080BPEN_079BPEN_080
CBLO203907 BFL078BFL078BFL077BFL078
CAULO CC1876CC1876CC3534CC1876CC0695
BVIE269482 BCEP1808_2656BCEP1808_2656BCEP1808_2655BCEP1808_2656BCEP1808_0724
BTRI382640 BT_1192BT_1192BT_0030BT_1192BT_0298
BTHE226186 BT_2141BT_2141BT_2207BT_2141
BTHA271848 BTH_I0722BTH_I0722BTH_I0723BTH_I0722BTH_I1320
BSUI470137 BSUIS_A0955BSUIS_A0955BSUIS_A1941BSUIS_A0955BSUIS_B0222
BSUI204722 BR_0915BR_0915BR_2100BR_0915BR_A0218
BSUB BSU24190BSU27580BSU05910BSU24190BSU17050
BSP376 BRADO3513BRADO3513BRADO0080BRADO3513BRADO6079
BSP36773 BCEP18194_A5895BCEP18194_A5895BCEP18194_A5894BCEP18194_A5895BCEP18194_A3853
BSP107806 BU576BU576BU576BU570
BQUI283165 BQ05880BQ05880BQ00270BQ05880BQ02570
BPSE320373 BURPS668_0907BURPS668_0907BURPS668_0908BURPS668_0907BURPS668_3264
BPSE320372 BURPS1710B_A1122BURPS1710B_A1122BURPS1710B_A1123BURPS1710B_A1122BURPS1710B_A3583
BPSE272560 BPSL0859BPSL0859BPSL0860BPSL0859BPSL2814
BPET94624 BPET0830BPET0830BPET0831BPET0830BPET0827
BPER257313 BP0246BP0246BP0247BP0246BP0244
BPAR257311 BPP3621BPP3621BPP3620BPP3621BPP3623
BOVI236 GBOORF0941GBOORF0941GBOORF2094GBOORF0941GBOORFA0215
BMEL359391 BAB1_0931BAB1_0931BAB1_2102BAB1_0931BAB2_0212
BMEL224914 BMEI1056BMEI1056BMEI2026BMEI1056BMEII1026
BMAL320389 BMA10247_0114BMA10247_0114BMA10247_0115BMA10247_0114BMA10247_2192
BMAL320388 BMASAVP1_A0665BMASAVP1_A0665BMASAVP1_A0666BMASAVP1_A0665BMASAVP1_A0514
BMAL243160 BMA_0365BMA_0365BMA_0366BMA_0365BMA_2314
BLIC279010 BL01120BL00842BL01120BL03664
BJAP224911 BLR4306BLR4306BLL0756BLR4306BLR7493
BHEN283166 BH08710BH08710BH08710BH02690
BFRA295405 BF3823BF3823BF0724BF3823
BFRA272559 BF3615BF3615BF0654BF3615
BCLA66692 ABC3295ABC3448ABC0868ABC3448ABC2186
BCIC186490 BCI_0585BCI_0585BCI_0585BCI_0584
BCEN331272 BCEN2424_2563BCEN2424_2563BCEN2424_2562BCEN2424_2563BCEN2424_0765
BCEN331271 BCEN_1952BCEN_1952BCEN_1951BCEN_1952BCEN_0281
BCAN483179 BCAN_A0927BCAN_A0927BCAN_A2145BCAN_A0927BCAN_B0219
BBRO257310 BB4056BB4056BB4055BB4056BB4058
BBAC360095 BARBAKC583_0802BARBAKC583_0802BARBAKC583_1355BARBAKC583_0802BARBAKC583_1201
BAPH198804 BUSG555BUSG555BUSG555BUSG550
BAMY326423 RBAM_022470RBAM_024690RBAM_006360RBAM_016890
BAMB398577 BAMMC406_2482BAMMC406_2482BAMMC406_2481BAMMC406_2482BAMMC406_0685
BAMB339670 BAMB_2611BAMB_2611BAMB_2610BAMB_2611BAMB_0660
BABO262698 BRUAB1_0925BRUAB1_0925BRUAB1_2075BRUAB1_0925BRUAB2_0214
AVAR240292 AVA_1466AVA_1466AVA_0118AVA_1466
ASP76114 EBA4451EBA4451EBA4453EBA4451EBA658
ASP62928 AZO1243AZO1243AZO1244AZO1243AZO3126
ASP232721 AJS_0983AJS_0983AJS_0983AJS_0978
ASAL382245 ASA_3372ASA_3372ASA_3373ASA_3372ASA_3371
APLE434271 APJL_1155APJL_1155APJL_1154APJL_1155APJL_2005
APLE416269 APL_1136APL_1136APL_1135APL_1136APL_1958
AMET293826 AMET_0953AMET_0803AMET_1982AMET_2543
AHYD196024 AHA_0921AHA_0921AHA_0920AHA_0921AHA_0922
AFER243159 AFE_0742AFE_0742AFE_1164AFE_0742AFE_1163
AEHR187272 MLG_0570MLG_0570MLG_0569MLG_0570MLG_0571
ADEH290397 ADEH_1694ADEH_3362ADEH_1503ADEH_1694ADEH_1715
ACRY349163 ACRY_2027ACRY_2027ACRY_1453ACRY_2027ACRY_0628
ACAU438753 AZC_3626AZC_3626AZC_3626AZC_2393
ABOR393595 ABO_2206ABO_2206ABO_2207ABO_2206ABO_2205
ABAU360910 BAV0731BAV0731BAV0732BAV0731BAV0725
ABAC204669 ACID345_1153ACID345_1153ACID345_3281ACID345_1153ACID345_3219
AAVE397945 AAVE_1305AAVE_1305AAVE_1306AAVE_1305AAVE_1300


Organism features enriched in list (features available for 254 out of the 272 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 4.175e-62192
Disease:Bubonic_plague 0.006612566
Disease:Dysentery 0.006612566
Disease:Gastroenteritis 0.00244231113
Endospores:No 2.641e-1646211
Endospores:Yes 0.00017901153
GC_Content_Range4:0-40 6.190e-3624213
GC_Content_Range4:40-60 2.260e-12138224
GC_Content_Range4:60-100 1.540e-892145
