CANDIDATE ID: 230

CANDIDATE ID: 230

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9975020e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages




GENE LIST:

- EG10595 (miaA) (b4171)
   Products of gene:
     - EG10595-MONOMER (tRNA(i6A37) synthase)
       Reactions:
        a tRNA + dimethylallyl diphosphate  =  a tRNA containing N6-dimethylallyladenosine + diphosphate
         In pathways
         PWY-2781 (PWY-2781)

- EG10438 (hfq) (b4172)
   Products of gene:
     - EG10438-MONOMER (RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins)
     - CPLX0-1461 (HF-I, host factor for RNA phage Q β replication)

- EG10437 (hflX) (b4173)
   Products of gene:
     - EG10437-MONOMER (GTPase associated with the 50S subunit of the ribosome)
       Reactions:
        GTP + H2O  ->  GDP + phosphate + H+

- EG10436 (hflK) (b4174)
   Products of gene:
     - EG10436-MONOMER (regulator of FtsH protease)
     - CPLX0-1321 (HflK-HflC complex; regulator of FtsH protease)
     - CPLX0-2982 (HflB, integral membrane ATP-dependent zinc metallopeptidase)
       Reactions:
        EC# 3.4.24.-

- EG10435 (hflC) (b4175)
   Products of gene:
     - EG10435-MONOMER (regulator of FtsH protease)
     - CPLX0-1321 (HflK-HflC complex; regulator of FtsH protease)
     - CPLX0-2982 (HflB, integral membrane ATP-dependent zinc metallopeptidase)
       Reactions:
        EC# 3.4.24.-



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 287
Effective number of orgs (counting one per cluster within 468 clusters): 201

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A5
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110185
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103315
XFAS405440 ncbi Xylella fastidiosa M125
XFAS183190 ncbi Xylella fastidiosa Temecula15
XFAS160492 ncbi Xylella fastidiosa 9a5c5
XCAM487884 Xanthomonas campestris pv. paulliniae5
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-105
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80045
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339135
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3065
XAUT78245 ncbi Xanthobacter autotrophicus Py25
VVUL216895 ncbi Vibrio vulnificus CMCP65
VVUL196600 ncbi Vibrio vulnificus YJ0165
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106335
VFIS312309 ncbi Vibrio fischeri ES1145
VEIS391735 ncbi Verminephrobacter eiseniae EF01-25
VCHO345073 ncbi Vibrio cholerae O3955
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169615
TTUR377629 ncbi Teredinibacter turnerae T79015
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB44
TSP28240 Thermotoga sp.5
TPET390874 ncbi Thermotoga petrophila RKU-15
TMAR243274 ncbi Thermotoga maritima MSB85
TLET416591 ncbi Thermotoga lettingae TMO4
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252595
TCRU317025 ncbi Thiomicrospira crunogena XCL-25
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen4
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
STRO369723 ncbi Salinispora tropica CNB-4404
STHE292459 ncbi Symbiobacterium thermophilum IAM 148635
SSP94122 ncbi Shewanella sp. ANA-35
SSP644076 Silicibacter sp. TrichCH4B4
SSP292414 ncbi Ruegeria sp. TM10404
SSON300269 ncbi Shigella sonnei Ss0465
SSED425104 ncbi Shewanella sediminis HAW-EB35
SPRO399741 ncbi Serratia proteamaculans 5685
SPEA398579 ncbi Shewanella pealeana ATCC 7003455
SONE211586 ncbi Shewanella oneidensis MR-15
SMEL266834 ncbi Sinorhizobium meliloti 10215
SMED366394 ncbi Sinorhizobium medicae WSM4195
SLOI323850 ncbi Shewanella loihica PV-45
SLAC55218 Ruegeria lacuscaerulensis4
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SHAL458817 ncbi Shewanella halifaxensis HAW-EB45
SGLO343509 ncbi Sodalis glossinidius morsitans5
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB4
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23384
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SDYS300267 ncbi Shigella dysenteriae Sd1975
SDEN318161 ncbi Shewanella denitrificans OS2175
SDEG203122 ncbi Saccharophagus degradans 2-405
SCO ncbi Streptomyces coelicolor A3(2)4
SBOY300268 ncbi Shigella boydii Sb2275
SBAL402882 ncbi Shewanella baltica OS1855
SBAL399599 ncbi Shewanella baltica OS1955
SARE391037 ncbi Salinispora arenicola CNS-2054
SALA317655 ncbi Sphingopyxis alaskensis RB22564
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170254
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170294
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.14
RSOL267608 ncbi Ralstonia solanacearum GMI10005
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111705
RPOM246200 ncbi Ruegeria pomeroyi DSS-34
RPAL316058 ncbi Rhodopseudomonas palustris HaA25
RPAL316057 ncbi Rhodopseudomonas palustris BisB55
RPAL316056 ncbi Rhodopseudomonas palustris BisB185
RPAL316055 ncbi Rhodopseudomonas palustris BisA535
RPAL258594 ncbi Rhodopseudomonas palustris CGA0095
RMET266264 ncbi Ralstonia metallidurans CH345
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38415
RFER338969 ncbi Rhodoferax ferrireducens T1185
REUT381666 ncbi Ralstonia eutropha H165
REUT264198 ncbi Ralstonia eutropha JMP1345
RETL347834 ncbi Rhizobium etli CFN 425
RDEN375451 ncbi Roseobacter denitrificans OCh 1144
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30005
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a5
PSTU379731 ncbi Pseudomonas stutzeri A15015
PSP56811 Psychrobacter sp.4
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-15
PSP296591 ncbi Polaromonas sp. JS6665
PPUT76869 ncbi Pseudomonas putida GB-15
PPUT351746 ncbi Pseudomonas putida F15
PPUT160488 ncbi Pseudomonas putida KT24405
PPRO298386 ncbi Photobacterium profundum SS95
PNAP365044 ncbi Polaromonas naphthalenivorans CJ25
PMUL272843 ncbi Pasteurella multocida multocida Pm705
PMOB403833 ncbi Petrotoga mobilis SJ954
PMEN399739 ncbi Pseudomonas mendocina ymp5
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO15
PING357804 ncbi Psychromonas ingrahamii 375
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1255
PFLU220664 ncbi Pseudomonas fluorescens Pf-55
PFLU216595 ncbi Pseudomonas fluorescens SBW255
PFLU205922 ncbi Pseudomonas fluorescens Pf0-15
PENT384676 ncbi Pseudomonas entomophila L485
PCRY335284 ncbi Psychrobacter cryohalolentis K54
PCAR338963 ncbi Pelobacter carbinolicus DSM 23805
PATL342610 ncbi Pseudoalteromonas atlantica T6c5
PARC259536 ncbi Psychrobacter arcticus 273-44
PAER208964 ncbi Pseudomonas aeruginosa PAO15
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA145
OCAR504832 ncbi Oligotropha carboxidovorans OM55
OANT439375 ncbi Ochrobactrum anthropi ATCC 491885
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2555
NSP35761 Nocardioides sp.4
NOCE323261 ncbi Nitrosococcus oceani ATCC 197075
NMUL323848 ncbi Nitrosospira multiformis ATCC 251965
NHAM323097 ncbi Nitrobacter hamburgensis X145
NEUT335283 ncbi Nitrosomonas eutropha C915
NEUR228410 ncbi Nitrosomonas europaea ATCC 197185
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124444
MXAN246197 ncbi Myxococcus xanthus DK 16224
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E5
MSP409 Methylobacterium sp.5
MSP400668 ncbi Marinomonas sp. MWYL15
MSP266779 ncbi Chelativorans sp. BNC15
MPET420662 ncbi Methylibium petroleiphilum PM15
MMAR394221 ncbi Maricaulis maris MCS105
MMAG342108 ncbi Magnetospirillum magneticum AMB-15
MLOT266835 ncbi Mesorhizobium loti MAFF3030995
MFLA265072 ncbi Methylobacillus flagellatus KT5
MEXT419610 ncbi Methylobacterium extorquens PA15
MCAP243233 ncbi Methylococcus capsulatus Bath5
MAQU351348 ncbi Marinobacter aquaeolei VT85
LSPH444177 ncbi Lysinibacillus sphaericus C3-414
LPNE400673 ncbi Legionella pneumophila Corby5
LPNE297246 ncbi Legionella pneumophila Paris5
LPNE297245 ncbi Legionella pneumophila Lens5
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 15
LCHO395495 ncbi Leptothrix cholodnii SP-65
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
JSP375286 ncbi Janthinobacterium sp. Marseille5
JSP290400 ncbi Jannaschia sp. CCS14
ILOI283942 ncbi Idiomarina loihiensis L2TR5
HSOM228400 ncbi Haemophilus somnus 23365
HSOM205914 ncbi Haemophilus somnus 129PT5
HNEP81032 Hyphomonas neptunium5
HINF71421 ncbi Haemophilus influenzae Rd KW204
HINF374930 ncbi Haemophilus influenzae PittEE4
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HHAL349124 ncbi Halorhodospira halophila SL15
HDUC233412 ncbi Haemophilus ducreyi 35000HP5
HCHE349521 ncbi Hahella chejuensis KCTC 23965
HARS204773 ncbi Herminiimonas arsenicoxydans5
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-005
FTUL418136 ncbi Francisella tularensis tularensis WY96-34185
FTUL401614 ncbi Francisella novicida U1125
FTUL393115 ncbi Francisella tularensis tularensis FSC1985
FTUL393011 ncbi Francisella tularensis holarctica OSU185
FTUL351581 Francisella tularensis holarctica FSC2005
FRANT ncbi Francisella tularensis tularensis SCHU S45
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250175
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B14
ESP42895 Enterobacter sp.5
ELIT314225 ncbi Erythrobacter litoralis HTCC25945
EFER585054 ncbi Escherichia fergusonii ATCC 354695
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough4
DSHI398580 ncbi Dinoroseobacter shibae DFL 124
DPSY177439 ncbi Desulfotalea psychrophila LSv544
DNOD246195 ncbi Dichelobacter nodosus VCS1703A5
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G204
DARO159087 ncbi Dechloromonas aromatica RCB5
CVIO243365 ncbi Chromobacterium violaceum ATCC 124725
CTET212717 ncbi Clostridium tetani E884
CSP78 Caulobacter sp.5
CSP501479 Citreicella sp. SE454
CSAL290398 ncbi Chromohalobacter salexigens DSM 30435
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)4
CPSY167879 ncbi Colwellia psychrerythraea 34H5
CPHY357809 ncbi Clostridium phytofermentans ISDg4
CPER289380 ncbi Clostridium perfringens SM1014
CPER195103 ncbi Clostridium perfringens ATCC 131244
CPER195102 ncbi Clostridium perfringens 134
CNOV386415 ncbi Clostridium novyi NT4
CKLU431943 ncbi Clostridium kluyveri DSM 5554
CJAP155077 Cellvibrio japonicus5
CDIF272563 ncbi Clostridium difficile 6304
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto4
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6574
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B4
CBOT498213 ncbi Clostridium botulinum B1 str. Okra5
CBOT441772 ncbi Clostridium botulinum F str. Langeland4
CBOT441771 ncbi Clostridium botulinum A str. Hall4
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193974
CBOT36826 Clostridium botulinum A4
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN5
CBLO203907 ncbi Candidatus Blochmannia floridanus4
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80524
CACE272562 ncbi Clostridium acetobutylicum ATCC 8245
BWEI315730 ncbi Bacillus weihenstephanensis KBAB45
BVIE269482 ncbi Burkholderia vietnamiensis G45
BTRI382640 ncbi Bartonella tribocorum CIP 1054764
BTHU412694 ncbi Bacillus thuringiensis Al Hakam5
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-275
BTHA271848 ncbi Burkholderia thailandensis E2645
BSUI470137 ncbi Brucella suis ATCC 234455
BSUI204722 ncbi Brucella suis 13305
BSP376 Bradyrhizobium sp.5
BSP36773 Burkholderia sp.5
BQUI283165 ncbi Bartonella quintana Toulouse4
BPSE320373 ncbi Burkholderia pseudomallei 6685
BPSE320372 ncbi Burkholderia pseudomallei 1710b5
BPSE272560 ncbi Burkholderia pseudomallei K962435
BPET94624 Bordetella petrii5
BPER257313 ncbi Bordetella pertussis Tohama I5
BPAR257311 ncbi Bordetella parapertussis 128225
BOVI236 Brucella ovis5
BMEL359391 ncbi Brucella melitensis biovar Abortus 23085
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M5
BMAL320389 ncbi Burkholderia mallei NCTC 102475
BMAL320388 ncbi Burkholderia mallei SAVP15
BMAL243160 ncbi Burkholderia mallei ATCC 233445
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1105
BHEN283166 ncbi Bartonella henselae Houston-14
BHAL272558 ncbi Bacillus halodurans C-1254
BCIC186490 Candidatus Baumannia cicadellinicola5
BCER572264 ncbi Bacillus cereus 03BB1025
BCER405917 Bacillus cereus W5
BCER315749 ncbi Bacillus cytotoxicus NVH 391-985
BCER288681 ncbi Bacillus cereus E33L5
BCER226900 ncbi Bacillus cereus ATCC 145795
BCEN331272 ncbi Burkholderia cenocepacia HI24245
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BCAN483179 ncbi Brucella canis ATCC 233655
BBRO257310 ncbi Bordetella bronchiseptica RB505
BBAC360095 ncbi Bartonella bacilliformis KC5834
BANT592021 ncbi Bacillus anthracis A02485
BANT568206 ncbi Bacillus anthracis CDC 6845
BANT261594 ncbi Bacillus anthracis Ames Ancestor5
BANT260799 ncbi Bacillus anthracis Sterne5
BAMB398577 ncbi Burkholderia ambifaria MC40-65
BAMB339670 ncbi Burkholderia ambifaria AMMD5
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9415
ASP76114 ncbi Aromatoleum aromaticum EbN15
ASP62977 ncbi Acinetobacter sp. ADP14
ASP62928 ncbi Azoarcus sp. BH725
ASP232721 ncbi Acidovorax sp. JS425
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4495
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL035
APLE416269 ncbi Actinobacillus pleuropneumoniae L205
ANAE240017 Actinomyces oris MG14
AMET293826 ncbi Alkaliphilus metalliredigens QYMF4
AHYD196024 Aeromonas hydrophila dhakensis5
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232705
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-15
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C4
ACAU438753 ncbi Azorhizobium caulinodans ORS 5715
ABOR393595 ncbi Alcanivorax borkumensis SK25
ABAU360910 ncbi Bordetella avium 197N5
AAVE397945 ncbi Acidovorax citrulli AAC00-15


