CANDIDATE ID: 233

CANDIDATE ID: 233

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9967150e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G365 (flgI) (b1080)
   Products of gene:
     - FLGI-FLAGELLAR-P-RING (flagellar P-ring protein FlgI)
     - FLAGELLAR-MOTOR-COMPLEX (Flagellar Motor Complex)
     - CPLX0-7452 (Flagellum)

- G363 (flgG) (b1078)
   Products of gene:
     - FLGG-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgG)
     - FLAGELLAR-MOTOR-COMPLEX (Flagellar Motor Complex)
     - CPLX0-7452 (Flagellum)

- EG11967 (flgK) (b1082)
   Products of gene:
     - EG11967-MONOMER (flagellar biosynthesis, hook-filament junction protein 1)
     - CPLX0-7452 (Flagellum)

- EG11545 (flgL) (b1083)
   Products of gene:
     - EG11545-MONOMER (flagellar biosynthesis; hook-filament junction protein)
     - CPLX0-7452 (Flagellum)

- EG10321 (fliC) (b1923)
   Products of gene:
     - EG10321-MONOMER (flagellar biosynthesis; flagellin, filament structural protein)
     - CPLX0-7452 (Flagellum)



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 232
Effective number of orgs (counting one per cluster within 468 clusters): 164

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM44
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A5
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110185
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103315
XCAM487884 Xanthomonas campestris pv. paulliniae5
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-105
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80045
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339135
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3065
WSUC273121 ncbi Wolinella succinogenes DSM 17405
VVUL216895 ncbi Vibrio vulnificus CMCP65
VVUL196600 ncbi Vibrio vulnificus YJ0165
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106335
VFIS312309 ncbi Vibrio fischeri ES1145
VEIS391735 ncbi Verminephrobacter eiseniae EF01-25
VCHO345073 ncbi Vibrio cholerae O3955
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169615
TTUR377629 ncbi Teredinibacter turnerae T79015
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB44
TSP28240 Thermotoga sp.5
TSP1755 Thermoanaerobacter sp.4
TROS309801 ncbi Thermomicrobium roseum DSM 51594
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332234
TPET390874 ncbi Thermotoga petrophila RKU-15
TPAL243276 ncbi Treponema pallidum pallidum Nichols4
TMAR243274 ncbi Thermotoga maritima MSB85
TLET416591 ncbi Thermotoga lettingae TMO5
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12514
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252595
TDEN243275 ncbi Treponema denticola ATCC 354054
TCRU317025 ncbi Thiomicrospira crunogena XCL-25
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
SSP94122 ncbi Shewanella sp. ANA-35
