CANDIDATE ID: 222

CANDIDATE ID: 222

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9949890e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    2.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7635 (agaD) (b3140)
   Products of gene:
     - AGAD-MONOMER (AgaD)
     - CPLX-170 (EIIAga)

- G7632 (agaV) (b3133)
   Products of gene:
     - G7632-MONOMER (PTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA))
     - CPLX0-7610 (N-acetyl-D-galactosamine PTS transporter)

- EG10569 (manZ) (b1819)
   Products of gene:
     - MANZ-MONOMER (ManZ)
     - CPLX-165 (mannose PTS permease)
       Reactions:
        N-acetyl-D-mannosamine[periplasmic space] + phosphoenolpyruvate  ->  N-acetyl-D-mannosamine-6-phosphate[cytosol] + pyruvate
        D-glucosamine[periplasmic space] + phosphoenolpyruvate  ->  D-glucosamine-6-phosphate[cytosol] + pyruvate
        phosphoenolpyruvate + beta-D-glucose[periplasmic space]  ->  beta-D-glucose-6-phosphate[cytosol] + pyruvate
        phosphoenolpyruvate + N-acetyl-beta-D-glucosamine[periplasmic space]  ->  N-acetyl-D-glucosamine-6-phosphate[cytosol] + pyruvate
        D-mannose[periplasmic space] + phosphoenolpyruvate  ->  D-mannose 6-phosphate[cytosol] + pyruvate
        D-fructose[periplasmic space] + phosphoenolpyruvate  ->  D-fructose-6-phosphate[cytosol] + pyruvate

- EG10568 (manY) (b1818)
   Products of gene:
     - MANY-MONOMER (ManY)
     - CPLX-165 (mannose PTS permease)
       Reactions:
        N-acetyl-D-mannosamine[periplasmic space] + phosphoenolpyruvate  ->  N-acetyl-D-mannosamine-6-phosphate[cytosol] + pyruvate
        D-glucosamine[periplasmic space] + phosphoenolpyruvate  ->  D-glucosamine-6-phosphate[cytosol] + pyruvate
        phosphoenolpyruvate + beta-D-glucose[periplasmic space]  ->  beta-D-glucose-6-phosphate[cytosol] + pyruvate
        phosphoenolpyruvate + N-acetyl-beta-D-glucosamine[periplasmic space]  ->  N-acetyl-D-glucosamine-6-phosphate[cytosol] + pyruvate
        D-mannose[periplasmic space] + phosphoenolpyruvate  ->  D-mannose 6-phosphate[cytosol] + pyruvate
        D-fructose[periplasmic space] + phosphoenolpyruvate  ->  D-fructose-6-phosphate[cytosol] + pyruvate

- EG10567 (manX) (b1817)
   Products of gene:
     - MANX-MONOMER (ManX)
     - CPLX-165 (mannose PTS permease)
       Reactions:
        N-acetyl-D-mannosamine[periplasmic space] + phosphoenolpyruvate  ->  N-acetyl-D-mannosamine-6-phosphate[cytosol] + pyruvate
        D-glucosamine[periplasmic space] + phosphoenolpyruvate  ->  D-glucosamine-6-phosphate[cytosol] + pyruvate
        phosphoenolpyruvate + beta-D-glucose[periplasmic space]  ->  beta-D-glucose-6-phosphate[cytosol] + pyruvate
        phosphoenolpyruvate + N-acetyl-beta-D-glucosamine[periplasmic space]  ->  N-acetyl-D-glucosamine-6-phosphate[cytosol] + pyruvate
        D-mannose[periplasmic space] + phosphoenolpyruvate  ->  D-mannose 6-phosphate[cytosol] + pyruvate
        D-fructose[periplasmic space] + phosphoenolpyruvate  ->  D-fructose-6-phosphate[cytosol] + pyruvate



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 133
Effective number of orgs (counting one per cluster within 468 clusters): 79