Names of the homologs of the genes in the group in each of these orgs
  EG10595   EG10438   EG10437   EG10436   EG10435   
YPSE349747 YPSIP31758_3654YPSIP31758_3653YPSIP31758_3652YPSIP31758_3651YPSIP31758_3650
YPSE273123 YPTB0424YPTB0425YPTB0426YPTB0427YPTB0428
YPES386656 YPDSF_3602YPDSF_3601YPDSF_3600YPDSF_3599YPDSF_3598
YPES377628 YPN_3299YPN_3298YPN_3297YPN_3296YPN_3295
YPES360102 YPA_3912YPA_3911YPA_3910YPA_3909YPA_3908
YPES349746 YPANGOLA_A0700YPANGOLA_A0699YPANGOLA_A0698YPANGOLA_A0697YPANGOLA_A0696
YPES214092 YPO0372YPO0373YPO0374YPO0375YPO0376
YPES187410 Y0629Y0630Y0632Y0633Y0634
YENT393305 YE0376YE0377YE0378YE0379YE0380
XORY360094 XOOORF_1720XOOORF_1721XOOORF_1722XOOORF_4490XOOORF_4489
XORY342109 XOO2799XOO2798XOO2797XOO0837XOO0838
XORY291331 XOO2947XOO2946XOO2945XOO0912XOO0913
XFAS405440 XFASM12_0071XFASM12_0070XFASM12_0069XFASM12_1787XFASM12_1786
XFAS183190 PD_0067PD_0066PD_0065PD_1630PD_1629
XFAS160492 XF0090XF0089XF0088XF0452XF0453
XCAM487884 XCC-B100_2544XCC-B100_2543XCC-B100_2542XCC-B100_3294XCC-B100_3293
XCAM316273 XCAORF_1951XCAORF_1952XCAORF_1953XCAORF_1254XCAORF_1255
XCAM314565 XC_2516XC_2515XC_2514XC_3196XC_3195
XCAM190485 XCC1715XCC1716XCC1717XCC1050XCC1051
XAXO190486 XAC1734XAC1735XAC1736XAC1155XAC1156
XAUT78245 XAUT_1659XAUT_4393XAUT_4392XAUT_1664XAUT_3385
VVUL216895 VV1_1293VV1_1294VV1_1295VV1_1296VV1_1297
VVUL196600 VV3072VV3071VV3070VV3069VV3068
VPAR223926 VP2818VP2817VP2816VP2815VP2814
VFIS312309 VF2324VF2323VF2322VF2321VF2320
VEIS391735 VEIS_4227VEIS_0075VEIS_0074VEIS_0073VEIS_0072
VCHO345073 VC0395_A2757VC0395_A2758VC0395_A2759VC0395_A2760VC0395_A2761
VCHO VC0346VC0347VC0348VC0349VC0350
TTUR377629 TERTU_3559TERTU_3558TERTU_3557TERTU_3556TERTU_3554
TTEN273068 TTE1359TTE1360TTE1127TTE0384
TSP28240 TRQ2_0412TRQ2_0411TRQ2_0410TRQ2_0999TRQ2_0998
TPET390874 TPET_0396TPET_0395TPET_0394TPET_1107TPET_1108
TMAR243274 TM_0525TM_0526TM_0527TM_1822TM_1823
TLET416591 TLET_0781TLET_0782TLET_0975TLET_0976
TDEN292415 TBD_1512TBD_1533TBD_0602TBD_0603TBD_0604
TCRU317025 TCR_1085TCR_1086TCR_1087TCR_1090TCR_1091
SWOL335541 SWOL_0979SWOL_0980SWOL_1863SWOL_1863
STYP99287 STM4360STM4361STM4362STM4363STM4364
STRO369723 STROP_1445STROP_1449STROP_3018STROP_3018
STHE292459 STH1747STH1746STH2123STH1977STH1976
SSP94122 SHEWANA3_0596SHEWANA3_0597SHEWANA3_0598SHEWANA3_0599SHEWANA3_0600
SSP644076 SCH4B_2287SCH4B_2288SCH4B_1779SCH4B_1780
SSP292414 TM1040_1356TM1040_1355TM1040_1956TM1040_1955
SSON300269 SSO_4356SSO_4357SSO_4358SSO_4359SSO_4360
SSED425104 SSED_0796SSED_0797SSED_0798SSED_0799SSED_0800
SPRO399741 SPRO_0430SPRO_0431SPRO_0432SPRO_0433SPRO_0434
SPEA398579 SPEA_3541SPEA_3540SPEA_3539SPEA_3538SPEA_3537
SONE211586 SO_0602SO_0603SO_0604SO_0605SO_0606
SMEL266834 SMC01435SMC01048SMC01049SMC01441SMC01440
SMED366394 SMED_2011SMED_1095SMED_1096SMED_2018SMED_2017
SLOI323850 SHEW_0565SHEW_0566SHEW_0567SHEW_0568SHEW_0569
SLAC55218 SL1157_2690SL1157_2691SL1157_2344SL1157_2345
SHIGELLA MIAAHFQHFLXHFLKHFLC
SHAL458817 SHAL_3635SHAL_3634SHAL_3633SHAL_3632SHAL_3631
SGLO343509 SG0336SG0337SG0338SG0339SG0340
SFUM335543 SFUM_1920SFUM_3183SFUM_0184SFUM_0185
SFLE373384 SFV_4329SFV_4330SFV_4331SFV_4332SFV_4333
SFLE198214 AAN45743.1AAN45744.1AAN45745.1AAN45746.1AAN45747.1
SERY405948 SACE_1752SACE_1754SACE_2493SACE_2493
SENT454169 SEHA_C4778SEHA_C4779SEHA_C4780SEHA_C4781SEHA_C4782
SENT321314 SCH_4236SCH_4237SCH_4238SCH_4239SCH_4240
SENT295319 SPA4177SPA4178SPA4179SPA4180SPA4181
SENT220341 STY4717STY4718STY4719STY4720STY4721
SENT209261 T4411T4412T4413T4414T4415
SDYS300267 SDY_4418SDY_4417SDY_4416SDY_4415SDY_4414
SDEN318161 SDEN_3206SDEN_3205SDEN_3204SDEN_3203SDEN_3202
SDEG203122 SDE_2668SDE_2667SDE_2666SDE_2665SDE_2664
SCO SCO5791SCO5796SCO1796SCO7227
SBOY300268 SBO_4285SBO_4284SBO_4283SBO_4282SBO_4281
SBAL402882 SHEW185_3768SHEW185_3767SHEW185_3766SHEW185_3765SHEW185_3764
SBAL399599 SBAL195_3894SBAL195_3893SBAL195_3892SBAL195_3891SBAL195_3890
SARE391037 SARE_1403SARE_1407SARE_3244SARE_3244
SALA317655 SALA_1469SALA_1272SALA_2249SALA_2248
RSPH349102 RSPH17025_1493RSPH17025_1494RSPH17025_0885RSPH17025_0886
RSPH349101 RSPH17029_1451RSPH17029_1450RSPH17029_2001RSPH17029_2000
RSPH272943 RSP_2843RSP_2844RSP_0357RSP_0356
RSOL267608 RSC2564RSC1220RSC1221RSC1222RSC1223
RRUB269796 RRU_A0466RRU_A1684RRU_A1685RRU_A2203RRU_A2202
RPOM246200 SPO_2081SPO_2080SPO_1329SPO_1330
RPAL316058 RPB_3346RPB_2878RPB_2877RPB_2038RPB_2039
RPAL316057 RPD_2097RPD_2594RPD_2595RPD_3352RPD_3351
RPAL316056 RPC_3256RPC_2582RPC_2583RPC_3262RPC_3261
RPAL316055 RPE_2186RPE_2762RPE_2763RPE_2178RPE_2179
RPAL258594 RPA2030RPA2597RPA2598RPA3491RPA3490
RMET266264 RMET_2909RMET_2101RMET_2100RMET_2099RMET_2098
RLEG216596 RL3249RL2284RL2285RL3254RL3253
RFER338969 RFER_1535RFER_2302RFER_2301RFER_2300RFER_2299
REUT381666 H16_A3070H16_A2359H16_A2358H16_A2357H16_A2356
REUT264198 REUT_A2770REUT_A2081REUT_A2080REUT_A2079REUT_A2078
RETL347834 RHE_CH02793RHE_CH01954RHE_CH01955RHE_CH02797RHE_CH02796
RDEN375451 RD1_2755RD1_2754RD1_1920RD1_1921
PSYR223283 PSPTO_4943PSPTO_4942PSPTO_4941PSPTO_4940PSPTO_4939
PSYR205918 PSYR_0571PSYR_0572PSYR_0573PSYR_0574PSYR_0575
PSTU379731 PST_3669PST_3668PST_3667PST_3666PST_3665
PSP56811 PSYCPRWF_0820PSYCPRWF_0821PSYCPRWF_1868PSYCPRWF_2364
PSP312153 PNUC_1760PNUC_1286PNUC_1285PNUC_1284PNUC_1283
PSP296591 BPRO_3212BPRO_2603BPRO_2602BPRO_2601BPRO_2600
PPUT76869 PPUTGB1_4947PPUTGB1_4946PPUTGB1_4945PPUTGB1_4944PPUTGB1_4943
PPUT351746 PPUT_4771PPUT_4770PPUT_4769PPUT_4768PPUT_4767
PPUT160488 PP_4895PP_4894PP_4893PP_4892PP_4891
PPRO298386 PBPRA3351PBPRA3350PBPRA3349PBPRA3348PBPRA3347
PNAP365044 PNAP_1155PNAP_1877PNAP_1878PNAP_1879PNAP_1880
PMUL272843 PM0905PM0906PM0907PM0117PM0118
PMOB403833 PMOB_1380PMOB_1381PMOB_1321PMOB_1320
PMEN399739 PMEN_0634PMEN_0635PMEN_0636PMEN_0637PMEN_0638
PLUM243265 PLU4582PLU4581PLU4580PLU4579PLU4578
PING357804 PING_3239PING_3238PING_3237PING_3236PING_3235
PHAL326442 PSHAA0270PSHAA0271PSHAA0272PSHAA0273PSHAA0274
PFLU220664 PFL_0565PFL_0566PFL_0567PFL_0568PFL_0569
PFLU216595 PFLU0519PFLU0520PFLU0521PFLU0522PFLU0523
PFLU205922 PFL_0522PFL_0523PFL_0524PFL_0525PFL_0526
PENT384676 PSEEN4944PSEEN4943PSEEN4942PSEEN4941PSEEN4940
PCRY335284 PCRYO_1494PCRYO_1493PCRYO_0396PCRYO_2451
PCAR338963 PCAR_1305PCAR_1306PCAR_2043PCAR_2262PCAR_2263
PATL342610 PATL_3977PATL_3978PATL_3979PATL_3980PATL_3981
PARC259536 PSYC_0920PSYC_0921PSYC_0355PSYC_2127
PAER208964 PA4945PA4944PA4943PA4942PA4941
PAER208963 PA14_65320PA14_65310PA14_65300PA14_65280PA14_65270
OCAR504832 OCAR_5283OCAR_6100OCAR_6101OCAR_5278OCAR_5279
OANT439375 OANT_1801OANT_2208OANT_2207OANT_1794OANT_1795
NWIN323098 NWI_2344NWI_1449NWI_1450NWI_2349NWI_2348
NSP35761 NOCA_3843NOCA_3837NOCA_2578NOCA_4867
NOCE323261 NOC_2591NOC_2590NOC_2589NOC_2588NOC_2587
NMUL323848 NMUL_A0092NMUL_A0447NMUL_A0446NMUL_A0445NMUL_A0444
NHAM323097 NHAM_2723NHAM_1841NHAM_1842NHAM_2728NHAM_2727
NEUT335283 NEUT_0386NEUT_0961NEUT_0962NEUT_0963NEUT_0964
NEUR228410 NE1976NE1287NE1286NE1285NE1284
NARO279238 SARO_1931SARO_1932SARO_3333SARO_3332
MXAN246197 MXAN_3731MXAN_1356MXAN_3171MXAN_3172
MSUC221988 MS1517MS1518MS1519MS1619MS1620
MSP409 M446_6189M446_5942M446_5943M446_1089M446_1088
MSP400668 MMWYL1_2633MMWYL1_2632MMWYL1_2631MMWYL1_2630MMWYL1_2629
MSP266779 MESO_1743MESO_1613MESO_1612MESO_1749MESO_1748
MPET420662 MPE_A2034MPE_A1991MPE_A1990MPE_A1989MPE_A1988
MMAR394221 MMAR10_2021MMAR10_1448MMAR10_1449MMAR10_2024MMAR10_2023
MMAG342108 AMB3506AMB2372AMB2373AMB3489AMB3490
MLOT266835 MLL1448MLR0402MLR0403MLL1455MLL1454
MFLA265072 MFLA_1385MFLA_1589MFLA_1588MFLA_1587MFLA_1586
MEXT419610 MEXT_2654MEXT_2824MEXT_2825MEXT_2658MEXT_2657
MCAP243233 MCA_1691MCA_1983MCA_1982MCA_1981MCA_1980
MAQU351348 MAQU_2770MAQU_2769MAQU_2768MAQU_2767MAQU_2766
LSPH444177 BSPH_1660BSPH_4371BSPH_4114BSPH_4113
LPNE400673 LPC_0439LPC_0010LPC_0011LPC_2860LPC_2859
