CANDIDATE ID: 214

CANDIDATE ID: 214

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9965970e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    8.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7402 (nrdI) (b2674)
   Products of gene:
     - G7402-MONOMER (flavodoxin involved in diferric-tyrosyl radical cofactor maintenance for ribonucleotide reductase)

- G7401 (nrdH) (b2673)
   Products of gene:
     - G7401-MONOMER (glutaredoxin-like protein)

- EG20257 (nrdE) (b2675)
   Products of gene:
     - NRDE-MONOMER (NrdE)
     - NRDE-CPLX (ribonucleoside-diphosphate reductase 2, α subunit dimer)
     - RIBONUCLEOSIDE-DIP-REDUCTII-CPLX (ribonucleoside-diphosphate reductase 2)
       Reactions:
        CDP + an oxidized NrdH glutaredoxin-like protein  ->  dCDP + a reduced NrdH glutaredoxin-like protein + H2O
         In pathways
         PWY0-166 (pyrimidine deoxyribonucleotides de novo biosynthesis I)
         PWY-6545 (PWY-6545)
        GDP + a reduced NrdH glutaredoxin-like protein  ->  2'-deoxyguanosine-5'-diphosphate + an oxidized NrdH glutaredoxin-like protein + H2O
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I)
         PWY-6125 (guanosine nucleotides de novo biosynthesis)
        ADP + a reduced NrdH glutaredoxin-like protein  ->  2'-deoxyadenosine-5'-diphosphate + an oxidized NrdH glutaredoxin-like protein + H2O
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I)
         PWY-6126 (adenosine nucleotides de novo biosynthesis)
        UDP + a reduced NrdH glutaredoxin-like protein  ->  dUDP + an oxidized NrdH glutaredoxin-like protein + H2O
         In pathways
         PWY0-166 (pyrimidine deoxyribonucleotides de novo biosynthesis I)
         PWY-6545 (PWY-6545)
        a reduced electron acceptor + a ribonucleoside diphosphate  ->  an oxidized electron acceptor + a 2'-deoxyribonucleoside diphosphate + H2O

- EG12381 (nrdF) (b2676)
   Products of gene:
     - NRDF-MONOMER (NrdF)
     - NRDF-CPLX (ribonucleoside-diphosphate reductase 2, β subunit dimer)
     - RIBONUCLEOSIDE-DIP-REDUCTII-CPLX (ribonucleoside-diphosphate reductase 2)
       Reactions:
        CDP + an oxidized NrdH glutaredoxin-like protein  ->  dCDP + a reduced NrdH glutaredoxin-like protein + H2O
         In pathways
         PWY0-166 (pyrimidine deoxyribonucleotides de novo biosynthesis I)
         PWY-6545 (PWY-6545)
        GDP + a reduced NrdH glutaredoxin-like protein  ->  2'-deoxyguanosine-5'-diphosphate + an oxidized NrdH glutaredoxin-like protein + H2O
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I)
         PWY-6125 (guanosine nucleotides de novo biosynthesis)
        ADP + a reduced NrdH glutaredoxin-like protein  ->  2'-deoxyadenosine-5'-diphosphate + an oxidized NrdH glutaredoxin-like protein + H2O
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I)
         PWY-6126 (adenosine nucleotides de novo biosynthesis)
        UDP + a reduced NrdH glutaredoxin-like protein  ->  dUDP + an oxidized NrdH glutaredoxin-like protein + H2O
         In pathways
         PWY0-166 (pyrimidine deoxyribonucleotides de novo biosynthesis I)
         PWY-6545 (PWY-6545)
        a reduced electron acceptor + a ribonucleoside diphosphate  ->  an oxidized electron acceptor + a 2'-deoxyribonucleoside diphosphate + H2O

- EG10660 (nrdA) (b2234)
   Products of gene:
     - NRDA-MONOMER (NrdA)
     - B1-CPLX (B1 protein)
     - RIBONUCLEOSIDE-DIP-REDUCTI-CPLX (ribonucleoside-diphosphate reductase [multifunctional])
       Reactions:
        a reduced electron acceptor + a ribonucleoside diphosphate  ->  an oxidized electron acceptor + a 2'-deoxyribonucleoside diphosphate + H2O
        CDP + a reduced thioredoxin  ->  dCDP + an oxidized thioredoxin + H2O
         In pathways
         PWY0-166 (pyrimidine deoxyribonucleotides de novo biosynthesis I)
         PWY-6545 (PWY-6545)
        UDP + a reduced thioredoxin  ->  dUDP + an oxidized thioredoxin + H2O
         In pathways
         PWY0-166 (pyrimidine deoxyribonucleotides de novo biosynthesis I)
         PWY-6545 (PWY-6545)
        ADP + a reduced thioredoxin  ->  2'-deoxyadenosine-5'-diphosphate + an oxidized thioredoxin + H2O
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I)
         PWY-6126 (adenosine nucleotides de novo biosynthesis)
        GDP + a reduced thioredoxin  ->  2'-deoxyguanosine-5'-diphosphate + an oxidized thioredoxin + H2O
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I)
         PWY-6125 (guanosine nucleotides de novo biosynthesis)



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 154
Effective number of orgs (counting one per cluster within 468 clusters): 82

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
STHE322159 ncbi Streptococcus thermophilus LMD-95
STHE299768 ncbi Streptococcus thermophilus CNRZ10665
STHE264199 ncbi Streptococcus thermophilus LMG 183115
SSUI391296 ncbi Streptococcus suis 98HAH334
SSUI391295 ncbi Streptococcus suis 05ZYH335
SSP644076 Silicibacter sp. TrichCH4B5
SSP292414 ncbi Ruegeria sp. TM10405
SSON300269 ncbi Shigella sonnei Ss0464
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153054
SPYO370554 ncbi Streptococcus pyogenes MGAS107504
SPYO370553 ncbi Streptococcus pyogenes MGAS20965
SPYO370552 ncbi Streptococcus pyogenes MGAS102705
SPYO370551 ncbi Streptococcus pyogenes MGAS94295
SPYO319701 ncbi Streptococcus pyogenes MGAS61805
SPYO293653 ncbi Streptococcus pyogenes MGAS50055
SPYO286636 ncbi Streptococcus pyogenes MGAS103945
SPYO198466 ncbi Streptococcus pyogenes MGAS3155
SPYO193567 ncbi Streptococcus pyogenes SSI-15
SPYO186103 ncbi Streptococcus pyogenes MGAS82325
SPYO160490 ncbi Streptococcus pyogenes M1 GAS5
SPRO399741 ncbi Serratia proteamaculans 5685
SPNE488221 ncbi Streptococcus pneumoniae 705855
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-65
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-145
SPNE171101 ncbi Streptococcus pneumoniae R65
SPNE1313 Streptococcus pneumoniae5
SMUT210007 ncbi Streptococcus mutans UA1595
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14354
SGOR29390 Streptococcus gordonii Challis5
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122284
SEPI176279 ncbi Staphylococcus epidermidis RP62A4
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SDYS300267 ncbi Shigella dysenteriae Sd1975
SBOY300268 ncbi Shigella boydii Sb2275
SAUR93062 ncbi Staphylococcus aureus aureus COL4
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83254
SAUR426430 ncbi Staphylococcus aureus aureus Newman4
SAUR418127 ncbi Staphylococcus aureus aureus Mu34
SAUR367830 Staphylococcus aureus aureus USA3004
SAUR359787 ncbi Staphylococcus aureus aureus JH14
SAUR359786 ncbi Staphylococcus aureus aureus JH94
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4764
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2524
SAUR273036 ncbi Staphylococcus aureus RF1224
SAUR196620 ncbi Staphylococcus aureus aureus MW24
SAUR158879 ncbi Staphylococcus aureus aureus N3154
SAUR158878 ncbi Staphylococcus aureus aureus Mu504
SAGA211110 ncbi Streptococcus agalactiae NEM3165
SAGA208435 ncbi Streptococcus agalactiae 2603V/R5
SAGA205921 ncbi Streptococcus agalactiae A9095
RSP101510 ncbi Rhodococcus jostii RHA15
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332095
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38415
RETL347834 ncbi Rhizobium etli CFN 425
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257455
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO15
OANT439375 ncbi Ochrobactrum anthropi ATCC 491884
NFAR247156 ncbi Nocardia farcinica IFM 101525
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-15
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra5
MTUB336982 ncbi Mycobacterium tuberculosis F115
MTBRV ncbi Mycobacterium tuberculosis H37Rv5
MTBCDC ncbi Mycobacterium tuberculosis CDC15515
MSP189918 ncbi Mycobacterium sp. KMS5
MSP164757 ncbi Mycobacterium sp. JLS5
MSP164756 ncbi Mycobacterium sp. MCS5
MSME246196 ncbi Mycobacterium smegmatis MC2 1555
MPNE272634 ncbi Mycoplasma pneumoniae M1294
MLEP272631 ncbi Mycobacterium leprae TN5
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK5
MGEN243273 ncbi Mycoplasma genitalium G374
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P25
MBOV233413 ncbi Mycobacterium bovis AF2122/975
MAVI243243 ncbi Mycobacterium avium 1045
MABS561007 ncbi Mycobacterium abscessus ATCC 199775
LSPH444177 ncbi Lysinibacillus sphaericus C3-414
LSAK314315 ncbi Lactobacillus sakei sakei 23K5
LREU557436 ncbi Lactobacillus reuteri DSM 200165
LPLA220668 ncbi Lactobacillus plantarum WCFS14
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82935
LLAC272623 ncbi Lactococcus lactis lactis Il14034
LLAC272622 ncbi Lactococcus lactis cremoris SK115
LHEL405566 ncbi Lactobacillus helveticus DPC 45714
LCAS321967 ncbi Lactobacillus casei ATCC 3345
LBRE387344 ncbi Lactobacillus brevis ATCC 3674
KRAD266940 ncbi Kineococcus radiotolerans SRS302165
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
ESP42895 Enterobacter sp.5
EFER585054 ncbi Escherichia fergusonii ATCC 354695
EFAE226185 ncbi Enterococcus faecalis V5835
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DRAD243230 ncbi Deinococcus radiodurans R15
DGEO319795 ncbi Deinococcus geothermalis DSM 113004
CSP501479 Citreicella sp. SE455
CSAL290398 ncbi Chromohalobacter salexigens DSM 30435
CJEI306537 ncbi Corynebacterium jeikeium K4115
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130325
CEFF196164 ncbi Corynebacterium efficiens YS-3145
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131295
BTRI382640 ncbi Bartonella tribocorum CIP 1054765
BSUI470137 ncbi Brucella suis ATCC 234455
BSUI204722 ncbi Brucella suis 13305
BSUB ncbi Bacillus subtilis subtilis 1684
BQUI283165 ncbi Bartonella quintana Toulouse5
BOVI236 Brucella ovis4
BMEL359391 ncbi Brucella melitensis biovar Abortus 23085
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M5
BLON206672 ncbi Bifidobacterium longum NCC27054
BHEN283166 ncbi Bartonella henselae Houston-15
BCLA66692 ncbi Bacillus clausii KSM-K164
BCER226900 ncbi Bacillus cereus ATCC 145794
BCAN483179 ncbi Brucella canis ATCC 233655
BBAC360095 ncbi Bartonella bacilliformis KC5835
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9415
ASP1667 Arthrobacter sp.5
ANAE240017 Actinomyces oris MG15
ALAI441768 ncbi Acholeplasma laidlawii PG-8A4
AAUR290340 ncbi Arthrobacter aurescens TC15