GC_Content_Range7:0-30 3.703e-7547
GC_Content_Range7:30-40 2.332e-2519166
GC_Content_Range7:50-60 3.778e-1380107
GC_Content_Range7:60-70 6.443e-1191134
Genome_Size_Range5:0-2 2.122e-2912155
Genome_Size_Range5:2-4 0.007954474197
Genome_Size_Range5:4-6 2.789e-23135184
Genome_Size_Range5:6-10 0.00008113347
Genome_Size_Range9:0-1 0.0009987427
Genome_Size_Range9:1-2 1.324e-258128
Genome_Size_Range9:2-3 0.001846039120
Genome_Size_Range9:4-5 3.390e-117196
Genome_Size_Range9:5-6 1.484e-96488
Genome_Size_Range9:6-8 3.983e-63038
Gram_Stain:Gram_Neg 1.180e-42223333
Gram_Stain:Gram_Pos 1.976e-319150
Habitat:Specialized 0.00017901153
Motility:No 2.405e-1822151
Motility:Yes 1.306e-10154267
Optimal_temp.:25-30 9.400e-81919
Optimal_temp.:35-37 0.00001711313
Optimal_temp.:37 0.007541136106
Oxygen_Req:Anaerobic 0.000018026102
Oxygen_Req:Facultative 0.0003797106201
Salinity:Non-halophilic 0.002577934106
Shape:Coccobacillus 0.00140561011
Shape:Coccus 3.954e-81482
Shape:Rod 9.442e-19202347
Shape:Sphere 0.0017050219
Shape:Spiral 0.0000391434
Temp._range:Mesophilic 0.0004888221473
Temp._range:Thermophilic 0.0005175635



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 198
Effective number of orgs (counting one per cluster within 468 clusters): 168

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WPIP955 Wolbachia pipientis1
WPIP80849 Wolbachia endosymbiont of Brugia malayi1
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TSP28240 Thermotoga sp.1
TROS309801 ncbi Thermomicrobium roseum DSM 51591
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TMAR243274 ncbi Thermotoga maritima MSB81
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX1
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSP84588 ncbi Synechococcus sp. WH 81021
SSP64471 ncbi Synechococcus sp. CC93110
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)1
SSP321327 ncbi Synechococcus sp. JA-3-3Ab1
SSP1131 Synechococcus sp. CC96051
SSOL273057 ncbi Sulfolobus solfataricus P20
SPNE488221 ncbi Streptococcus pneumoniae 705851
SMAR399550 ncbi Staphylothermus marinus F10
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23380
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122281
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SCO ncbi Streptomyces coelicolor A3(2)0
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1221
SARE391037 ncbi Salinispora arenicola CNS-2050
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RSP101510 ncbi Rhodococcus jostii RHA10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RPRO272947 ncbi Rickettsia prowazekii Madrid E1
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP56811 Psychrobacter sp.1
PSP117 Pirellula sp.1
PMOB403833 ncbi Petrotoga mobilis SJ951
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96010
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PCRY335284 ncbi Psychrobacter cryohalolentis K51
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-41
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
NSP35761 Nocardioides sp.0
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
NFAR247156 ncbi Nocardia farcinica IFM 101520
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT1
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1550
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A1
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba1
GVIO251221 ncbi Gloeobacter violaceus PCC 74211
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
ECAN269484 ncbi Ehrlichia canis Jake1
DRAD243230 ncbi Deinococcus radiodurans R11
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA1
CTET212717 ncbi Clostridium tetani E881
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)1