LPNE297246 LPP2751LPP0009LPP0010LPP0548LPP0549
LPNE297245 LPL2624LPL0009LPL0010LPL0524LPL0525
LPNE272624 LPG2696LPG0009LPG0010LPG0484LPG0485
LCHO395495 LCHO_1285LCHO_2863LCHO_2862LCHO_2861LCHO_2860
KPNE272620 GKPORF_B3927GKPORF_B3928GKPORF_B3929GKPORF_B3930GKPORF_B3931
JSP375286 MMA_0461MMA_2122MMA_2121MMA_2120MMA_2119
JSP290400 JANN_2244JANN_2245JANN_3173JANN_3172
ILOI283942 IL0332IL0333IL0334IL0335IL0336
HSOM228400 HSM_1569HSM_1074HSM_1075HSM_1785HSM_1784
HSOM205914 HS_1084HS_1105HS_1104HS_0487HS_0488
HNEP81032 HNE_0452HNE_2006HNE_2005HNE_0469HNE_0470
HINF71421 HI_0068HI_0411HI_0151HI_0150
HINF374930 CGSHIEE_02955CGSHIEE_00940CGSHIEE_02530CGSHIEE_02535
HINF281310 NTHI0081NTHI0535NTHI0239NTHI0237
HHAL349124 HHAL_0667HHAL_0666HHAL_0665HHAL_0664HHAL_0663
HDUC233412 HD_0742HD_0741HD_0740HD_1809HD_1808
HCHE349521 HCH_05384HCH_05383HCH_05382HCH_05381HCH_05380
HARS204773 HEAR0405HEAR1269HEAR1271HEAR1272HEAR1273
FTUL458234 FTA_0948FTA_0949FTA_0950FTA_0954FTA_0955
FTUL418136 FTW_1100FTW_1099FTW_1098FTW_1096FTW_1095
FTUL401614 FTN_1052FTN_1051FTN_1050FTN_1048FTN_1047
FTUL393115 FTF0629FTF0630FTF0631FTF0633FTF0634
FTUL393011 FTH_0882FTH_0883FTH_0884FTH_0886FTH_0887
FTUL351581 FTL_0897FTL_0898FTL_0899FTL_0903FTL_0904
FRANT MIAAHFQHFLXHFLKHFLC
FPHI484022 FPHI_1537FPHI_1538FPHI_1539FPHI_1542FPHI_1543
FNOD381764 FNOD_0276FNOD_0121FNOD_0702FNOD_0703
ESP42895 ENT638_0354ENT638_0355ENT638_0356ENT638_0357ENT638_0358
ELIT314225 ELI_05520ELI_06260ELI_06255ELI_11330ELI_11335
EFER585054 EFER_4224EFER_4225EFER_4226EFER_4227EFER_4228
ECOO157 MIAAHFQHFLXHFLKHFLC
ECOL83334 ECS5147ECS5148ECS5149ECS5150ECS5151
ECOL585397 ECED1_4956ECED1_4957ECED1_4958ECED1_4959ECED1_4960
ECOL585057 ECIAI39_4636ECIAI39_4637ECIAI39_4638ECIAI39_4639ECIAI39_4640
ECOL585056 ECUMN_4704ECUMN_4705ECUMN_4706ECUMN_4707ECUMN_4708
ECOL585055 EC55989_4726EC55989_4727EC55989_4728EC55989_4729EC55989_4730
ECOL585035 ECS88_4757ECS88_4758ECS88_4759ECS88_4760ECS88_4761
ECOL585034 ECIAI1_4404ECIAI1_4405ECIAI1_4406ECIAI1_4407ECIAI1_4408
ECOL481805 ECOLC_3842ECOLC_3841ECOLC_3840ECOLC_3839ECOLC_3838
ECOL469008 ECBD_3863ECBD_3862ECBD_3861ECBD_3860ECBD_3859
ECOL439855 ECSMS35_4642ECSMS35_4643ECSMS35_4644ECSMS35_4645ECSMS35_4646
ECOL413997 ECB_04038ECB_04039ECB_04040ECB_04041ECB_04042
ECOL409438 ECSE_4468ECSE_4469ECSE_4470ECSE_4471ECSE_4472
ECOL405955 APECO1_2220APECO1_2219APECO1_2218APECO1_2217APECO1_2216
ECOL364106 UTI89_C4771UTI89_C4772UTI89_C4773UTI89_C4774UTI89_C4775
ECOL362663 ECP_4416ECP_4417ECP_4418ECP_4419ECP_4420
ECOL331111 ECE24377A_4729ECE24377A_4730ECE24377A_4731ECE24377A_4732ECE24377A_4733
ECOL316407 ECK4167:JW4129:B4171ECK4168:JW4130:B4172ECK4169:JW4131:B4173ECK4170:JW4132:B4174ECK4171:JW4133:B4175
ECOL199310 C5255C5256C5257C5258C5259
ECAR218491 ECA3935ECA3934ECA3933ECA3932ECA3931
DVUL882 DVU_1533DVU_3236DVU_0684DVU_0683
DSHI398580 DSHI_1567DSHI_1566DSHI_2736DSHI_2735
DPSY177439 DP1930DP2918DP1092DP1091
DNOD246195 DNO_1117DNO_0595DNO_0596DNO_0597DNO_0598
DDES207559 DDE_1784DDE_0376DDE_2946DDE_2947
DARO159087 DARO_3171DARO_2980DARO_2979DARO_2978DARO_2977
CVIO243365 CV_3389CV_3533CV_3532CV_3531CV_3530
CTET212717 CTC_01300CTC_02227CTC_00681CTC_00681
CSP78 CAUL_3349CAUL_2610CAUL_2611CAUL_3344CAUL_3345
CSP501479 CSE45_1387CSE45_1388CSE45_1025CSE45_1026
CSAL290398 CSAL_1276CSAL_1277CSAL_1278CSAL_1279CSAL_1280
CRUT413404 RMAG_0765RMAG_0207RMAG_0534RMAG_0533
CPSY167879 CPS_0324CPS_0325CPS_0326CPS_0327CPS_0328
CPHY357809 CPHY_2379CPHY_0534CPHY_3822CPHY_3821
CPER289380 CPR_1173CPR_1174CPR_1927CPR_1132
CPER195103 CPF_1360CPF_1361CPF_2215CPF_1316
CPER195102 CPE1157CPE1158CPE1959CPE1060
CNOV386415 NT01CX_2107NT01CX_2108NT01CX_0101NT01CX_0101
CKLU431943 CKL_1576CKL_1577CKL_0994CKL_0994
CJAP155077 CJA_3080CJA_3079CJA_3078CJA_3077CJA_3076
CDIF272563 CD1975CD1974CD0788CD0881
CBOT536232 CLM_1955CLM_1954CLM_0641CLM_0641
CBOT515621 CLJ_B1976CLJ_B1975CLJ_B0616CLJ_B0616
CBOT508765 CLL_A1817CLL_A1816CLL_A1004CLL_A1091
CBOT498213 CLD_2842CLD_2843CLD_1460CLD_0210CLD_0210
CBOT441772 CLI_1793CLI_1792CLI_0618CLI_0618
CBOT441771 CLC_1740CLC_1739CLC_0463CLC_0463
CBOT441770 CLB_1733CLB_1732CLB_0579CLB_0579
CBOT36826 CBO1798CBO1797CBO0539CBO0539
CBLO291272 BPEN_081BPEN_082BPEN_083BPEN_084BPEN_085
CBLO203907 BFL079BFL080BFL081BFL082
CBEI290402 CBEI_2564CBEI_2563CBEI_4227CBEI_1046
CACE272562 CAC1835CAC1834CAC2299CAC1052CAC1052
BWEI315730 BCERKBAB4_3479BCERKBAB4_3478BCERKBAB4_3472BCERKBAB4_1924BCERKBAB4_1924
BVIE269482 BCEP1808_0723BCEP1808_1734BCEP1808_1733BCEP1808_1732BCEP1808_1731
BTRI382640 BT_1323BT_1322BT_1566BT_1565
BTHU412694 BALH_3341BALH_3340BALH_3334BALH_1834BALH_1834
BTHU281309 BT9727_3459BT9727_3458BT9727_3452BT9727_1890BT9727_1890
BTHA271848 BTH_I1319BTH_I2239BTH_I2240BTH_I2241BTH_I2242
BSUI470137 BSUIS_A1441BSUIS_A1160BSUIS_A1159BSUIS_A1448BSUIS_A1447
BSUI204722 BR_1390BR_1111BR_1110BR_1397BR_1396
BSP376 BRADO5567BRADO3855BRADO3854BRADO5575BRADO5574
BSP36773 BCEP18194_A3852BCEP18194_A5108BCEP18194_A5107BCEP18194_A5106BCEP18194_A5105
BQUI283165 BQ05340BQ05350BQ08610BQ08600
BPSE320373 BURPS668_3265BURPS668_2184BURPS668_2183BURPS668_2182BURPS668_2181
BPSE320372 BURPS1710B_A3584BURPS1710B_A2551BURPS1710B_A2550BURPS1710B_A2549BURPS1710B_A2548
BPSE272560 BPSL2815BPSL1518BPSL1519BPSL1520BPSL1521
BPET94624 BPET0826BPET2025BPET2026BPET2027BPET2028
BPER257313 BP0243BP2193BP2192BP2191BP2190
BPAR257311 BPP3624BPP2849BPP2848BPP2847BPP2846
BOVI236 GBOORF1404GBOORF1112GBOORF1111GBOORF1410GBOORF1409
BMEL359391 BAB1_1409BAB1_1134BAB1_1133BAB1_1416BAB1_1415
BMEL224914 BMEI0616BMEI0872BMEI0873BMEI0610BMEI0611
BMAL320389 BMA10247_2193BMA10247_1101BMA10247_1100BMA10247_1099BMA10247_1098
BMAL320388 BMASAVP1_A0513BMASAVP1_A1829BMASAVP1_A1828BMASAVP1_A1827BMASAVP1_A1826
BMAL243160 BMA_2315BMA_1340BMA_1339BMA_1338BMA_1337
BJAP224911 BLL6504BSR4491BLR4492BLL6509BLL6508
BHEN283166 BH07490BH07500BH10960BH10950
BHAL272558 BH2366BH2365BH3155BH3154
BCIC186490 BCI_0583BCI_0581BCI_0580BCI_0579BCI_0578
BCER572264 BCA_3804BCA_3803BCA_3797BCA_2145BCA_2145
BCER405917 BCE_3741BCE_3740BCE_3734BCE_2146BCE_2146
BCER315749 BCER98_2391BCER98_2390BCER98_2384BCER98_1560BCER98_1560
BCER288681 BCE33L3473BCE33L3472BCE33L3465BCE33L1880BCE33L1880
BCER226900 BC_3714BC_3713BC_3708BC_2057BC_2057
BCEN331272 BCEN2424_0764BCEN2424_1807BCEN2424_1806BCEN2424_1805BCEN2424_1804
BCEN331271 BCEN_0280BCEN_6272BCEN_6274BCEN_6275
BCAN483179 BCAN_A1422BCAN_A1130BCAN_A1129BCAN_A1429BCAN_A1428
BBRO257310 BB4059BB3170BB3169BB3168BB3167
BBAC360095 BARBAKC583_0624BARBAKC583_0625BARBAKC583_0924BARBAKC583_0923
BANT592021 BAA_3866BAA_3865BAA_1898BAA_2141BAA_2141
BANT568206 BAMEG_0790BAMEG_0791BAMEG_2763BAMEG_2516BAMEG_2516
BANT261594 GBAA3843GBAA3842GBAA1828GBAA2075GBAA2075
BANT260799 BAS3560BAS3559BAS1693BAS1928BAS1928
BAMB398577 BAMMC406_0684BAMMC406_1718BAMMC406_1717BAMMC406_1716BAMMC406_1715
BAMB339670 BAMB_0659BAMB_1745BAMB_1744BAMB_1743BAMB_1742
BABO262698 BRUAB1_1386BRUAB1_1117BRUAB1_1116BRUAB1_1392BRUAB1_1391
ASP76114 EBA7097EBA1255EBA1254EBA1253EBA1252
ASP62977 ACIAD2374ACIAD2373ACIAD3005ACIAD2967
ASP62928 AZO3131AZO0932AZO0933AZO0934AZO0935
ASP232721 AJS_3111AJS_1175AJS_1176AJS_1177AJS_1178
ASAL382245 ASA_3370ASA_3369ASA_3368ASA_3367ASA_3366
APLE434271 APJL_2007APJL_2008APJL_2009APJL_1093APJL_1092
APLE416269 APL_1960APL_1961APL_1962APL_1077APL_1076
ANAE240017 ANA_0420ANA_0425ANA_0582ANA_1141
AMET293826 AMET_2542AMET_2541AMET_3104AMET_3103
AHYD196024 AHA_0923AHA_0924AHA_0925AHA_0926AHA_0927
AFER243159 AFE_1162AFE_1202AFE_1201AFE_1200AFE_1199
AEHR187272 MLG_0572MLG_0573MLG_0574MLG_0575MLG_0576
ADEH290397 ADEH_1512ADEH_0203ADEH_3522ADEH_3523
ACAU438753 AZC_2575AZC_3080AZC_3079AZC_2569AZC_2570
ABOR393595 ABO_2204ABO_2203ABO_2202ABO_2201ABO_2200
ABAU360910 BAV0724BAV2338BAV2337BAV2336BAV2335
AAVE397945 AAVE_1294AAVE_1429AAVE_1430AAVE_1431AAVE_1432


