CANDIDATE ID: 231

CANDIDATE ID: 231

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9963160e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    6.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages




GENE LIST:

- EG10560 (malP) (blu)
   Products of gene:
     - MALDEXPHOSPHORYL-MONOMER (maltodextrin phosphorylase monomer)
     - MALDEXPHOSPHORYL-CPLX (maltodextrin phosphorylase)
       Reactions:
        maltotetraose + phosphate  =  maltotriose + alpha-D-glucose 1-phosphate
         In pathways
         GLYCOCAT-PWY (glycogen degradation I)

- EG10380 (glgP) (b3428)
   Products of gene:
     - GLYCOPHOSPHORYL-MONOMER (GlgP)
     - GLYCOPHOSPHORYL-CPLX (glycogen phosphorylase)
       Reactions:
        a glycogen + phosphate  =  a limit dextrin + alpha-D-glucose 1-phosphate
         In pathways
         PWY-5767 (PWY-5767)
         GLYCOCAT-PWY (glycogen degradation I)
         PWY-5941 (PWY-5941)

- EG10379 (glgC) (b3430)
   Products of gene:
     - GLUC1PADENYLTRANS-MONOMER (GlgC)
     - GLUC1PADENYLTRANS-CPLX (glucose-1-phosphate adenylyltransferase)
       Reactions:
        alpha-D-glucose 1-phosphate + ATP  ->  ADP-D-glucose + diphosphate
         In pathways
         GLYCOGENSYNTH-PWY (glycogen biosynthesis I (from ADP-D-Glucose))
         PWY-622 (PWY-622)

- EG10378 (glgB) (b3432)
   Products of gene:
     - GLYCOGEN-BRANCH-MONOMER (1,4-α-glucan branching enzyme)
       Reactions:
        a 1,4-alpha-D-glucan  =  glycogen
         In pathways
         GLYCOGENSYNTH-PWY (glycogen biosynthesis I (from ADP-D-Glucose))

- EG10377 (glgA) (b3429)
   Products of gene:
     - GLYCOGENSYN-MONOMER (glycogen synthase)
       Reactions:
        (1,4-alpha-D-glucosyl)(n) + ADP-D-glucose  =  ADP + (1,4-alpha-D-glucosyl)(n+1)
         In pathways
         GLYCOGENSYNTH-PWY (glycogen biosynthesis I (from ADP-D-Glucose))
         PWY-622 (PWY-622)



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 268
Effective number of orgs (counting one per cluster within 468 clusters): 200

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
VVUL216895 ncbi Vibrio vulnificus CMCP65
VVUL196600 ncbi Vibrio vulnificus YJ0165
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106335
VFIS312309 ncbi Vibrio fischeri ES1145
VCHO345073 ncbi Vibrio cholerae O3955
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169615
TTUR377629 ncbi Teredinibacter turnerae T79015
TSP28240 Thermotoga sp.4
TPET390874 ncbi Thermotoga petrophila RKU-14
TKOD69014 ncbi Thermococcus kodakarensis KOD14
TERY203124 ncbi Trichodesmium erythraeum IMS1015
TELO197221 ncbi Thermosynechococcus elongatus BP-15
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252595
TDEN243275 ncbi Treponema denticola ATCC 354054
TCRU317025 ncbi Thiomicrospira crunogena XCL-25
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
SSUI391296 ncbi Streptococcus suis 98HAH335
SSUI391295 ncbi Streptococcus suis 05ZYH335
SSP94122 ncbi Shewanella sp. ANA-35
SSP84588 ncbi Synechococcus sp. WH 81025
SSP64471 ncbi Synechococcus sp. CC93115
SSP387093 ncbi Sulfurovum sp. NBC37-14
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)5
SSP321327 ncbi Synechococcus sp. JA-3-3Ab5
SSP1148 ncbi Synechocystis sp. PCC 68035
SSP1131 Synechococcus sp. CC96055
SSON300269 ncbi Shigella sonnei Ss0465
SPRO399741 ncbi Serratia proteamaculans 5685
SPNE488221 ncbi Streptococcus pneumoniae 705855
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-65
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-145
SPNE171101 ncbi Streptococcus pneumoniae R65
SPNE170187 ncbi Streptococcus pneumoniae G545
SPNE1313 Streptococcus pneumoniae5
SONE211586 ncbi Shewanella oneidensis MR-15
SMUT210007 ncbi Streptococcus mutans UA1595
SMEL266834 ncbi Sinorhizobium meliloti 10215
SMED366394 ncbi Sinorhizobium medicae WSM4195
SLOI323850 ncbi Shewanella loihica PV-45
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SGOR29390 Streptococcus gordonii Challis5
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB5
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SELO269084 ncbi Synechococcus elongatus PCC 63015
SDYS300267 ncbi Shigella dysenteriae Sd1975
SDEG203122 ncbi Saccharophagus degradans 2-405
SBOY300268 ncbi Shigella boydii Sb2275
SBAL402882 ncbi Shewanella baltica OS1855
SBAL399599 ncbi Shewanella baltica OS1955
SAGA211110 ncbi Streptococcus agalactiae NEM3165
SAGA208435 ncbi Streptococcus agalactiae 2603V/R5
SAGA205921 ncbi Streptococcus agalactiae A9095
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99414
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170255
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170295
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.15
RSP357808 ncbi Roseiflexus sp. RS-14
RSP101510 ncbi Rhodococcus jostii RHA14
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332094
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111705
RPAL316058 ncbi Rhodopseudomonas palustris HaA25
RPAL316057 ncbi Rhodopseudomonas palustris BisB55
RPAL316056 ncbi Rhodopseudomonas palustris BisB185
RPAL316055 ncbi Rhodopseudomonas palustris BisA535
RPAL258594 ncbi Rhodopseudomonas palustris CGA0095
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38415
RFER338969 ncbi Rhodoferax ferrireducens T1185
RETL347834 ncbi Rhizobium etli CFN 425
RDEN375451 ncbi Roseobacter denitrificans OCh 1145
RCAS383372 ncbi Roseiflexus castenholzii DSM 139414
RALB246199 Ruminococcus albus 85
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP117 Pirellula sp.5
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS95
PNAP365044 ncbi Polaromonas naphthalenivorans CJ25
PMUL272843 ncbi Pasteurella multocida multocida Pm705
PMOB403833 ncbi Petrotoga mobilis SJ954
PMEN399739 ncbi Pseudomonas mendocina ymp4
PMAR93060 ncbi Prochlorococcus marinus MIT 92155
PMAR74547 ncbi Prochlorococcus marinus MIT 93135
PMAR74546 ncbi Prochlorococcus marinus MIT 93125
PMAR59920 ncbi Prochlorococcus marinus NATL2A5
PMAR167555 ncbi Prochlorococcus marinus NATL1A5
PMAR167546 ncbi Prochlorococcus marinus MIT 93015
PMAR167542 ncbi Prochlorococcus marinus MIT 95155
PMAR167540 Prochlorococcus marinus pastoris MED4ax5
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13755
PMAR146891 ncbi Prochlorococcus marinus AS96015
PING357804 ncbi Psychromonas ingrahamii 375
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PATL342610 ncbi Pseudoalteromonas atlantica T6c5
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
PACN267747 ncbi Propionibacterium acnes KPA1712024
PABY272844 ncbi Pyrococcus abyssi GE54
OIHE221109 ncbi Oceanobacillus iheyensis HTE8315
NSP387092 ncbi Nitratiruptor sp. SB155-24
NSP35761 Nocardioides sp.4
NSP103690 ncbi Nostoc sp. PCC 71205
NOCE323261 ncbi Nitrosococcus oceani ATCC 197075
NMUL323848 ncbi Nitrosospira multiformis ATCC 251964
NFAR247156 ncbi Nocardia farcinica IFM 101524
NEUT335283 ncbi Nitrosomonas eutropha C914
NEUR228410 ncbi Nitrosomonas europaea ATCC 197184
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124445
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-15
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra4
MTBRV ncbi Mycobacterium tuberculosis H37Rv4
MTBCDC ncbi Mycobacterium tuberculosis CDC15514
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E5
MSP409 Methylobacterium sp.4
MMAG342108 ncbi Magnetospirillum magneticum AMB-15
MLOT266835 ncbi Mesorhizobium loti MAFF3030995
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK5
MFLA265072 ncbi Methylobacillus flagellatus KT5
MEXT419610 ncbi Methylobacterium extorquens PA14
MCAP243233 ncbi Methylococcus capsulatus Bath5
MBOV233413 ncbi Mycobacterium bovis AF2122/974
MAER449447 ncbi Microcystis aeruginosa NIES-8435
MABS561007 ncbi Mycobacterium abscessus ATCC 199774
LPLA220668 ncbi Lactobacillus plantarum WCFS15
LLAC272623 ncbi Lactococcus lactis lactis Il14034
LLAC272622 ncbi Lactococcus lactis cremoris SK115
LCHO395495 ncbi Leptothrix cholodnii SP-65
LCAS321967 ncbi Lactobacillus casei ATCC 3345
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)4
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)4
LACI272621 ncbi Lactobacillus acidophilus NCFM5
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
JSP290400 ncbi Jannaschia sp. CCS15
HSOM228400 ncbi Haemophilus somnus 23365
HSOM205914 ncbi Haemophilus somnus 129PT5
HINF71421 ncbi Haemophilus influenzae Rd KW205
HINF374930 ncbi Haemophilus influenzae PittEE4
HINF281310 ncbi Haemophilus influenzae 86-028NP5
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237794
GVIO251221 ncbi Gloeobacter violaceus PCC 74215
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-25
GSUL243231 ncbi Geobacter sulfurreducens PCA4
GMET269799 ncbi Geobacter metallireducens GS-154
GBET391165 ncbi Granulibacter bethesdensis CGDNIH15
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-005
FTUL418136 ncbi Francisella tularensis tularensis WY96-34185
FTUL401614 ncbi Francisella novicida U1125
FTUL393115 ncbi Francisella tularensis tularensis FSC1984
FTUL393011 ncbi Francisella tularensis holarctica OSU185
FTUL351581 Francisella tularensis holarctica FSC2005
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S855
FSP106370 ncbi Frankia sp. CcI34
FRANT ncbi Francisella tularensis tularensis SCHU S44
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250175
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255865
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B14
FMAG334413 ncbi Finegoldia magna ATCC 293285
FALN326424 ncbi Frankia alni ACN14a4
ESP42895 Enterobacter sp.5
EFER585054 ncbi Escherichia fergusonii ATCC 354695
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough4
DRED349161 ncbi Desulfotomaculum reducens MI-14
DOLE96561 ncbi Desulfococcus oleovorans Hxd34
DHAF138119 ncbi Desulfitobacterium hafniense Y515
DGEO319795 ncbi Deinococcus geothermalis DSM 113004
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G204
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis5
CTRA471472 ncbi Chlamydia trachomatis 434/Bu5
CSP501479 Citreicella sp. SE455
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE255
CPNE182082 ncbi Chlamydophila pneumoniae TW-1835
CPNE138677 ncbi Chlamydophila pneumoniae J1385
CPNE115713 ncbi Chlamydophila pneumoniae CWL0295
CPNE115711 ncbi Chlamydophila pneumoniae AR395
CPER289380 ncbi Clostridium perfringens SM1015
CPER195102 ncbi Clostridium perfringens 135
CNOV386415 ncbi Clostridium novyi NT4
CMUR243161 ncbi Chlamydia muridarum Nigg5
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3825
CMIC31964 ncbi Clavibacter michiganensis sepedonicus5
CKLU431943 ncbi Clostridium kluyveri DSM 5555
CJEI306537 ncbi Corynebacterium jeikeium K4114
CJAP155077 Cellvibrio japonicus4
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130324
CFEL264202 ncbi Chlamydophila felis Fe/C-565
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131294
CDIF272563 ncbi Clostridium difficile 6305
CCAV227941 ncbi Chlamydophila caviae GPIC5
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B5
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80525
CACE272562 ncbi Clostridium acetobutylicum ATCC 8244
CABO218497 ncbi Chlamydophila abortus S26/35
BXEN266265 ncbi Burkholderia xenovorans LB4004
BWEI315730 ncbi Bacillus weihenstephanensis KBAB45
BTHU412694 ncbi Bacillus thuringiensis Al Hakam5
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-275
BSUB ncbi Bacillus subtilis subtilis 1685
BSP376 Bradyrhizobium sp.5
BLON206672 ncbi Bifidobacterium longum NCC27054
BLIC279010 ncbi Bacillus licheniformis ATCC 145805
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1105
BHAL272558 ncbi Bacillus halodurans C-1254
BCER572264 ncbi Bacillus cereus 03BB1025
BCER405917 Bacillus cereus W5
BCER315749 ncbi Bacillus cytotoxicus NVH 391-985
BCER288681 ncbi Bacillus cereus E33L5
BCER226900 ncbi Bacillus cereus ATCC 145795
BANT592021 ncbi Bacillus anthracis A02485
BANT568206 ncbi Bacillus anthracis CDC 6845
BANT261594 ncbi Bacillus anthracis Ames Ancestor5
BANT260799 ncbi Bacillus anthracis Sterne5
AVAR240292 ncbi Anabaena variabilis ATCC 294135
ASP1667 Arthrobacter sp.4
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4495
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL035
APLE416269 ncbi Actinobacillus pleuropneumoniae L205
ANAE240017 Actinomyces oris MG14
AMET293826 ncbi Alkaliphilus metalliredigens QYMF5
AMAR329726 ncbi Acaryochloris marina MBIC110175
ALAI441768 ncbi Acholeplasma laidlawii PG-8A5
AHYD196024 Aeromonas hydrophila dhakensis5
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232705
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C5
ACRY349163 ncbi Acidiphilium cryptum JF-55
ACEL351607 ncbi Acidothermus cellulolyticus 11B4
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3455
AAUR290340 ncbi Arthrobacter aurescens TC14
AAEO224324 ncbi Aquifex aeolicus VF54