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
VVUL216895 ncbi Vibrio vulnificus CMCP65
VVUL196600 ncbi Vibrio vulnificus YJ0165
VFIS312309 ncbi Vibrio fischeri ES1145
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB45
TSP1755 Thermoanaerobacter sp.5
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332235
TPEN368408 ncbi Thermofilum pendens Hrk 55
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
STHE322159 ncbi Streptococcus thermophilus LMD-95
STHE299768 ncbi Streptococcus thermophilus CNRZ10665
STHE292459 ncbi Symbiobacterium thermophilum IAM 148635
STHE264199 ncbi Streptococcus thermophilus LMG 183115
SSUI391296 ncbi Streptococcus suis 98HAH335
SSUI391295 ncbi Streptococcus suis 05ZYH335
SSON300269 ncbi Shigella sonnei Ss0465
SPYO370554 ncbi Streptococcus pyogenes MGAS107505
SPYO370553 ncbi Streptococcus pyogenes MGAS20965
SPYO370552 ncbi Streptococcus pyogenes MGAS102705
SPYO370551 ncbi Streptococcus pyogenes MGAS94295
SPYO319701 ncbi Streptococcus pyogenes MGAS61805
SPYO293653 ncbi Streptococcus pyogenes MGAS50055
SPYO286636 ncbi Streptococcus pyogenes MGAS103945
SPYO198466 ncbi Streptococcus pyogenes MGAS3155
SPYO193567 ncbi Streptococcus pyogenes SSI-15
SPYO186103 ncbi Streptococcus pyogenes MGAS82325
SPYO160490 ncbi Streptococcus pyogenes M1 GAS5
SPRO399741 ncbi Serratia proteamaculans 5685
SPNE488221 ncbi Streptococcus pneumoniae 705855
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-65
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-145
SPNE171101 ncbi Streptococcus pneumoniae R65
SPNE170187 ncbi Streptococcus pneumoniae G545
SPNE1313 Streptococcus pneumoniae5
SMUT210007 ncbi Streptococcus mutans UA1595
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SGOR29390 Streptococcus gordonii Challis5
SGLO343509 ncbi Sodalis glossinidius morsitans5
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SDYS300267 ncbi Shigella dysenteriae Sd1975
SBOY300268 ncbi Shigella boydii Sb2275
SAGA211110 ncbi Streptococcus agalactiae NEM3165
SAGA208435 ncbi Streptococcus agalactiae 2603V/R5
SAGA205921 ncbi Streptococcus agalactiae A9095
SACI56780 ncbi Syntrophus aciditrophicus SB4
PPRO298386 ncbi Photobacterium profundum SS95
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257455
PMUL272843 ncbi Pasteurella multocida multocida Pm705
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO15
PCAR338963 ncbi Pelobacter carbinolicus DSM 23805
OIHE221109 ncbi Oceanobacillus iheyensis HTE8315
MXAN246197 ncbi Myxococcus xanthus DK 16224
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E5
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53345
LSAK314315 ncbi Lactobacillus sakei sakei 23K5
LPLA220668 ncbi Lactobacillus plantarum WCFS15
LMON265669 ncbi Listeria monocytogenes 4b F23655
LMON169963 ncbi Listeria monocytogenes EGD-e5
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82935
LLAC272623 ncbi Lactococcus lactis lactis Il14035
LLAC272622 ncbi Lactococcus lactis cremoris SK115
LJOH257314 ncbi Lactobacillus johnsonii NCC 5335
LINN272626 ncbi Listeria innocua Clip112625
LHEL405566 ncbi Lactobacillus helveticus DPC 45715
LGAS324831 ncbi Lactobacillus gasseri ATCC 333235
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118425
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3655
LCAS321967 ncbi Lactobacillus casei ATCC 3345
LBRE387344 ncbi Lactobacillus brevis ATCC 3674
LACI272621 ncbi Lactobacillus acidophilus NCFM5
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
HSOM228400 ncbi Haemophilus somnus 23365
HSOM205914 ncbi Haemophilus somnus 129PT5
HDUC233412 ncbi Haemophilus ducreyi 35000HP5
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255865
ESP42895 Enterobacter sp.5
EFER585054 ncbi Escherichia fergusonii ATCC 354695
EFAE226185 ncbi Enterococcus faecalis V5835
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough4
CPER289380 ncbi Clostridium perfringens SM1015
CPER195103 ncbi Clostridium perfringens ATCC 131245
CPER195102 ncbi Clostridium perfringens 135
CDIF272563 ncbi Clostridium difficile 6305
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto5
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6575
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B5
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN5
CBLO203907 ncbi Candidatus Blochmannia floridanus5
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80525
CACE272562 ncbi Clostridium acetobutylicum ATCC 8245
BSUB ncbi Bacillus subtilis subtilis 1685
BLIC279010 ncbi Bacillus licheniformis ATCC 145805
BCLA66692 ncbi Bacillus clausii KSM-K165
BCIC186490 Candidatus Baumannia cicadellinicola5
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL035
APLE416269 ncbi Actinobacillus pleuropneumoniae L205
ANAE240017 Actinomyces oris MG15
AHYD196024 Aeromonas hydrophila dhakensis5
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C4