SSON300269 ncbi Shigella sonnei Ss0465
SSED425104 ncbi Shewanella sediminis HAW-EB35
SRUB309807 ncbi Salinibacter ruber DSM 138555
SPRO399741 ncbi Serratia proteamaculans 5685
SPEA398579 ncbi Shewanella pealeana ATCC 7003455
SONE211586 ncbi Shewanella oneidensis MR-14
SLOI323850 ncbi Shewanella loihica PV-45
SHAL458817 ncbi Shewanella halifaxensis HAW-EB45
SGLO343509 ncbi Sodalis glossinidius morsitans5
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SDEN318161 ncbi Shewanella denitrificans OS2175
SDEG203122 ncbi Saccharophagus degradans 2-405
SBOY300268 ncbi Shigella boydii Sb2275
SBAL402882 ncbi Shewanella baltica OS1855
SBAL399599 ncbi Shewanella baltica OS1955
SALA317655 ncbi Sphingopyxis alaskensis RB22565
SACI56780 ncbi Syntrophus aciditrophicus SB5
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170255
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170294
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.14
RSOL267608 ncbi Ralstonia solanacearum GMI10004
RPAL316058 ncbi Rhodopseudomonas palustris HaA24
RPAL316056 ncbi Rhodopseudomonas palustris BisB184
RMET266264 ncbi Ralstonia metallidurans CH345
RFER338969 ncbi Rhodoferax ferrireducens T1185
REUT381666 ncbi Ralstonia eutropha H165
REUT264198 ncbi Ralstonia eutropha JMP1345
PTHE370438 ncbi Pelotomaculum thermopropionicum SI4
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30005
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a5
PSTU379731 ncbi Pseudomonas stutzeri A15015
PSP117 Pirellula sp.5
PPUT76869 ncbi Pseudomonas putida GB-15
PPUT351746 ncbi Pseudomonas putida F15
PPUT160488 ncbi Pseudomonas putida KT24405
PPRO298386 ncbi Photobacterium profundum SS95
PMOB403833 ncbi Petrotoga mobilis SJ955
PMEN399739 ncbi Pseudomonas mendocina ymp5
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO15
PING357804 ncbi Psychromonas ingrahamii 374
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1255
PFLU220664 ncbi Pseudomonas fluorescens Pf-55
PFLU216595 ncbi Pseudomonas fluorescens SBW255
PFLU205922 ncbi Pseudomonas fluorescens Pf0-15
PENT384676 ncbi Pseudomonas entomophila L485
PCAR338963 ncbi Pelobacter carbinolicus DSM 23805
PATL342610 ncbi Pseudoalteromonas atlantica T6c5
PAER208964 ncbi Pseudomonas aeruginosa PAO15
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA145
NSP387092 ncbi Nitratiruptor sp. SB155-25
NSP35761 Nocardioides sp.4
NOCE323261 ncbi Nitrosococcus oceani ATCC 197075
NMUL323848 ncbi Nitrosospira multiformis ATCC 251965
NEUT335283 ncbi Nitrosomonas eutropha C915
NEUR228410 ncbi Nitrosomonas europaea ATCC 197185
MTHE264732 ncbi Moorella thermoacetica ATCC 390734
MSP400668 ncbi Marinomonas sp. MWYL15
MPET420662 ncbi Methylibium petroleiphilum PM15
MFLA265072 ncbi Methylobacillus flagellatus KT5
MAQU351348 ncbi Marinobacter aquaeolei VT85