Names of the homologs of the genes in the group in each of these orgs
  G7402   G7401   EG20257   EG12381   EG10660   
YPSE349747 YPSIP31758_1064YPSIP31758_1065YPSIP31758_1063YPSIP31758_1062YPSIP31758_2769
YPSE273123 YPTB2956YPTB2955YPTB2957YPTB2958YPTB1254
YPES386656 YPDSF_1622YPDSF_1623YPDSF_1624YPDSF_4071
YPES377628 YPN_1136YPN_1137YPN_1135YPN_1134YPN_2763
YPES360102 YPA_2378YPA_2379YPA_2377YPA_2376YPA_0928
YPES349746 YPANGOLA_A3539YPANGOLA_A3540YPANGOLA_A3538YPANGOLA_A3537YPANGOLA_A1313
YPES214092 YPO2650YPO2651YPO2649YPO2648YPO1214
YPES187410 Y1225Y1223Y1222Y2974
YENT393305 YE0928YE0929YE0927YE0926YE1393
STYP99287 STM2806STM2805STM2807STM2808STM2277
STHE322159 STER_0199STER_1247STER_1248STER_1249STER_1248
STHE299768 STR0144STR1269STR1270STR1271STR1270
STHE264199 STU0144STU1269STU1270STU1271STU1270
SSUI391296 SSU98_2141SSU98_1222SSU98_1224SSU98_1222
SSUI391295 SSU05_2139SSU05_1206SSU05_1207SSU05_1209SSU05_1207
SSP644076 SCH4B_2459SCH4B_2458SCH4B_2460SCH4B_2461SCH4B_2460
SSP292414 TM1040_0520TM1040_0521TM1040_0519TM1040_0518TM1040_0519
SSON300269 SSO_2818SSO_2820SSO_2821SSO_2293
SSAP342451 SSP1987SSP1986SSP1985SSP1986
SPYO370554 MGAS10750_SPY0350MGAS10750_SPY1226MGAS10750_SPY0349MGAS10750_SPY0351
SPYO370553 MGAS2096_SPY0367MGAS2096_SPY1187MGAS2096_SPY0368MGAS2096_SPY0366MGAS2096_SPY0368
SPYO370552 MGAS10270_SPY0347MGAS10270_SPY1192MGAS10270_SPY0348MGAS10270_SPY0346MGAS10270_SPY0348
SPYO370551 MGAS9429_SPY0351MGAS9429_SPY1169MGAS9429_SPY1170MGAS9429_SPY0350MGAS9429_SPY0352
SPYO319701 M28_SPY0335M28_SPY1115M28_SPY1116M28_SPY0334M28_SPY0336
SPYO293653 M5005_SPY0348M5005_SPY1122M5005_SPY1123M5005_SPY0347M5005_SPY0349
SPYO286636 M6_SPY0373M6_SPY1096M6_SPY1097M6_SPY0372M6_SPY0374
SPYO198466 SPYM3_0302SPYM3_1048SPYM3_1049SPYM3_0301SPYM3_0303
SPYO193567 SPS1555SPS0813SPS1554SPS1556SPS1554
SPYO186103 SPYM18_0471SPYM18_1386SPYM18_1387SPYM18_0470SPYM18_0472
SPYO160490 SPY0426SPY1374SPY1375SPY0425SPY0427
SPRO399741 SPRO_3722SPRO_3721SPRO_3723SPRO_3724SPRO_3271
SPNE488221 SP70585_0232SP70585_1231SP70585_1232SP70585_1233SP70585_1232
SPNE487214 SPH_0271SPH_1299SPH_1300SPH_1301SPH_1300
SPNE487213 SPT_0205SPT_1045SPT_1044SPT_1043SPT_1044
SPNE171101 SPR0156SPR1064SPR1065SPR1066SPR1065
SPNE1313 SPJ_0187SPJ_1097SPJ_1098SPJ_1099SPJ_1098
SMUT210007 SMU_1777SMU_669CSMU_668CSMU_667SMU_668C
SHIGELLA NRDINRDHNRDENRDFNRDA
SHAE279808 SH2163SH2162SH2161SH2162
SGOR29390 SGO_0098SGO_1557SGO_1558SGO_1559SGO_1558
SFLE373384 SFV_2829SFV_2830SFV_2828SFV_2827SFV_2307
SFLE198214 AAN44195.1AAN44194.1AAN44196.1AAN44197.1AAN43831.1
SEPI176280 SE_0512SE_0513SE_0514SE_0513
SEPI176279 SERP0396SERP0397SERP0398SERP0397
SENT454169 SEHA_C2989SEHA_C2988SEHA_C2990SEHA_C2991SEHA_C2517
SENT321314 SCH_2740SCH_2739SCH_2741SCH_2742SCH_2280
SENT295319 SPA2664SPA2663SPA2665SPA0586SPA0587
SENT220341 STY2931STY2930STY2932STY2933STY2506
SENT209261 T2703T2702T2704T2705T0587
SDYS300267 SDY_2867SDY_2866SDY_2868SDY_2869SDY_2428
SBOY300268 SBO_2843SBO_2844SBO_2842SBO_2841SBO_2060
SAUR93062 SACOL0791SACOL0792SACOL0793SACOL0792
SAUR93061 SAOUHSC_00741SAOUHSC_00742SAOUHSC_00743SAOUHSC_00742
SAUR426430 NWMN_0699NWMN_0700NWMN_0701NWMN_0700
SAUR418127 SAHV_0727SAHV_0728SAHV_0729SAHV_0728
SAUR367830 SAUSA300_0715SAUSA300_0716SAUSA300_0717SAUSA300_0716
SAUR359787 SAURJH1_0771SAURJH1_0772SAURJH1_0773SAURJH1_0772
SAUR359786 SAURJH9_0754SAURJH9_0755SAURJH9_0756SAURJH9_0755
SAUR282459 SAS0695SAS0696SAS0697SAS0696
SAUR282458 SAR0784SAR0785SAR0786SAR0785
SAUR273036 SAB0681SAB0682SAB0683SAB0682
SAUR196620 MW0692MW0693MW0694MW0693
SAUR158879 SA0685SA0686SA0687SA0686
SAUR158878 SAV0730SAV0731SAV0732SAV0731
SAGA211110 GBS0454GBS0838GBS0837GBS0453GBS0455
SAGA208435 SAG_0419SAG_0820SAG_0819SAG_0418SAG_0420
SAGA205921 SAK_0500SAK_0944SAK_0943SAK_0499SAK_0501
RSP101510 RHA1_RO06440RHA1_RO06439RHA1_RO06441RHA1_RO06442RHA1_RO06441
RSAL288705 RSAL33209_0419RSAL33209_3481RSAL33209_3483RSAL33209_3484RSAL33209_3483
RLEG216596 RL4260RL4261RL4259RL4258RL4259
RETL347834 RHE_CH03717RHE_CH03718RHE_CH03716RHE_CH03715RHE_CH03716
PPEN278197 PEPE_0344PEPE_1487PEPE_1488PEPE_1489PEPE_1488
PLUM243265 PLU1286PLU1287PLU1285PLU1284PLU3052
OANT439375 OANT_2953OANT_2952OANT_2954OANT_2955
NFAR247156 NFA43080NFA43090NFA43070NFA42980NFA43070
MVAN350058 MVAN_2041MVAN_2040MVAN_2042MVAN_2060MVAN_2042
MTUB419947 MRA_3084MRA_3085MRA_3083MRA_3080MRA_3083
MTUB336982 TBFG_13068TBFG_13069TBFG_13067TBFG_13064TBFG_13067
MTBRV RV3052CRV3053CRV3051CRV3048CRV3051C
MTBCDC MT3138MT3139MT3137MT3133MT3137
MSP189918 MKMS_1863MKMS_1862MKMS_1864MKMS_1875MKMS_1864
MSP164757 MJLS_1797MJLS_1796MJLS_1798MJLS_1809MJLS_1798
MSP164756 MMCS_1816MMCS_1815MMCS_1817MMCS_1828MMCS_1817
MSME246196 MSMEG_2298MSMEG_2297MSMEG_2299MSMEG_2313MSMEG_2299
MPNE272634 MPN323MPN324MPN322MPN324
MLEP272631 ML1735ML1736ML1734ML1731ML1734
MGIL350054 MFLV_4306MFLV_4307MFLV_4305MFLV_4286MFLV_4305
MGEN243273 MG_230MG_231MG_229MG_231
MBOV410289 BCG_3076CBCG_3077CBCG_3075CBCG_3072CBCG_3075C
MBOV233413 MB3078CMB3079CMB3077CMB3074CMB3077C
MAVI243243 MAV_3920MAV_3921MAV_3919MAV_3913MAV_3919
MABS561007 MAB_3414CMAB_3415CMAB_3413CMAB_3404CMAB_3413C
LSPH444177 BSPH_1842BSPH_1843BSPH_1844BSPH_1843
LSAK314315 LSA0023LSA0942LSA0941LSA0940LSA0941
LREU557436 LREU_1762LREU_0324LREU_0323LREU_0322LREU_0323
LPLA220668 LP_2673LP_0694LP_0693LP_0692
LMES203120 LEUM_0255LEUM_0253LEUM_0254LEUM_0256LEUM_0254
LLAC272623 L4702L0294L0295L0294
LLAC272622 LACR_1062LACR_1063LACR_1061LACR_1060LACR_1061
LHEL405566 LHV_1899LHV_1898LHV_1900LHV_1898
LCAS321967 LSEI_0757LSEI_1467LSEI_1468LSEI_1469LSEI_1468
LBRE387344 LVIS_0104LVIS_0597LVIS_0596LVIS_0595
KRAD266940 KRAD_0804KRAD_0803KRAD_0805KRAD_0806KRAD_0805
KPNE272620 GKPORF_B2332GKPORF_B2331GKPORF_B2333GKPORF_B2334GKPORF_B1944
ESP42895 ENT638_3154ENT638_3153ENT638_3155ENT638_3156ENT638_2801
EFER585054 EFER_0396EFER_0397EFER_0395EFER_0394EFER_0931
EFAE226185 EF_0472EF_0473EF_0471EF_0470EF_0471
ECOO157 NRDINRDHNRDENRDFNRDA
ECOL83334 ECS3537ECS3536ECS3538ECS3539ECS3117
ECOL585397 ECED1_3129ECED1_3128ECED1_3130ECED1_3131ECED1_2700
ECOL585057 ECIAI39_2864ECIAI39_2863ECIAI39_2865ECIAI39_2866ECIAI39_2376
ECOL585056 ECUMN_3000ECUMN_2999ECUMN_3001ECUMN_3002ECUMN_2571
ECOL585055 EC55989_2942EC55989_2941EC55989_2943EC55989_2944EC55989_2482
ECOL585035 ECS88_2940ECS88_2939ECS88_2941ECS88_2942ECS88_2382
ECOL585034 ECIAI1_2770ECIAI1_2769ECIAI1_2771ECIAI1_2772ECIAI1_2312
ECOL481805 ECOLC_1032ECOLC_1033ECOLC_1031ECOLC_1030ECOLC_1417
ECOL469008 ECBD_1045ECBD_1046ECBD_1044ECBD_1043ECBD_1426
ECOL439855 ECSMS35_2796ECSMS35_2795ECSMS35_2797ECSMS35_2798ECSMS35_2385
ECOL413997 ECB_02530ECB_02529ECB_02531ECB_02532ECB_02160
ECOL409438 ECSE_2927ECSE_2926ECSE_2928ECSE_2929ECSE_2495
ECOL405955 APECO1_3847APECO1_3846APECO1_3845APECO1_4326
ECOL364106 UTI89_C3034UTI89_C3033UTI89_C3035UTI89_C3036UTI89_C2515
ECOL362663 ECP_2639ECP_2638ECP_2640ECP_2641ECP_2277
ECOL331111 ECE24377A_2955ECE24377A_2954ECE24377A_2956ECE24377A_2957ECE24377A_2531
ECOL316407 ECK2668:JW2649:B2674ECK2667:JW2648:B2673ECK2669:JW2650:B2675ECK2670:JW2651:B2676ECK2226:JW2228:B2234
ECOL199310 C3227C3226C3228C3229C2776
ECAR218491 ECA3336ECA3335ECA3337ECA3338ECA1199
DRAD243230 DR_B0107DR_2085DR_B0108DR_B0109DR_B0108
DGEO319795 DGEO_1773DGEO_1508DGEO_1774DGEO_1775
CSP501479 CSE45_1223CSE45_1222CSE45_1224CSE45_1225CSE45_1224
CSAL290398 CSAL_0378CSAL_0377CSAL_0379CSAL_0380CSAL_0668
CJEI306537 JK0226JK0476JK0478JK0480JK0478
CGLU196627 CG2787CG2789CG2786CG2781CG2786
CEFF196164 CE2424CE2425CE2423CE2419CE2423
CDIP257309 DIP1868DIP1869DIP1867DIP1865DIP1867
BTRI382640 BT_0211BT_0210BT_0212BT_0213BT_0212
BSUI470137 BSUIS_B0321BSUIS_B0320BSUIS_B0322BSUIS_B0323BSUIS_B0322
BSUI204722 BR_A0315BR_A0314BR_A0316BR_A0317BR_A0316
BSUB BSU17370BSU17380BSU17390BSU17380
BQUI283165 BQ01810BQ01800BQ01820BQ01830BQ01820
BOVI236 GBOORFA0322GBOORFA0323GBOORFA0324GBOORFA0323
BMEL359391 BAB2_0890BAB2_0891BAB2_0889BAB2_0888BAB2_0889
BMEL224914 BMEII0931BMEII0932BMEII0930BMEII0929BMEII0930
BLON206672 BL0669BL0668BL0670BL0671
BHEN283166 BH01930BH01920BH01940BH01950BH01940
BCLA66692 ABC3107ABC3108ABC3109ABC3108
BCER226900 BC_1353BC_1354BC_1355BC_1354
BCAN483179 BCAN_B0316BCAN_B0315BCAN_B0317BCAN_B0318BCAN_B0317
BBAC360095 BARBAKC583_0355BARBAKC583_0354BARBAKC583_0356BARBAKC583_0358BARBAKC583_0356
BABO262698 BRUAB2_0866BRUAB2_0867BRUAB2_0865BRUAB2_0864BRUAB2_0865
ASP1667 ARTH_2357ARTH_2358ARTH_2356ARTH_2355ARTH_2356
ANAE240017 ANA_2278ANA_2277ANA_2279ANA_2285ANA_2279
ALAI441768 ACL_1291ACL_1290ACL_1289ACL_1290
AAUR290340 AAUR_2340AAUR_2341AAUR_2339AAUR_2338AAUR_2339