Names of the homologs of the genes in the group in each of these orgs
  EG10560   EG10380   EG10379   EG10378   EG10377   
YPSE349747 YPSIP31758_4002YPSIP31758_4002YPSIP31758_4004YPSIP31758_4006YPSIP31758_4003
YPSE273123 YPTB3783YPTB3783YPTB3785YPTB3787YPTB3784
YPES386656 YPDSF_3303YPDSF_3303YPDSF_3305YPDSF_3307YPDSF_3304
YPES377628 YPN_3940YPN_3940YPN_3588YPN_3590YPN_3587
YPES360102 YPA_3767YPA_3767YPA_3769YPA_3771YPA_3768
YPES349746 YPANGOLA_A4122YPANGOLA_A4122YPANGOLA_A4120YPANGOLA_A4118YPANGOLA_A4121
YPES214092 YPO3938YPO3938YPO3940YPO3942YPO3939
YPES187410 Y3890Y3890Y3888Y3886Y3889
YENT393305 YE4009YE4009YE4011YE4013YE4010
VVUL216895 VV2_1250VV2_1250VV2_0214VV2_1252VV1_2132
VVUL196600 VVA0077VVA0077VVA0721VVA0079VV2312
VPAR223926 VPA1620VPA1620VPA0833VPA1618VP1024
VFIS312309 VFA0810VFA0810VFA0806VFA0808VFA0805
VCHO345073 VC0395_0119VC0395_0119VC0395_0637VC0395_0117VC0395_A1329
VCHO VCA0013VCA0013VCA0699VCA0016VC1726
TTUR377629 TERTU_0938TERTU_0938TERTU_0939TERTU_0936TERTU_0940
TSP28240 TRQ2_1647TRQ2_1647TRQ2_0708TRQ2_0032
TPET390874 TPET_1581TPET_1581TPET_0684TPET_0032
TKOD69014 TK1406TK1406TK0219TK1768
TERY203124 TERY_3694TERY_3694TERY_4395TERY_1837TERY_2147
TELO197221 TLL2079TLL2079TLR1287TLL0578TLL0763
TDEN292415 TBD_2056TBD_2056TBD_2061TBD_2058TBD_2057
TDEN243275 TDE_2411TDE_2411TDE_2035TDE_1582
TCRU317025 TCR_0513TCR_0513TCR_0508TCR_0511TCR_0512
STYP99287 STM3534STM3534STM3536STM3538STM3535
SSUI391296 SSU98_1452SSU98_1452SSU98_1025SSU98_1029SSU98_1028
SSUI391295 SSU05_0394SSU05_0394SSU05_1013SSU05_1016SSU05_1015
SSP94122 SHEWANA3_2932SHEWANA3_2932SHEWANA3_2931SHEWANA3_2934SHEWANA3_2930
SSP84588 SYNW0156OR2324SYNW0156OR2324SYNW1118OR0127SYNW1494OR0430SYNW1000OR0032
SSP64471 GSYN0221GSYN0221GSYN1804GSYN2011GSYN1639
SSP387093 SUN_1278SUN_1278SUN_1268SUN_1269
SSP321332 CYB_2688CYB_2688CYB_1067CYB_1978CYB_1734
SSP321327 CYA_2127CYA_2127CYA_1562CYA_2062CYA_2648
SSP1148 SLR1367SLR1367SLR1176SLL0158SLL0945
SSP1131 SYNCC9605_0152SYNCC9605_0152SYNCC9605_1255SYNCC9605_1018SYNCC9605_1126
SSON300269 SSO_3668SSO_3668SSO_3670SSO_3672SSO_3669
SPRO399741 SPRO_4643SPRO_4643SPRO_4645SPRO_4647SPRO_4644
SPNE488221 SP70585_2211SP70585_2211SP70585_1192SP70585_1191SP70585_1194
SPNE487214 SPH_2295SPH_2295SPH_1215SPH_1214SPH_1217
SPNE487213 SPT_2114SPT_2114SPT_1167SPT_1166SPT_1169
SPNE171101 SPR1916SPR1916SPR1030SPR1029SPR1032
SPNE170187 SPN09150SPN09150SPN03163SPN03164SPN03161
SPNE1313 SPJ_2127SPJ_2127SPJ_1059SPJ_1058SPJ_1061
SONE211586 SO_1496SO_1496SO_1498SO_1494SO_1499
SMUT210007 SMU_1535SMU_1535SMU_1538SMU_1539SMU_1536
SMEL266834 SMC04460SMC04460SMC03923SMC03922SMC03924
SMED366394 SMED_2739SMED_2739SMED_2741SMED_2740SMED_2742
SLOI323850 SHEW_1170SHEW_1170SHEW_1171SHEW_1168SHEW_1172
SHIGELLA MALPMALPGLGCGLGBGLGA
SGOR29390 SGO_1550SGO_1550SGO_1553SGO_1554SGO_1551
SFUM335543 SFUM_2957SFUM_2957SFUM_3485SFUM_3451SFUM_2113
SFLE373384 SFV_3437SFV_3437SFV_3439SFV_3441SFV_3438
SFLE198214 AAN44911.1AAN44911.1AAN44913.1AAN44915.1AAN44912.1
SENT454169 SEHA_C3843SEHA_C3843SEHA_C3845SEHA_C3847SEHA_C3844
SENT321314 SCH_3464SCH_3464SCH_3466SCH_3468SCH_3465
SENT295319 SPA3385SPA3385SPA3387SPA3389SPA3386
SENT220341 STY4282STY4282STY4274STY4272STY4275
SENT209261 T3992T3992T3984T3982T3985
SELO269084 SYC1269_DSYC1269_DSYC0921_DSYC0464_CSYC1589_D
SDYS300267 SDY_3659SDY_3659SDY_3576SDY_3578SDY_3575
SDEG203122 SDE_0989SDE_0989SDE_0990SDE_0987SDE_0991
SBOY300268 SBO_3426SBO_3426SBO_3428SBO_3430SBO_3427
SBAL402882 SHEW185_1323SHEW185_1323SHEW185_1324SHEW185_1321SHEW185_1325
SBAL399599 SBAL195_1359SBAL195_1359SBAL195_1360SBAL195_1357SBAL195_1361
SAGA211110 GBS1507GBS1507GBS0872GBS0871GBS0874
SAGA208435 SAG_1438SAG_1438SAG_0854SAG_0853SAG_0856
SAGA205921 SAK_1472SAK_1472SAK_0977SAK_0976SAK_0979
RXYL266117 RXYL_0301RXYL_0301RXYL_2808RXYL_0316
RSPH349102 RSPH17025_1132RSPH17025_1132RSPH17025_1134RSPH17025_1783RSPH17025_1135
RSPH349101 RSPH17029_1533RSPH17029_1533RSPH17029_1532RSPH17029_1111RSPH17029_1531
RSPH272943 RSP_2887RSP_2887RSP_2886RSP_2448RSP_2885
RSP357808 ROSERS_4181ROSERS_4181ROSERS_3699ROSERS_1081
RSP101510 RHA1_RO01447RHA1_RO05975RHA1_RO01449RHA1_RO06459
RSAL288705 RSAL33209_0420RSAL33209_0420RSAL33209_2080RSAL33209_0428
RRUB269796 RRU_A2244RRU_A2244RRU_A2246RRU_A2576RRU_A2245
RPAL316058 RPB_0844RPB_0844RPB_0442RPB_1882RPB_0441
RPAL316057 RPD_0952RPD_0952RPD_0345RPD_3484RPD_0344
RPAL316056 RPC_4861RPC_4861RPC_0611RPC_3680RPC_0612
RPAL316055 RPE_4826RPE_4826RPE_0801RPE_3718RPE_0800
RPAL258594 RPA4727RPA4727RPA0381RPA3644RPA0382
RLEG216596 RL4114RL4114RL4116RL4115RL4117
RFER338969 RFER_0511RFER_0511RFER_0513RFER_2162RFER_0512
RETL347834 RHE_CH03593RHE_CH03593RHE_CH03595RHE_PF00275RHE_CH03596
RDEN375451 RD1_2876RD1_2876RD1_2874RD1_2875RD1_2873
RCAS383372 RCAS_0897RCAS_0897RCAS_0946RCAS_2787
RALB246199 GRAORF_0374GRAORF_3980GRAORF_2261GRAORF_2260GRAORF_2264
PSYR223283 PSPTO_5165PSPTO_5165PSPTO_2762PSPTO_3125
PSYR205918 PSYR_0374PSYR_0374PSYR_2491PSYR_2992
PSTU379731 PST_0323PST_0323PST_2152PST_2137
PSP117 RB8383RB8383RB1358RB2638RB6654
PPUT76869 PPUTGB1_5091PPUTGB1_5091PPUTGB1_3657PPUTGB1_3649
PPUT351746 PPUT_4915PPUT_4915PPUT_1785PPUT_1793
PPUT160488 PP_5041PP_5041PP_4058PP_4050
PPRO298386 PBPRB1330PBPRB1330PBPRB0405PBPRB1328PBPRB0406
PNAP365044 PNAP_1105PNAP_1105PNAP_1106PNAP_1104PNAP_1107
PMUL272843 PM0545PM0545PM0543PM0541PM0544
PMOB403833 PMOB_1871PMOB_0909PMOB_1316PMOB_1105
PMEN399739 PMEN_2288PMEN_2288PMEN_2293PMEN_2277
PMAR93060 P9215_18741P9215_18741P9215_08631P9215_06661P9215_06911
PMAR74547 PMT1946PMT1946PMT0566PMT0444PMT0403
PMAR74546 PMT9312_1693PMT9312_1693PMT9312_0777PMT9312_0584PMT9312_0609
PMAR59920 PMN2A_1176PMN2A_1176PMN2A_0175PMN2A_0020PMN2A_0045
PMAR167555 NATL1_20511NATL1_20511NATL1_08071NATL1_06401NATL1_06651
PMAR167546 P9301ORF_1830P9301ORF_1830P9301ORF_0845P9301ORF_0625P9301ORF_0650
PMAR167542 P9515ORF_1866P9515ORF_1866P9515ORF_0855P9515ORF_0685P9515ORF_0710
PMAR167540 PMM1601PMM1601PMM0769PMM0584PMM0609
PMAR167539 PRO_1759PRO_1759PRO_0842PRO_1078PRO_1052
PMAR146891 A9601_18101A9601_18101A9601_08311A9601_06401A9601_06651
PING357804 PING_0880PING_0880PING_0299PING_2364PING_2348
PFLU220664 PFL_0390PFL_0390PFL_2874PFL_2887
PFLU216595 PFLU0352PFLU0352PFLU2763PFLU3364
PFLU205922 PFL_0349PFL_0349PFL_2536PFL_2549
PENT384676 PSEEN5107PSEEN5107PSEEN2046PSEEN2054
PATL342610 PATL_2197PATL_2197PATL_2932PATL_1636PATL_0080
PAER208964 PA2144PA2144PA2153PA2165
PAER208963 PA14_36840PA14_36840PA14_36710PA14_36570
PACN267747 PPA0081PPA0081PPA0640PPA1111
PABY272844 PAB2414PAB2414PAB0317PAB2292
OIHE221109 OB0410OB0410OB0407OB0406OB0409
NSP387092 NIS_0947NIS_0947NIS_0936NIS_0937
NSP35761 NOCA_1811NOCA_1811NOCA_3717NOCA_1806
NSP103690 ALL1272ALL1272ALL4645ALL0713ALR1879
NOCE323261 NOC_2115NOC_2115NOC_0905NOC_0904NOC_0771
NMUL323848 NMUL_A0715NMUL_A0718NMUL_A0717NMUL_A0716
NFAR247156 NFA10800NFA47260NFA10780NFA42820
NEUT335283 NEUT_2054NEUT_1292NEUT_1291NEUT_0608
NEUR228410 NE0466NE2030NE2029NE2264
NARO279238 SARO_1659SARO_1659SARO_1657SARO_1658SARO_1656
MVAN350058 MVAN_1192MVAN_1192MVAN_4503MVAN_4302MVAN_2096
MTUB419947 MRA_1336MRA_1222MRA_1334MRA_3063
MTBRV RV1328RV1213RV1326CRV3032
MTBCDC MT1370MT1251MT1368MT3116