LSPH444177 ncbi Lysinibacillus sphaericus C3-414
LPNE400673 ncbi Legionella pneumophila Corby5
LPNE297246 ncbi Legionella pneumophila Paris5
LPNE297245 ncbi Legionella pneumophila Lens5
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 15
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-005
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1305
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566015
LCHO395495 ncbi Leptothrix cholodnii SP-65
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1975
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5505
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)4
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)4
JSP375286 ncbi Janthinobacterium sp. Marseille5
ILOI283942 ncbi Idiomarina loihiensis L2TR5
HPYL85963 ncbi Helicobacter pylori J995
HPYL357544 ncbi Helicobacter pylori HPAG15
HPY ncbi Helicobacter pylori 266955
HMOD498761 ncbi Heliobacterium modesticaldum Ice14
HHEP235279 ncbi Helicobacter hepaticus ATCC 514495
HHAL349124 ncbi Halorhodospira halophila SL15
HCHE349521 ncbi Hahella chejuensis KCTC 23965
HARS204773 ncbi Herminiimonas arsenicoxydans5
HACI382638 ncbi Helicobacter acinonychis Sheeba5
GURA351605 ncbi Geobacter uraniireducens Rf45
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-24
GSUL243231 ncbi Geobacter sulfurreducens PCA5
GMET269799 ncbi Geobacter metallireducens GS-155
GKAU235909 ncbi Geobacillus kaustophilus HTA4264
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B15
ESP42895 Enterobacter sp.5
EFER585054 ncbi Escherichia fergusonii ATCC 354695
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough4
DRED349161 ncbi Desulfotomaculum reducens MI-14
DPSY177439 ncbi Desulfotalea psychrophila LSv545
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G205
DARO159087 ncbi Dechloromonas aromatica RCB5
CVIO243365 ncbi Chromobacterium violaceum ATCC 124725
CTET212717 ncbi Clostridium tetani E884
CSAL290398 ncbi Chromohalobacter salexigens DSM 30435
CPSY167879 ncbi Colwellia psychrerythraea 34H5
CPHY357809 ncbi Clostridium phytofermentans ISDg4
CNOV386415 ncbi Clostridium novyi NT4
CJEJ407148 ncbi Campylobacter jejuni jejuni 811165
CJEJ360109 ncbi Campylobacter jejuni doylei 269.975
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1765
CJEJ195099 ncbi Campylobacter jejuni RM12215
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111685
CJAP155077 Cellvibrio japonicus5
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29014
CFET360106 ncbi Campylobacter fetus fetus 82-405
CDIF272563 ncbi Clostridium difficile 6304
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C4
CCUR360105 ncbi Campylobacter curvus 525.925
CCON360104 ncbi Campylobacter concisus 138265
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto4
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6574