Organism features enriched in list (features available for 144 out of the 154 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00005863892
Arrangment:Clusters 1.309e-91617
Arrangment:Pairs 1.917e-1055112
Disease:Brucellosis 0.000871955
Disease:Bubonic_plague 0.000209766
Disease:Dysentery 0.000209766
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 1.552e-71111
Disease:Urinary_tract_infection 0.003605944
Disease:Wide_range_of_infections 1.552e-71111
Disease:endocarditis 0.003605944
Endospores:No 2.259e-1084211
Endospores:Yes 0.0023842553
GC_Content_Range7:30-40 0.002031954166
GC_Content_Range7:40-50 0.005277319117
GC_Content_Range7:50-60 0.000014744107
Genome_Size_Range5:0-2 0.001151925155
Genome_Size_Range5:4-6 0.000139863184
Genome_Size_Range9:4-5 0.00039673796
Gram_Stain:Gram_Neg 3.243e-659333
Gram_Stain:Gram_Pos 2.397e-2081150
Habitat:Aquatic 1.669e-11191
Habitat:Host-associated 3.472e-776206
Habitat:Specialized 0.0006795453
Motility:No 9.125e-862151
Motility:Yes 0.000042946267
Optimal_temp.:- 0.000118345257
Optimal_temp.:30-37 1.647e-71518
Optimal_temp.:37 1.382e-646106
Oxygen_Req:Aerobic 0.000724231185
Oxygen_Req:Anaerobic 1.212e-103102
Oxygen_Req:Facultative 2.064e-24101201
Pathogenic_in:Human 6.456e-1795213
Pathogenic_in:No 3.015e-829226
Salinity:Non-halophilic 0.000166341106
Shape:Coccus 4.396e-165282
Temp._range:Mesophilic 6.771e-9138473
Temp._range:Thermophilic 0.0025566235



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 224
Effective number of orgs (counting one per cluster within 468 clusters): 203