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CPER289380 ncbi Clostridium perfringens SM1011
CPER195103 ncbi Clostridium perfringens ATCC 131241
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEI306537 ncbi Corynebacterium jeikeium K4110
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CCAV227941 ncbi Chlamydophila caviae GPIC1
CBOT36826 Clostridium botulinum A1
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1350
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.0
APHA212042 ncbi Anaplasma phagocytophilum HZ1
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG10
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
AAUR290340 ncbi Arthrobacter aurescens TC10


Names of the homologs of the genes in the group in each of these orgs
  G7458   EG11823   EG11757   EG11363   EG11281   
WPIP955 WD_0509
WPIP80849 WB_0593
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TSP28240 TRQ2_1296
TROS309801 TRD_1668
TPET390874 TPET_1159
TPEN368408
TPAL243276 TP_0875
TMAR243274 TM_1632
TLET416591
TKOD69014
TFUS269800 TFU_2605
TERY203124
TELO197221
TDEN243275 TDE_1469
TACI273075
STRO369723
STOK273063
STHE322159 STER_0376
STHE299768 STR0337
STHE264199 STU0337
SSP84588 SYNW1009OR0038
SSP64471
SSP321332 CYB_1959
SSP321327 CYA_2181
SSP1131 SYNCC9605_1135
SSOL273057
SPNE488221 SP70585_2023
SMAR399550
SERY405948
SEPI176280 SE_0975
SEPI176279 SERP0864
SCO
SAVE227882
SAUR93062 SACOL1316
SAUR426430 NWMN_1205
SAUR418127 SAHV_1286
SAUR367830 SAUSA300_1189
SAUR359787 SAURJH1_1382
SAUR359786
SAUR282459 SAS1230
SAUR282458 SAR1272
SAUR273036 SAB1937C
SARE391037
SACI330779
RSP101510
RSAL288705
RPRO272947 RP880
PTOR263820
PSP56811 PSYCPRWF_0818
PSP117 RB7883
PMOB403833 PMOB_1524
PMAR93060
PMAR74547 PMT0394
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539 PRO_1044
PMAR146891
PISL384616
PHOR70601
PFUR186497
PCRY335284 PCRYO_1496
PAST100379
PARS340102
PARC259536 PSYC_0918
PAER178306
PACN267747
PABY272844
NSP35761
NSEN222891
NPHA348780 NP0536A
NFAR247156
MVAN350058
MTUB419947
MTUB336982
MTHE349307 MTHE_1478
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP189918
MSP164757
MSP164756
MSME246196
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM1682
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MCAP340047
MBUR259564 MBUR_1703
MBOV410289
MBOV233413
MBAR269797 MBAR_A1494
MAVI243243
MART243272
MAEO419665
MACE188937 MA0522
MABS561007
LXYL281090
LLAC272623 L0276
LINT363253 LI0628
LBRE387344 LVIS_0675
LBIF355278 LBF_0024
KRAD266940 KRAD_0729
IHOS453591
HWAL362976 HQ1456A
HSP64091 VNG0159G
HSAL478009 OE1267R
HPYL357544 HPAG1_0757
HPY
HMUK485914 HMUK_0376
HMAR272569 RRNAC2550
HBUT415426
HACI382638 HAC_0641
GVIO251221 GLL2992
FSP1855
FSP106370
FNOD381764
FALN326424
ERUM302409 ERGA_CDS_02100
ERUM254945 ERWE_CDS_02150
ECHA205920 ECH_0884
ECAN269484 ECAJ_0216
DRAD243230 DR_2351
DPSY177439
DGEO319795 DGEO_0053
CVES412965 COSY_0781
CTET212717 CTC_02443
CSUL444179
CRUT413404 RMAG_0856
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809 CPHY_0346
CPER289380 CPR_2132
CPER195103 CPF_2422
CPEL335992 SAR11_0196
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CJEI306537
CGLU196627
CFEL264202 CF0631
CEFF196164
CDIP257309
CCAV227941 CCA_00377
CBOT36826 CBO3320
BXEN266265
BTUR314724
BLON206672
BHER314723
BGAR290434
BBUR224326
BAPH372461
BAFZ390236
AYEL322098
AURANTIMONAS
ASP1667
APHA212042 APH_1344
APER272557
ANAE240017
ALAI441768
AFUL224325
ACEL351607
AAUR290340


Organism features enriched in list (features available for 181 out of the 198 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00003361392
Arrangment:Clusters 0.00065781217
Endospores:No 3.485e-15108211
GC_Content_Range4:0-40 0.000320984213