CBOT498213 ncbi Clostridium botulinum B1 str. Okra4
CBOT441772 ncbi Clostridium botulinum F str. Langeland4
CBOT441771 ncbi Clostridium botulinum A str. Hall4
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193974
CBOT36826 Clostridium botulinum A4
CACE272562 ncbi Clostridium acetobutylicum ATCC 8244
BVIE269482 ncbi Burkholderia vietnamiensis G45
BTHA271848 ncbi Burkholderia thailandensis E2645
BSUB ncbi Bacillus subtilis subtilis 1684
BSP36773 Burkholderia sp.5
BPUM315750 ncbi Bacillus pumilus SAFR-0324
BPSE320373 ncbi Burkholderia pseudomallei 6685
BPSE320372 ncbi Burkholderia pseudomallei 1710b5
BPSE272560 ncbi Burkholderia pseudomallei K962435
BPET94624 Bordetella petrii5
BPER257313 ncbi Bordetella pertussis Tohama I5
BPAR257311 ncbi Bordetella parapertussis 128224
BMAL320389 ncbi Burkholderia mallei NCTC 102475
BMAL320388 ncbi Burkholderia mallei SAVP15
BMAL243160 ncbi Burkholderia mallei ATCC 233445
BLIC279010 ncbi Bacillus licheniformis ATCC 145804
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1104
BHAL272558 ncbi Bacillus halodurans C-1254
BGAR290434 ncbi Borrelia garinii PBi4
BCLA66692 ncbi Bacillus clausii KSM-K164
BCER315749 ncbi Bacillus cytotoxicus NVH 391-984
BCEN331272 ncbi Burkholderia cenocepacia HI24245
BCEN331271 ncbi Burkholderia cenocepacia AU 10545
BBUR224326 ncbi Borrelia burgdorferi B314
BBRO257310 ncbi Bordetella bronchiseptica RB505
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1005
BAMY326423 ncbi Bacillus amyloliquefaciens FZB424
BAMB398577 ncbi Burkholderia ambifaria MC40-65
BAMB339670 ncbi Burkholderia ambifaria AMMD5
BAFZ390236 ncbi Borrelia afzelii PKo4
ASP62928 ncbi Azoarcus sp. BH725
ASP232721 ncbi Acidovorax sp. JS424
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4495
AORE350688 ncbi Alkaliphilus oremlandii OhILAs4
AMET293826 ncbi Alkaliphilus metalliredigens QYMF4
AHYD196024 Aeromonas hydrophila dhakensis5
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-15
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C5
ABUT367737 ncbi Arcobacter butzleri RM40184
ABAU360910 ncbi Bordetella avium 197N5
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3455
AAVE397945 ncbi Acidovorax citrulli AAC00-15
AAEO224324 ncbi Aquifex aeolicus VF55


Names of the homologs of the genes in the group in each of these orgs
  G365   G363   EG11967   EG11545   EG10321   
ZMOB264203 ZMO0607ZMO0609ZMO0605ZMO0629
YPSE349747 YPSIP31758_2317YPSIP31758_2319YPSIP31758_2314YPSIP31758_2313YPSIP31758_2281
YPSE273123 YPTB1679YPTB1677YPTB1681YPTB1682YPTB1714
YPES386656 YPDSF_1318YPDSF_1320YPDSF_1316YPDSF_1315YPDSF_1284
YPES377628 YPN_2318YPN_2320YPN_2316YPN_2315YPN_2281
YPES360102 YPA_1181YPA_1179YPA_1183YPA_1184YPA_1218
YPES349746 YPANGOLA_A2005YPANGOLA_A2003YPANGOLA_A2007YPANGOLA_A2009YPANGOLA_A2023