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM41
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WPIP955 Wolbachia pipientis1
WPIP80849 Wolbachia endosymbiont of Brugia malayi1
VFIS312309 ncbi Vibrio fischeri ES1141
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TCRU317025 ncbi Thiomicrospira crunogena XCL-21
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STOK273063 ncbi Sulfolobus tokodaii 70
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPNE170187 ncbi Streptococcus pneumoniae G541
SMEL266834 ncbi Sinorhizobium meliloti 10210
SMED366394 ncbi Sinorhizobium medicae WSM4190
SMAR399550 ncbi Staphylothermus marinus F10
SLAC55218 Ruegeria lacuscaerulensis0
SHAL458817 ncbi Shewanella halifaxensis HAW-EB41
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SALA317655 ncbi Sphingopyxis alaskensis RB22561
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington1
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170250
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170290
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.10
RSP357808 ncbi Roseiflexus sp. RS-10
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111700
RRIC452659 ncbi Rickettsia rickettsii Iowa1
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith1
RPRO272947 ncbi Rickettsia prowazekii Madrid E1
RPOM246200 ncbi Ruegeria pomeroyi DSS-30
RPAL316058 ncbi Rhodopseudomonas palustris HaA20
RPAL316057 ncbi Rhodopseudomonas palustris BisB50
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RPAL258594 ncbi Rhodopseudomonas palustris CGA0090
RMAS416276 ncbi Rickettsia massiliae MTU51
RFEL315456 ncbi Rickettsia felis URRWXCal21
RDEN375451 ncbi Roseobacter denitrificans OCh 1141
RCON272944 ncbi Rickettsia conorii Malish 71
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RCAN293613 ncbi Rickettsia canadensis McKiel1
RBEL391896 ncbi Rickettsia bellii OSU 85-3891
RBEL336407 ncbi Rickettsia bellii RML369-C1
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford1
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PMUL272843 ncbi Pasteurella multocida multocida Pm701
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PING357804 ncbi Psychromonas ingrahamii 371
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
NSP35761 Nocardioides sp.0
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP409 Methylobacterium sp.0
MSED399549 ncbi Metallosphaera sedula DSM 53480
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLOT266835 ncbi Mesorhizobium loti MAFF3030990
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHUN323259 ncbi Methanospirillum hungatei JF-10
MEXT419610 ncbi Methylobacterium extorquens PA10
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
JSP290400 ncbi Jannaschia sp. CCS10
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSOM228400 ncbi Haemophilus somnus 23361
HSOM205914 ncbi Haemophilus somnus 129PT1
HNEP81032 Hyphomonas neptunium1
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HINF281310 ncbi Haemophilus influenzae 86-028NP1
HHAL349124 ncbi Halorhodospira halophila SL10
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GURA351605 ncbi Geobacter uraniireducens Rf40
GSUL243231 ncbi Geobacter sulfurreducens PCA0
GOXY290633 ncbi Gluconobacter oxydans 621H1
GMET269799 ncbi Geobacter metallireducens GS-150
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
ECAN269484 ncbi Ehrlichia canis Jake1
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DRED349161 ncbi Desulfotomaculum reducens MI-10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DHAF138119 ncbi Desulfitobacterium hafniense Y510
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
DARO159087 ncbi Dechloromonas aromatica RCB0
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA1
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)1
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29010
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CBOT441771 ncbi Clostridium botulinum A str. Hall1
CAULO ncbi Caulobacter crescentus CB151
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1350
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSP376 Bradyrhizobium sp.0
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1100
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62928 ncbi Azoarcus sp. BH720
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL031
APLE416269 ncbi Actinobacillus pleuropneumoniae L201
APHA212042 ncbi Anaplasma phagocytophilum HZ1
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
AMET293826 ncbi Alkaliphilus metalliredigens QYMF1
AMAR234826 ncbi Anaplasma marginale St. Maries1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACRY349163 ncbi Acidiphilium cryptum JF-51
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
ACAU438753 ncbi Azorhizobium caulinodans ORS 5710
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3450


Names of the homologs of the genes in the group in each of these orgs
  G7402   G7401   EG20257   EG12381   EG10660   
ZMOB264203 ZMO0443
XAUT78245
WPIP955 WD_0212
WPIP80849 WB_0417
VFIS312309 VF1202
UURE95667
UURE95664
UPAR505682
UMET351160
TVOL273116
TTHE300852
TTHE262724
TTEN273068
TSP28240
TSP1755
TPSE340099
TPET390874
TPEN368408
TMAR243274
TLET416591
TKOD69014
TERY203124
TELO197221
TCRU317025 TCR_0463
TACI273075
SWOL335541
STOK273063
SSP84588
SSP64471
SSP321332
SSP321327
SSP1131
SSOL273057
SRUB309807
SPNE170187 SPN08020
SMEL266834
SMED366394
SMAR399550
SLAC55218
SHAL458817 SHAL_2036
SFUM335543
SELO269084
SALA317655 SALA_1775
SACI56780
SACI330779
RXYL266117
RTYP257363 RT0497
RSPH349102
RSPH349101
RSPH272943
RSP357808
RRUB269796
RRIC452659 RRIOWA_0779
RRIC392021 A1G_03685
RPRO272947 RP512
RPOM246200
RPAL316058
RPAL316057
RPAL316055
RPAL258594
RMAS416276 RMA_0657
RFEL315456 RF_0710
RDEN375451 RD1_0396
RCON272944 RC0651
RCAS383372
RCAN293613 A1E_02965
RBEL391896 A1I_04765
RBEL336407 RBE_0732
RALB246199
RAKA293614 A1C_03485
PTOR263820
PTHE370438
PSP117
PRUM264731
PMUL272843 PM0717
PMOB403833
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PING357804 PING_1112
PHOR70601
PGIN242619
PFUR186497
PDIS435591
PCAR338963
PARS340102
PAER178306
PABY272844
NSP35761
NSP103690
NSEN222891 NSE_0520
NPHA348780
MTHE349307
MTHE264732
MTHE187420
MSTA339860
MSP409
MSED399549
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MMAG342108
MLOT266835
MLAB410358
MKAN190192
MJAN243232
MHUN323259
MEXT419610
MBUR259564
MBAR269797
MART243272
MAEO419665
MACE188937
LINT267671
LINT189518
LDEL390333
LDEL321956
LBOR355277
LBOR355276
LBIF456481
LBIF355278
JSP290400
IHOS453591
HWAL362976
HSOM228400 HSM_0366
HSOM205914 HS_1196
HNEP81032 HNE_0373
HMUK485914
HMOD498761
HMAR272569
HINF281310 NTHI1961
HHAL349124
HBUT415426
GVIO251221
GURA351605
GSUL243231
GOXY290633 GOX1994
GMET269799
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855
FSP106370
FRANT
FPHI484022
FNOD381764
FALN326424
ERUM302409 ERGA_CDS_03290
ERUM254945 ERWE_CDS_03340
ECHA205920 ECH_0766
ECAN269484 ECAJ_0310
DVUL882
DSP255470
DSP216389
DSHI398580
DRED349161
DPSY177439
DOLE96561
DNOD246195
DHAF138119
DETH243164
DDES207559
DARO159087
CVES412965 COSY_0479
CTET212717
CTEP194439
CSUL444179
CSP78
CRUT413404 RMAG_0523
CPEL335992 SAR11_1158
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CHYD246194
CDES477974
CCHL340177
CBOT441771 CLC_2689
CAULO CC3492
BXEN266265
BTUR314724
BTHE226186
BSP376
BJAP224911
BHER314723
BGAR290434
BBUR224326
BAPH372461
BAFZ390236
AVAR240292
AURANTIMONAS
ASP76114
ASP62928
APLE434271 APJL_1009
APLE416269 APL_0992
APHA212042 APH_0560
APER272557
AORE350688
AMET293826 AMET_4326
AMAR234826 AM483
AFUL224325
ADEH290397
ACRY349163 ACRY_0738
ACEL351607 ACEL_1724
ACAU438753
ABAC204669


Organism features enriched in list (features available for 204 out of the 224 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.009345279
Arrangment:Chains 0.00054611992
Arrangment:Pairs 1.843e-717112
Disease:Tularemia 0.005079655
Endospores:Yes 0.00842051153
Genome_Size_Range5:0-2 3.046e-780155
Genome_Size_Range5:4-6 3.848e-641184
Genome_Size_Range9:1-2 1.172e-770128
Genome_Size_Range9:5-6 0.00001191488
Gram_Stain:Gram_Pos 1.679e-1219150
Habitat:Aquatic 7.792e-105891
Habitat:Host-associated 8.888e-649206
Habitat:Multiple 0.001917748178
Habitat:Specialized 1.043e-63553
Motility:No 0.007772942151
Optimal_temp.:37 1.060e-715106
Oxygen_Req:Anaerobic 4.752e-1672102
Oxygen_Req:Facultative 1.906e-1135201
Pathogenic_in:Animal 0.00201331366
Pathogenic_in:Human 7.013e-1533213
Pathogenic_in:No 9.079e-13119226
Salinity:Non-halophilic 0.000214122106
Shape:Coccus 0.00251231882
Shape:Irregular_coccus 1.127e-81717
Shape:Oval 0.005079655
Shape:Rod 6.752e-697347
Temp._range:Hyperthermophilic 6.649e-102223
Temp._range:Mesophilic 2.081e-15129473
Temp._range:Thermophilic 5.332e-62535



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 3
Effective number of orgs (counting one per cluster within 468 clusters): 3

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
MGEN243273 ncbi Mycoplasma genitalium G37 0.0000744684
MPNE272634 ncbi Mycoplasma pneumoniae M129 0.0002777944
MLEP272631 ncbi Mycobacterium leprae TN 0.00401224745


Names of the homologs of the genes in the group in each of these orgs
  G7402   G7401   EG20257   EG12381   EG10660   
MGEN243273 MG_230MG_231MG_229MG_231
MPNE272634 MPN323MPN324MPN322MPN324
MLEP272631 ML1735ML1736ML1734ML1731ML1734


Organism features enriched in list (features available for 3 out of the 3 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Atypical_pneumonia_in_older_children_and_young_adults 0.005145811
Disease:Leprosy 0.005145811
Genome_Size_Range9:0-1 0.0059397227
Optimal_temp.:37 0.00587173106
Salinity:Non-halophilic 0.00587173106
Shape:Sphere 0.0029353219



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
P441-PWY (superpathway of N-acetylneuraminate degradation)63530.4619
PWY-922 (mevalonate pathway I)1991060.4534
GLCMANNANAUT-PWY (superpathway of N-acetylglucosamine, N-acetylmannosamine and N-acetylneuraminate degradation)134830.4517
PWY0-1324 (N-acetylneuraminate and N-acetylmannosamine degradation)135830.4482
RHAMCAT-PWY (rhamnose degradation)91630.4268
SUCUTIL-PWY (sucrose degradation I)124750.4133
MANNIDEG-PWY (mannitol degradation I)99650.4125