MSUC221988 MS2073MS2073MS1121MS1123MS1120
MSP409 M446_3076M446_3076M446_6806M446_3078
MMAG342108 AMB3062AMB3062AMB2110AMB3065AMB2111
MLOT266835 MLR7586MLR7586MLR7588MLR7587MLR7589
MGIL350054 MFLV_5144MFLV_5144MFLV_2193MFLV_2343MFLV_4262
MFLA265072 MFLA_1023MFLA_1023MFLA_1368MFLA_1367MFLA_1472
MEXT419610 MEXT_2028MEXT_2028MEXT_2714MEXT_2025
MCAP243233 MCA_2540MCA_2540MCA_1474MCA_1475MCA_1476
MBOV233413 MB1363MB1245MB1361CMB3058
MAER449447 MAE_20180MAE_20180MAE_28050MAE_54030MAE_06260
MABS561007 MAB_1854CMAB_1854CMAB_1352MAB_1467C
LPLA220668 LP_0024LP_0024LP_0021LP_0020LP_0023
LLAC272623 L99884L99884L95975L98347
LLAC272622 LACR_0727LACR_0727LACR_0724LACR_0145LACR_0726
LCHO395495 LCHO_1891LCHO_1891LCHO_1889LCHO_3321LCHO_1890
LCAS321967 LSEI_2036LSEI_2036LSEI_2039LSEI_2040LSEI_2037
LBIF456481 LEPBI_I0929LEPBI_I0929LEPBI_I1922LEPBI_I2990
LBIF355278 LBF_0896LBF_0896LBF_1867LBF_2887
LACI272621 LBA0685LBA0685LBA0681LBA0680LBA0683
KPNE272620 GKPORF_B3137GKPORF_B3137GKPORF_B3139GKPORF_B3141GKPORF_B3138
JSP290400 JANN_3118JANN_3118JANN_3114JANN_3113JANN_3115
HSOM228400 HSM_1364HSM_1364HSM_1366HSM_1368HSM_1365
HSOM205914 HS_0885HS_0885HS_0887HS_0889HS_0886
HINF71421 HI_1361HI_1361HI_1359HI_1357HI_1360
HINF374930 CGSHIEE_04335CGSHIEE_04335CGSHIEE_04325CGSHIEE_04330
HINF281310 NTHI1803NTHI1803NTHI1807NTHI1809NTHI1806
HAUR316274 HAUR_1148HAUR_4717HAUR_1279HAUR_4501
GVIO251221 GLR0998GLR0998GLL4260GLR1306GLR0932
GTHE420246 GTNG_2778GTNG_2778GTNG_2781GTNG_2782GTNG_2779
GSUL243231 GSU_2066GSU_2066GSU_2358GSU_1023
GMET269799 GMET_2767GMET_2767GMET_2768GMET_3175
GBET391165 GBCGDNIH1_2414GBCGDNIH1_2414GBCGDNIH1_2340GBCGDNIH1_0750GBCGDNIH1_2341
FTUL458234 FTA_0513FTA_0513FTA_0511FTA_0509FTA_0512
FTUL418136 FTW_1656FTW_1656FTW_1658FTW_1660FTW_1657
FTUL401614 FTN_0517FTN_0517FTN_0515FTN_0513FTN_0516
FTUL393115 FTF0417FTF0417FTF0413CFTF0416
FTUL393011 FTH_0485FTH_0485FTH_0483FTH_0481FTH_0484
FTUL351581 FTL_0487FTL_0487FTL_0485FTL_0483FTL_0486
FSUC59374 FSU2626FSU2626FSU0133FSU0369FSU2595
FSP106370 FRANCCI3_3664FRANCCI3_3664FRANCCI3_1667FRANCCI3_3681
FRANT MALPMALPGLGBGLGA
FPHI484022 FPHI_0323FPHI_0323FPHI_0326FPHI_0328FPHI_0325
FNUC190304 FN0857FN0857FN0855FN0856FN0853
FNOD381764 FNOD_1446FNOD_1446FNOD_1505FNOD_0306
FMAG334413 FMG_0264FMG_0264FMG_1038FMG_1039FMG_1036
FALN326424 FRAAL5884FRAAL5884FRAAL4553FRAAL5902
ESP42895 ENT638_3836ENT638_3836ENT638_3838ENT638_3840ENT638_3837
EFER585054 EFER_3405EFER_3405EFER_3407EFER_3409EFER_3406
ECOO157 GLGPGLGPGLGCGLGBGLGA
ECOL83334 ECS4273ECS4273ECS4275ECS4277ECS4274
ECOL585397 ECED1_4103ECED1_4103ECED1_4105ECED1_4107ECED1_4104
ECOL585057 ECIAI39_3909ECIAI39_3909ECIAI39_3911ECIAI39_3913ECIAI39_3910
ECOL585056 ECUMN_3892ECUMN_3892ECUMN_3894ECUMN_3896ECUMN_3893
ECOL585055 EC55989_3838EC55989_3838EC55989_3840EC55989_3842EC55989_3839
ECOL585035 ECS88_3826ECS88_3826ECS88_3828ECS88_3830ECS88_3827
ECOL585034 ECIAI1_3574ECIAI1_3574ECIAI1_3576ECIAI1_3578ECIAI1_3575
ECOL481805 ECOLC_0296ECOLC_0296ECOLC_0282ECOLC_0280ECOLC_0283
ECOL469008 ECBD_0328ECBD_0328ECBD_0312ECBD_0310ECBD_0313
ECOL439855 ECSMS35_3710ECSMS35_3710ECSMS35_3712ECSMS35_3714ECSMS35_3711
ECOL413997 ECB_03280ECB_03280ECB_03282ECB_03284ECB_03281
ECOL409438 ECSE_3697ECSE_3697ECSE_3699ECSE_3701ECSE_3698
ECOL405955 APECO1_3029APECO1_3029APECO1_3027APECO1_3025APECO1_3028
ECOL364106 UTI89_C3937UTI89_C3937UTI89_C3939UTI89_C3941UTI89_C3938
ECOL362663 ECP_3522ECP_3522ECP_3524ECP_3526ECP_3523
ECOL331111 ECE24377A_3907ECE24377A_3907ECE24377A_3909ECE24377A_3911ECE24377A_3908
ECOL316407 ECK3404:JW5689:B3417ECK3404:JW5689:B3417ECK3416:JW3393:B3430ECK3418:JW3395:B3432ECK3415:JW3392:B3429
ECOL199310 C4215C4215C4217C4219C4216
ECAR218491 ECA4147ECA4147ECA4149ECA4151ECA4148
DVUL882 DVU_2349DVU_2349DVU_2243DVU_2244
DRED349161 DRED_0443DRED_1455DRED_1453DRED_1457
DOLE96561 DOLE_1322DOLE_1322DOLE_0847DOLE_0848
DHAF138119 DSY2039DSY2039DSY2038DSY2040DSY2036
DGEO319795 DGEO_1198DGEO_0861DGEO_0981DGEO_1988
DDES207559 DDE_3088DDE_3088DDE_2285DDE_2286
CTRA471473 CTLON_0496CTLON_0496CTLON_0745CTLON_0241CTLON_0168
CTRA471472 CTL0500CTL0500CTL0750CTL0245CTL0167
CSP501479 CSE45_2013CSE45_2013CSE45_2015CSE45_2014CSE45_2016
CPRO264201 PC0106PC0106PC0109PC1761PC1596
CPNE182082 CPB0316CPB0316CPB0631CPB0494CPB0983
CPNE138677 CPJ0307CPJ0307CPJ0607CPJ0475CPJ0948
CPNE115713 CPN0307CPN0307CPN0607CPN0475CPN0948
CPNE115711 CP_0451CP_0451CP_0140CP_0279CP_0911
CPER289380 CPR_2332CPR_2332CPR_0086CPR_1559CPR_0082
CPER195102 CPE2337CPE2337CPE0068CPE1588CPE0064
CNOV386415 NT01CX_1243NT01CX_1243NT01CX_0723NT01CX_1242
CMUR243161 TC_0519TC_0519TC_0776TC_0257TC_0181
CMIC443906 CMM_1399CMM_1399CMM_1719CMM_1397CMM_2955
CMIC31964 CMS1044CMS1044CMS1963CMS0785CMS3091
CKLU431943 CKL_3496CKL_3496CKL_3494CKL_3498CKL_3497
CJEI306537 JK1268JK1268JK1383JK1330
CJAP155077 CJA_1605CJA_1884CJA_1885CJA_1886
CGLU196627 CG1479CG1479CG1269CG1381
CFEL264202 CF0532CF0532CF0873CF0740CF0193
CDIP257309 DIP1552DIP1552DIP0992DIP1065
CDIF272563 CD0885CD0885CD0882CD2526CD0884
CCAV227941 CCA_00475CCA_00475CCA_00133CCA_00268CCA_00821
CBOT508765 CLL_A3415CLL_A3415CLL_A3413CLL_A3417CLL_A3416
CBEI290402 CBEI_4907CBEI_4907CBEI_4905CBEI_4909CBEI_4908
CACE272562 CAC1664CAC1664CAC2237CAC2239
CABO218497 CAB461CAB461CAB132CAB262CAB790
BXEN266265 BXE_B2201BXE_B2201BXE_B2863BXE_B1279
BWEI315730 BCERKBAB4_4706BCERKBAB4_4706BCERKBAB4_4709BCERKBAB4_4710BCERKBAB4_4707
BTHU412694 BALH_4428BALH_4428BALH_4431BALH_4432BALH_4429
BTHU281309 BT9727_4595BT9727_4595BT9727_4598BT9727_4599BT9727_4596
BSUB BSU30940BSU30940BSU30970BSU30980BSU30950
BSP376 BRADO0743BRADO0743BRADO6613BRADO5817BRADO6612
BLON206672 BL0597BL0597BL0866BL0999
BLIC279010 BL01415BL01415BL01418BL01419BL01416
BJAP224911 BLR8139BLR8139BLR6458BLR6768BLR6459
BHAL272558 BH1084BH1084BH1087BH1085
BCER572264 BCA_4998BCA_4998BCA_5001BCA_5002BCA_4999
BCER405917 BCE_5024BCE_5024BCE_5027BCE_5028BCE_5025
BCER315749 BCER98_3500BCER98_3500BCER98_3503BCER98_3504BCER98_3501
BCER288681 BCE33L4617BCE33L4617BCE33L4620BCE33L4621BCE33L4618
BCER226900 BC_4863BC_4863BC_4866BC_4867BC_4864
BANT592021 BAA_5131BAA_5131BAA_5134BAA_5135BAA_5132
BANT568206 BAMEG_5152BAMEG_5152BAMEG_5155BAMEG_5156BAMEG_5153
BANT261594 GBAA5119GBAA5119GBAA5122GBAA5123GBAA5120
BANT260799 BAS4757BAS4757BAS4760BAS4761BAS4758
AVAR240292 AVA_2996AVA_2996AVA_2020AVA_4616AVA_4775
ASP1667 ARTH_0736ARTH_0736ARTH_2140ARTH_0739
ASAL382245 ASA_2289ASA_2289ASA_1835ASA_0761ASA_0496
APLE434271 APJL_1244APJL_1244APJL_0364APJL_0362APJL_0365
APLE416269 APL_1232APL_1232APL_0348APL_0346APL_0349
ANAE240017 ANA_1352ANA_1352ANA_0574ANA_1351
AMET293826 AMET_1678AMET_1678AMET_2948AMET_2949AMET_2946
AMAR329726 AM1_D0200AM1_D0200AM1_2282AM1_0996AM1_2022
ALAI441768 ACL_0528ACL_0528ACL_0519ACL_0529ACL_0518
AHYD196024 AHA_2431AHA_2431AHA_2740AHA_3616AHA_3804
AFER243159 AFE_2511AFE_2511AFE_0270AFE_0272AFE_0427
ADEH290397 ADEH_0864ADEH_0864ADEH_0100ADEH_3716ADEH_0135
ACRY349163 ACRY_0130ACRY_0130ACRY_0131ACRY_2936ACRY_0132
ACEL351607 ACEL_0680ACEL_0680ACEL_1821ACEL_0676
ABAC204669 ACID345_3051ACID345_3051ACID345_1020ACID345_0241ACID345_3349
AAUR290340 AAUR_0907AAUR_0907AAUR_2136AAUR_0910
AAEO224324 AQ_717AQ_718AQ_722AQ_721