Names of the homologs of the genes in the group in each of these orgs
  G7635   G7632   EG10569   EG10568   EG10567   
YPSE349747 YPSIP31758_0938YPSIP31758_0940YPSIP31758_2370YPSIP31758_2369YPSIP31758_2368
YPSE273123 YPTB3080YPTB3078YPTB1632YPTB1633YPTB1634
YPES386656 YPDSF_0678YPDSF_0680YPDSF_1368YPDSF_1367YPDSF_1366
YPES377628 YPN_3038YPN_3036YPN_2367YPN_2366YPN_2365
YPES360102 YPA_0434YPA_0436YPA_1128YPA_1129YPA_1130
YPES349746 YPANGOLA_A3372YPANGOLA_A3374YPANGOLA_A3372YPANGOLA_A1652YPANGOLA_A1651
YPES214092 YPO0836YPO0834YPO1756YPO1757YPO1758
YPES187410 Y3221Y3219Y2553Y2552Y2551
YENT393305 YE0811YE1777YE1775YE1776YE1777
VVUL216895 VV2_1020VV2_1022VV2_1020VV2_1021VV2_1022
VVUL196600 VVA1512VVA1514VVA1512VVA1513VVA1514
VFIS312309 VFA1001VFA1003VFA1001VFA1002VFA1003
TTEN273068 TTE0194TTE0193TTE0194TTE0194TTE0193
TSP1755 TETH514_0134TETH514_0135TETH514_0134TETH514_0133TETH514_0135
TPSE340099 TETH39_2068TETH39_2067TETH39_2068TETH39_2069TETH39_2067
TPEN368408 TPEN_1100TPEN_1097TPEN_1100TPEN_1100TPEN_1097
STYP99287 STM0574STM1830STM1832STM1831STM1830
STHE322159 STER_0370STER_0372STER_0370STER_0371STER_0372
STHE299768 STR0331STR0333STR0331STR0332STR0333
STHE292459 STH1247STH1249STH1278STH1278STH1249
STHE264199 STU0331STU0333STU0331STU0332STU0333
SSUI391296 SSU98_1232SSU98_1234SSU98_1790SSU98_1789SSU98_1788
SSUI391295 SSU05_1217SSU05_1219SSU05_1780SSU05_1779SSU05_1778
SSON300269 SSO_1341SSO_1343SSO_1341SSO_1342SSO_1343
SPYO370554 MGAS10750_SPY0538MGAS10750_SPY0540MGAS10750_SPY1540MGAS10750_SPY1539MGAS10750_SPY1538
SPYO370553 MGAS2096_SPY0531MGAS2096_SPY0533MGAS2096_SPY1508MGAS2096_SPY1507MGAS2096_SPY1506
SPYO370552 MGAS10270_SPY0514MGAS10270_SPY0516MGAS10270_SPY1548MGAS10270_SPY1547MGAS10270_SPY1546
SPYO370551 MGAS9429_SPY0510MGAS9429_SPY0512MGAS9429_SPY1483MGAS9429_SPY1482MGAS9429_SPY1481
SPYO319701 M28_SPY0498M28_SPY0500M28_SPY1470M28_SPY1469M28_SPY1468
SPYO293653 M5005_SPY0519M5005_SPY0521M5005_SPY1481M5005_SPY1480M5005_SPY1479
SPYO286636 M6_SPY0540M6_SPY0542M6_SPY1475M6_SPY1474M6_SPY1473
SPYO198466 SPYM3_0443SPYM3_0445SPYM3_1513SPYM3_1512SPYM3_1511
SPYO193567 SPS1412SPS1410SPS0354SPS0355SPS0356
SPYO186103 SPYM18_0694SPYM18_0696SPYM18_1812SPYM18_1811SPYM18_1810
SPYO160490 SPY0629SPY0631SPY1740SPY1739SPY1738
SPRO399741 SPRO_3845SPRO_3847SPRO_2815SPRO_2814SPRO_2813
SPNE488221 SP70585_0389SP70585_0387SP70585_0341SP70585_0342SP70585_0343
SPNE487214 SPH_0436SPH_0434SPH_0398SPH_0399SPH_0400
SPNE487213 SPT_0374SPT_0372SPT_0327SPT_0328SPT_0329
SPNE171101 SPR0295SPR0293SPR0259SPR0260SPR0261
SPNE170187 SPN08203SPN08201SPN08164SPN08165SPN08167
SPNE1313 SPJ_0320SPJ_0318SPJ_0290SPJ_0291SPJ_0292
SMUT210007 SMU_1879SMU_1877SMU_1879SMU_1878SMU_1877
SHIGELLA AGADAGAVMANZMANYMANX
SGOR29390 SGO_1681SGO_0044SGO_1681SGO_1680SGO_1679
SGLO343509 SG1325SG2422SG1325SG1326SG1327
SFLE373384 SFV_1410SFV_1412SFV_1410SFV_1411SFV_1412
SFLE198214 AAN44645.1AAN44637.1AAN43010.1AAN43011.1AAN43012.1
SENT454169 SEHA_C0686SEHA_C2030SEHA_C2032SEHA_C2031SEHA_C2030
SENT321314 SCH_1826SCH_1824SCH_1826SCH_1825SCH_1824
SENT295319 SPA1041SPA1043SPA1041SPA1042SPA1043
SENT220341 STY1961STY1959STY1961STY1960STY1959
SENT209261 T1046T1048T1046T1047T1048
SDYS300267 SDY_1965SDY_1963SDY_1965SDY_4315SDY_1963
SBOY300268 SBO_1231SBO_1229SBO_1231SBO_1230SBO_1229
SAGA211110 GBS1886GBS1888GBS0346GBS0347GBS0348
SAGA208435 SAG_1898SAG_1900SAG_0359SAG_0360SAG_0361
SAGA205921 SAK_0433SAK_0435SAK_0433SAK_0434SAK_0435
SACI56780 SYN_01727SYN_02845SYN_01727SYN_02844
PPRO298386 PBPRB1040PBPRB1038PBPRB1040PBPRB1039PBPRB1038
PPEN278197 PEPE_0173PEPE_0171PEPE_1516PEPE_1517PEPE_1518
PMUL272843 PM0832PM0834PM0832PM0833PM0834
PLUM243265 PLU0837PLU0835PLU2699PLU2698PLU2697
PCAR338963 PCAR_1931PCAR_1933PCAR_1931PCAR_1932PCAR_1933
OIHE221109 OB3373OB3375OB3373OB3374OB3375
MXAN246197 MXAN_6532MXAN_6534MXAN_6532MXAN_6535
MSUC221988 MS0616MS0618MS0616MS0617MS0618
LWEL386043 LWE0084LWE0742LWE0740LWE0741LWE0082
LSAK314315 LSA0451LSA0449LSA0451LSA0450LSA0449
LPLA220668 LP_2648LP_2650LP_0577LP_0576LP_0575
LMON265669 LMOF2365_0115LMOF2365_0113LMOF2365_0798LMOF2365_0799LMOF2365_0113
LMON169963 LMO0098LMO0783LMO0781LMO0782LMO0096
LMES203120 LEUM_1766LEUM_1768LEUM_1766LEUM_1767LEUM_1768
LLAC272623 L147466L1762179L147466L146623L1762179
LLAC272622 LACR_1865LACR_1863LACR_1865LACR_1864LACR_1863
LJOH257314 LJ_0505LJ_0503LJ_0505LJ_0504LJ_0503
LINN272626 LIN0145LIN0776LIN0774LIN0775LIN0143
LHEL405566 LHV_0482LHV_0480LHV_0482LHV_0481LHV_0480
LGAS324831 LGAS_1793LGAS_1795LGAS_1793LGAS_1794LGAS_1795
LDEL390333 LDB1799LDB1801LDB1799LDB1800LDB1801
LDEL321956 LBUL_1671LBUL_1673LBUL_1671LBUL_1672LBUL_1673
LCAS321967 LSEI_2827LSEI_2667LSEI_2827LSEI_2828LSEI_2829
LBRE387344 LVIS_0558LVIS_0558LVIS_0557LVIS_0556
LACI272621 LBA0456LBA0452LBA0456LBA0455LBA0452
KPNE272620 GKPORF_B1488GKPORF_B1486GKPORF_B1488GKPORF_B1487GKPORF_B1486
HSOM228400 HSM_0958HSM_0960HSM_0958HSM_0959HSM_0960
HSOM205914 HS_0607HS_0609HS_0607HS_0608HS_0609
HDUC233412 HD_0766HD_0768HD_0766HD_0767HD_0768
FNUC190304 FN0629FN0631FN0629FN0630FN0631
ESP42895 ENT638_3581ENT638_3573ENT638_2388ENT638_2387ENT638_2386
EFER585054 EFER_4351EFER_4360EFER_1257EFER_1258EFER_1259
EFAE226185 EF_3042EF_3045EF_0022EF_0021EF_0020
ECOO157 AGADAGAVMANZMANYMANX
ECOL83334 ECS4019ECS4011ECS2529ECS2528ECS2527
ECOL585397 ECED1_3804ECED1_3795ECED1_2022ECED1_2021ECED1_2020
ECOL585057 ECIAI39_3641ECIAI39_3632ECIAI39_1233ECIAI39_1234ECIAI39_1235
ECOL585056 ECUMN_3624ECUMN_3615ECUMN_2111ECUMN_2110ECUMN_2109
ECOL585055 EC55989_3560EC55989_3551EC55989_1992EC55989_1991EC55989_1990
ECOL585035 ECS88_3528ECS88_3519ECS88_1871ECS88_1870ECS88_1869
ECOL585034 ECIAI1_3290ECIAI1_3281ECIAI1_1888ECIAI1_1887ECIAI1_1886
ECOL481805 ECOLC_0558ECOLC_0567ECOLC_1813ECOLC_1814ECOLC_0567
ECOL469008 ECBD_0600ECBD_0609ECBD_1822ECBD_1823ECBD_1824
ECOL439855 ECSMS35_3439ECSMS35_3430ECSMS35_1369ECSMS35_1370ECSMS35_1371
ECOL413997 ECB_03007ECB_02998ECB_01789ECB_01788ECB_01787
ECOL409438 ECSE_3426ECSE_3417ECSE_1993ECSE_1992ECSE_1991
ECOL405955 APECO1_3287APECO1_3296APECO1_876APECO1_875APECO1_874
ECOL364106 UTI89_C3571UTI89_C3562UTI89_C2017UTI89_C2015UTI89_C2014
ECOL362663 ECP_3232ECP_3223ECP_1762ECP_1761ECP_1760
ECOL331111 ECE24377A_3622ECE24377A_3613ECE24377A_2047ECE24377A_2046ECE24377A_2045
ECOL316407 ECK3128:JW3109:B3140ECK3121:JW3102:B3133ECK1817:JW1808:B1819ECK1816:JW1807:B1818ECK1815:JW1806:B1817
ECOL199310 C3897C3888C2226C2224C2223
ECAR218491 ECA2387ECA2385ECA2387ECA2386ECA2385
DVUL882 DVU_0831DVU_1633DVU_0831DVU_1633
CPER289380 CPR_0806CPR_0397CPR_0806CPR_0805CPR_0804
CPER195103 CPF_0820CPF_0401CPF_0820CPF_0819CPF_0818
CPER195102 CPE0323CPE0821CPE0323CPE0822CPE0821
CDIF272563 CD3276CD0492CD3276CD1077CD3068
CBOT536232 CLM_3216CLM_3214CLM_3216CLM_3215CLM_3214
CBOT515621 CLJ_B3079CLJ_B3077CLJ_B3079CLJ_B3078CLJ_B3077
CBOT508765 CLL_A3131CLL_A3133CLL_A1375CLL_A1374CLL_A1373
CBLO291272 BPEN_461BPEN_459BPEN_461BPEN_460BPEN_459
CBLO203907 BFL447BFL445BFL447BFL446BFL445
CBEI290402 CBEI_2906CBEI_2908CBEI_4911CBEI_3872CBEI_0711
CACE272562 CAP0068CAP0066CAP0068CAP0067CAP0066
BSUB BSU27040BSU27060BSU27040BSU27050BSU27060
BLIC279010 BL03121BL03123BL03121BL03122BL03123
BCLA66692 ABC4073ABC4071ABC4073ABC4072ABC4071
BCIC186490 BCI_0449BCI_0451BCI_0449BCI_0450BCI_0451
APLE434271 APJL_1412APJL_1410APJL_1412APJL_1411APJL_1410
APLE416269 APL_1393APL_1391APL_1393APL_1392APL_1391
ANAE240017 ANA_2005ANA_2009ANA_2005ANA_2007ANA_2009
AHYD196024 AHA_0808AHA_0810AHA_2339AHA_0809AHA_0810
ADEH290397 ADEH_0151ADEH_0149ADEH_0151ADEH_0148