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7401   EG20257   EG12381   EG10660   
G74020.999480.9996980.9996710.999457
G74010.9996280.9995230.999361
EG202570.9999280.99998
EG123810.999871
EG10660



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PAIRWISE BLAST SCORES:

  G7402   G7401   EG20257   EG12381   EG10660   
G74020.0f0----
G7401-0.0f0---
EG20257--0.0f0--
EG12381---0.0f0-
EG10660--1.0e-34-0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- PWY0-166 (pyrimidine deoxyribonucleotides de novo biosynthesis I) (degree of match pw to cand: 0.250, degree of match cand to pw: 0.800, average score: 0.671)
  Genes in pathway or complex:
             0.7251 0.3857 EG11418 (dcd) DCTP-DEAM-MONOMER (Dcd)
             0.6107 0.2686 EG10251 (dut) DUTP-PYROP-MONOMER (Dut)
             0.9301 0.9139 G7164 (nudI) G7164-MONOMER (pyrimidine deoxynucleoside triphosphate pyrophosphohydrolase)
             0.8286 0.5217 EG11002 (thyA) THYMIDYLATESYN-MONOMER (thymidylate synthase)
             0.6441 0.3208 EG12302 (tmk) DTMPKI-MONOMER (dTMP kinase)
             0.8669 0.5443 EG10650 (ndk) NUCLEOSIDE-DIP-KIN-MONOMER (Ndk)
             0.9996 0.9989 EG10661 (nrdB) NRDB-MONOMER (NrdB)
   *in cand* 0.9997 0.9994 EG10660 (nrdA) NRDA-MONOMER (NrdA)
   *in cand* 0.9998 0.9995 EG12381 (nrdF) NRDF-MONOMER (NrdF)
   *in cand* 0.9998 0.9996 EG20257 (nrdE) NRDE-MONOMER (NrdE)
             0.5813 0.0674 EG11417 (nrdD) RIBONUCLEOSIDE-TRIP-REDUCT-MONOMER (ribonucleoside-triphosphate reductase)
             0.6611 0.2237 EG10318 (fldA) OX-FLAVODOXIN1 (oxidized flavodoxin 1)
             0.9534 0.8837 EG12697 (fldB) OX-FLAVODOXIN2 (oxidized flavodoxin 2)
   *in cand* 0.9996 0.9994 G7401 (nrdH) G7401-MONOMER (glutaredoxin-like protein)
             0.3621 0.2092 EG11031 (trxA) OX-THIOREDOXIN-MONOMER (oxidized thioredoxin)
             0.9387 0.8399 EG11887 (trxC) OX-THIOREDOXIN2-MONOMER (oxidized thioredoxin 2)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9995 G7402 (nrdI) G7402-MONOMER (flavodoxin involved in diferric-tyrosyl radical cofactor maintenance for ribonucleotide reductase)

- DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I) (degree of match pw to cand: 0.118, degree of match cand to pw: 0.800, average score: 0.570)
  Genes in pathway or complex:
             0.5842 0.4255 EG11809 (purT) GARTRANSFORMYL2-MONOMER (phosphoribosylglycinamide formyltransferase 2)
             0.9262 0.7882 EG10798 (purM) AIRS-MONOMER (PurM)
             0.8038 0.5106 EG10797 (purL) FGAMSYN-MONOMER (phosphoribosylformylglycinamide synthetase)
             0.2123 0.0028 EG10792 (purD) GLYCRIBONUCSYN-MONOMER (phosphoribosylamine-glycine ligase)
             0.6657 0.4728 EG10794 (purF) PRPPAMIDOTRANS-MONOMER (PurF)
             0.3358 0.1099 EG10796 (purK) PURK-MONOMER (N5-carboxyaminoimidazole ribonucleotide synthetase monomer)
             0.4524 0.1456 EG10793 (purE) PURE-MONOMER (PurE)
             0.3758 0.1436 EG10795 (purH) AICARTRANSIMPCYCLO-CPLX (AICAR transformylase / IMP cyclohydrolase)
             0.7975 0.6581 EG10791 (purC) SAICARSYN-MONOMER (PurC)
             0.2153 0.0685 EG10965 (gmk) GUANYL-KIN-MONOMER (Gmk)
             0.9305 0.8166 EG10420 (guaA) GMP-SYN-MONOMER (GMP synthetase)
             0.9268 0.8641 EG10421 (guaB) IMP-DEHYDROG-MONOMER (GuaB)
             0.2702 0.1230 EG10100 (atpC) ATPC-MONOMER (ATP synthase, F1 complex, ε subunit)
             0.2869 0.0936 EG10105 (atpH) ATPH-MONOMER (ATP synthase, F1 complex, δ subunit)
             0.3155 0.1411 EG10098 (atpA) ATPA-MONOMER (ATP synthase, F1 complex, α subunit)
             0.2334 0.0539 EG10104 (atpG) ATPG-MONOMER (ATP synthase, F1 complex, γ subunit)
             0.3708 0.1477 EG10101 (atpD) ATPD-MONOMER (ATP synthase, F1 complex, β subunit)
             0.2607 0.0654 EG10102 (atpE) ATPE-MONOMER (ATP synthase, F0 complex, c subunit)
             0.2841 0.0774 EG10103 (atpF) ATPF-MONOMER (ATP synthase, F0 complex, b subunit)
             0.1749 0.0028 EG10099 (atpB) ATPB-MONOMER (ATP synthase, F0 complex, a subunit)
             0.8669 0.5443 EG10650 (ndk) NUCLEOSIDE-DIP-KIN-MONOMER (Ndk)
   *in cand* 0.9998 0.9995 EG12381 (nrdF) NRDF-MONOMER (NrdF)
   *in cand* 0.9998 0.9996 EG20257 (nrdE) NRDE-MONOMER (NrdE)
             0.5813 0.0674 EG11417 (nrdD) RIBONUCLEOSIDE-TRIP-REDUCT-MONOMER (ribonucleoside-triphosphate reductase)
             0.9996 0.9989 EG10661 (nrdB) NRDB-MONOMER (NrdB)
   *in cand* 0.9997 0.9994 EG10660 (nrdA) NRDA-MONOMER (NrdA)
             0.2786 0.1098 EG10032 (adk) ADENYL-KIN-MONOMER (adenylate kinase)
             0.5120 0.0583 EG11314 (purB) ASL-MONOMER (5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole lyase [multifunctional])
             0.3175 0.1338 EG10790 (purA) ADENYLOSUCCINATE-SYN-MONOMER (PurA)
   *in cand* 0.9996 0.9994 G7401 (nrdH) G7401-MONOMER (glutaredoxin-like protein)
             0.6611 0.2237 EG10318 (fldA) OX-FLAVODOXIN1 (oxidized flavodoxin 1)
             0.9534 0.8837 EG12697 (fldB) OX-FLAVODOXIN2 (oxidized flavodoxin 2)
             0.3621 0.2092 EG11031 (trxA) OX-THIOREDOXIN-MONOMER (oxidized thioredoxin)
             0.9387 0.8399 EG11887 (trxC) OX-THIOREDOXIN2-MONOMER (oxidized thioredoxin 2)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9995 G7402 (nrdI) G7402-MONOMER (flavodoxin involved in diferric-tyrosyl radical cofactor maintenance for ribonucleotide reductase)

- PWY-6126 (adenosine nucleotides de novo biosynthesis) (degree of match pw to cand: 0.182, degree of match cand to pw: 0.800, average score: 0.534)
  Genes in pathway or complex:
             0.3175 0.1338 EG10790 (purA) ADENYLOSUCCINATE-SYN-MONOMER (PurA)
             0.5120 0.0583 EG11314 (purB) ASL-MONOMER (5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole lyase [multifunctional])
             0.2786 0.1098 EG10032 (adk) ADENYL-KIN-MONOMER (adenylate kinase)
             0.9996 0.9989 EG10661 (nrdB) NRDB-MONOMER (NrdB)
   *in cand* 0.9997 0.9994 EG10660 (nrdA) NRDA-MONOMER (NrdA)
             0.5813 0.0674 EG11417 (nrdD) RIBONUCLEOSIDE-TRIP-REDUCT-MONOMER (ribonucleoside-triphosphate reductase)
   *in cand* 0.9998 0.9995 EG12381 (nrdF) NRDF-MONOMER (NrdF)
   *in cand* 0.9998 0.9996 EG20257 (nrdE) NRDE-MONOMER (NrdE)
             0.8669 0.5443 EG10650 (ndk) NUCLEOSIDE-DIP-KIN-MONOMER (Ndk)
             0.2702 0.1230 EG10100 (atpC) ATPC-MONOMER (ATP synthase, F1 complex, ε subunit)
             0.2869 0.0936 EG10105 (atpH) ATPH-MONOMER (ATP synthase, F1 complex, δ subunit)
             0.3155 0.1411 EG10098 (atpA) ATPA-MONOMER (ATP synthase, F1 complex, α subunit)
             0.2334 0.0539 EG10104 (atpG) ATPG-MONOMER (ATP synthase, F1 complex, γ subunit)
             0.3708 0.1477 EG10101 (atpD) ATPD-MONOMER (ATP synthase, F1 complex, β subunit)
             0.2607 0.0654 EG10102 (atpE) ATPE-MONOMER (ATP synthase, F0 complex, c subunit)
             0.2841 0.0774 EG10103 (atpF) ATPF-MONOMER (ATP synthase, F0 complex, b subunit)
             0.1749 0.0028 EG10099 (atpB) ATPB-MONOMER (ATP synthase, F0 complex, a subunit)
   *in cand* 0.9996 0.9994 G7401 (nrdH) G7401-MONOMER (glutaredoxin-like protein)
             0.6611 0.2237 EG10318 (fldA) OX-FLAVODOXIN1 (oxidized flavodoxin 1)
             0.9534 0.8837 EG12697 (fldB) OX-FLAVODOXIN2 (oxidized flavodoxin 2)
             0.3621 0.2092 EG11031 (trxA) OX-THIOREDOXIN-MONOMER (oxidized thioredoxin)
             0.9387 0.8399 EG11887 (trxC) OX-THIOREDOXIN2-MONOMER (oxidized thioredoxin 2)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9995 G7402 (nrdI) G7402-MONOMER (flavodoxin involved in diferric-tyrosyl radical cofactor maintenance for ribonucleotide reductase)