Organism features enriched in list (features available for 249 out of the 268 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Bubonic_plague 0.005861966
Disease:Dysentery 0.005861966
Disease:Gastroenteritis 0.00201371113
Disease:Pharyngitis 0.001037288
Disease:Pneumonia 0.00053121112
Disease:bronchitis_and_pneumonitis 0.001037288
Endospores:No 4.259e-665211
GC_Content_Range4:0-40 0.000021968213
GC_Content_Range4:40-60 0.0000439118224
GC_Content_Range7:0-30 0.0000186747
GC_Content_Range7:50-60 0.000085763107
Genome_Size_Range5:0-2 2.806e-838155
Genome_Size_Range5:2-4 0.001922469197
Genome_Size_Range5:4-6 1.056e-11116184
Genome_Size_Range9:0-1 0.0000419227
Genome_Size_Range9:1-2 0.000054736128
Genome_Size_Range9:4-5 0.00002605996
Genome_Size_Range9:5-6 3.519e-65788
Gram_Stain:Gram_Neg 0.0007273160333
Habitat:Host-associated 1.902e-662206
Habitat:Multiple 1.041e-8107178
Motility:Yes 0.0018482130267
Oxygen_Req:Anaerobic 0.000457629102
Oxygen_Req:Facultative 1.837e-6112201
Oxygen_Req:Microaerophilic 0.0033875218
Shape:Coccus 0.00897112682
Shape:Irregular_coccus 0.0053426217
Shape:Rod 3.106e-9182347
Shape:Sphere 0.0021309219
Shape:Spiral 0.0010771634
Temp._range:Hyperthermophilic 0.0067088423
Temp._range:Mesophilic 0.0000975219473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 262
Effective number of orgs (counting one per cluster within 468 clusters): 200