Organism features enriched in list (features available for 125 out of the 133 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 1.918e-155192
Arrangment:Pairs 6.250e-642112
Disease:Bubonic_plague 0.000088366
Disease:Dysentery 0.000088366
Disease:Gas_gangrene 0.009671033
Disease:Gastroenteritis 0.0002193913
Disease:Pneumonia 0.0000847912
Disease:Urinary_tract_infection 0.002034244
Disease:Wide_range_of_infections 3.078e-81111
GC_Content_Range4:40-60 0.000091466224
GC_Content_Range4:60-100 6.169e-134145
GC_Content_Range7:50-60 0.000201737107
GC_Content_Range7:60-70 1.219e-123134
Genome_Size_Range5:4-6 0.000079757184
Genome_Size_Range5:6-10 0.0006816247
Genome_Size_Range9:4-5 0.00003583696
Genome_Size_Range9:6-8 0.0008310138
Gram_Stain:Gram_Pos 2.289e-857150
Habitat:Aquatic 1.097e-6491
Habitat:Multiple 1.636e-660178
Habitat:Specialized 0.0099651553
Optimal_temp.:- 0.000354739257
Optimal_temp.:30-35 0.000490467
Optimal_temp.:37 0.000373836106
Optimal_temp.:40 0.009671033
Oxygen_Req:Aerobic 3.518e-212185
Oxygen_Req:Facultative 1.999e-3098201
Pathogenic_in:Human 3.334e-872213
Salinity:Non-halophilic 0.000161837106
Shape:Coccus 0.00030083082
Shape:Rod 0.000210891347
Temp._range:Mesophilic 0.0000336116473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 485
Effective number of orgs (counting one per cluster within 468 clusters): 389