Organism features enriched in list (features available for 264 out of the 287 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.0004291117
Arrangment:Pairs 0.001688664112
Disease:Bubonic_plague 0.008355566
Disease:Dysentery 0.008355566
Endospores:No 7.236e-1650211
Endospores:Yes 0.00181363453
GC_Content_Range4:0-40 1.097e-1060213
GC_Content_Range4:60-100 2.063e-792145
GC_Content_Range7:30-40 3.080e-944166
GC_Content_Range7:50-60 0.000159565107
GC_Content_Range7:60-70 1.204e-889134
Genome_Size_Range5:0-2 3.150e-2221155
Genome_Size_Range5:2-4 1.489e-663197
Genome_Size_Range5:4-6 3.761e-32148184
Genome_Size_Range5:6-10 0.00058843247
Genome_Size_Range9:0-1 0.0000143227
Genome_Size_Range9:1-2 2.547e-1619128
Genome_Size_Range9:2-3 1.436e-926120
Genome_Size_Range9:4-5 1.177e-137696
Genome_Size_Range9:5-6 2.466e-147288
Genome_Size_Range9:6-8 0.00059132738
Gram_Stain:Gram_Neg 4.532e-25211333
Gram_Stain:Gram_Pos 2.677e-1134150
Habitat:Host-associated 0.000069672206
Habitat:Multiple 0.0000207103178
Habitat:Specialized 0.00371051553
Habitat:Terrestrial 0.00547932131
Motility:No 4.081e-1233151
Motility:Yes 2.865e-19174267
Optimal_temp.:- 0.0049631130257
Optimal_temp.:25-30 0.00005741719
Oxygen_Req:Anaerobic 0.001292333102
Oxygen_Req:Facultative 0.0014144107201
Pathogenic_in:Animal 0.00153274166
Shape:Coccus 9.588e-15782
Shape:Rod 1.433e-30223347
Shape:Sphere 0.0010755219
Shape:Spiral 0.0000932534
Temp._range:Hyperthermophilic 0.0034581423
Temp._range:Mesophilic 0.0096143224473
Temp._range:Psychrophilic 0.000742299
Temp._range:Thermophilic 0.0000103435