YPES214092 YPO1806YPO1804YPO1808YPO1809YPO1842
YPES187410 Y2503Y2505Y2501Y2499Y2465
YENT393305 YE2553YE2555YE2551YE2550YE2522
XORY360094 XOOORF_2809XOOORF_2807XOOORF_2811XOOORF_2812XOOORF_2813
XORY342109 XOO2435XOO2433XOO2437XOO2438XOO2439
XORY291331 XOO2577XOO2575XOO2579XOO2580XOO2581
XCAM487884 XCC-B100_2243XCC-B100_2245XCC-B100_2241XCC-B100_2240XCC-B100_2239
XCAM316273 XCAORF_2224XCAORF_2226XCAORF_2222XCAORF_2221XCAORF_2219
XCAM314565 XC_2241XC_2239XC_2243XC_2244XC_2245
XCAM190485 XCC1945XCC1947XCC1943XCC1942XCC1941
XAXO190486 XAC1979XAC1981XAC1977XAC1976XAC1975
WSUC273121 WS1592WS1802WS0259WS0498WS2198
VVUL216895 VV1_0219VV1_0221VV1_0217VV1_0216VV1_1926
VVUL196600 VV0967VV0965VV0969VV0970VV2491
VPAR223926 VP0783VP0781VP0785VPA0274VP2259
VFIS312309 VF1870VF1872VF1868VF1867VF1866
VEIS391735 VEIS_0562VEIS_0564VEIS_0560VEIS_0559VEIS_4397
VCHO345073 VC0395_A1785VC0395_A1787VC0395_A1783VC0395_A1782VC0395_A1727
VCHO VC2193VC2195VC2191VC2190VC2143
TTUR377629 TERTU_1232TERTU_1230TERTU_1234TERTU_1235TERTU_1237
TTEN273068 TTE0173TTE0494TTE0495TTE0499
TSP28240 TRQ2_1202TRQ2_1205TRQ2_0864TRQ2_0865TRQ2_0168
TSP1755 TETH514_0111TETH514_0451TETH514_0452TETH514_0456
TROS309801 TRD_A0642TRD_A0048TRD_A0049TRD_A0208
TPSE340099 TETH39_2092TETH39_1784TETH39_1783TETH39_1779
TPET390874 TPET_1253TPET_1250TPET_0841TPET_0842TPET_0170
TPAL243276 TP_0960TP_0660TP_0659TP_0792
TMAR243274 TM_1539TM_1542TM_0083TM_0082TM_0758
TLET416591 TLET_0378TLET_0375TLET_0672TLET_0671TLET_0257
TDEN326298 TMDEN_0562TMDEN_1103TMDEN_0566TMDEN_1037
TDEN292415 TBD_1630TBD_1632TBD_1628TBD_1627TBD_1590
TDEN243275 TDE_1007TDE_2352TDE_2353TDE_1004
TCRU317025 TCR_1467TCR_1469TCR_1465TCR_1464TCR_1453
STYP99287 STM1181STM1179STM1183STM1184STM2771
SSP94122 SHEWANA3_1328SHEWANA3_1326SHEWANA3_1330SHEWANA3_1331SHEWANA3_1333
SSON300269 SSO_1100SSO_1096SSO_1102SSO_1103SSO_1193
SSED425104 SSED_3080SSED_3082SSED_3078SSED_3077SSED_3076
SRUB309807 SRU_2640SRU_2643SRU_2637SRU_2636SRU_2630
SPRO399741 SPRO_2963SPRO_2965SPRO_2961SPRO_2960SPRO_2940
SPEA398579 SPEA_1347SPEA_1345SPEA_0066SPEA_1350SPEA_1352
SONE211586 SO_3242SO_3244SO_3239SO_3237
SLOI323850 SHEW_1352SHEW_1350SHEW_1354SHEW_1355SHEW_1356
SHAL458817 SHAL_1434SHAL_1432SHAL_4256SHAL_1437SHAL_1439
SGLO343509 SG0037SG0035SG0039SG0040SG0058
SFLE373384 SFV_1102SFV_1100SFV_1105SFV_1967
SENT454169 SEHA_C1293SEHA_C1291SEHA_C1295SEHA_C1296SEHA_C2947
SENT321314 SCH_1128SCH_1126SCH_1130SCH_1131SCH_1962
SENT295319 SPA1670SPA1672SPA1668SPA1667SPA0911
SENT220341 STY1220STY1218STY1222STY1223STY2165
SENT209261 T1739T1741T1737T1736T0918
SDEN318161 SDEN_1310SDEN_1308SDEN_1312SDEN_1313SDEN_1315
SDEG203122 SDE_2206SDE_2208SDE_2204SDE_2203SDE_2200
SBOY300268 SBO_1984SBO_1986SBO_1982SBO_1981SBO_1083
SBAL402882 SHEW185_2955SHEW185_2957SHEW185_2953SHEW185_2952SHEW185_2948