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106330
VEIS391735 ncbi Verminephrobacter eiseniae EF01-20
VCHO345073 ncbi Vibrio cholerae O3950
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169610
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79010
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TSP28240 Thermotoga sp.0
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPET390874 ncbi Thermotoga petrophila RKU-10
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
SSP94122 ncbi Shewanella sp. ANA-30
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP644076 Silicibacter sp. TrichCH4B0
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP292414 ncbi Ruegeria sp. TM10400
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSED425104 ncbi Shewanella sediminis HAW-EB30
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPEA398579 ncbi Shewanella pealeana ATCC 7003450
SONE211586 ncbi Shewanella oneidensis MR-10
SMEL266834 ncbi Sinorhizobium meliloti 10210
SMED366394 ncbi Sinorhizobium medicae WSM4190
SMAR399550 ncbi Staphylothermus marinus F10
SLOI323850 ncbi Shewanella loihica PV-40
SLAC55218 Ruegeria lacuscaerulensis0
SHAL458817 ncbi Shewanella halifaxensis HAW-EB40
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23380
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2170
SDEG203122 ncbi Saccharophagus degradans 2-400
SCO ncbi Streptomyces coelicolor A3(2)0
SBAL402882 ncbi Shewanella baltica OS1850
SBAL399599 ncbi Shewanella baltica OS1950
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170250
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170290
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.10
RSP357808 ncbi Roseiflexus sp. RS-10
RSP101510 ncbi Rhodococcus jostii RHA10
RSOL267608 ncbi Ralstonia solanacearum GMI10000
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111701
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-30
RPAL316058 ncbi Rhodopseudomonas palustris HaA20
RPAL316057 ncbi Rhodopseudomonas palustris BisB50
RPAL316056 ncbi Rhodopseudomonas palustris BisB180
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RPAL258594 ncbi Rhodopseudomonas palustris CGA0090
RMET266264 ncbi Ralstonia metallidurans CH340
RMAS416276 ncbi Rickettsia massiliae MTU50
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38410
RFER338969 ncbi Rhodoferax ferrireducens T1180
RFEL315456 ncbi Rickettsia felis URRWXCal20
REUT381666 ncbi Ralstonia eutropha H160
REUT264198 ncbi Ralstonia eutropha JMP1340
RETL347834 ncbi Rhizobium etli CFN 420
RDEN375451 ncbi Roseobacter denitrificans OCh 1140
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30000
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a0
PSTU379731 ncbi Pseudomonas stutzeri A15010
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP296591 ncbi Polaromonas sp. JS6660
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PPUT76869 ncbi Pseudomonas putida GB-10
PPUT351746 ncbi Pseudomonas putida F10
PPUT160488 ncbi Pseudomonas putida KT24400
PNAP365044 ncbi Polaromonas naphthalenivorans CJ20
PMOB403833 ncbi Petrotoga mobilis SJ950
PMEN399739 ncbi Pseudomonas mendocina ymp0
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PING357804 ncbi Psychromonas ingrahamii 370
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PFLU220664 ncbi Pseudomonas fluorescens Pf-50
PFLU216595 ncbi Pseudomonas fluorescens SBW250
PFLU205922 ncbi Pseudomonas fluorescens Pf0-10
PENT384676 ncbi Pseudomonas entomophila L480
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER208964 ncbi Pseudomonas aeruginosa PAO10
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OCAR504832 ncbi Oligotropha carboxidovorans OM50
OANT439375 ncbi Ochrobactrum anthropi ATCC 491880
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP35761 Nocardioides sp.0
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP409 Methylobacterium sp.0
MSP400668 ncbi Marinomonas sp. MWYL10
MSP266779 ncbi Chelativorans sp. BNC10
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1550
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM10
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-11
MLOT266835 ncbi Mesorhizobium loti MAFF3030990
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LCHO395495 ncbi Leptothrix cholodnii SP-60
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
JSP375286 ncbi Janthinobacterium sp. Marseille0
JSP290400 ncbi Jannaschia sp. CCS10
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HINF71421 ncbi Haemophilus influenzae Rd KW200
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HCHE349521 ncbi Hahella chejuensis KCTC 23960
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GURA351605 ncbi Geobacter uraniireducens Rf40
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-20
GSUL243231 ncbi Geobacter sulfurreducens PCA0
GOXY290633 ncbi Gluconobacter oxydans 621H0
GMET269799 ncbi Geobacter metallireducens GS-151
GKAU235909 ncbi Geobacillus kaustophilus HTA4260
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DRED349161 ncbi Desulfotomaculum reducens MI-10
DRAD243230 ncbi Deinococcus radiodurans R10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DHAF138119 ncbi Desulfitobacterium hafniense Y510
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DARO159087 ncbi Dechloromonas aromatica RCB0
CVIO243365 ncbi Chromobacterium violaceum ATCC 124720
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CSP501479 Citreicella sp. SE450
CSAL290398 ncbi Chromohalobacter salexigens DSM 30430
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29010
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CAULO ncbi Caulobacter crescentus CB150
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BWEI315730 ncbi Bacillus weihenstephanensis KBAB40
BVIE269482 ncbi Burkholderia vietnamiensis G40
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHU412694 ncbi Bacillus thuringiensis Al Hakam0
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-270
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BTHA271848 ncbi Burkholderia thailandensis E2640
BSUI470137 ncbi Brucella suis ATCC 234450
BSUI204722 ncbi Brucella suis 13300
BSP376 Bradyrhizobium sp.0
BSP36773 Burkholderia sp.0
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse1
BPUM315750 ncbi Bacillus pumilus SAFR-0320
BPSE320373 ncbi Burkholderia pseudomallei 6680
BPSE320372 ncbi Burkholderia pseudomallei 1710b0
BPSE272560 ncbi Burkholderia pseudomallei K962430
BPET94624 Bordetella petrii0
BPER257313 ncbi Bordetella pertussis Tohama I0
BPAR257311 ncbi Bordetella parapertussis 128220
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23080
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M0
BMAL320389 ncbi Burkholderia mallei NCTC 102470
BMAL320388 ncbi Burkholderia mallei SAVP10
BMAL243160 ncbi Burkholderia mallei ATCC 233440
BLON206672 ncbi Bifidobacterium longum NCC27050
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1100
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-11
BHAL272558 ncbi Bacillus halodurans C-1250
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCER572264 ncbi Bacillus cereus 03BB1020
BCER405917 Bacillus cereus W0
BCER315749 ncbi Bacillus cytotoxicus NVH 391-980
BCER288681 ncbi Bacillus cereus E33L0
BCER226900 ncbi Bacillus cereus ATCC 145790
BCEN331272 ncbi Burkholderia cenocepacia HI24240
BCEN331271 ncbi Burkholderia cenocepacia AU 10540
BCAN483179 ncbi Brucella canis ATCC 233650
BBUR224326 ncbi Borrelia burgdorferi B310
BBRO257310 ncbi Bordetella bronchiseptica RB500
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02480
BANT568206 ncbi Bacillus anthracis CDC 6840
BANT261594 ncbi Bacillus anthracis Ames Ancestor0
BANT260799 ncbi Bacillus anthracis Sterne0
BAMY326423 ncbi Bacillus amyloliquefaciens FZB420
BAMB398577 ncbi Burkholderia ambifaria MC40-60
BAMB339670 ncbi Burkholderia ambifaria AMMD0
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9410
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP62928 ncbi Azoarcus sp. BH720
ASP232721 ncbi Acidovorax sp. JS420
ASP1667 Arthrobacter sp.0
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4490
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
AMET293826 ncbi Alkaliphilus metalliredigens QYMF0
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ACRY349163 ncbi Acidiphilium cryptum JF-50
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ACAU438753 ncbi Azorhizobium caulinodans ORS 5710
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAU360910 ncbi Bordetella avium 197N0
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3450
AAVE397945 ncbi Acidovorax citrulli AAC00-10
AAUR290340 ncbi Arthrobacter aurescens TC10
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G7635   G7632   EG10569   EG10568   EG10567   
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
XAUT78245
WSUC273121
WPIP955
WPIP80849
VPAR223926
VEIS391735
VCHO345073
VCHO
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTUR377629
TTHE300852
TTHE262724
TSP28240
TROS309801
TPET390874
TPAL243276
TMAR243274
TLET416591
TKOD69014
TFUS269800
TERY203124
TELO197221
TDEN326298
TDEN292415
TDEN243275
TCRU317025
TACI273075
SWOL335541
STRO369723
STOK273063
SSP94122
SSP84588
SSP64471
SSP644076
SSP387093
SSP321332
SSP321327
SSP292414
SSP1148
SSP1131
SSOL273057
SSED425104
SSAP342451
SRUB309807
SPEA398579
SONE211586
SMEL266834
SMED366394
SMAR399550
SLOI323850
SLAC55218
SHAL458817
SHAE279808
SFUM335543
SERY405948
SEPI176280
SEPI176279
SELO269084
SDEN318161
SDEG203122
SCO
SBAL402882
SBAL399599
SAVE227882
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037
SALA317655
SACI330779
RXYL266117
RTYP257363
RSPH349102
RSPH349101
RSPH272943
RSP357808
RSP101510
RSOL267608
RSAL288705
RRUB269796 RRU_A3447
RRIC452659
RRIC392021
RPRO272947
RPOM246200
RPAL316058
RPAL316057
RPAL316056
RPAL316055
RPAL258594
RMET266264
RMAS416276
RLEG216596
RFER338969
RFEL315456
REUT381666
REUT264198
RETL347834
RDEN375451
RCON272944
RCAS383372
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PTHE370438
PSYR223283
PSYR205918
PSTU379731
PSP56811
PSP312153
PSP296591
PSP117
PRUM264731
PPUT76869
PPUT351746
PPUT160488
PNAP365044
PMOB403833
PMEN399739
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PING357804
PHOR70601
PHAL326442
PGIN242619
PFUR186497
PFLU220664
PFLU216595
PFLU205922
PENT384676
PDIS435591
PCRY335284
PATL342610
PAST100379
PARS340102
PARC259536
PAER208964
PAER208963
PAER178306
PACN267747
PABY272844
OTSU357244
OCAR504832
OANT439375
NWIN323098
NSP387092
NSP35761
NSP103690
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NFAR247156
NEUT335283
NEUR228410
NARO279238
MVAN350058
MTUB419947
MTUB336982
MTHE349307
MTHE264732
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP409
MSP400668
MSP266779
MSP189918
MSP164757
MSP164756
MSME246196
MSED399549
MPUL272635
MPNE272634
MPET420662
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407
MMAR267377
MMAG342108 AMB4395
MLOT266835
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MFLA265072
MEXT419610
MCAP340047
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAQU351348
MAER449447
MAEO419665
MACE188937
MABS561007
LXYL281090
LSPH444177
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LINT363253
LINT267671
LINT189518
LCHO395495
LBOR355277
LBOR355276
LBIF456481
LBIF355278
KRAD266940
JSP375286
JSP290400
ILOI283942
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032
HMUK485914
HMOD498761
HMAR272569
HINF71421
HINF374930
HINF281310
HHEP235279
HHAL349124
HCHE349521
HBUT415426
HAUR316274
HARS204773
HACI382638
GVIO251221
GURA351605
GTHE420246
GSUL243231
GOXY290633
GMET269799 GMET_1287
GKAU235909
GFOR411154
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855
FSP106370
FRANT
FPHI484022
FNOD381764
FMAG334413
FJOH376686
FALN326424
ERUM302409
ERUM254945
ELIT314225
ECHA205920
ECAN269484
DSP255470
DSP216389
DSHI398580
DRED349161
DRAD243230
DPSY177439
DOLE96561
DNOD246195
DHAF138119
DGEO319795
DETH243164
DARO159087
CVIO243365
CVES412965
CTRA471473
CTRA471472
CTET212717
CTEP194439
CSUL444179
CSP78
CSP501479
CSAL290398
CRUT413404
CPSY167879
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPEL335992
CNOV386415
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CJAP155077
CHYD246194
CHUT269798
CHOM360107
CGLU196627
CFET360106
CFEL264202
CEFF196164
CDIP257309
CDES477974
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT498213
CBOT441772
CAULO
CABO218497
BXEN266265
BWEI315730
BVIE269482
BTUR314724
BTRI382640
BTHU412694
BTHU281309
BTHE226186
BTHA271848
BSUI470137
BSUI204722
BSP376
BSP36773
BSP107806
BQUI283165 BQ00530
BPUM315750
BPSE320373
BPSE320372
BPSE272560
BPET94624
BPER257313
BPAR257311
BOVI236
BMEL359391
BMEL224914
BMAL320389
BMAL320388
BMAL243160
BLON206672
BJAP224911
BHER314723
BHEN283166 BH00590
BHAL272558
BGAR290434
BFRA295405
BFRA272559
BCER572264
BCER405917
BCER315749
BCER288681
BCER226900
BCEN331272
BCEN331271
BCAN483179
BBUR224326
BBRO257310
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BANT592021
BANT568206
BANT261594
BANT260799
BAMY326423
BAMB398577
BAMB339670
BAFZ390236
BABO262698
AYEL322098
AVAR240292
AURANTIMONAS
ASP76114
ASP62977
ASP62928
ASP232721
ASP1667
ASAL382245
APHA212042
APER272557
AORE350688
AMET293826
AMAR329726
AMAR234826
ALAI441768
AFUL224325
AFER243159
AEHR187272
ACRY349163
ACEL351607
ACAU438753
ABUT367737
ABOR393595
ABAU360910
ABAC204669
AAVE397945
AAUR290340
AAEO224324