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 174
Effective number of orgs (counting one per cluster within 468 clusters): 140

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WSUC273121 ncbi Wolinella succinogenes DSM 17400
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TPEN368408 ncbi Thermofilum pendens Hrk 51
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 71
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSP84588 ncbi Synechococcus sp. WH 81021
SSP64471 ncbi Synechococcus sp. CC93111
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP1131 Synechococcus sp. CC96051
SSOL273057 ncbi Sulfolobus solfataricus P21
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SPNE488221 ncbi Streptococcus pneumoniae 705851
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-61
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-141
SPNE171101 ncbi Streptococcus pneumoniae R61
SPNE170187 ncbi Streptococcus pneumoniae G541
SPNE1313 Streptococcus pneumoniae1
SMUT210007 ncbi Streptococcus mutans UA1591
SGOR29390 Streptococcus gordonii Challis1
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99411
PTOR263820 ncbi Picrophilus torridus DSM 97900
PRUM264731 ncbi Prevotella ruminicola 231
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96010
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PAST100379 Onion yellows phytoplasma0
PAER178306 ncbi Pyrobaculum aerophilum IM20
NSP387092 ncbi Nitratiruptor sp. SB155-20
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTHE349307 ncbi Methanosaeta thermophila PT1
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP1
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S21
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MACE188937 ncbi Methanosarcina acetivorans C2A0
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
LACI272621 ncbi Lactobacillus acidophilus NCFM0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
HACI382638 ncbi Helicobacter acinonychis Sheeba0
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FMAG334413 ncbi Finegoldia magna ATCC 293281
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
EFAE226185 ncbi Enterococcus faecalis V5831
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCAV227941 ncbi Chlamydophila caviae GPIC1
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BLON206672 ncbi Bifidobacterium longum NCC27051
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APER272557 ncbi Aeropyrum pernix K11
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041
ABUT367737 ncbi Arcobacter butzleri RM40180


Names of the homologs of the genes in the group in each of these orgs
  EG10595   EG10438   EG10437   EG10436   EG10435   
WSUC273121
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852 TTHA0572
TTHE262724 TT_C0204
TPEN368408 TPEN_0832
TDEN326298
TACI273075
STOK273063 ST2208
STHE322159 STER_1195
STHE299768 STR1228
STHE264199 STU1228
SSUI391296 SSU98_1332
SSUI391295 SSU05_1315
SSP84588 SYNW0094OR2354
SSP64471 GSYN0100
SSP387093
SSP1131 SYNCC9605_0086
SSOL273057 SSO2195
SPYO370554 MGAS10750_SPY0817
SPYO370553 MGAS2096_SPY0795
SPYO370552 MGAS10270_SPY0782
SPYO370551 MGAS9429_SPY0780
SPYO319701 M28_SPY0703
SPYO293653 M5005_SPY0723
SPYO286636 M6_SPY0749
SPYO198466 SPYM3_0635
SPYO193567 SPS1217
SPYO186103 SPYM18_0979
SPYO160490 SPY0922
SPNE488221 SP70585_0731
SPNE487214 SPH_0767
SPNE487213 SPT_0696
SPNE171101 SPR0589
SPNE170187 SPN04034
SPNE1313 SPJ_0623
SMUT210007 SMU_1476C
SGOR29390 SGO_0993
SAGA211110 GBS1284
SAGA208435 SAG_1212
SAGA205921 SAK_1298
SACI330779
RXYL266117 RXYL_0702
PTOR263820
PRUM264731 GFRORF1225
PPEN278197 PEPE_1345
PMAR93060
PMAR74547 PMT0120
PMAR74546
PMAR59920 PMN2A_1214
PMAR167555 NATL1_20891
PMAR167546
PMAR167542
PMAR167540
PMAR167539 PRO_1797
PMAR146891
PISL384616
PINT246198
PGIN242619 PG_1886
PFUR186497 PF1534
PDIS435591 BDI_3288
PAST100379
PAER178306
NSP387092
NPHA348780 NP1126A
MVAN350058 MVAN_2436
MTHE349307 MTHE_1730
MSYN262723
MSTA339860
MSED399549
MPUL272635 MYPU_0680
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158 MMARC6_1623
MMAR426368 MMARC7_0290
MMAR402880 MMARC5_0557
MMAR368407 MEMAR_0502
MMAR267377 MMP1036
MLEP272631 ML0997
MLAB410358 MLAB_1703
MKAN190192 MK0847
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBAR269797
MART243272
MAEO419665 MAEO_0253
MACE188937
LXYL281090 LXX15960
LSAK314315
LREU557436 LREU_1203
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT267671 LIC_12245
LINT189518 LA1517
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967 LSEI_1070
LBOR355277 LBJ_1702
LBOR355276 LBL_1921
LBIF456481 LEPBI_I0479
LBIF355278 LBF_0461
LACI272621
IHOS453591
HSP64091 VNG0321G
HSAL478009 OE1490R
HPYL85963
HPYL357544
HPY
HMUK485914 HMUK_2990
HMAR272569 RRNAC1803
HHEP235279
HBUT415426 HBUT_1010
HACI382638
FSUC59374
FMAG334413 FMG_0745
FJOH376686 FJOH_1171
EFAE226185 EF_2162
DGEO319795 DGEO_0860
CTRA471473 CTLON_0631
CTRA471472 CTL0634
CSUL444179
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CMUR243161 TC_0658
CMIC443906 CMM_2019
CMIC31964 CMS1214
CMET456442
CMAQ397948
CKOR374847
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CHOM360107
CFET360106
CFEL264202
CCUR360105
CCON360104
CCAV227941 CCA_00265
CABO218497
BXEN266265
BTHE226186
BLON206672 BL1409
BFRA295405
BFRA272559
BAPH372461 BCC_371
AYEL322098
AURANTIMONAS
APER272557 APE2153
ALAI441768 ACL_0837
AFUL224325 AF_1420
ABUT367737