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VEIS391735 ncbi Verminephrobacter eiseniae EF01-20
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS11
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB41
TSP1755 Thermoanaerobacter sp.1
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332231
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TACI273075 ncbi Thermoplasma acidophilum DSM 17281
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STHE292459 ncbi Symbiobacterium thermophilum IAM 148631
SSP644076 Silicibacter sp. TrichCH4B0
SSP292414 ncbi Ruegeria sp. TM10400
SSED425104 ncbi Shewanella sediminis HAW-EB30
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SPEA398579 ncbi Shewanella pealeana ATCC 7003450
SMAR399550 ncbi Staphylothermus marinus F10
SLAC55218 Ruegeria lacuscaerulensis0
SHAL458817 ncbi Shewanella halifaxensis HAW-EB41
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGLO343509 ncbi Sodalis glossinidius morsitans0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SDEN318161 ncbi Shewanella denitrificans OS2170
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22560
RTYP257363 ncbi Rickettsia typhi Wilmington0
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-30
RMET266264 ncbi Ralstonia metallidurans CH340
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97901
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP296591 ncbi Polaromonas sp. JS6660
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PLUT319225 ncbi Chlorobium luteolum DSM 2731
PISL384616 ncbi Pyrobaculum islandicum DSM 41841
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W831
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM21
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OANT439375 ncbi Ochrobactrum anthropi ATCC 491880
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP266779 ncbi Chelativorans sp. BNC11
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM10
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR394221 ncbi Maricaulis maris MCS100
MMAR267377 ncbi Methanococcus maripaludis S21
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MACE188937 ncbi Methanosarcina acetivorans C2A1
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
JSP375286 ncbi Janthinobacterium sp. Marseille1
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HCHE349521 ncbi Hahella chejuensis KCTC 23960
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HARS204773 ncbi Herminiimonas arsenicoxydans1
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GOXY290633 ncbi Gluconobacter oxydans 621H0
GKAU235909 ncbi Geobacillus kaustophilus HTA4260
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CVIO243365 ncbi Chromobacterium violaceum ATCC 124720
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CSAL290398 ncbi Chromohalobacter salexigens DSM 30430
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29011
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFET360106 ncbi Campylobacter fetus fetus 82-400
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C1
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD31
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB150
BVIE269482 ncbi Burkholderia vietnamiensis G41
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BSUI470137 ncbi Brucella suis ATCC 234450
BSUI204722 ncbi Brucella suis 13300
BSP36773 Burkholderia sp.1
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPUM315750 ncbi Bacillus pumilus SAFR-0320
BPSE320373 ncbi Burkholderia pseudomallei 6681
BPSE320372 ncbi Burkholderia pseudomallei 1710b1
BPSE272560 ncbi Burkholderia pseudomallei K962431
BPER257313 ncbi Bordetella pertussis Tohama I1
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23080
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M0
BMAL320389 ncbi Burkholderia mallei NCTC 102470
BMAL320388 ncbi Burkholderia mallei SAVP10
BMAL243160 ncbi Burkholderia mallei ATCC 233440
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BCLA66692 ncbi Bacillus clausii KSM-K160
BCIC186490 Candidatus Baumannia cicadellinicola0
BCEN331272 ncbi Burkholderia cenocepacia HI24241
BCEN331271 ncbi Burkholderia cenocepacia AU 10541
BCAN483179 ncbi Brucella canis ATCC 233650
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAMY326423 ncbi Bacillus amyloliquefaciens FZB420
BAMB398577 ncbi Burkholderia ambifaria MC40-61
BAMB339670 ncbi Burkholderia ambifaria AMMD1
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9410
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP232721 ncbi Acidovorax sp. JS420
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
AMAR234826 ncbi Anaplasma marginale St. Maries0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ACAU438753 ncbi Azorhizobium caulinodans ORS 5711
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAU360910 ncbi Bordetella avium 197N0