Organism features enriched in list (features available for 454 out of the 485 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 2.114e-163992
Arrangment:Pairs 6.776e-767112
Disease:Gastroenteritis 0.0002838413
Disease:Pneumonia 0.0001105312
GC_Content_Range4:40-60 0.0000742156224
GC_Content_Range4:60-100 1.599e-13141145
GC_Content_Range7:50-60 0.000075068107
GC_Content_Range7:60-70 3.466e-13131134
Genome_Size_Range5:4-6 0.0001112126184
Genome_Size_Range5:6-10 0.00047944547
Genome_Size_Range9:4-5 0.00002935996
Genome_Size_Range9:6-8 0.00061163738
Gram_Stain:Gram_Pos 9.579e-991150
Habitat:Aquatic 5.351e-78791
Habitat:Multiple 3.447e-7115178
Habitat:Specialized 0.00749874853
Optimal_temp.:- 0.0001139218257
Optimal_temp.:25-30 0.00792991919
Optimal_temp.:30-35 0.000589517
Optimal_temp.:37 0.000058767106
Oxygen_Req:Aerobic 4.829e-22183185
Oxygen_Req:Facultative 2.305e-29102201
Pathogenic_in:Human 2.500e-8139213
Salinity:Non-halophilic 0.000331069106
Shape:Coccus 0.00054235282
Shape:Rod 0.0000704252347
Shape:Sphere 0.00792991919
Shape:Spiral 0.00015243434
Temp._range:Mesophilic 0.0000166353473