Organism features enriched in list (features available for 165 out of the 174 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 7.142e-64492
Arrangment:Pairs 0.001938920112
Disease:Leptospirosis 0.006249444
Disease:Pharyngitis 0.000036488
Disease:Wide_range_of_infections 7.299e-71111
Disease:bronchitis_and_pneumonitis 0.000036488
Endospores:No 2.259e-16103211
GC_Content_Range4:0-40 2.935e-1297213
GC_Content_Range4:40-60 0.002979750224
GC_Content_Range4:60-100 4.291e-817145
GC_Content_Range7:30-40 3.686e-1180166
GC_Content_Range7:50-60 2.427e-612107
GC_Content_Range7:60-70 1.730e-814134
Genome_Size_Range5:0-2 1.032e-2697155
Genome_Size_Range5:4-6 7.853e-219184
Genome_Size_Range5:6-10 0.0004846447
Genome_Size_Range9:0-1 0.00002061827
Genome_Size_Range9:1-2 8.172e-2079128
Genome_Size_Range9:4-5 5.474e-9696
Genome_Size_Range9:5-6 1.331e-10388
Genome_Size_Range9:6-8 0.0013055338
Gram_Stain:Gram_Neg 3.204e-865333
Habitat:Host-associated 0.006242970206
Habitat:Multiple 0.002110437178
Habitat:Specialized 0.00561222353
Habitat:Terrestrial 0.0003148131
Motility:No 1.310e-768151
Motility:Yes 2.151e-651267
Optimal_temp.:- 0.001030757257
Optimal_temp.:30-35 0.002439367
Optimal_temp.:37 0.000464744106
Oxygen_Req:Aerobic 0.000039233185
Oxygen_Req:Anaerobic 0.005177239102
Oxygen_Req:Microaerophilic 0.00255001118
Pathogenic_in:Animal 0.00412481066
Pathogenic_in:Swine 0.001737755
Salinity:Non-halophilic 0.000947043106
Shape:Coccus 1.058e-74482
Shape:Irregular_coccus 0.00025401217
Shape:Rod 5.046e-2148347
Shape:Sphere 3.813e-71619
Shape:Spiral 4.632e-62234
Temp._range:Hyperthermophilic 0.00829431223



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GLYCOCAT-PWY (glycogen degradation I)2462130.6566
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951790.6192
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3002290.5852
TYRFUMCAT-PWY (tyrosine degradation I)1841650.5664
PWY-5918 (heme biosynthesis I)2722120.5629
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491430.5613
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251870.5588
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2862160.5444
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2912180.5418
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181800.5373
PWY-4041 (γ-glutamyl cycle)2792110.5341
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2962190.5329
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2902150.5255
PWY-1269 (CMP-KDO biosynthesis I)3252310.5240
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3002190.5207
GLUTATHIONESYN-PWY (glutathione biosynthesis)3392360.5162
PWY-5028 (histidine degradation II)1301250.5160
PWY-5669 (phosphatidylethanolamine biosynthesis I)4162670.5152
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831560.5069
PWY-5148 (acyl-CoA hydrolysis)2271780.4913
NAGLIPASYN-PWY (lipid IVA biosynthesis)3482350.4843
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911570.4820
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3292260.4802
AST-PWY (arginine degradation II (AST pathway))1201140.4795
PWY-5913 (TCA cycle variation IV)3012130.4790
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222630.4725
PWY-5386 (methylglyoxal degradation I)3052130.4670
PWY0-862 (cis-dodecenoyl biosynthesis)3432300.4660
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551860.4488
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96940.4440
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911510.4401
P344-PWY (acrylonitrile degradation)2101610.4377
DAPLYSINESYN-PWY (lysine biosynthesis I)3422250.4365
GLUTAMINDEG-PWY (glutamine degradation I)1911500.4331
CENTFERM-PWY (acetyl-CoA fermentation to butyrate I)2081590.4314
CHOLINE-BETAINE-ANA-PWY (choline degradation I)1351170.4284
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3982470.4267
PLPSAL-PWY (pyridoxal 5'-phosphate salvage pathway)3742370.4254
VALDEG-PWY (valine degradation I)2901990.4222
PWY-46 (putrescine biosynthesis III)1381180.4221
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))1381180.4221
PWY-5084 (2-ketoglutarate dehydrogenase complex)3262150.4179
GALACTCAT-PWY (D-galactonate degradation)104960.4153
REDCITCYC (TCA cycle variation II)1741380.4152
SO4ASSIM-PWY (sulfate reduction I (assimilatory))3112070.4105
GALACTARDEG-PWY (D-galactarate degradation I)1511240.4091
PWY-5340 (sulfate activation for sulfonation)3852390.4085
PWY-5194 (siroheme biosynthesis)3122070.4075
PWY-561 (superpathway of glyoxylate cycle)1621300.4065
GLYSYN-THR-PWY (glycine biosynthesis IV)2151590.4061
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)1121000.4059
GLUCARDEG-PWY (D-glucarate degradation I)1521240.4047
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3652300.4044
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561260.4024



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG10438   EG10437   EG10436   EG10435   
EG105950.9998850.9997360.9995390.99952
EG104380.9999610.9997030.999675
EG104370.9997730.999716
EG104360.999994
EG10435



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PAIRWISE BLAST SCORES:

  EG10595   EG10438   EG10437   EG10436   EG10435   
EG105950.0f0----
EG10438-0.0f0---
EG10437--0.0f0--
EG10436---0.0f0-
EG10435----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- CPLX0-2982 (HflB, integral membrane ATP-dependent zinc metallopeptidase) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.400, average score: 0.943)
  Genes in pathway or complex:
             0.8192 0.7440 EG11506 (ftsH) EG11506-MONOMER (ATP-dependent zinc metalloprotease FtsH)
   *in cand* 0.9998 0.9995 EG10436 (hflK) EG10436-MONOMER (regulator of FtsH protease)
   *in cand* 0.9998 0.9995 EG10435 (hflC) EG10435-MONOMER (regulator of FtsH protease)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9998 0.9997 EG10437 (hflX) EG10437-MONOMER (GTPase associated with the 50S subunit of the ribosome)
   *in cand* 0.9998 0.9997 EG10438 (hfq) EG10438-MONOMER (RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins)
   *in cand* 0.9997 0.9995 EG10595 (miaA) EG10595-MONOMER (tRNA(i6A37) synthase)