SBAL399599 SBAL195_3093SBAL195_3095SBAL195_3091SBAL195_3090SBAL195_3084
SALA317655 SALA_2914SALA_2912SALA_2916SALA_2917SALA_2938
SACI56780 SYN_02816SYN_02819SYN_02812SYN_02811SYN_02804
RSPH349102 RSPH17025_1665RSPH17025_1667RSPH17025_1663RSPH17025_1662RSPH17025_1658
RSPH349101 RSPH17029_1712RSPH17029_1714RSPH17029_1710RSPH17029_1705
RSPH272943 RSP_1307RSP_0078RSP_0074RSP_0069
RSOL267608 RSP0349RSP0347RSP0351RSP0352
RPAL316058 RPB_3794RPB_3787RPB_3816RPB_0769
RPAL316056 RPC_1497RPC_1506RPC_2014RPC_0875
RMET266264 RMET_3741RMET_3739RMET_3743RMET_3744RMET_5252
RFER338969 RFER_3721RFER_3719RFER_3723RFER_3724RFER_0631
REUT381666 H16_B0268H16_B0266H16_B0270H16_B0271H16_B2360
REUT264198 REUT_B5632REUT_B5630REUT_B5634REUT_B5635REUT_B5089
PTHE370438 PTH_2080PTH_2112PTH_2111PTH_2102
PSYR223283 PSPTO_1942PSPTO_1940PSPTO_1944PSPTO_1945PSPTO_1949
PSYR205918 PSYR_3473PSYR_3475PSYR_3471PSYR_3470PSYR_3466
PSTU379731 PST_1395PST_1393PST_1397PST_1398PST_1404
PSP117 RB12174RB12180RB10644RB5711RB6996
PPUT76869 PPUTGB1_3944PPUTGB1_3946PPUTGB1_3942PPUTGB1_3941PPUTGB1_3939
PPUT351746 PPUT_1472PPUT_1470PPUT_1474PPUT_1475PPUT_1489
PPUT160488 PP_4383PP_4385PP_4381PP_4380PP_4378
PPRO298386 PBPRA0908PBPRA0906PBPRA0910PBPRA0039PBPRA0913
PMOB403833 PMOB_0330PMOB_0333PMOB_0393PMOB_0392PMOB_1811
PMEN399739 PMEN_2843PMEN_2845PMEN_2841PMEN_2840PMEN_2835
PLUM243265 PLU1922PLU1920PLU1924PLU1925PLU1954
PING357804 PING_3571PING_3573PING_3569PING_3568
PHAL326442 PSHAA0776PSHAA0774PSHAA0778PSHAA0779PSHAA0781
PFLU220664 PFL_1616PFL_1614PFL_1618PFL_1619PFL_1629
PFLU216595 PFLU4453PFLU4455PFLU4451PFLU4450PFLU4448
PFLU205922 PFL_1504PFL_1502PFL_1506PFL_1507PFL_1527
PENT384676 PSEEN3834PSEEN3836PSEEN3832PSEEN3831PSEEN3826
PCAR338963 PCAR_1153PCAR_1156PCAR_1149PCAR_1148PCAR_1115
PATL342610 PATL_3093PATL_3095PATL_3091PATL_3090PATL_3085
PAER208964 PA1084PA1082PA1086PA1087PA1092
PAER208963 PA14_50410PA14_50430PA14_50360PA14_50340PA14_50290
NSP387092 NIS_0613NIS_0610NIS_0645NIS_0644NIS_0640
NSP35761 NOCA_0751NOCA_0769NOCA_0770NOCA_0766
NOCE323261 NOC_2371NOC_2373NOC_2369NOC_2368NOC_2367
NMUL323848 NMUL_A1328NMUL_A1326NMUL_A1330NMUL_A1331NMUL_A1337
NEUT335283 NEUT_0342NEUT_0340NEUT_0344NEUT_0345NEUT_1824
NEUR228410 NE0309NE0307NE0311NE0312NE1593
MTHE264732 MOTH_0779MOTH_0746MOTH_0747MOTH_0760
MSP400668 MMWYL1_3576MMWYL1_3578MMWYL1_3574MMWYL1_3573MMWYL1_3570
MPET420662 MPE_A3066MPE_A3068MPE_A3064MPE_A3063MPE_A2866
MFLA265072 MFLA_1961MFLA_1959MFLA_1963MFLA_1964MFLA_1986
MAQU351348 MAQU_1109MAQU_1107MAQU_1111MAQU_1112MAQU_2592
LSPH444177 BSPH_1559BSPH_1151BSPH_1152BSPH_1035
LPNE400673 LPC_0692LPC_0690LPC_0694LPC_0695LPC_0756
LPNE297246 LPP1231LPP1229LPP1233LPP1234LPP1294
LPNE297245 LPL1231LPL1229LPL1233LPL1234LPL1293
LPNE272624 LPG1223LPG1221LPG1225LPG1226LPG1340
LINT363253 LI0744LI0741LI0747LI0748LI0710