GC_Content_Range4:40-60 0.000197951224
GC_Content_Range7:0-30 4.490e-62947
GC_Content_Range7:50-60 0.001464021107
GC_Content_Range7:70-100 0.0006280911
Genome_Size_Range5:0-2 9.387e-1384155
Genome_Size_Range5:4-6 8.599e-1322184
Genome_Size_Range9:0-1 3.631e-72127
Genome_Size_Range9:1-2 5.077e-763128
Genome_Size_Range9:4-5 3.298e-61296
Genome_Size_Range9:5-6 2.528e-61088
Gram_Stain:Gram_Neg 4.887e-2053333
Gram_Stain:Gram_Pos 0.002006860150
Habitat:Aquatic 0.00325543991
Habitat:Multiple 6.233e-731178
Habitat:Specialized 0.00003293053
Motility:No 2.745e-1180151
Motility:Yes 7.868e-854267
Optimal_temp.:- 0.000013957257
Optimal_temp.:37 0.002026745106
Optimal_temp.:85 0.009078844
Oxygen_Req:Anaerobic 0.000080548102
Oxygen_Req:Facultative 7.546e-640201
Pathogenic_in:Human 0.003699753213
Pathogenic_in:No 0.004633483226
Shape:Branched_filament 0.009078844
Shape:Irregular_coccus 1.079e-61517
Shape:Rod 9.501e-1467347
Shape:Sphere 1.596e-61619
Temp._range:Hyperthermophilic 2.082e-82023
Temp._range:Mesophilic 5.124e-6127473
Temp._range:Thermophilic 0.00062292035



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GLYCOCAT-PWY (glycogen degradation I)2462140.7058
PWY-1269 (CMP-KDO biosynthesis I)3252450.6680
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3002340.6673
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951790.6551
NAGLIPASYN-PWY (lipid IVA biosynthesis)3482500.6392
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181890.6366
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251900.6183
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491450.6066
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2912200.6030
PWY-5918 (heme biosynthesis I)2722110.6019
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2962210.5947
PWY-4041 (γ-glutamyl cycle)2792130.5935
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2862160.5919
GLUTATHIONESYN-PWY (glutathione biosynthesis)3392360.5718
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2902140.5670
TYRFUMCAT-PWY (tyrosine degradation I)1841600.5652
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831590.5621
PWY-5913 (TCA cycle variation IV)3012180.5608
PWY-5028 (histidine degradation II)1301270.5594
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222640.5521
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3292280.5469
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911600.5377
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3982510.5204
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761490.5187
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551900.5178
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491860.5107
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491860.5107
PWY-5669 (phosphatidylethanolamine biosynthesis I)4162540.4973
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3652340.4904
AST-PWY (arginine degradation II (AST pathway))1201120.4892
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911530.4886
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561330.4847
REDCITCYC (TCA cycle variation II)1741430.4835
PWY-5340 (sulfate activation for sulfonation)3852400.4790
GLUCONSUPER-PWY (D-gluconate degradation)2291710.4767
DAPLYSINESYN-PWY (lysine biosynthesis I)3422220.4727
PWY0-862 (cis-dodecenoyl biosynthesis)3432220.4701
PWY-5386 (methylglyoxal degradation I)3052050.4651
P344-PWY (acrylonitrile degradation)2101590.4609
PWY-5148 (acyl-CoA hydrolysis)2271670.4566
PWY0-501 (lipoate biosynthesis and incorporation I)3852360.4523
CHOLINE-BETAINE-ANA-PWY (choline degradation I)1351150.4404
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96910.4400