Names of the homologs of the genes in the group in each of these orgs
  EG10560   EG10380   EG10379   EG10378   EG10377   
ZMOB264203
XFAS405440
XFAS183190
XFAS160492
XAUT78245
WSUC273121
WPIP955
WPIP80849
VEIS391735
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116 TVN0081
TTEN273068 TTE1805
TSP1755 TETH514_1209
TPSE340099 TETH39_0695
TPAL243276
TDEN326298
TACI273075 TA1486
SWOL335541
STRO369723
STHE292459 STH1120
SSP644076
SSP292414
SSED425104
SSAP342451
SPEA398579
SMAR399550
SLAC55218
SHAL458817 SHAL_3989
SHAE279808
SGLO343509
SEPI176280
SEPI176279
SDEN318161
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037
SALA317655
RTYP257363
RRIC452659
RRIC392021
RPRO272947
RPOM246200
RMET266264
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RAKA293614
PTOR263820 PTO0067
PSP56811
PSP312153
PSP296591
PPEN278197
PLUT319225 PLUT_0220
PISL384616 PISL_0967
PHAL326442
PGIN242619 PG_1793
PCRY335284
PAST100379
PARS340102 PARS_1877
PARC259536
PAER178306 PAE3430
OTSU357244
OANT439375
NSEN222891
NPHA348780
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NGON242231
MTHE187420 MTH1759
MSYN262723
MSTA339860
MSP266779 MESO_2677
MPUL272635
MPNE272634
MPET420662
MPEN272633
MMYC272632
MMAZ192952 MM3109
MMAR444158 MMARC6_1380
MMAR426368 MMARC7_0539
MMAR402880 MMARC5_0299
MMAR394221
MMAR267377 MMP1294
MLEP272631 ML1069
MLAB410358
MKAN190192 MK0917
MJAN243232 MJ_1606
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_1203
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBAR269797
MART243272
MAEO419665 MAEO_0007
MACE188937 MA3025
LWEL386043
LSPH444177
LSAK314315
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LMON265669
LMON169963
LMES203120
LJOH257314
LINT363253
LINT267671
LINT189518
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LBRE387344
LBOR355277
LBOR355276
JSP375286 MMA_0645
ILOI283942
IHOS453591
HWAL362976
HSP64091 VNG0064G
HSAL478009 OE1114F
HPYL85963
HPYL357544
HPY
HNEP81032
HMUK485914
HMAR272569
HHEP235279
HDUC233412
HCHE349521
HBUT415426
HARS204773 HEAR0727
HACI382638
GOXY290633
GKAU235909
ERUM302409
ERUM254945
ELIT314225
EFAE226185
ECHA205920
ECAN269484
DSP255470
DSP216389
DSHI398580
DPSY177439
DNOD246195
DETH243164
CVIO243365
CVES412965
CTET212717
CTEP194439 CT_2012
CSUL444179
CSP78
CSAL290398
CRUT413404
CPSY167879
CPEL335992
CMAQ397948 CMAQ_0561
CKOR374847
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CHYD246194 CHY_0976
CHOM360107
CFET360106
CDES477974 DAUD_1322
CCUR360105
CCON360104
CCHL340177 CAG_1808
CBUR434922
CBUR360115
CBUR227377
CBOT536232
CBOT515621
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CBLO291272
CBLO203907
CAULO
BVIE269482 BCEP1808_5812
BTUR314724
BTRI382640
BSUI470137
BSUI204722
BSP36773 BCEP18194_C7032
BSP107806
BQUI283165
BPUM315750
BPSE320373 BURPS668_1543
BPSE320372 BURPS1710B_A1870
BPSE272560 BPSL2076
BPER257313 BP1328
BOVI236
BMEL359391
BMEL224914
BMAL320389
BMAL320388
BMAL243160
BHER314723
BHEN283166
BGAR290434
BCLA66692
BCIC186490
BCEN331272 BCEN2424_6497
BCEN331271 BCEN_1332
BCAN483179
BBUR224326
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BAMY326423
BAMB398577 BAMMC406_6322
BAMB339670 BAMB_5592
BAFZ390236
BABO262698
AYEL322098
AURANTIMONAS
ASP62977
ASP232721
APHA212042
APER272557
AORE350688
AMAR234826
AFUL224325
ACAU438753 AZC_4116
ABUT367737
ABOR393595
ABAU360910