- CPLX0-1321 (HflK-HflC complex; regulator of FtsH protease) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.400, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9998 0.9995 EG10435 (hflC) EG10435-MONOMER (regulator of FtsH protease)
   *in cand* 0.9998 0.9995 EG10436 (hflK) EG10436-MONOMER (regulator of FtsH protease)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9998 0.9997 EG10437 (hflX) EG10437-MONOMER (GTPase associated with the 50S subunit of the ribosome)
   *in cand* 0.9998 0.9997 EG10438 (hfq) EG10438-MONOMER (RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins)
   *in cand* 0.9997 0.9995 EG10595 (miaA) EG10595-MONOMER (tRNA(i6A37) synthase)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10435 EG10436 EG10437 EG10438 EG10595 (centered at EG10437)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG10595   EG10438   EG10437   EG10436   EG10435   
410/623332/623394/623345/623353/623
AAEO224324:0:Tyes6690---
AAUR290340:2:Tyes0-3576-
AAVE397945:0:Tyes0135136137138
ABAC204669:0:Tyes22410--
ABAU360910:0:Tyes01621162016191618
ABOR393595:0:Tyes43210
ACAU438753:0:Tyes651751601
ACEL351607:0:Tyes328-3260-
ACRY349163:8:Tyes-10--
ADEH290397:0:Tyes1317-033503351
AEHR187272:0:Tyes01234
AFER243159:0:Tyes039383736
AFUL224325:0:Tyes----0
AHYD196024:0:Tyes01234
ALAI441768:0:Tyes---0-
AMAR234826:0:Tyes---01
AMAR329726:9:Tyes1052-0--
AMET293826:0:Tyes10-553552
ANAE240017:0:Tyes0-5150663
AORE350688:0:Tyes10233--
APER272557:0:Tyes----0
APHA212042:0:Tyes---01
APLE416269:0:Tyes92392492510
APLE434271:0:Tno96296396410
ASAL382245:5:Tyes43210
ASP1667:3:Tyes0-3724-
ASP232721:2:Tyes18610123
ASP62928:0:Tyes22380123
ASP62977:0:Tyes10574540-
ASP76114:2:Tyes34083210
AVAR240292:3:Tyes683-0-3205
BABO262698:1:Tno26610272271
BAFZ390236:2:Fyes---01
BAMB339670:3:Tno01112111111101109
BAMB398577:3:Tno01046104510441043
BAMY326423:0:Tyes01---
BANT260799:0:Tno185418530232232
BANT261594:2:Tno183518340228228
BANT568206:2:Tyes01196417181718
BANT592021:2:Tno195819570241241
BAPH198804:0:Tyes---10
BAPH372461:0:Tyes0----
BBAC264462:0:Tyes0-249-1032
BBAC360095:0:Tyes-01278277
BBRO257310:0:Tyes9073210
BBUR224326:21:Fno---01
BCAN483179:1:Tno28110288287
BCEN331271:0:Tno-0-12
BCEN331271:2:Tno0----
BCEN331272:3:Tyes01041104010391038
BCER226900:1:Tyes16161615161100
BCER288681:0:Tno15821581157500
BCER315749:1:Tyes75775675000
BCER405917:1:Tyes14901489148300
BCER572264:1:Tno16471646164000
BCIC186490:0:Tyes53210
BCLA66692:0:Tyes10---
BGAR290434:2:Fyes---01
BHAL272558:0:Tyes10-804803
BHEN283166:0:Tyes-01323322
BHER314723:0:Fyes---01
BJAP224911:0:Fyes20300120352034
BLIC279010:0:Tyes0128--
BLON206672:0:Tyes0----
BMAL243160:1:Tno8723210
BMAL320388:1:Tno01289128812871286
BMAL320389:1:Tyes10683210
BMEL224914:1:Tno626726801
BMEL359391:1:Tno25510262261
BOVI236:1:Tyes24210248247
BPAR257311:0:Tno7443210
BPER257313:0:Tyes01738173717361735
BPET94624:0:Tyes01204120512061207
BPSE272560:1:Tyes13020123
BPSE320372:1:Tno9323210
BPSE320373:1:Tno10293210
BPUM315750:0:Tyes0110--
BQUI283165:0:Tyes-01296295
BSP107806:2:Tyes2--10
BSP36773:2:Tyes01278127712761275
BSP376:0:Tyes16311016391638
BSUB:0:Tyes0110--
BSUI204722:1:Tyes27210279278
BSUI470137:1:Tno27110278277
BTHA271848:1:Tno0896897898899
BTHU281309:1:Tno15581557155200
BTHU412694:1:Tno14281427142100
BTRI382640:1:Tyes-10219218
BTUR314724:0:Fyes---01
BVIE269482:7:Tyes01003100210011000
BWEI315730:4:Tyes14971496149000
CACE272562:1:Tyes773772122900
CAULO:0:Tyes35701--
CBEI290402:0:Tyes1491149031090-
CBLO203907:0:Tyes0-123
CBLO291272:0:Tno01234
CBOT36826:1:Tno12271226-00
CBOT441770:0:Tyes11351134-00
CBOT441771:0:Tno12541253-00
CBOT441772:1:Tno11541153-00
CBOT498213:1:Tno11611160253100
CBOT508765:1:Tyes806805086-
CBOT515621:2:Tyes13401339-00
CBOT536232:0:Tno12651264-00
CBUR227377:1:Tyes76-0--
CBUR360115:1:Tno0-84--
CBUR434922:2:Tno131-0--
CCAV227941:1:Tyes--0--
CCHL340177:0:Tyes222-0--
CDES477974:0:Tyes01532--
CDIF272563:1:Tyes12171216091-
CDIP257309:0:Tyes4-0--
CEFF196164:0:Fyes5-0--
CGLU196627:0:Tyes4-0--
CHUT269798:0:Tyes0-1049--
CHYD246194:0:Tyes10---
CJAP155077:0:Tyes43210
CJEI306537:0:Tyes3-0--
CKLU431943:1:Tyes582583-00
CMIC31964:2:Tyes--0--
CMIC443906:2:Tyes--0--
CMUR243161:1:Tyes--0--
CNOV386415:0:Tyes01-430430
CPEL335992:0:Tyes---10
CPER195102:1:Tyes9798905-0
CPER195103:0:Tno4445878-0
CPER289380:3:Tyes4142782-0
CPHY357809:0:Tyes1824-032573256
CPRO264201:0:Fyes0-530--
CPSY167879:0:Tyes01234
CRUT413404:0:Tyes514-0304303
CSAL290398:0:Tyes01234
CSP501479:8:Fyes-35835901
CSP78:2:Tyes75401749750
CTEP194439:0:Tyes0-401--
CTET212717:0:Tyes580-142300
CTRA471472:0:Tyes--0--
CTRA471473:0:Tno--0--
CVES412965:0:Tyes207--10
CVIO243365:0:Tyes0153152151150
DARO159087:0:Tyes1943210
DDES207559:0:Tyes1428-026082609
DETH243164:0:Tyes4-0--
DGEO319795:1:Tyes0----
DHAF138119:0:Tyes10---
DNOD246195:0:Tyes4980123
DOLE96561:0:Tyes1230--01
DPSY177439:2:Tyes869-187410
DRAD243230:3:Tyes0--445-
DRED349161:0:Tyes6236220--
DSHI398580:5:Tyes-1011861185
DSP216389:0:Tyes4-0--
DSP255470:0:Tno23-0--
DVUL882:1:Tyes847-254010
ECAN269484:0:Tyes---01
ECAR218491:0:Tyes43210
ECHA205920:0:Tyes---01
ECOL199310:0:Tno01234
ECOL316407:0:Tno01234
ECOL331111:6:Tno01234
ECOL362663:0:Tno01234
ECOL364106:1:Tno01234
ECOL405955:2:Tyes01234
ECOL409438:6:Tyes01234
ECOL413997:0:Tno01234
ECOL439855:4:Tno01234
ECOL469008:0:Tno43210
ECOL481805:0:Tno43210
ECOL585034:0:Tno01234
ECOL585035:0:Tno01234
ECOL585055:0:Tno01234
ECOL585056:2:Tno01234
ECOL585057:0:Tno01234
ECOL585397:0:Tno01234
ECOL83334:0:Tno01234
ECOLI:0:Tno01234
ECOO157:0:Tno01234
EFAE226185:3:Tyes0----
EFER585054:1:Tyes01234
ELIT314225:0:Tyes015014911741175
ERUM254945:0:Tyes---01
ERUM302409:0:Tno---01
ESP42895:1:Tyes01234
FALN326424:0:Tyes5-0--
FJOH376686:0:Tyes--0--
FMAG334413:1:Tyes0----
FNOD381764:0:Tyes1540-580581
FNUC190304:0:Tyes368--0-
FPHI484022:1:Tyes01256
FRANT:0:Tno01245
FSP106370:0:Tyes5-0--
FSP1855:0:Tyes0-3--
FTUL351581:0:Tno01267
FTUL393011:0:Tno01234
FTUL393115:0:Tyes01245
FTUL401614:0:Tyes54310
FTUL418136:0:Tno54310
FTUL458234:0:Tno01234
GBET391165:0:Tyes35901--
GFOR411154:0:Tyes0-2463--
GKAU235909:1:Tyes0112--
GMET269799:1:Tyes10498--
GOXY290633:5:Tyes6210---
GSUL243231:0:Tyes9859840--
GTHE420246:1:Tyes0112--
GURA351605:0:Tyes8618620--
GVIO251221:0:Tyes1088-1992-0
HARS204773:0:Tyes0815816817818
HAUR316274:2:Tyes1350-0--
HBUT415426:0:Tyes----0
HCHE349521:0:Tyes43210
HDUC233412:0:Tyes210931930
HHAL349124:0:Tyes43210
HINF281310:0:Tyes0418-154153
HINF374930:0:Tyes3420-273274
HINF71421:0:Tno0326-7877
HMAR272569:8:Tyes----0
HMOD498761:0:Tyes870--
HMUK485914:1:Tyes----0
HNEP81032:0:Tyes0152915281718
HSAL478009:4:Tyes----0
HSOM205914:1:Tyes59861961801
HSOM228400:0:Tno49501712711
HSP64091:2:Tno----0
HWAL362976:1:Tyes---00
ILOI283942:0:Tyes01234
JSP290400:1:Tyes-01946945
JSP375286:0:Tyes01691169016891688
KPNE272620:2:Tyes01234
KRAD266940:2:Fyes3-02977-