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)1121010.4391
PWY-5938 ((R)-acetoin biosynthesis I)3762300.4356
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))1381160.4345
PLPSAL-PWY (pyridoxal 5'-phosphate salvage pathway)3742290.4342
PWY-5084 (2-ketoglutarate dehydrogenase complex)3262090.4320
GALACTCAT-PWY (D-galactonate degradation)104950.4304
P601-PWY (D-camphor degradation)95890.4278
PWY-46 (putrescine biosynthesis III)1381150.4267
PWY-3162 (tryptophan degradation V (side chain pathway))94880.4246
SO4ASSIM-PWY (sulfate reduction I (assimilatory))3112010.4221
PWY-6389 ((S)-acetoin biosynthesis)3682240.4169
GALACTARDEG-PWY (D-galactarate degradation I)1511210.4159
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001950.4147
PWY-6087 (4-chlorocatechol degradation)2231570.4026



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11823   EG11757   EG11363   EG11281   
G74580.9999840.9996970.9999810.999508
EG118230.9996790.9999770.999462
EG117570.9997960.99955
EG113630.99966
EG11281



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PAIRWISE BLAST SCORES:

  G7458   EG11823   EG11757   EG11363   EG11281   
G74580.0f03.3e-52-3.5e-44-
EG118234.6e-460.0f0-3.0e-33-
EG11757--0.0f0--
EG113632.7e-382.1e-32-0.0f0-
EG11281----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11281 EG11363 EG11757 (centered at EG11363)
G7458 (centered at G7458)
EG11823 (centered at EG11823)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7458   EG11823   EG11757   EG11363   EG11281   
305/623307/623410/623308/623415/623
AAEO224324:0:Tyes00-0-
AAVE397945:0:Tyes55650
ABAC204669:0:Tyes00214102079
ABAU360910:0:Tyes66760
ABOR393595:0:Tyes11210
ABUT367737:0:Tyes00-0-
ACAU438753:0:Tyes12451245-12450
ACRY349163:8:Tyes1407140782314070
ADEH290397:0:Tyes19818820198219
AEHR187272:0:Tyes11012
AFER243159:0:Tyes004180417
AHYD196024:0:Tyes11012
AMAR234826:0:Tyes--682-0
AMAR329726:9:Tyes00---
AMET293826:0:Tyes-145011451697
AORE350688:0:Tyes--989-0
APHA212042:0:Tyes--0--
APLE416269:0:Tyes1101864
APLE434271:0:Tno1101898
ASAL382245:5:Tyes11210
ASP232721:2:Tyes55-50
ASP62928:0:Tyes00101908
ASP62977:0:Tyes--1-0
ASP76114:2:Tyes22202220222122200
AVAR240292:3:Tyes1357135701357-
BABO262698:0:Tno----0
BABO262698:1:Tno0011130-
BAMB339670:3:Tno20032003200220030
BAMB398577:3:Tno18261826182518260
BAMY326423:0:Tyes160918310-1052
BANT260799:0:Tno--0-3393
BANT261594:2:Tno--0-3333
BANT568206:2:Tyes--0-399
BANT592021:2:Tno--0-3537
BAPH198804:0:Tyes66-60
BBAC264462:0:Tyes00-0-
BBAC360095:0:Tyes005130364
BBRO257310:0:Tyes11013
BCAN483179:0:Tno----0
BCAN483179:1:Tno0011770-
BCEN331271:2:Tno16961696169516960
BCEN331272:3:Tyes17951795179417950
BCER226900:1:Tyes--0-3409
BCER288681:0:Tno--0-3321
BCER315749:1:Tyes--0-2047
BCER405917:1:Tyes--0-3320
BCER572264:1:Tno--0-3450
BCIC186490:0:Tyes11-10
BCLA66692:0:Tyes24542608026081335
BFRA272559:1:Tyes2899289902899-
BFRA295405:0:Tno3142314203142-
BHAL272558:0:Tyes-0335-2186
BHEN283166:0:Tyes568568-5680
BJAP224911:0:Fyes35663566035666780
BLIC279010:0:Tyes-2209022091283
BMAL243160:1:Tno00101720
BMAL320388:1:Tno1511511521510
BMAL320389:1:Tyes00102029
BMEL224914:0:Tno----0
BMEL224914:1:Tno009820-
BMEL359391:0:Tno----0
BMEL359391:1:Tno0010710-
BOVI236:0:Tyes----0
BOVI236:1:Tyes009820-
BPAR257311:0:Tno11013
BPER257313:0:Tyes22320
BPET94624:0:Tyes33430
BPSE272560:1:Tyes00101972
BPSE320372:1:Tno00102339
BPSE320373:1:Tno00102262
BPUM315750:0:Tyes-18710-1095
BQUI283165:0:Tyes5035030503210
BSP107806:2:Tyes66-60
BSP36773:2:Tyes20852085208420850
BSP376:0:Tyes32443244032445698
BSUB:0:Tyes19252274019251179
BSUI204722:0:Tyes----0
BSUI204722:1:Tyes0011440-
BSUI470137:0:Tno----0
BSUI470137:1:Tno009590-
BTHA271848:1:Tno0010590
BTHE226186:0:Tyes00660-