Organism features enriched in list (features available for 245 out of the 262 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 7.155e-61617
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00006321111
Endospores:No 0.0019716104211
GC_Content_Range4:0-40 2.156e-8121213
GC_Content_Range4:60-100 0.000036841145
GC_Content_Range7:0-30 1.453e-83847
GC_Content_Range7:30-40 0.003653483166
GC_Content_Range7:50-60 0.001574532107
GC_Content_Range7:60-70 0.000704441134
Genome_Size_Range5:0-2 9.972e-1097155
Genome_Size_Range5:2-4 0.0003962101197
Genome_Size_Range5:4-6 5.462e-1437184
Genome_Size_Range5:6-10 0.00111621047
Genome_Size_Range9:0-1 2.991e-72427
Genome_Size_Range9:1-2 0.000045473128
Genome_Size_Range9:2-3 0.004747162120
Genome_Size_Range9:4-5 0.00001112296
Genome_Size_Range9:5-6 5.486e-81588
Genome_Size_Range9:6-8 0.0077918938
Habitat:Host-associated 7.531e-6111206
Habitat:Multiple 8.891e-749178
Optimal_temp.:25-30 0.0025382219
Optimal_temp.:30-37 3.065e-61718
Oxygen_Req:Facultative 0.000332666201
Oxygen_Req:Microaerophilic 0.00162451418
Pathogenic_in:Cattle 0.005313866
Salinity:Non-halophilic 0.006150334106
Shape:Irregular_coccus 0.00308251317
Shape:Rod 3.829e-9112347
Shape:Sphere 0.00014441619
Shape:Spiral 4.581e-62734
Temp._range:Mesophilic 0.0060668188473



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 20
Effective number of orgs (counting one per cluster within 468 clusters): 15

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
CPNE182082 ncbi Chlamydophila pneumoniae TW-183 0.00015122475
CPNE138677 ncbi Chlamydophila pneumoniae J138 0.00015432485
CPNE115711 ncbi Chlamydophila pneumoniae AR39 0.00016392515
CPNE115713 ncbi Chlamydophila pneumoniae CWL029 0.00016392515
CTRA471472 ncbi Chlamydia trachomatis 434/Bu 0.00017402545
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis 0.00017752555
CMUR243161 ncbi Chlamydia muridarum Nigg 0.00018462575
CABO218497 ncbi Chlamydophila abortus S26/3 0.00019582605
CFEL264202 ncbi Chlamydophila felis Fe/C-56 0.00019962615
CCAV227941 ncbi Chlamydophila caviae GPIC 0.00025502745
ALAI441768 ncbi Acholeplasma laidlawii PG-8A 0.00245974305
PMAR167540 Prochlorococcus marinus pastoris MED4ax 0.00436394825
PMAR167542 ncbi Prochlorococcus marinus MIT 9515 0.00469154895
PMAR146891 ncbi Prochlorococcus marinus AS9601 0.00473994905
PMAR167546 ncbi Prochlorococcus marinus MIT 9301 0.00498774955
PMAR74546 ncbi Prochlorococcus marinus MIT 9312 0.00551455055
PMAR93060 ncbi Prochlorococcus marinus MIT 9215 0.00590915125
PMAR59920 ncbi Prochlorococcus marinus NATL2A 0.00764795395
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP1375 0.00823485475
PMAR167555 ncbi Prochlorococcus marinus NATL1A 0.00846395505


Names of the homologs of the genes in the group in each of these orgs
  EG10560   EG10380   EG10379   EG10378   EG10377   
CPNE182082 CPB0316CPB0316CPB0631CPB0494CPB0983
CPNE138677 CPJ0307CPJ0307CPJ0607CPJ0475CPJ0948
CPNE115711 CP_0451CP_0451CP_0140CP_0279CP_0911
CPNE115713 CPN0307CPN0307CPN0607CPN0475CPN0948
CTRA471472 CTL0500CTL0500CTL0750CTL0245CTL0167
CTRA471473 CTLON_0496CTLON_0496CTLON_0745CTLON_0241CTLON_0168
CMUR243161 TC_0519TC_0519TC_0776TC_0257TC_0181
CABO218497 CAB461CAB461CAB132CAB262CAB790
CFEL264202 CF0532CF0532CF0873CF0740CF0193
CCAV227941 CCA_00475CCA_00475CCA_00133CCA_00268CCA_00821
ALAI441768 ACL_0528ACL_0528ACL_0519ACL_0529ACL_0518
PMAR167540 PMM1601PMM1601PMM0769PMM0584PMM0609
PMAR167542 P9515ORF_1866P9515ORF_1866P9515ORF_0855P9515ORF_0685P9515ORF_0710
PMAR146891 A9601_18101A9601_18101A9601_08311A9601_06401A9601_06651
PMAR167546 P9301ORF_1830P9301ORF_1830P9301ORF_0845P9301ORF_0625P9301ORF_0650
PMAR74546 PMT9312_1693PMT9312_1693PMT9312_0777PMT9312_0584PMT9312_0609
PMAR93060 P9215_18741P9215_18741P9215_08631P9215_06661P9215_06911
PMAR59920 PMN2A_1176PMN2A_1176PMN2A_0175PMN2A_0020PMN2A_0045
PMAR167539 PRO_1759PRO_1759PRO_0842PRO_1078PRO_1052
PMAR167555 NATL1_20511NATL1_20511NATL1_08071NATL1_06401NATL1_06651


Organism features enriched in list (features available for 19 out of the 20 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Singles 0.00207683286
Disease:Lymphogranuloma_vernerum 0.001007922
Disease:Pharyngitis 2.396e-1388
Disease:bronchitis_and_pneumonitis 2.396e-1388
GC_Content_Range7:30-40 0.001166412166
Genome_Size_Range5:0-2 4.988e-1219155
Genome_Size_Range9:1-2 2.945e-1017128
Habitat:Aquatic 0.0036063891
Optimal_temp.:37 0.00232659106
Oxygen_Req:Facultative 0.00290721201
Shape:Oval 0.000278935



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GLYCOGENSYNTH-PWY (glycogen biosynthesis I (from ADP-D-Glucose))2832220.6528
PWY-5941 (glycogen degradation II)3792530.5975
PWY-622 (starch biosynthesis)1471350.5480



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG10380   EG10379   EG10378   EG10377   
EG105600.999990.9994660.9995280.99956
EG103800.9994770.9995590.999558
EG103790.9996550.999815
EG103780.999708
EG10377



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PAIRWISE BLAST SCORES:

  EG10560   EG10380   EG10379   EG10378   EG10377   
EG105600.0f00---
EG1038000.0f0---
EG10379--0.0f0--
EG10378---0.0f0-
EG10377----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- GLYCOCAT-PWY (glycogen degradation I) (degree of match pw to cand: 0.286, degree of match cand to pw: 0.400, average score: 0.899)
  Genes in pathway or complex:
             0.9992 0.9987 EG10561 (malQ) AMYLOMALT-MONOMER (amylomaltase)
   *in cand* 0.9997 0.9995 EG10380 (glgP) GLYCOPHOSPHORYL-MONOMER (GlgP)
             0.9848 0.9703 EG12144 (pgm) PHOSPHOGLUCMUT-MONOMER (phosphoglucomutase)
             0.9993 0.9990 EG10381 (glgX) EG10381-MONOMER (glycogen phosphorylase-limit dextrin α-1,6-glucohydrolase)
   *in cand* 0.9997 0.9995 EG10560 (malP) MALDEXPHOSPHORYL-MONOMER (maltodextrin phosphorylase monomer)
             0.9959 0.9938 EG10565 (malZ) MALTODEXGLUCOSID-MONOMER (maltodextrin glucosidase)
             0.9443 0.8708 EG12957 (glk) GLUCOKIN-MONOMER (glucokinase)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9996 EG10377 (glgA) GLYCOGENSYN-MONOMER (glycogen synthase)
   *in cand* 0.9997 0.9995 EG10378 (glgB) GLYCOGEN-BRANCH-MONOMER (1,4-α-glucan branching enzyme)
   *in cand* 0.9997 0.9995 EG10379 (glgC) GLUC1PADENYLTRANS-MONOMER (GlgC)