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 1
Effective number of orgs (counting one per cluster within 468 clusters): 1

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
TPEN368408 ncbi Thermofilum pendens Hrk 5 0.00081313455


Names of the homologs of the genes in the group in each of these orgs
  G7635   G7632   EG10569   EG10568   EG10567   
TPEN368408 TPEN_1100TPEN_1097TPEN_1100TPEN_1100TPEN_1097


Organism features enriched in list (features available for 1 out of the 1 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Optimal_temp.:88 0.001715311



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GLCMANNANAUT-PWY (superpathway of N-acetylglucosamine, N-acetylmannosamine and N-acetylneuraminate degradation)134870.5567
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))121820.5562
PWY0-1324 (N-acetylneuraminate and N-acetylmannosamine degradation)135870.5532
P441-PWY (superpathway of N-acetylneuraminate degradation)63560.5528
PWY0-301 (L-ascorbate degradation, anaerobic)84660.5513
LYXMET-PWY (L-lyxose degradation)87650.5247
PWY0-1314 (fructose degradation)2241060.4749
RHAMCAT-PWY (rhamnose degradation)91620.4722
PWY-5480 (pyruvate fermentation to ethanol I)109690.4715
PWY-5493 (reductive monocarboxylic acid cycle)2431100.4668
PWY0-1295 (pyrimidine ribonucleosides degradation I)2391070.4509
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45390.4448
ARABCAT-PWY (L-arabinose degradation I)128730.4428
GLYCEROLMETAB-PWY (glycerol degradation V)116680.4351
SUCUTIL-PWY (sucrose degradation I)124700.4270
ASPARAGINESYN-PWY (asparagine biosynthesis II)2401040.4247
GALACTITOLCAT-PWY (galactitol degradation)73500.4192
MANNIDEG-PWY (mannitol degradation I)99590.4057
METHIONINE-DEG1-PWY (methionine degradation I (to homocysteine))31510-.4485



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7632   EG10569   EG10568   EG10567   
G76350.9995740.9995030.9993980.999386
G76320.9993020.9993860.999494
EG105690.9996750.999609
EG105680.999662
EG10567



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PAIRWISE BLAST SCORES:

  G7635   G7632   EG10569   EG10568   EG10567   
G76350.0f0-2.6e-34--
G7632-0.0f0--4.1e-22
EG105694.2e-36-0.0f0--
EG10568---0.0f0-
EG10567-4.1e-22--0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- CPLX-165 (mannose PTS permease) (degree of match pw to cand: 0.600, degree of match cand to pw: 0.600, average score: 0.876)
  Genes in pathway or complex:
   *in cand* 0.9996 0.9993 EG10569 (manZ) MANZ-MONOMER (ManZ)
   *in cand* 0.9996 0.9994 EG10568 (manY) MANY-MONOMER (ManY)
   *in cand* 0.9996 0.9994 EG10567 (manX) MANX-MONOMER (ManX)
             0.8584 0.5608 EG10788 (ptsH) PTSH-MONOMER (HPr)
             0.7976 0.3851 EG10789 (ptsI) PTSI-MONOMER (PTS enzyme I)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9993 G7632 (agaV) G7632-MONOMER (PTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA))
   *in cand* 0.9996 0.9994 G7635 (agaD) AGAD-MONOMER (AgaD)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10567 EG10568 EG10569 (centered at EG10568)
G7635 (centered at G7635)
G7632 (centered at G7632)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7635   G7632   EG10569   EG10568   EG10567   
137/623134/623138/623130/623140/623
ADEH290397:0:Tyes313-0
AHYD196024:0:Tyes02150212
ANAE240017:0:Tyes02012
APLE416269:0:Tyes20210
APLE434271:0:Tno20210
BCIC186490:0:Tyes02012
BCLA66692:0:Tyes20210
BHEN283166:0:Tyes----0
BLIC279010:0:Tyes02012
BQUI283165:0:Tyes----0
BSUB:0:Tyes02012
CACE272562:0:Tyes20210
CBEI290402:0:Tyes21572159412430930
CBLO203907:0:Tyes20210
CBLO291272:0:Tno20210
CBOT36826:1:Tno0-0--
CBOT441770:0:Tyes0-0--
CBOT441771:0:Tno0-0--
CBOT508765:1:Tyes17421744210
CBOT515621:2:Tyes20210
CBOT536232:0:Tno20210
CDIF272563:1:Tyes2830028305972620
CPER195102:1:Tyes05030504503
CPER195103:0:Tno4130413412411
CPER289380:3:Tyes4030403402401
DDES207559:0:Tyes-6940-694
DVUL882:1:Tyes08000-800
ECAR218491:0:Tyes20210
ECOL199310:0:Tno16471638310
ECOL316407:0:Tno13071301210
ECOL331111:6:Tno15101501210
ECOL362663:0:Tno14791470210
ECOL364106:1:Tno15541545310
ECOL405955:2:Tyes14961487210
ECOL409438:6:Tyes14671458210
ECOL413997:0:Tno12391230210
ECOL439855:4:Tno20132004012
ECOL469008:0:Tno09123412351236
ECOL481805:0:Tno09126312649
ECOL585034:0:Tno13921383210
ECOL585035:0:Tno16091600210
ECOL585055:0:Tno15441535210
ECOL585056:2:Tno15181509210
ECOL585057:0:Tno24012392012
ECOL585397:0:Tno17531744210
ECOL83334:0:Tno15331525210
ECOLI:0:Tno13451338210
ECOO157:0:Tno15041495210
EFAE226185:3:Tyes28352838210
EFER585054:1:Tyes30563065012
ESP42895:1:Tyes12121204210
FNUC190304:0:Tyes02012
GMET269799:1:Tyes----0
HDUC233412:0:Tyes02012
HSOM205914:1:Tyes02012
HSOM228400:0:Tno02012
KPNE272620:2:Tyes20210
LACI272621:0:Tyes20210
LBRE387344:2:Tyes1-10-
LCAS321967:1:Tyes1540154155156
LDEL321956:0:Tyes02012
LDEL390333:0:Tyes02012
LGAS324831:0:Tyes02012
LHEL405566:0:Tyes20210
LINN272626:1:Tno26466446450
LJOH257314:0:Tyes02012
LLAC272622:5:Tyes20210
LLAC272623:0:Tyes20210
LMES203120:1:Tyes02012
LMON169963:0:Tno26976956960
LMON265669:0:Tyes206786790
LPLA220668:0:Tyes17701772210
LSAK314315:0:Tyes20210
LWEL386043:0:Tyes26606586590
MMAG342108:0:Tyes----0
MSUC221988:0:Tyes02012
MXAN246197:0:Tyes020-3
OIHE221109:0:Tyes02012
PCAR338963:0:Tyes02012
PLUM243265:0:Fyes20190619051904
PMUL272843:1:Tyes02012
PPEN278197:0:Tyes20126912701271
PPRO298386:1:Tyes20210
RRUB269796:1:Tyes----0
SACI56780:0:Tyes06750-676
SAGA205921:0:Tno02012
SAGA208435:0:Tno15081510012
SAGA211110:0:Tyes15251527012
SBOY300268:1:Tyes20210
SDYS300267:1:Tyes10121880
SENT209261:0:Tno02012
SENT220341:0:Tno20210
SENT295319:0:Tno02012
SENT321314:2:Tno20210
SENT454169:2:Tno01300130213011300
SFLE198214:0:Tyes16831675012
SFLE373384:0:Tno02012
SGLO343509:3:Tyes01125012
SGOR29390:0:Tyes16090160916081607
SHIGELLA:0:Tno16011593012
SMUT210007:0:Tyes20210
SPNE1313:0:Tyes3028012
SPNE170187:0:Tyes3028012
SPNE171101:0:Tno3634012
SPNE487213:0:Tno4745012
SPNE487214:0:Tno3836012
SPNE488221:0:Tno4846012
SPRO399741:1:Tyes10501052210
SPYO160490:0:Tno02904903902
SPYO186103:0:Tno02969968967
SPYO193567:0:Tno10741072012
SPYO198466:0:Tno02107010691068
SPYO286636:0:Tno02952951950
SPYO293653:0:Tno02969968967
SPYO319701:0:Tyes02978977976
SPYO370551:0:Tno02986985984
SPYO370552:0:Tno02104810471046
SPYO370553:0:Tno02991990989
SPYO370554:0:Tyes02101610151014
SSON300269:1:Tyes02012
SSUI391295:0:Tyes02566565564
SSUI391296:0:Tyes02561560559
STHE264199:0:Tyes02012
STHE292459:0:Tyes0231312
STHE299768:0:Tno02012
STHE322159:2:Tyes02012
STYP99287:1:Tyes01242124412431242
TPEN368408:1:Tyes30330
TPSE340099:0:Tyes10120
TSP1755:0:Tyes12102
TTEN273068:0:Tyes10110
VFIS312309:1:Tyes02012
VVUL196600:1:Tyes02012
VVUL216895:0:Tno02012
YENT393305:1:Tyes0936934935936
YPES187410:5:Tno683681210
YPES214092:3:Tno20892893894
YPES349746:2:Tno16801682168010
YPES360102:3:Tyes02710711712
YPES377628:2:Tno689687210
YPES386656:2:Tno02685684683
YPSE273123:2:Tno14591457012
YPSE349747:2:Tno02141914181417



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