BTHU281309:1:Tno--0-3245
BTHU412694:1:Tno--0-3021
BTRI382640:1:Tyes1029102901029230
BVIE269482:7:Tyes19121912191119120
BWEI315730:4:Tyes--0-3268
CABO218497:0:Tyes0--0-
CACE272562:1:Tyes--1012-0
CAULO:0:Tyes11991199288611990
CBEI290402:0:Tyes--27902344
CBLO203907:0:Tyes1101-
CBLO291272:0:Tno1101-
CBOT36826:1:Tno--0--
CBOT441770:0:Tyes--1586-0
CBOT441771:0:Tno--1449-0
CBOT441772:1:Tno--1616-0
CBOT498213:1:Tno--1598-0
CBOT508765:1:Tyes--0-1271
CBOT515621:2:Tyes--1569-0
CBOT536232:0:Tno--1723-0
CBUR227377:1:Tyes22420
CBUR360115:1:Tno0035202
CBUR434922:2:Tno22320
CCAV227941:1:Tyes---0-
CCHL340177:0:Tyes001922070
CCON360104:2:Tyes00-0-
CCUR360105:0:Tyes00-0-
CDES477974:0:Tyes94394314489430
CDIF272563:1:Tyes--02659-
CFEL264202:1:Tyes---0-
CFET360106:0:Tyes00-0-
CHOM360107:1:Tyes00-0-
CHUT269798:0:Tyes11311131-7290
CHYD246194:0:Tyes178817880--
CJAP155077:0:Tyes11510
CJEJ192222:0:Tyes00-0-
CJEJ195099:0:Tno00-0-
CJEJ354242:2:Tyes00-0-
CJEJ360109:0:Tyes00-0-
CJEJ407148:0:Tno00-0-
CKLU431943:1:Tyes--0-803
CMUR243161:1:Tyes00-0-
CNOV386415:0:Tyes0-1737--
CPEL335992:0:Tyes--0--
CPER195102:1:Tyes--1017-0
CPER195103:0:Tno--0--
CPER289380:3:Tyes--0--
CPHY357809:0:Tyes--0--
CPRO264201:0:Fyes--96-0
CPSY167879:0:Tyes11012
CRUT413404:0:Tyes--0--
CSAL290398:0:Tyes11012
CSP501479:7:Fyes--131-0
CSP501479:8:Fyes00-0-
CSP78:2:Tyes00230501519
CTEP194439:0:Tyes00-01946
CTET212717:0:Tyes--0--
CTRA471472:0:Tyes0--0-
CTRA471473:0:Tno0--0-
CVES412965:0:Tyes--0--
CVIO243365:0:Tyes25392539253825390
DARO159087:0:Tyes0010115
DDES207559:0:Tyes0---2126
DETH243164:0:Tyes--0-766
DGEO319795:1:Tyes--0--
DHAF138119:0:Tyes--2404-0
DNOD246195:0:Tyes1561560156933
DOLE96561:0:Tyes9949946449940
DRAD243230:3:Tyes--0--
DRED349161:0:Tyes02082227620821262
DSHI398580:5:Tyes82282231108220
DSP216389:0:Tyes--0-655
DSP255470:0:Tno--0-675
DVUL882:1:Tyes-1876-18760
ECAN269484:0:Tyes----0
ECAR218491:0:Tyes00298029792978
ECHA205920:0:Tyes----0
ECOL199310:0:Tno4350224922502251
ECOL316407:0:Tno3670170617071708
ECOL331111:6:Tno3920191819191921
ECOL362663:0:Tno3770194619471948
ECOL364106:1:Tno4470198119821983
ECOL405955:2:Tyes4420191419151916
ECOL409438:6:Tyes3610179617971798
ECOL413997:0:Tno3390173617371738
ECOL439855:4:Tno5250195919601961
ECOL469008:0:Tno0349294129402939
ECOL481805:0:Tno0358295629552954
ECOL585034:0:Tno4240185318541855
ECOL585035:0:Tno4730204320442045
ECOL585055:0:Tno3680195519561957
ECOL585056:2:Tno3940193119321933
ECOL585057:0:Tno6760206520662067
ECOL585397:0:Tno3970202920302031
ECOL83334:0:Tno3840190219031904
ECOLI:0:Tno3880176017611762
ECOO157:0:Tno3890187318741875
EFAE226185:3:Tyes--0-2089
EFER585054:1:Tyes0479392439253926
ELIT314225:0:Tyes3513510351155
ERUM254945:0:Tyes----0
ERUM302409:0:Tno----0
ESP42895:1:Tyes29412628012
FJOH376686:0:Tyes--273443990
FMAG334413:1:Tyes--480-0
FNUC190304:0:Tyes8728724678720
FPHI484022:1:Tyes--296-0
FRANT:0:Tno--0-109
FSUC59374:0:Tyes22220--
FTUL351581:0:Tno--0-237
FTUL393011:0:Tno--0-195
FTUL393115:0:Tyes--0-107
FTUL401614:0:Tyes--0-300
FTUL418136:0:Tno--106-0
FTUL458234:0:Tno--0-212
GBET391165:0:Tyes00-0181
GFOR411154:0:Tyes842-982-0
GKAU235909:1:Tyes--030851099
GMET269799:1:Tyes004630638
GOXY290633:5:Tyes1094109401094620
GSUL243231:0:Tyes2121021200
GTHE420246:1:Tyes--0-940
GURA351605:0:Tyes6196195536190
GVIO251221:0:Tyes--0--
HACI382638:1:Tyes0----
HARS204773:0:Tyes22320
HAUR316274:2:Tyes--1997-0
HCHE349521:0:Tyes22320
HDUC233412:0:Tyes0010246
HHAL349124:0:Tyes11210
HHEP235279:0:Tyes00-0-
HINF281310:0:Tyes11012
HINF374930:0:Tyes1-210
HINF71421:0:Tno11012
HMAR272569:8:Tyes----0
HMOD498761:0:Tyes1026102601026890
HMUK485914:1:Tyes----0
HNEP81032:0:Tyes0011910237
HPYL357544:1:Tyes---0-
HPYL85963:0:Tno0--0-
HSAL478009:4:Tyes----0