LINT267671 LIC_11327LIC_11324LIC_13451LIC_13450LIC_11890
LINT189518 LA2664LA2667LA4308LA4307LA2017
LCHO395495 LCHO_2727LCHO_2729LCHO_2725LCHO_2724LCHO_1010
LBOR355277 LBJ_1782LBJ_1785LBJ_2967LBJ_2966LBJ_1961
LBOR355276 LBL_1092LBL_1089LBL_0097LBL_0098LBL_1323
LBIF456481 LEPBI_I1535LEPBI_I1532LEPBI_I3213LEPBI_I2133
LBIF355278 LBF_1482LBF_1479LBF_3101LBF_1538
JSP375286 MMA_1425MMA_1423MMA_1427MMA_1428MMA_1450
ILOI283942 IL1140IL1142IL1138IL1137IL1136
HPYL85963 JHP0231JHP1492JHP1047JHP0280JHP0107
HPYL357544 HPAG1_0249HPAG1_1533HPAG1_1057HPAG1_0297HPAG1_0115
HPY HP0246HP1585HP1119HP0295HP0115
HMOD498761 HM1_1117HM1_1205HM1_1206HM1_1250
HHEP235279 HH_0142HH_1081HH_0876HH_1695HH_1653
HHAL349124 HHAL_0513HHAL_0515HHAL_0511HHAL_0510HHAL_0506
HCHE349521 HCH_04475HCH_04477HCH_04473HCH_04472HCH_04822
HARS204773 HEAR1893HEAR1896HEAR1891HEAR1890HEAR1866
HACI382638 HAC_1371HAC_0252HAC_0597HAC_0555HAC_1474
GURA351605 GURA_4103GURA_4106GURA_4099GURA_4098GURA_4095
GTHE420246 GTNG_1080GTNG_3062GTNG_3061GTNG_3067
GSUL243231 GSU_3047GSU_3051GSU_3043GSU_3042GSU_3038
GMET269799 GMET_0434GMET_0431GMET_0438GMET_0439GMET_0442
GKAU235909 GK1227GK3137GK3136GK3131
FNOD381764 FNOD_0843FNOD_0922FNOD_1651FNOD_1650FNOD_1476
ESP42895 ENT638_1594ENT638_1592ENT638_1596ENT638_1597ENT638_2522
EFER585054 EFER_1848EFER_1850EFER_1846EFER_1845EFER_1170
ECOO157 FLGIFLGGFLGKFLGLFLIC
ECOL83334 ECS1458ECS1456ECS1460ECS1461ECS2662
ECOL585397 ECED1_1224ECED1_1222ECED1_1226ECED1_1227ECED1_2188
ECOL585057 ECIAI39_2085ECIAI39_2080ECIAI39_2079ECIAI39_1132
ECOL585056 ECUMN_1254ECUMN_1252ECUMN_1256ECUMN_1257ECUMN_2215
ECOL585055 EC55989_1193EC55989_1191EC55989_1195EC55989_1196EC55989_2144
ECOL585035 ECS88_1094ECS88_1092ECS88_1096ECS88_1097ECS88_1977
ECOL585034 ECIAI1_1116ECIAI1_1114ECIAI1_1118ECIAI1_1119ECIAI1_2009
ECOL481805 ECOLC_2520ECOLC_2522ECOLC_2518ECOLC_2517ECOLC_1716
ECOL469008 ECBD_2520ECBD_2522ECBD_2518ECBD_2517ECBD_1719
ECOL439855 ECSMS35_2048ECSMS35_2050ECSMS35_2046ECSMS35_2045ECSMS35_1258
ECOL413997 ECB_01076ECB_01074ECB_01078ECB_01079
ECOL409438 ECSE_1143ECSE_1141ECSE_1145ECSE_1146ECSE_2154
ECOL405955 APECO1_162APECO1_160APECO1_164APECO1_165APECO1_964
ECOL364106 UTI89_C1205UTI89_C1203UTI89_C1207UTI89_C1208UTI89_C2124
ECOL362663 ECP_1072ECP_1070ECP_1074ECP_1075ECP_1857
ECOL331111 ECE24377A_1203ECE24377A_1201ECE24377A_1205ECE24377A_1206ECE24377A_2158
ECOL316407 ECK1065:JW1067:B1080ECK1063:JW1065:B1078ECK1067:JW1069:B1082ECK1068:JW1070:B1083ECK1922:JW1908:B1923
ECOL199310 C1349C1347C1351C1352C2338
ECAR218491 ECA1709ECA1707ECA1711ECA1712ECA1731
DVUL882 DVU_0516DVU_0513DVU_0519DVU_0520
DRED349161 DRED_2400DRED_2436DRED_2435DRED_2433
DPSY177439 DP2684DP2681DP2689DP1661DP2693
DDES207559 DDE_3155DDE_3158DDE_3152DDE_3151DDE_1501
DARO159087 DARO_0756DARO_0754DARO_0758DARO_0759DARO_0784
CVIO243365 CV_2881CV_2883CV_2879CV_2878CV_3879