- PWY-6125 (guanosine nucleotides de novo biosynthesis) (degree of match pw to cand: 0.286, degree of match cand to pw: 0.800, average score: 0.689)
  Genes in pathway or complex:
             0.9268 0.8641 EG10421 (guaB) IMP-DEHYDROG-MONOMER (GuaB)
             0.9305 0.8166 EG10420 (guaA) GMP-SYN-MONOMER (GMP synthetase)
             0.2153 0.0685 EG10965 (gmk) GUANYL-KIN-MONOMER (Gmk)
             0.9996 0.9989 EG10661 (nrdB) NRDB-MONOMER (NrdB)
   *in cand* 0.9997 0.9994 EG10660 (nrdA) NRDA-MONOMER (NrdA)
             0.5813 0.0674 EG11417 (nrdD) RIBONUCLEOSIDE-TRIP-REDUCT-MONOMER (ribonucleoside-triphosphate reductase)
   *in cand* 0.9998 0.9995 EG12381 (nrdF) NRDF-MONOMER (NrdF)
   *in cand* 0.9998 0.9996 EG20257 (nrdE) NRDE-MONOMER (NrdE)
             0.8669 0.5443 EG10650 (ndk) NUCLEOSIDE-DIP-KIN-MONOMER (Ndk)
   *in cand* 0.9996 0.9994 G7401 (nrdH) G7401-MONOMER (glutaredoxin-like protein)
             0.6611 0.2237 EG10318 (fldA) OX-FLAVODOXIN1 (oxidized flavodoxin 1)
             0.9534 0.8837 EG12697 (fldB) OX-FLAVODOXIN2 (oxidized flavodoxin 2)
             0.3621 0.2092 EG11031 (trxA) OX-THIOREDOXIN-MONOMER (oxidized thioredoxin)
             0.9387 0.8399 EG11887 (trxC) OX-THIOREDOXIN2-MONOMER (oxidized thioredoxin 2)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9995 G7402 (nrdI) G7402-MONOMER (flavodoxin involved in diferric-tyrosyl radical cofactor maintenance for ribonucleotide reductase)

- RIBONUCLEOSIDE-DIP-REDUCTII-CPLX (ribonucleoside-diphosphate reductase 2) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.400, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9998 0.9995 EG12381 (nrdF) NRDF-MONOMER (NrdF)
   *in cand* 0.9998 0.9996 EG20257 (nrdE) NRDE-MONOMER (NrdE)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9994 EG10660 (nrdA) NRDA-MONOMER (NrdA)
   *in cand* 0.9996 0.9994 G7401 (nrdH) G7401-MONOMER (glutaredoxin-like protein)
   *in cand* 0.9997 0.9995 G7402 (nrdI) G7402-MONOMER (flavodoxin involved in diferric-tyrosyl radical cofactor maintenance for ribonucleotide reductase)

- PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis) (degree of match pw to cand: 0.073, degree of match cand to pw: 0.800, average score: 0.550)
  Genes in pathway or complex:
             0.7838 0.4708 EG10449 (hisG) ATPPHOSRIBOSTRANS-MONOMER (HisG)
             0.8794 0.6764 EG10451 (hisI) HISTCYCLOPRATPPHOS (phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphatase)
             0.8215 0.6027 EG10444 (hisA) PRIBFAICARPISOM-MONOMER (N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase)
             0.9206 0.7879 EG10448 (hisF) CYCLASE-MONOMER (imidazole glycerol phosphate synthase, HisF subunit)
             0.7282 0.5809 EG10450 (hisH) GLUTAMIDOTRANS-MONOMER (imidazole glycerol phosphate synthase, HisH subunit)
             0.8257 0.7154 EG10445 (hisB) IMIDPHOSPHADEHYDHISTIDPHOSPHA-MONOMER (HisB)
             0.9140 0.7093 EG10446 (hisC) HISTPHOSTRANS-MONOMER (HisC)
             0.8658 0.7369 EG10447 (hisD) HISTDEHYD-MONOMER (HisD)
             0.3175 0.1338 EG10790 (purA) ADENYLOSUCCINATE-SYN-MONOMER (PurA)
             0.5120 0.0583 EG11314 (purB) ASL-MONOMER (5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole lyase [multifunctional])
             0.2786 0.1098 EG10032 (adk) ADENYL-KIN-MONOMER (adenylate kinase)
             0.9996 0.9989 EG10661 (nrdB) NRDB-MONOMER (NrdB)
   *in cand* 0.9997 0.9994 EG10660 (nrdA) NRDA-MONOMER (NrdA)
             0.5813 0.0674 EG11417 (nrdD) RIBONUCLEOSIDE-TRIP-REDUCT-MONOMER (ribonucleoside-triphosphate reductase)
   *in cand* 0.9998 0.9995 EG12381 (nrdF) NRDF-MONOMER (NrdF)
   *in cand* 0.9998 0.9996 EG20257 (nrdE) NRDE-MONOMER (NrdE)
             0.2702 0.1230 EG10100 (atpC) ATPC-MONOMER (ATP synthase, F1 complex, ε subunit)
             0.2869 0.0936 EG10105 (atpH) ATPH-MONOMER (ATP synthase, F1 complex, δ subunit)
             0.3155 0.1411 EG10098 (atpA) ATPA-MONOMER (ATP synthase, F1 complex, α subunit)
             0.2334 0.0539 EG10104 (atpG) ATPG-MONOMER (ATP synthase, F1 complex, γ subunit)
             0.3708 0.1477 EG10101 (atpD) ATPD-MONOMER (ATP synthase, F1 complex, β subunit)
             0.2607 0.0654 EG10102 (atpE) ATPE-MONOMER (ATP synthase, F0 complex, c subunit)
             0.2841 0.0774 EG10103 (atpF) ATPF-MONOMER (ATP synthase, F0 complex, b subunit)
             0.1749 0.0028 EG10099 (atpB) ATPB-MONOMER (ATP synthase, F0 complex, a subunit)
             0.9268 0.8641 EG10421 (guaB) IMP-DEHYDROG-MONOMER (GuaB)
             0.9305 0.8166 EG10420 (guaA) GMP-SYN-MONOMER (GMP synthetase)
             0.2153 0.0685 EG10965 (gmk) GUANYL-KIN-MONOMER (Gmk)
             0.7975 0.6581 EG10791 (purC) SAICARSYN-MONOMER (PurC)
             0.3758 0.1436 EG10795 (purH) AICARTRANSIMPCYCLO-CPLX (AICAR transformylase / IMP cyclohydrolase)
             0.4524 0.1456 EG10793 (purE) PURE-MONOMER (PurE)
             0.3358 0.1099 EG10796 (purK) PURK-MONOMER (N5-carboxyaminoimidazole ribonucleotide synthetase monomer)
             0.6657 0.4728 EG10794 (purF) PRPPAMIDOTRANS-MONOMER (PurF)
             0.2123 0.0028 EG10792 (purD) GLYCRIBONUCSYN-MONOMER (phosphoribosylamine-glycine ligase)
             0.8038 0.5106 EG10797 (purL) FGAMSYN-MONOMER (phosphoribosylformylglycinamide synthetase)
             0.9262 0.7882 EG10798 (purM) AIRS-MONOMER (PurM)
             0.5842 0.4255 EG11809 (purT) GARTRANSFORMYL2-MONOMER (phosphoribosylglycinamide formyltransferase 2)
             0.2893 0.2207 EG11539 (pyrH) UMPKI-MONOMER (PyrH)
             0.7565 0.3593 EG10810 (pyrG) CTPSYN-MONOMER (PyrG)
             0.8669 0.5443 EG10650 (ndk) NUCLEOSIDE-DIP-KIN-MONOMER (Ndk)
             0.2989 0.1795 EG10134 (carA) CARBPSYN-SMALL (CarA)
             0.2543 0.1214 EG10135 (carB) CARBPSYN-LARGE (CarB)
             0.1400 0.0382 EG10811 (pyrI) ASPCARBREG-MONOMER (aspartate carbamoyltransferase, PyrI subunit)
             0.1483 0.0548 EG10805 (pyrB) ASPCARBCAT-MONOMER (aspartate carbamoyltransferase, PyrB subunit)
             0.6355 0.2142 EG10806 (pyrC) DIHYDROOROT-MONOMER (PyrC)
             0.6128 0.4189 EG10808 (pyrE) OROPRIBTRANS-MONOMER (PyrE)
             0.7331 0.2352 EG10809 (pyrF) OROTPDECARB-MONOMER (PyrF)
             0.3887 0.1806 EG10807 (pyrD) DIHYDROOROTOX-MONOMER (dihydroorotate dehydrogenase)
             0.4976 0.2679 EG10774 (prs) PRPPSYN-MONOMER (ribose-phosphate diphosphokinase)
             0.2916 0.0874 EG10723 (phnN) EG10723-MONOMER (ribose 1,5-bisphosphokinase)
             0.2370 0.1095 EG10220 (deoB) PPENTOMUT-MONOMER (phosphopentomutase)
   *in cand* 0.9996 0.9994 G7401 (nrdH) G7401-MONOMER (glutaredoxin-like protein)
             0.6611 0.2237 EG10318 (fldA) OX-FLAVODOXIN1 (oxidized flavodoxin 1)
             0.9534 0.8837 EG12697 (fldB) OX-FLAVODOXIN2 (oxidized flavodoxin 2)
             0.3621 0.2092 EG11031 (trxA) OX-THIOREDOXIN-MONOMER (oxidized thioredoxin)
             0.9387 0.8399 EG11887 (trxC) OX-THIOREDOXIN2-MONOMER (oxidized thioredoxin 2)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9995 G7402 (nrdI) G7402-MONOMER (flavodoxin involved in diferric-tyrosyl radical cofactor maintenance for ribonucleotide reductase)
   This pathway has holes