- GLYCOGENSYNTH-PWY (glycogen biosynthesis I (from ADP-D-Glucose)) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.600, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9997 0.9996 EG10377 (glgA) GLYCOGENSYN-MONOMER (glycogen synthase)
   *in cand* 0.9997 0.9995 EG10378 (glgB) GLYCOGEN-BRANCH-MONOMER (1,4-α-glucan branching enzyme)
   *in cand* 0.9997 0.9995 EG10379 (glgC) GLUC1PADENYLTRANS-MONOMER (GlgC)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9995 EG10380 (glgP) GLYCOPHOSPHORYL-MONOMER (GlgP)
   *in cand* 0.9997 0.9995 EG10560 (malP) MALDEXPHOSPHORYL-MONOMER (maltodextrin phosphorylase monomer)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10377 EG10378 EG10379 EG10380 (centered at EG10379)
EG10560 (centered at EG10560)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG10560   EG10380   EG10379   EG10378   EG10377   
302/623310/623301/623324/623308/623
AAEO224324:0:Tyes-0143
AAUR290340:2:Tyes0012003-
AAVE397945:0:Tyes--9410945
ABAC204669:0:Tyes2831283178603132
ACAU438753:0:Tyes---0-
ACEL351607:0:Tyes4411440-
ACRY349163:8:Tyes00128202
ADEH290397:0:Tyes7677670365235
AEHR187272:0:Tyes--210
AFER243159:0:Tyes2207220702154
AHYD196024:0:Tyes0030211401306
ALAI441768:0:Tyes10101110
AMAR329726:5:Tyes00---
AMAR329726:9:Tyes--127301014
AMET293826:0:Tyes00126312641261
ANAE240017:0:Tyes7107100709-
APLE416269:0:Tyes883883203
APLE434271:0:Tno861861203
ASAL382245:5:Tyes1732173212932600
ASP1667:3:Tyes0014103-
ASP62928:0:Tyes--72076
ASP76114:2:Tyes--3400
AVAR240292:3:Tyes976976025992759
BAMB339670:1:Tno---0-
BAMB398577:1:Tno---0-
BANT260799:0:Tno00341
BANT261594:2:Tno00341
BANT568206:2:Tyes00341
BANT592021:2:Tno00341
BBRO257310:0:Tyes---30
BCEN331271:2:Tno---0-
BCEN331272:1:Tyes---0-
BCER226900:1:Tyes00231
BCER288681:0:Tno00341
BCER315749:1:Tyes00341
BCER405917:1:Tyes00341
BCER572264:1:Tno00341
BFRA272559:1:Tyes412--0-
BFRA295405:0:Tno500--0-
BHAL272558:0:Tyes003-1
BJAP224911:0:Fyes1689168903131
BLIC279010:0:Tyes00341
BLON206672:0:Tyes00268399-
BPAR257311:0:Tno---10
BPER257313:0:Tyes---0-
BPET94624:0:Tyes---03
BPSE272560:1:Tyes---0-
BPSE320372:1:Tno---0-
BPSE320373:1:Tno---0-
BSP36773:0:Tyes---0-
BSP376:0:Tyes00557748325576
BSUB:0:Tyes00341
BTHA271848:0:Tno-2-01
BTHE226186:0:Tyes535--0-
BTHU281309:1:Tno00341
BTHU412694:1:Tno00341
BVIE269482:5:Tyes---0-
BWEI315730:4:Tyes00341
BXEN266265:1:Tyes656656-01555
CABO218497:0:Tyes3203200130642
CACE272562:1:Tyes00564-566
CBEI290402:0:Tyes22043
CBOT508765:1:Tyes22043
CCAV227941:1:Tyes3393390135681
CCHL340177:0:Tyes----0
CDES477974:0:Tyes----0
CDIF272563:1:Tyes33016842
CDIP257309:0:Tyes558558073-
CEFF196164:0:Fyes832-0149-
CFEL264202:1:Tyes3553557045660
CGLU196627:0:Tyes1891890105-
CHUT269798:0:Tyes---02454
CHYD246194:0:Tyes--0--
CJAP155077:0:Tyes-0275276277
CJEI306537:0:Tyes0012469-
CKLU431943:1:Tyes22043
CMAQ397948:0:Tyes--0--
CMET456442:0:Tyes00---
CMIC31964:2:Tyes239239112202190
CMIC443906:2:Tyes2233501596
CMUR243161:1:Tyes336336589760
CNOV386415:0:Tyes111864-0
CPER195102:1:Tyes23522352415500
CPER195103:0:Tno752752-0-
CPER289380:3:Tyes21732173414510
CPHY357809:0:Tyes00--148
CPNE115711:1:Tyes3083080137759
CPNE115713:0:Tno00298161655
CPNE138677:0:Tno00304166660
CPNE182082:0:Tno00318178688
CPRO264201:0:Fyes00316891524
CSP501479:8:Fyes00213
CTEP194439:0:Tyes----0
CTRA471472:0:Tyes333333586760
CTRA471473:0:Tno333333586760
DARO159087:0:Tyes--560
DDES207559:0:Tyes819819-01
DGEO319795:1:Tyes-33201181119
DHAF138119:0:Tyes33240
DOLE96561:0:Tyes470470-01
DRAD243230:3:Tyes--107612320
DRED349161:0:Tyes-0101710151019
DVUL882:1:Tyes106106-01
ECAR218491:0:Tyes00241
ECOL199310:0:Tno00241
ECOL316407:0:Tno1414203
ECOL331111:6:Tno00241
ECOL362663:0:Tno00241
ECOL364106:1:Tno00241
ECOL405955:2:Tyes00241
ECOL409438:6:Tyes00241
ECOL413997:0:Tno00241
ECOL439855:4:Tno00241
ECOL469008:0:Tno1515203
ECOL481805:0:Tno1616203
ECOL585034:0:Tno00241
ECOL585035:0:Tno00241
ECOL585055:0:Tno00241
ECOL585056:2:Tno00241
ECOL585057:0:Tno00241
ECOL585397:0:Tno00241
ECOL83334:0:Tno00241
ECOLI:0:Tno010121411
ECOO157:0:Tno00241
EFER585054:1:Tyes00241
ESP42895:1:Tyes00241
FALN326424:0:Tyes1288128801306-
FJOH376686:0:Tyes--130
FMAG334413:1:Tyes00808809806
FNOD381764:0:Tyes116611661226-0
FNUC190304:0:Tyes44230
FPHI484022:1:Tyes00352
FRANT:0:Tno33-02
FSP106370:0:Tyes1982198201999-
FSP1855:0:Tyes20-10360-
FSUC59374:0:Tyes2428242802352397
FTUL351581:0:Tno44203
FTUL393011:0:Tno44203
FTUL393115:0:Tyes33-02
FTUL401614:0:Tyes44203
FTUL418136:0:Tno00241
FTUL458234:0:Tno44203
GBET391165:0:Tyes16641664159001591
GFOR411154:0:Tyes---1890
GMET269799:1:Tyes001-406
GSUL243231:0:Tyes10371037-13290
GTHE420246:1:Tyes00341
GURA351605:0:Tyes29822982--0
GVIO251221:0:Tyes666633693770
HARS204773:0:Tyes--0--
HAUR316274:2:Tyes-035921313374
HHAL349124:0:Tyes--210
HINF281310:0:Tyes00241
HINF374930:0:Tyes220-1
HINF71421:0:Tno44203
HMOD498761:0:Tyes2467454--0
HSAL478009:4:Tyes--0--
HSOM205914:1:Tyes00241
HSOM228400:0:Tno00241
HSP64091:2:Tno--0--
JSP290400:1:Tyes55102
JSP375286:0:Tyes--0--
KPNE272620:2:Tyes00241
KRAD266940:2:Fyes--29560-
LACI272621:0:Tyes44103
LBIF355278:2:Tyes00962-1961
LBIF456481:2:Tno00988-2033
LCAS321967:1:Tyes00341
LCHO395495:0:Tyes22014451
LLAC272622:5:Tyes5495495470548
LLAC272623:0:Tyes330-2
LPLA220668:0:Tyes44103
LXYL281090:0:Tyes--077-
MABS561007:1:Tyes5095090117-
MACE188937:0:Tyes--0--
MAEO419665:0:Tyes----0
MAER449447:0:Tyes13961396219648160
MAQU351348:2:Tyes--012
MAVI243243:0:Tyes--0184-
MBOV233413:0:Tno-12201201835
MBOV410289:0:Tno-1210119-
MCAP243233:0:Tyes10201020012
MEXT419610:0:Tyes11-6890
MFLA265072:0:Tyes00345344449
MGIL350054:3:Tyes2971297101542087
MHUN323259:0:Tyes-0---
MJAN243232:2:Tyes----0
MKAN190192:0:Tyes--0--
MLEP272631:0:Tyes--0--
MLOT266835:2:Tyes00213
MMAG342108:0:Tyes95295209551
MMAR267377:0:Tyes----0
MMAR368407:0:Tyes00-3-
MMAR402880:1:Tyes----0
MMAR426368:0:Tyes----0
MMAR444158:0:Tyes----0
MMAZ192952:0:Tyes0----
MMOB267748:0:Tyes--023
MSED399549:0:Tyes--2-0
MSME246196:0:Tyes-01602-
MSP164756:1:Tno--1400-
MSP164757:0:Tno0-3842-
MSP189918:2:Tyes--1430-
MSP266779:3:Tyes---0-
MSP400668:0:Tyes--12270
MSP409:2:Tyes00-36202
MSUC221988:0:Tyes979979130
MTBCDC:0:Tno-13001281960
MTBRV:0:Tno-11901171838
MTHE187420:0:Tyes--0--
MTHE264732:0:Tyes-0--82
MTHE349307:0:Tyes00---
MTUB336982:0:Tno-1230121-
MTUB419947:0:Tyes-12101191907
MVAN350058:0:Tyes0032853082890
MXAN246197:0:Tyes--21922950
NARO279238:0:Tyes33120
NEUR228410:0:Tyes-0158415831824
NEUT335283:2:Tyes-14236766750
NFAR247156:2:Tyes-2368603236
NHAM323097:2:Tyes00-4-
NMUL323848:3:Tyes-0321
NOCE323261:1:Tyes131213121351340
NSP103690:6:Tyes563563397201173
NSP35761:1:Tyes5519210-
NSP387092:0:Tyes1010-01
NWIN323098:0:Tyes00-3-
OCAR504832:0:Tyes00-2610-
OIHE221109:0:Tyes44103
PABY272844:0:Tyes587587407-0
PACN267747:0:Tyes005661037-
PAER178306:0:Tyes--0--
PAER208963:0:Tyes2222-120
PAER208964:0:Tno00-921
PARS340102:0:Tyes--0--
PATL342610:0:Tyes21232123287215610
PCAR338963:0:Tyes00--1226
PDIS435591:0:Tyes277--0-
PENT384676:0:Tyes28742874-07
PFLU205922:0:Tyes00-22172230
PFLU216595:1:Tyes00-23122900
PFLU220664:0:Tyes00-24412454
PFUR186497:0:Tyes00--523
PGIN242619:0:Tyes---0-
PHOR70601:0:Tyes00198--
PING357804:0:Tyes561561019401926
PINT246198:1:Tyes00-1402-
PISL384616:0:Tyes--0--
PLUM243265:0:Fyes00---
PLUT319225:0:Tyes----0
PMAR146891:0:Tyes11681168190025
PMAR167539:0:Tyes9349340239213
PMAR167540:0:Tyes10371037186025
PMAR167542:0:Tyes11671167169025
PMAR167546:0:Tyes11891189218025
PMAR167555:0:Tyes14271427164025
PMAR59920:0:Tno11761176156025
PMAR74546:0:Tyes11321132193025
PMAR74547:0:Tyes15691569165410
PMAR93060:0:Tyes12261226198025
PMEN399739:0:Tyes1111-160
PMOB403833:0:Tyes-9480392194
PMUL272843:1:Tyes44203
PNAP365044:8:Tyes11203
PPRO298386:1:Tyes92492409221
PPUT160488:0:Tno986986-80
PPUT351746:0:Tyes31463146-08
PPUT76869:0:Tno14581458-80
PRUM264731:0:Tyes00-616-
PSP117:0:Tyes3983398307003022
PSTU379731:0:Tyes00-18201805
PSYR205918:0:Tyes00-21212620
PSYR223283:2:Tyes23672367-0356
PTHE370438:0:Tyes685---0
PTOR263820:0:Tyes---0-
RALB246199:0:Tyes03595188018791883
RCAS383372:0:Tyes0048-1866
RDEN375451:4:Tyes33120
RETL347834:4:Tyes---0-
RETL347834:5:Tyes002-3
REUT264198:2:Tyes33-0-
REUT381666:1:Tyes33-0-
RFER338969:1:Tyes00216511
RLEG216596:6:Tyes00213
RPAL258594:0:Tyes43834383032851
RPAL316055:0:Tyes39893989128910
RPAL316056:0:Tyes42564256030711
RPAL316057:0:Tyes620620131770
RPAL316058:0:Tyes411411114520
RRUB269796:1:Tyes0023291
RSAL288705:0:Tyes0016548-
RSOL267608:0:Tyes---03
RSP101510:3:Fyes-0451524999
RSP357808:0:Tyes307430742597-0
RSPH272943:4:Tyes4454454440443
RSPH349101:2:Tno4264264250424
RSPH349102:5:Tyes0026433
RXYL266117:0:Tyes00249715-
SACI330779:0:Tyes--0-2
SACI56780:0:Tyes25222522-0-
SAGA205921:0:Tno483483103
SAGA208435:0:Tno568568102
SAGA211110:0:Tyes628628103
SAVE227882:1:Fyes0-45285-
SBAL399599:3:Tyes22304
SBAL402882:1:Tno22304
SBOY300268:1:Tyes00241
SCO:2:Fyes--06420-
SDEG203122:0:Tyes22304
SDYS300267:1:Tyes7676130
SELO269084:0:Tyes82382346501157
SENT209261:0:Tno1010203
SENT220341:0:Tno1010203
SENT295319:0:Tno00241
SENT321314:2:Tno00241
SENT454169:2:Tno00241
SERY405948:0:Tyes00---
SFLE198214:0:Tyes00241
SFLE373384:0:Tno00241
SFUM335543:0:Tyes835835136013260
SGOR29390:0:Tyes00341
SHAL458817:0:Tyes--0--
SHIGELLA:0:Tno1414203
SLOI323850:0:Tyes22304
SMED366394:3:Tyes00213
SMEL266834:2:Tyes00213
SMUT210007:0:Tyes00341
SONE211586:1:Tyes22405
SPNE1313:0:Tyes980980103
SPNE170187:0:Tyes12371237103
SPNE171101:0:Tno941941103
SPNE487213:0:Tno855855103
SPNE487214:0:Tno10031003103
SPNE488221:0:Tno933933103
SPRO399741:1:Tyes00241
SPYO160490:0:Tno00---
SPYO186103:0:Tno00---
SPYO193567:0:Tno00---
SPYO198466:0:Tno00---
SPYO286636:0:Tno00---
SPYO293653:0:Tno00---
SPYO319701:0:Tyes00---
SPYO370551:0:Tno00---
SPYO370552:0:Tno00---
SPYO370553:0:Tno00---
SPYO370554:0:Tyes00---
SRUB309807:1:Tyes--10590-
SSOL273057:0:Tyes--2-0
SSON300269:1:Tyes00241
SSP1131:0:Tyes001109874979
SSP1148:0:Tyes00213811091054
SSP321327:0:Tyes54654604811041
SSP321332:0:Tyes157915790886650
SSP387093:0:Tyes1010-01
SSP64471:0:Tyes00144916481292
SSP84588:0:Tyes009751354856
SSP94122:1:Tyes22140
SSUI391295:0:Tyes00634637636
SSUI391296:0:Tyes429429043
STHE264199:0:Tyes00760--
STHE292459:0:Tyes--0--
STHE299768:0:Tno00759--
STHE322159:2:Tyes00---
STOK273063:0:Tyes--0-2
STYP99287:1:Tyes00241
TACI273075:0:Tyes--0--
TCRU317025:0:Tyes55034
TDEN243275:0:Tyes823823450-0
TDEN292415:0:Tyes00521
TELO197221:0:Tyes152115217150187
TERY203124:0:Tyes1662166222900288
TFUS269800:0:Tyes44-0-
TKOD69014:0:Tyes120612060-1583
TLET416591:0:Tyes--0-1128
TMAR243274:0:Tyes--0-642
TPEN368408:1:Tyes--34-0
TPET390874:0:Tno15761576660-0
TPSE340099:0:Tyes0----
TROS309801:1:Tyes--16680
TSP1755:0:Tyes0----
TSP28240:0:Tyes16371637683-0
TTEN273068:0:Tyes0----
TTHE262724:1:Tyes--0-4
TTHE300852:2:Tyes--4-0
TTUR377629:0:Tyes22304
TVOL273116:0:Tyes--0--
VCHO:0:Tyes----0
VCHO:1:Fyes006723-
VCHO345073:0:Tno225180-
VCHO345073:1:Tno----0
VFIS312309:1:Tyes55130
VPAR223926:0:Tyes7947940792-
VPAR223926:1:Tyes----0
VVUL196600:1:Tyes006542-
VVUL196600:2:Tyes----0
VVUL216895:0:Tno9639630965-
VVUL216895:1:Tno----0
XAXO190486:0:Tyes---10
XCAM190485:0:Tyes---10
XCAM314565:0:Tno---10
XCAM316273:0:Tno---2990
XCAM487884:0:Tno---10
XORY291331:0:Tno---820
XORY342109:0:Tyes---1070
XORY360094:0:Tno---1600
YENT393305:1:Tyes00241
YPES187410:5:Tno44203
YPES214092:3:Tno00241
YPES349746:2:Tno44203
YPES360102:3:Tyes00241
YPES377628:2:Tno355355130
YPES386656:2:Tno00241
YPSE273123:2:Tno00241
YPSE349747:2:Tno00241



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