HSOM205914:1:Tyes11012
HSOM228400:0:Tno11012
HSP64091:2:Tno----0
HWAL362976:1:Tyes----0
ILOI283942:0:Tyes11012
JSP290400:1:Tyes00154801533
JSP375286:0:Tyes22320
KPNE272620:2:Tyes4570177417751776
KRAD266940:2:Fyes--0--
LACI272621:0:Tyes--321-0
LBIF355278:2:Tyes--0--
LBIF456481:2:Tno2098-0--
LBOR355276:1:Tyes-0-01521
LBOR355277:1:Tno-308-3080
LBRE387344:2:Tyes--0--
LCAS321967:1:Tyes--0-1204
LCHO395495:0:Tyes44540
LDEL321956:0:Tyes--0-780
LDEL390333:0:Tyes--0-712
LGAS324831:0:Tyes--840-0
LHEL405566:0:Tyes--296-0
LINN272626:1:Tno--768-0
LINT189518:1:Tyes-2277-22770
LINT267671:1:Tno-0-01741
LINT363253:3:Tyes----0
LJOH257314:0:Tyes--257-0
LLAC272622:5:Tyes--0-1906
LLAC272623:0:Tyes----0
LMES203120:1:Tyes--0-44
LMON169963:0:Tno--701-0
LMON265669:0:Tyes--682-0
LPLA220668:0:Tyes--0-1279
LPNE272624:0:Tno11210
LPNE297245:1:Fno11210
LPNE297246:1:Fyes11210
LPNE400673:0:Tno11012
LREU557436:0:Tyes--0-128
LSAK314315:0:Tyes--1016-0
LSPH444177:1:Tyes---21210
LWEL386043:0:Tyes-114679-0
MACE188937:0:Tyes----0
MAER449447:0:Tyes4620462004620-
MAQU351348:2:Tyes11210
MBAR269797:1:Tyes----0
MBUR259564:0:Tyes----0
MCAP243233:0:Tyes0040377
MEXT419610:0:Tyes007700602
MFLA265072:0:Tyes11014
MLOT266835:2:Tyes00379106399
MMAG342108:0:Tyes00101101178
MMAR394221:0:Tyes1211121101211531
MMAZ192952:0:Tyes----0
MPET420662:1:Tyes11015
MSP266779:3:Tyes12801280315212800
MSP400668:0:Tyes11210
MSP409:2:Tyes51345134051345899
MSUC221988:0:Tyes11012
MTHE264732:0:Tyes0173616020581
MTHE349307:0:Tyes----0
MXAN246197:0:Tyes00-0137
NARO279238:0:Tyes3203200320128
NEUR228410:0:Tyes00101097
NEUT335283:2:Tyes676766670
NGON242231:0:Tyes6796796786790
NHAM323097:2:Tyes17081708017082999
NMEN122586:0:Tno0010950
NMEN122587:0:Tyes3783783773780
NMEN272831:0:Tno2682682672680
NMEN374833:0:Tno3293293283290
NMUL323848:3:Tyes13741374137313740
NOCE323261:1:Tyes11210
NPHA348780:2:Tyes----0
NSP103690:6:Tyes0122301-
NSP387092:0:Tyes00-0-
NWIN323098:0:Tyes16941694016942533
OANT439375:4:Tyes----0
OANT439375:5:Tyes1488148801488-
OCAR504832:0:Tyes15011501015012753
OIHE221109:0:Tyes--0-1004
OTSU357244:0:Fyes--118-0
PAER208963:0:Tyes11210
PAER208964:0:Tno11210
PARC259536:0:Tyes--0--
PATL342610:0:Tyes11012
PCAR338963:0:Tyes5105100510296
PCRY335284:1:Tyes--0--
PDIS435591:0:Tyes1580158095515800
PENT384676:0:Tyes11210
PFLU205922:0:Tyes11012
PFLU216595:1:Tyes15378012
PFLU220664:0:Tyes11012
PGIN242619:0:Tyes5615614565610
PHAL326442:1:Tyes11012
PING357804:0:Tyes11210
PINT246198:1:Tyes1910-198719100
PLUM243265:0:Fyes00400540044003
PLUT319225:0:Tyes9191-910
PMAR167539:0:Tyes-0---
PMAR74547:0:Tyes-0---
PMEN399739:0:Tyes11012
PMOB403833:0:Tyes--0--
PMUL272843:1:Tyes11012
PNAP365044:8:Tyes131314130
PPEN278197:0:Tyes--0-749
PPRO298386:2:Tyes11210
PPUT160488:0:Tno11210
PPUT351746:0:Tyes11210
PPUT76869:0:Tno11210
PRUM264731:0:Tyes--1812-0
PSP117:0:Tyes----0
PSP296591:2:Tyes110111
PSP312153:0:Tyes0010-
PSP56811:2:Tyes--0--
PSTU379731:0:Tyes11210
PSYR205918:0:Tyes11012
PSYR223283:2:Tyes11210
PTHE370438:0:Tyes01091379-1005
RAKA293614:0:Fyes--0-1223
RALB246199:0:Tyes--2170-0
RBEL336407:0:Tyes--0-103
RBEL391896:0:Fno--0-1378
RCAN293613:0:Fyes--0-1108
RCAS383372:0:Tyes--604-0
RCON272944:0:Tno--0-1384
RDEN375451:4:Tyes20162016-20160
RETL347834:5:Tyes1603160301603810
REUT264198:3:Tyes11012205
REUT381666:2:Tyes11012400
RFEL315456:2:Tyes--0-1404
RFER338969:1:Tyes11016
RLEG216596:6:Tyes1735173501735904
RMAS416276:1:Tyes--0-959
RMET266264:2:Tyes11012370
RPAL258594:0:Tyes23822382023824321
RPAL316055:0:Tyes2492249202492949
RPAL316056:0:Tyes24712471024711005
RPAL316057:0:Tyes22572257022573862
RPAL316058:0:Tyes24062406024063573
RPOM246200:1:Tyes0012570758
RPRO272947:0:Tyes----0
RRIC392021:0:Fno--0-1352
RRIC452659:0:Tyes--0-1390