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG12381 EG20257 G7401 G7402 (centered at EG20257)
EG10660 (centered at EG10660)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7402   G7401   EG20257   EG12381   EG10660   
180/623128/623374/623334/623366/623
AAEO224324:0:Tyes--09990
AAUR290340:2:Tyes23101
AAVE397945:0:Tyes--101
ABAU360910:0:Tyes--0-0
ABOR393595:0:Tyes--0-0
ABUT367737:0:Tyes--010
ACEL351607:0:Tyes----0
ACRY349163:8:Tyes---0-
AEHR187272:0:Tyes--0-0
AFER243159:0:Tyes--0-0
AHYD196024:0:Tyes---10
ALAI441768:0:Tyes2-101
AMAR234826:0:Tyes---0-
AMAR329726:3:Tyes--010
AMET293826:0:Tyes-0---
ANAE240017:0:Tyes10282
APHA212042:0:Tyes---0-
APLE416269:0:Tyes----0
APLE434271:0:Tno----0
ASAL382245:5:Tyes---01
ASP1667:3:Tyes23101
ASP232721:2:Tyes--0-0
ASP62977:0:Tyes--0-0
AYEL322098:4:Tyes--01-
BABO262698:0:Tno23101
BAMB339670:3:Tno--0-0
BAMB398577:3:Tno--0-0
BAMY326423:0:Tyes0-12-
BANT260799:0:Tno0-34-
BANT261594:2:Tno0--1-
BANT568206:2:Tyes4-10-
BANT592021:2:Tno0-34-
BAPH198804:0:Tyes--101
BBAC264462:0:Tyes--0-0
BBAC360095:0:Tyes10232
BBRO257310:0:Tyes--0-0
BCAN483179:0:Tno10232
BCEN331271:2:Tno--0-0
BCEN331272:3:Tyes--0-0
BCER226900:1:Tyes0-121
BCER288681:0:Tno0-13-
BCER315749:1:Tyes0-23-
BCER405917:1:Tyes0--1-
BCER572264:1:Tno0-14-
BCIC186490:0:Tyes--0-0
BCLA66692:0:Tyes0-121
BFRA272559:1:Tyes--010
BFRA295405:0:Tno--010
BHAL272558:0:Tyes--01-
BHEN283166:0:Tyes10232
BLIC279010:0:Tyes0-12-
BLON206672:0:Tyes1023-
BMAL243160:1:Tno--101
BMAL320388:1:Tno--101
BMAL320389:1:Tyes--010
BMEL224914:0:Tno23101
BMEL359391:0:Tno23101
BOVI236:0:Tyes0-121
BPAR257311:0:Tno--0-0
BPER257313:0:Tyes--0-0
BPET94624:0:Tyes--0-0
BPSE272560:1:Tyes--101
BPSE320372:1:Tno--101
BPSE320373:1:Tno--101
BPUM315750:0:Tyes0-12-
BQUI283165:0:Tyes10232
BSP107806:2:Tyes---01
BSP36773:2:Tyes--0-0
BSUB:0:Tyes0-121
BSUI204722:0:Tyes10232
BSUI470137:0:Tno10232
BTHA271848:1:Tno--010
BTHU281309:1:Tno0-23-
BTHU412694:1:Tno0-13-
BTRI382640:1:Tyes10232
BVIE269482:7:Tyes--0-0
BWEI315730:4:Tyes0-23-
CABO218497:0:Tyes--101
CACE272562:1:Tyes--101
CAULO:0:Tyes--0--
CBEI290402:0:Tyes--010
CBLO203907:0:Tyes---10
CBLO291272:0:Tno--010
CBOT36826:1:Tno--101
CBOT441770:0:Tyes--101
CBOT441771:0:Tno---0-
CBOT441772:1:Tno--101
CBOT498213:1:Tno--101
CBOT508765:1:Tyes--010
CBOT515621:2:Tyes--101
CBOT536232:0:Tno--101
CBUR227377:1:Tyes--010
CBUR360115:1:Tno--010
CBUR434922:2:Tno--101
CCAV227941:1:Tyes--101
CCON360104:2:Tyes--55055
CCUR360105:0:Tyes---19610
CDIF272563:1:Tyes--10-
CDIP257309:0:Tyes34202
CEFF196164:0:Fyes56404
CFEL264202:1:Tyes--010
CFET360106:0:Tyes---01738
CGLU196627:0:Tyes67505
CHOM360107:1:Tyes--148801488
CHUT269798:0:Tyes--0-0
CJAP155077:0:Tyes--0-0
CJEI306537:0:Tyes0268270272270
CJEJ192222:0:Tyes--01860
CJEJ195099:0:Tno--02530
CJEJ354242:2:Tyes--01960
CJEJ360109:0:Tyes--01850
CJEJ407148:0:Tno--01900
CMIC31964:2:Tyes--101
CMIC443906:2:Tyes--101
CMUR243161:1:Tyes--010
CNOV386415:0:Tyes--101
CPEL335992:0:Tyes---0-
CPER195102:1:Tyes--101
CPER195103:0:Tno--101
CPER289380:3:Tyes--101
CPHY357809:0:Tyes--101
CPNE115711:1:Tyes--0-0
CPNE115713:0:Tno--0-0
CPNE138677:0:Tno--0-0
CPNE182082:0:Tno--0-0
CPRO264201:0:Fyes--0-0
CPSY167879:0:Tyes-0-16581659
CRUT413404:0:Tyes----0
CSAL290398:0:Tyes1023306
CSP501479:8:Fyes10232
CTRA471472:0:Tyes--010
CTRA471473:0:Tno--010
CVES412965:0:Tyes----0
CVIO243365:0:Tyes--0-0
DGEO319795:1:Tyes2650266267-
DRAD243230:1:Tyes0-121
DRAD243230:3:Tyes-0---
ECAN269484:0:Tyes---0-
ECAR218491:0:Tyes21552154215621570
ECHA205920:0:Tyes---0-
ECOL199310:0:Tno4474464484490
ECOL316407:0:Tno4284274294300
ECOL331111:6:Tno4034024044050
ECOL362663:0:Tno3653643663670
ECOL364106:1:Tno5165155175180
ECOL405955:2:Tyes487-4884890
ECOL409438:6:Tyes4434424444450
ECOL413997:0:Tno3773763783790
ECOL439855:4:Tno3963953973980
ECOL469008:0:Tno2310391
ECOL481805:0:Tno2310393
ECOL585034:0:Tno4484474494500
ECOL585035:0:Tno5375365385390
ECOL585055:0:Tno4524514534540
ECOL585056:2:Tno4314304324330
ECOL585057:0:Tno4894884904910
ECOL585397:0:Tno4244234254260
ECOL83334:0:Tno4334324344350
ECOLI:0:Tno4474464484490
ECOO157:0:Tno4334324344350
EFAE226185:3:Tyes23101
EFER585054:1:Tyes2310529
ELIT314225:0:Tyes--70-
ERUM254945:0:Tyes---0-
ERUM302409:0:Tno---0-
ESP42895:1:Tyes3603593613620
FJOH376686:0:Tyes--0-0
FMAG334413:1:Tyes--80080
FNUC190304:0:Tyes--010
GBET391165:0:Tyes--01-
GFOR411154:0:Tyes--0-0
GKAU235909:1:Tyes--010
GOXY290633:5:Tyes---0-
GTHE420246:1:Tyes--010
HACI382638:1:Tyes--4050405
HARS204773:0:Tyes--0-0
HAUR316274:2:Tyes--0-0
HCHE349521:0:Tyes--0-0
HDUC233412:0:Tyes--0-0
HHEP235279:0:Tyes--118601186
HINF281310:0:Tyes----0
HINF374930:0:Tyes--0-0
HINF71421:0:Tno--0-0
HNEP81032:0:Tyes---0-
HPY:0:Tno--3190319
HPYL357544:1:Tyes--03800
HPYL85963:0:Tno--03910
HSAL478009:4:Tyes--0-0
HSOM205914:1:Tyes----0
HSOM228400:0:Tno----0
HSP64091:2:Tno--0-0
ILOI283942:0:Tyes---10
JSP375286:0:Tyes--0-0
KPNE272620:2:Tyes3763753773780
KRAD266940:2:Fyes23101
LACI272621:0:Tyes0--1-
LBRE387344:2:Tyes0471470469-
LCAS321967:1:Tyes0691692693692
LCHO395495:0:Tyes--010
LGAS324831:0:Tyes0--1-
LHEL405566:0:Tyes1-020
LINN272626:1:Tno--10-
LINT363253:3:Tyes--0-0
LJOH257314:0:Tyes0--1-
LLAC272622:5:Tyes23101
LLAC272623:0:Tyes2-101
LMES203120:1:Tyes20131
LMON169963:0:Tno--10-
LMON265669:0:Tyes--10-
LPLA220668:0:Tyes1682210-
LPNE272624:0:Tno--0-0
LPNE297245:1:Fno--0-0
LPNE297246:1:Fyes--0-0
LPNE400673:0:Tno--0-0
LREU557436:0:Tyes14792101
LSAK314315:0:Tyes0956955954955
LSPH444177:1:Tyes0-121
LWEL386043:0:Tyes--10-
LXYL281090:0:Tyes--101
MABS561007:1:Tyes1011909