LBIF355278:2:Tyes-0---
LBIF456481:2:Tno-0---
LBOR355276:1:Tyes-0---
LBOR355277:1:Tno-0---
LBRE387344:2:Tyes894--0-
LCAS321967:1:Tyes---0-
LCHO395495:0:Tyes01603160216011600
LINN272626:1:Tno01---
LINT189518:1:Tyes-0---
LINT267671:1:Tno-0---
LINT363253:3:Tyes0--392393
LMON169963:0:Tno01---
LMON265669:0:Tyes01---
LPLA220668:0:Tyes1074--0-
LPNE272624:0:Tno268101474475
LPNE297245:1:Fno261001513514
LPNE297246:1:Fyes274101536537
LPNE400673:0:Tno4240127922791
LREU557436:0:Tyes0----
LSPH444177:1:Tyes0-259923232322
LWEL386043:0:Tyes01---
LXYL281090:0:Tyes--0--
MABS561007:1:Tyes2-0--
MAEO419665:0:Tyes----0
MAER449447:0:Tyes0-2129--
MAQU351348:2:Tyes43210
MAVI243243:0:Tyes2-0--
MBOV233413:0:Tno2-0--
MBOV410289:0:Tno2-0--
MCAP243233:0:Tyes0281280279278
MEXT419610:0:Tyes017017143
MFLA265072:0:Tyes0204203202201
MGIL350054:3:Tyes310-3080-
MKAN190192:0:Tyes----0
MLAB410358:0:Tyes----0
MLEP272631:0:Tyes--0--
MLOT266835:2:Tyes83901845844
MMAG342108:0:Tyes11340111171118
MMAR267377:0:Tyes----0
MMAR368407:0:Tyes----0
MMAR394221:0:Tyes57301576575
MMAR402880:1:Tyes----0
MMAR426368:0:Tyes----0
MMAR444158:0:Tyes----0
MPET420662:1:Tyes463210
MPUL272635:0:Tyes----0
MSME246196:0:Tyes0-2--
MSP164756:1:Tno0-2972-
MSP164757:0:Tno0-2991-
MSP189918:2:Tyes0-2985-
MSP266779:3:Tyes13010136135
MSP400668:0:Tyes43210
MSP409:2:Tyes49024666466710
MSUC221988:0:Tyes012105106
MTBCDC:0:Tno2-0--
MTBRV:0:Tno2-0--
MTHE187420:0:Tyes---00
MTHE264732:0:Tyes01---
MTHE349307:0:Tyes----0
MTUB336982:0:Tno2-0--
MTUB419947:0:Tyes2-0--
MVAN350058:0:Tyes--0--
MXAN246197:0:Tyes2282-017431744
NARO279238:0:Tyes-0114311430
NEUR228410:0:Tyes7063210
NEUT335283:2:Tyes0567568569570
NFAR247156:2:Tyes3-0--
NGON242231:0:Tyes5630339--
NHAM323097:2:Tyes86401869868
NMEN122586:0:Tno1820284--
NMEN122587:0:Tyes1640443--
NMEN272831:0:Tno1910407--
NMEN374833:0:Tno1630437--
NMUL323848:3:Tyes0354353352351
NOCE323261:1:Tyes43210
NPHA348780:2:Tyes----0
NSEN222891:0:Tyes---01
NSP103690:6:Tyes1422-0--
NSP35761:0:Tyes----0
NSP35761:1:Tyes1265-12590-
NWIN323098:0:Tyes90701912911
OANT439375:5:Tyes742342201
OCAR504832:0:Tyes582182201
OIHE221109:0:Tyes0114--
OTSU357244:0:Fyes---01
PABY272844:0:Tyes---00
PACN267747:0:Tyes0-2--
PAER208963:0:Tyes43210
PAER208964:0:Tno43210
PARC259536:0:Tyes56456501791-
PARS340102:0:Tyes---00
PATL342610:0:Tyes01234
PCAR338963:0:Tyes01752970971
PCRY335284:1:Tyes1094109302049-
PDIS435591:0:Tyes--0--
PENT384676:0:Tyes43210
PFLU205922:0:Tyes01234
PFLU216595:1:Tyes01234
PFLU220664:0:Tyes01234
PFUR186497:0:Tyes----0
PGIN242619:0:Tyes--0--
PHAL326442:1:Tyes01234
PHOR70601:0:Tyes---00
PING357804:0:Tyes43210
PLUM243265:0:Fyes43210
PLUT319225:0:Tyes0-172--
PMAR167539:0:Tyes0----
PMAR167555:0:Tyes0----
PMAR59920:0:Tno0----
PMAR74547:0:Tyes0----
PMEN399739:0:Tyes01234
PMOB403833:0:Tyes5960-10
PMUL272843:1:Tyes78878979001
PNAP365044:8:Tyes0726727728729
PPEN278197:0:Tyes---0-
PPRO298386:2:Tyes43210
PPUT160488:0:Tno43210
PPUT351746:0:Tyes43210
PPUT76869:0:Tno43210
PRUM264731:0:Tyes---0-
PSP117:0:Tyes0-3144--
PSP296591:2:Tyes6183210
PSP312153:0:Tyes4783210
PSP56811:2:Tyes0110571585-
PSTU379731:0:Tyes43210
PSYR205918:0:Tyes01234
PSYR223283:2:Tyes43210
PTHE370438:0:Tyes01785--
RAKA293614:0:Fyes---02
RALB246199:0:Tyes01---
RBEL336407:0:Tyes---10
RBEL391896:0:Fno---01
RCAN293613:0:Fyes---01
RCAS383372:0:Tyes1151-0--
RCON272944:0:Tno---01
RDEN375451:4:Tyes-77076901
RETL347834:5:Tyes82601830829
REUT264198:3:Tyes7133210
REUT381666:2:Tyes6943210
RFEL315456:2:Tyes---10
RFER338969:1:Tyes0767766765764
RLEG216596:6:Tyes95401959958
RMAS416276:1:Tyes---01
RMET266264:2:Tyes8053210
RPAL258594:0:Tyes057157214751474
RPAL316055:0:Tyes857757801
RPAL316056:0:Tyes67501681680
RPAL316057:0:Tyes050550612741273
RPAL316058:0:Tyes131884884701
RPOM246200:1:Tyes-73973801
RPRO272947:0:Tyes---01
RRIC392021:0:Fno---01
RRIC452659:0:Tyes---01
RRUB269796:1:Tyes01213121417321731
RSAL288705:0:Tyes--01288-
RSOL267608:1:Tyes13700123
RSP101510:3:Fyes0-3--
RSP357808:0:Tyes993-0--
RSPH272943:4:Tyes-10579578
RSPH349101:2:Tno-10557556
RSPH349102:5:Tyes-59960001
RTYP257363:0:Tno---01
RXYL266117:0:Tyes---0-
SACI56780:0:Tyes0-708--
SAGA205921:0:Tno--0--
SAGA208435:0:Tno--0--
SAGA211110:0:Tyes--0--
SALA317655:1:Tyes2020-998997
SARE391037:0:Tyes0-417591759
SAUR158878:1:Tno01---
SAUR158879:1:Tno01---
SAUR196620:0:Tno01---
SAUR273036:0:Tno01---
SAUR282458:0:Tno01---
SAUR282459:0:Tno01---
SAUR359786:1:Tno01---
SAUR359787:1:Tno01---
SAUR367830:3:Tno01---
SAUR418127:0:Tyes01---
SAUR426430:0:Tno01---
SAUR93061:0:Fno01---
SAUR93062:1:Tno01---
SAVE227882:1:Fyes5-04080-
SBAL399599:3:Tyes43210
SBAL402882:1:Tno43210
SBOY300268:1:Tyes43210
SCO:2:Fyes4041-404605466
SDEG203122:0:Tyes43210
SDEN318161:0:Tyes43210
SDYS300267:1:Tyes43210
SELO269084:0:Tyes0-43--
SENT209261:0:Tno01234
SENT220341:0:Tno01234
SENT295319:0:Tno01234
SENT321314:2:Tno01234
SENT454169:2:Tno01234
SEPI176279:1:Tyes01---
SEPI176280:0:Tno01---
SERY405948:0:Tyes0-2721721
SFLE198214:0:Tyes01234
SFLE373384:0:Tno01234
SFUM335543:0:Tyes1719-297001
SGLO343509:3:Tyes01234
SGOR29390:0:Tyes--0--
SHAE279808:0:Tyes10---
SHAL458817:0:Tyes43210
SHIGELLA:0:Tno01234
SLAC55218:1:Fyes-34234301
SLOI323850:0:Tyes01234
SMAR399550:0:Tyes---00
SMED366394:3:Tyes89801905904
SMEL266834:2:Tyes66701673672
SMUT210007:0:Tyes--0--
SONE211586:1:Tyes01234
SPEA398579:0:Tno43210
SPNE1313:0:Tyes--0--
SPNE170187:0:Tyes--0--
SPNE171101:0:Tno--0--
SPNE487213:0:Tno--0--
SPNE487214:0:Tno--0--
SPNE488221:0:Tno--0--
SPRO399741:1:Tyes01234
SPYO160490:0:Tno--0--
SPYO186103:0:Tno--0--
SPYO193567:0:Tno--0--
SPYO198466:0:Tno--0--
SPYO286636:0:Tno--0--
SPYO293653:0:Tno--0--
SPYO319701:0:Tyes--0--
SPYO370551:0:Tno--0--
SPYO370552:0:Tno--0--
SPYO370553:0:Tno--0--
SPYO370554:0:Tyes--0--
SRUB309807:1:Tyes0-892-216
SSAP342451:2:Tyes10---
SSED425104:0:Tyes01234
SSOL273057:0:Tyes----0
SSON300269:1:Tyes01234
SSP1131:0:Tyes0----
SSP1148:0:Tyes1475-1392-0
SSP292414:2:Tyes-10608607
SSP321327:0:Tyes0-1421-1370
SSP321332:0:Tyes1678-56-0
SSP644076:7:Fyes-50150201
SSP64471:0:Tyes0----
SSP84588:0:Tyes0----
SSP94122:1:Tyes01234
SSUI391295:0:Tyes--0--
SSUI391296:0:Tyes--0--
STHE264199:0:Tyes--0--
STHE292459:0:Tyes10385233232
STHE299768:0:Tno--0--
STHE322159:2:Tyes--0--
STOK273063:0:Tyes----0
STRO369723:0:Tyes0-415551555
STYP99287:1:Tyes01234
SWOL335541:0:Tyes01-867867
TCRU317025:0:Tyes01256
TDEN243275:0:Tyes0--12641265
TDEN292415:0:Tyes925946012
TELO197221:0:Tyes0---1557
TERY203124:0:Tyes0-223-199
TFUS269800:0:Tyes0-51425-
TKOD69014:0:Tyes---00
TLET416591:0:Tyes01-203204
TMAR243274:0:Tyes01212711272
TPAL243276:0:Tyes---01
TPEN368408:1:Tyes----0
TPET390874:0:Tno210728729
TPSE340099:0:Tyes1741750--
TROS309801:0:Tyes0----
TROS309801:1:Tyes--0--
TSP1755:0:Tyes1691700--
TSP28240:0:Tyes210607606
TTEN273068:0:Tyes930931711-0
TTHE262724:1:Tyes0----
TTHE300852:2:Tyes0----
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