RRUB269796:1:Tyes0012840795
RSOL267608:1:Tyes001024
RSP357808:0:Tyes--0-188
RSPH272943:4:Tyes14941494014942655
RSPH349101:2:Tno14591459014592603
RSPH349102:5:Tyes00109201070
RTYP257363:0:Tno--0-856
RXYL266117:0:Tyes--512-0
SACI56780:0:Tyes004530880
SAGA205921:0:Tno--0-1546
SAGA208435:0:Tno--0-1699
SAGA211110:0:Tyes--0-1684
SALA317655:1:Tyes30393039030391479
SAUR158878:1:Tno--794-0
SAUR158879:1:Tno--787-0
SAUR196620:0:Tno--836-0
SAUR273036:0:Tno--0--
SAUR282458:0:Tno----0
SAUR282459:0:Tno----0
SAUR359787:1:Tno----0
SAUR367830:3:Tno----0
SAUR418127:0:Tyes----0
SAUR426430:0:Tno----0
SAUR93061:0:Fno--992-0
SAUR93062:1:Tno----0
SBAL399599:3:Tyes11210
SBAL402882:1:Tno11210
SBOY300268:1:Tyes2290173217311730
SDEG203122:0:Tyes11210
SDEN318161:0:Tyes11210
SDYS300267:1:Tyes3710165016491648
SELO269084:0:Tyes6376370--
SENT209261:0:Tno23690381838193820
SENT220341:0:Tno4130186718681869
SENT295319:0:Tno23430360936103611
SENT321314:2:Tno4880182118221823
SENT454169:2:Tno4700197019711972
SEPI176279:1:Tyes----0
SEPI176280:0:Tno----0
SFLE198214:0:Tyes3380181118121813
SFLE373384:0:Tno3900175117521753
SFUM335543:0:Tyes00142401177
SGLO343509:3:Tyes16681668012
SGOR29390:0:Tyes--0-1469
SHAE279808:0:Tyes-3430-670
SHAL458817:0:Tyes11210
SHIGELLA:0:Tno3460177817791780
SLAC55218:1:Fyes1459145901459271
SLOI323850:0:Tyes11012
SMED366394:3:Tyes52752727845270
SMEL266834:2:Tyes1315131501315795
SMUT210007:0:Tyes--0-1557
SONE211586:1:Tyes11012
SPEA398579:0:Tno11210
SPNE1313:0:Tyes--1651-0
SPNE170187:0:Tyes--1625-0
SPNE171101:0:Tno--1631-0
SPNE487213:0:Tno--1571-0
SPNE487214:0:Tno--1732-0
SPNE488221:0:Tno--0--
SPRO399741:1:Tyes34363082012
SPYO160490:0:Tno--0-295
SPYO186103:0:Tno--0-354
SPYO193567:0:Tno--0-1467
SPYO198466:0:Tno--0-297
SPYO286636:0:Tno--0-342
SPYO293653:0:Tno--0-334
SPYO319701:0:Tyes--0-329
SPYO370551:0:Tno--0-343
SPYO370552:0:Tno--0-336
SPYO370553:0:Tno--0-342
SPYO370554:0:Tyes--0-367
SRUB309807:1:Tyes767-6907670
SSAP342451:2:Tyes--0-674
SSED425104:0:Tyes11012
SSON300269:1:Tyes4290172417251726
SSP1131:0:Tyes-0---
SSP1148:0:Tyes06601402660-
SSP292414:2:Tyes77777727877770
SSP321327:0:Tyes0----
SSP321332:0:Tyes--0--
SSP387093:0:Tyes10-1-
SSP644076:5:Fyes00-0-
SSP644076:6:Fyes--0-315
SSP84588:0:Tyes-0---
SSP94122:1:Tyes11012
SSUI391295:0:Tyes--1837-0
SSUI391296:0:Tyes--1843-0
STHE264199:0:Tyes--0--
STHE292459:0:Tyes--1213-0
STHE299768:0:Tno--0--
STHE322159:2:Tyes--0--
STYP99287:1:Tyes5370189218931894
SWOL335541:0:Tyes--16860811
TCRU317025:0:Tyes11012
TDEN243275:0:Tyes--0--
TDEN292415:0:Tyes22-20
TDEN326298:0:Tyes00-0-
TFUS269800:0:Tyes--0--
TMAR243274:0:Tyes--0--
TPAL243276:0:Tyes--0--
TPET390874:0:Tno--0--
TPSE340099:0:Tyes16101429161876
TROS309801:1:Tyes----0
TSP1755:0:Tyes42928204291100
TSP28240:0:Tyes--0--
TTEN273068:0:Tyes--01797786
TTHE262724:1:Tyes00---
TTHE300852:2:Tyes00---
TTUR377629:0:Tyes11210
VCHO:0:Tyes11012
VCHO345073:1:Tno11012
VEIS391735:1:Tyes00102501
VFIS312309:2:Tyes11210
VPAR223926:1:Tyes11210
VVUL196600:2:Tyes11210
VVUL216895:1:Tno11012
WPIP80849:0:Tyes----0
WPIP955:0:Tyes----0
WSUC273121:0:Tyes00-0-
XAUT78245:1:Tyes16311631-16310
XAXO190486:0:Tyes11210
XCAM190485:0:Tyes11210
XCAM314565:0:Tno11012
XCAM316273:0:Tno11210
XCAM487884:0:Tno11012
XFAS160492:2:Tno11012
XFAS183190:1:Tyes11210
XFAS405440:0:Tno11210
XORY291331:0:Tno11210
XORY342109:0:Tyes11210
XORY360094:0:Tno22024
YENT393305:1:Tyes28372837012
YPES187410:5:Tno25522552012
YPES214092:3:Tno624624012
YPES349746:2:Tno24642464210
YPES360102:3:Tyes00347634753474
YPES377628:2:Tno00329328327
YPES386656:2:Tno00193219311930
YPSE273123:2:Tno26372637012
YPSE349747:2:Tno00263726362635
ZMOB264203:0:Tyes009270161



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