MAER449447:0:Tyes--808
MAQU351348:2:Tyes--0-0
MAVI243243:0:Tyes78606
MBOV233413:0:Tno45303
MBOV410289:0:Tno45303
MCAP243233:0:Tyes--0-0
MCAP340047:0:Tyes1-20-
MFLA265072:0:Tyes--010
MFLO265311:0:Tyes1-02-
MGEN243273:0:Tyes1-202
MGIL350054:3:Tyes202119019
MHYO262719:0:Tyes1-02-
MHYO262722:0:Tno1-02-
MHYO295358:0:Tno1-20-
MLEP272631:0:Tyes34202
MMAR394221:0:Tyes--02-
MMYC272632:0:Tyes1-02-
MPEN272633:0:Tyes1-02-
MPET420662:1:Tyes--0-0
MPNE272634:0:Tyes1-202
MPUL272635:0:Tyes1-20-
MSME246196:0:Tyes102162
MSP164756:1:Tno102132
MSP164757:0:Tno102132
MSP189918:2:Tyes102122
MSP266779:3:Tyes--0-0
MSP400668:0:Tyes---10
MSUC221988:0:Tyes--24024
MSYN262723:0:Tyes1-20-
MTBCDC:0:Tno56404
MTBRV:0:Tno45303
MTUB336982:0:Tno45303
MTUB419947:0:Tyes45303
MVAN350058:0:Tyes102202
MXAN246197:0:Tyes--0-0
NARO279238:0:Tyes--30-
NEUR228410:0:Tyes--0-0
NEUT335283:2:Tyes--0-0
NFAR247156:2:Tyes1011909
NGON242231:0:Tyes--010
NHAM323097:2:Tyes--0-0
NMEN122586:0:Tno--303
NMEN122587:0:Tyes--303
NMEN272831:0:Tno--202
NMEN374833:0:Tno--303
NMUL323848:3:Tyes--0-0
NOCE323261:1:Tyes--0-0
NSEN222891:0:Tyes---0-
NSP387092:0:Tyes---05
NWIN323098:0:Tyes--0-0
OANT439375:4:Tyes1023-
OCAR504832:0:Tyes--0-0
OIHE221109:0:Tyes--20-
OTSU357244:0:Fyes--01-
PACN267747:0:Tyes--010
PAER208963:0:Tyes--0-0
PAER208964:0:Tno--0-0
PARC259536:0:Tyes---50
PAST100379:0:Tyes--01-
PATL342610:0:Tyes---10
PCRY335284:1:Tyes---05
PENT384676:0:Tyes--0-0
PFLU205922:0:Tyes--0-0
PFLU216595:1:Tyes--0-0
PFLU220664:0:Tyes--0-0
PHAL326442:1:Tyes---01
PING357804:0:Tyes----0
PLUM243265:0:Fyes23101804
PMEN399739:0:Tyes--0-0
PMUL272843:1:Tyes----0
PNAP365044:8:Tyes--010
PPEN278197:0:Tyes01078107910801079
PPRO298386:2:Tyes---10
PPUT160488:0:Tno--0-0
PPUT351746:0:Tyes--0-0
PPUT76869:0:Tno--0-0
PSP296591:2:Tyes--101
PSP312153:0:Tyes--0-0
PSP56811:2:Tyes--0-0
PSTU379731:0:Tyes--0-0
PSYR205918:0:Tyes--0-0
PSYR223283:2:Tyes--0-0
RAKA293614:0:Fyes---0-
RBEL336407:0:Tyes---0-
RBEL391896:0:Fno---0-
RCAN293613:0:Fyes---0-
RCON272944:0:Tno---0-
RDEN375451:4:Tyes-0---
RETL347834:5:Tyes23101
REUT264198:3:Tyes--0-0
REUT381666:2:Tyes--0-0
RFEL315456:2:Tyes---0-
RFER338969:1:Tyes--010
RLEG216596:6:Tyes23101
RMAS416276:1:Tyes---0-
RMET266264:2:Tyes--0-0
RPAL316056:0:Tyes--0-0
RPRO272947:0:Tyes---0-
RRIC392021:0:Fno---0-
RRIC452659:0:Tyes---0-
RSAL288705:0:Tyes03056305830593058
RSOL267608:1:Tyes--0-0
RSP101510:3:Fyes10232
RTYP257363:0:Tno---0-
SAGA205921:0:Tno143143002
SAGA208435:0:Tno139339202
SAGA211110:0:Tyes136936802
SALA317655:1:Tyes---0-
SARE391037:0:Tyes--0-0
SAUR158878:1:Tno0-121
SAUR158879:1:Tno0-121
SAUR196620:0:Tno0-121
SAUR273036:0:Tno0-121
SAUR282458:0:Tno0-121
SAUR282459:0:Tno0-121
SAUR359786:1:Tno0-121
SAUR359787:1:Tno0-121
SAUR367830:3:Tno0-121
SAUR418127:0:Tyes0-121
SAUR426430:0:Tno0-121
SAUR93061:0:Fno0-121
SAUR93062:1:Tno0-121
SAVE227882:1:Fyes--0-0
SBAL399599:3:Tyes--010
SBAL402882:1:Tno--010
SBOY300268:1:Tyes7427437417400
SCO:2:Fyes--0-0
SDEG203122:0:Tyes--0-0
SDEN318161:0:Tyes--0-0
SDYS300267:1:Tyes4094084104110
SENT209261:0:Tno20042003200520060
SENT220341:0:Tno3983973994000
SENT295319:0:Tno19931992199401
SENT321314:2:Tno4674664684690
SENT454169:2:Tno4544534554560
SEPI176279:1:Tyes0-121
SEPI176280:0:Tno0-121
SERY405948:0:Tyes--0-0
SFLE198214:0:Tyes3773763783790
SFLE373384:0:Tno5035045025010
SGLO343509:3:Tyes-325--0
SGOR29390:0:Tyes01431143214331432
SHAE279808:0:Tyes2-101
SHAL458817:0:Tyes----0
SHIGELLA:0:Tno3853843863870
SLOI323850:0:Tyes--0-0
SMUT210007:0:Tyes10222101
SONE211586:1:Tyes--010
SPEA398579:0:Tno--101
SPNE1313:0:Tyes0868869870869
SPNE170187:0:Tyes0----
SPNE171101:0:Tno0914915916915
SPNE487213:0:Tno0790789788789
SPNE487214:0:Tno0986987988987
SPNE488221:0:Tno0937938939938
SPRO399741:1:Tyes4564554574580
SPYO160490:0:Tno175976002
SPYO186103:0:Tno178378402
SPYO193567:0:Tno7460745747745
SPYO198466:0:Tno174774802
SPYO286636:0:Tno172872902
SPYO293653:0:Tno177577602
SPYO319701:0:Tyes178078102
SPYO370551:0:Tno182282302
SPYO370552:0:Tno1850202
SPYO370553:0:Tno1825202
SPYO370554:0:Tyes1-88102
SSAP342451:2:Tyes2-101
SSED425104:0:Tyes--010
SSON300269:1:Tyes-5045055060
SSP1148:0:Tyes--014110
SSP292414:2:Tyes23101
SSP387093:0:Tyes--0260
SSP644076:6:Fyes10232
SSP94122:1:Tyes--101
SSUI391295:0:Tyes9390131
SSUI391296:0:Tyes925-020
STHE264199:0:Tyes01032103310341033
STHE292459:0:Tyes--101
STHE299768:0:Tno01055105610571056
STHE322159:2:Tyes0914915916915
STRO369723:0:Tyes--0-0
STYP99287:1:Tyes5265255275280
TCRU317025:0:Tyes----0
TDEN243275:0:Tyes--606
TDEN292415:0:Tyes--0-0
TDEN326298:0:Tyes--212302123
TFUS269800:0:Tyes--0-0
TPAL243276:0:Tyes--9450-
TROS309801:1:Tyes--0-0
TTUR377629:0:Tyes--0-0
TWHI203267:0:Tyes--101
TWHI218496:0:Tno--101
VCHO:0:Tyes---01
VCHO345073:1:Tno---01
VEIS391735:1:Tyes--101
VFIS312309:2:Tyes----0
VPAR223926:1:Tyes---10
VVUL196600:2:Tyes---01
VVUL216895:1:Tno---10
WPIP80849:0:Tyes---0-
WPIP955:0:Tyes---0-
WSUC273121:0:Tyes--0-0
XAXO190486:0:Tyes--101
XCAM190485:0:Tyes--0-0
XCAM314565:0:Tno--0-0
XCAM316273:0:Tno--0-0
XCAM487884:0:Tno--0-0
XFAS160492:2:Tno--010
XFAS183190:1:Tyes--010
XFAS405440:0:Tno--010
XORY291331:0:Tno--010
XORY342109:0:Tyes--010
XORY360094:0:Tno--202
YENT393305:1:Tyes2310457
YPES187410:5:Tno-2101750
YPES214092:3:Tno13761377137513740
YPES349746:2:Tno21662167216521640
YPES360102:3:Tyes14701471146914680
YPES377628:2:Tno23101652
YPES386656:1:Tno----0
YPES386656:2:Tno0-12-
YPSE273123:2:Tno17031702170417050
YPSE349747:2:Tno23101692
ZMOB264203:0:Tyes---0-



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