CTET212717 CTC_01667CTC_01724CTC_01722CTC_01715
CSAL290398 CSAL_1971CSAL_1973CSAL_1969CSAL_1968CSAL_1985
CPSY167879 CPS_1484CPS_1482CPS_1486CPS_1487CPS_1488
CPHY357809 CPHY_0244CPHY_0305CPHY_0307CPHY_3850
CNOV386415 NT01CX_1927NT01CX_1872NT01CX_1873NT01CX_1881
CJEJ407148 C8J_1368C8J_0665C8J_1372C8J_0824C8J_1256
CJEJ360109 JJD26997_1810JJD26997_1308JJD26997_1814JJD26997_1031JJD26997_0372
CJEJ354242 CJJ81176_1455CJJ81176_0721CJJ81176_1459CJJ81176_0894CJJ81176_1339
CJEJ195099 CJE_1636CJE_0797CJE_1640CJE_0966CJE_1528
CJEJ192222 CJ1462CJ0698CJ1466CJ0887CCJ1339C
CJAP155077 CJA_1924CJA_1926CJA_1922CJA_1921CJA_1917
CHYD246194 CHY_1001CHY_0971CHY_0972CHY_0981
CFET360106 CFF8240_0096CFF8240_0523CFF8240_0100CFF8240_0683CFF8240_1635
CDIF272563 CD0255CD0231CD0232CD0239
CDES477974 DAUD_1757DAUD_1788DAUD_1787DAUD_1781
CCUR360105 CCV52592_0782CCV52592_0104CCV52592_0786CCV52592_1295CCV52592_0568
CCON360104 CCC13826_1031CCC13826_2184CCC13826_0708CCC13826_1300CCC13826_2297
CBOT536232 CLM_3003CLM_3106CLM_3105CLM_3060
CBOT515621 CLJ_B2869CLJ_B2967CLJ_B2966CLJ_B2958
CBOT498213 CLD_1926CLD_1834CLD_1835CLD_0531
CBOT441772 CLI_2704CLI_2790CLI_2789CLI_2760
CBOT441771 CLC_2512CLC_2614CLC_2613CLC_0300
CBOT441770 CLB_2581CLB_2681CLB_2680CLB_0285
CBOT36826 CBO2637CBO2740CBO2739CBO0242
CACE272562 CAC2139CAC2212CAC2211CAC2203
BVIE269482 BCEP1808_3103BCEP1808_3105BCEP1808_3100BCEP1808_3099BCEP1808_0199
BTHA271848 BTH_I0247BTH_I0245BTH_I0250BTH_I0251BTH_I3196
BSUB BSU16290BSU35410BSU35400BSU35360
BSP36773 BCEP18194_A6364BCEP18194_A6366BCEP18194_A6361BCEP18194_A6360BCEP18194_A3343
BPUM315750 BPUM_1527BPUM_3190BPUM_3189BPUM_0150
BPSE320373 BURPS668_0273BURPS668_0271BURPS668_0276BURPS668_0277BURPS668_3870
BPSE320372 BURPS1710B_A0489BURPS1710B_A0487BURPS1710B_A0492BURPS1710B_A0493BURPS1710B_A0097
BPSE272560 BPSL0277BPSL0275BPSL0280BPSL0281BPSL3319
BPET94624 BPET2128BPET2126BPET2130BPET2131BPET2095
BPER257313 BP1380BP1378BP1382BP1383BP0996
BPAR257311 BPP1492BPP1494BPP1495BPP1465
BMAL320389 BMA10247_3347BMA10247_3349BMA10247_3344BMA10247_3343BMA10247_3102
BMAL320388 BMASAVP1_A3001BMASAVP1_A2999BMASAVP1_A3004BMASAVP1_A3005BMASAVP1_A3448
BMAL243160 BMA_3332BMA_3330BMA_3335BMA_3336BMA_2873
BLIC279010 BL01264BL03369BL03370BL03374
BJAP224911 BLR5838BLR5828BLL5853BLR3704
BHAL272558 BH2449BH3621BH3620BH3616
BGAR290434 BG0798BG0180BG0147BG0147
BCLA66692 ABC2261ABC3079ABC3078ABC3699
BCER315749 BCER98_1366BCER98_1351BCER98_1352BCER98_1375
BCEN331272 BCEN2424_3018BCEN2424_3020BCEN2424_3015BCEN2424_3014BCEN2424_0241
BCEN331271 BCEN_2404BCEN_2406BCEN_2401BCEN_2400BCEN_2866
BBUR224326 BB_0774BB_0181BB_0147BB_0147
BBRO257310 BB2566BB2564BB2568BB2569BB2539
BBAC264462 BD0535BD0531BD0540BD0542BD0408
BAMY326423 RBAM_016120RBAM_032560RBAM_032550RBAM_032510
BAMB398577 BAMMC406_2928BAMMC406_2930BAMMC406_2925BAMMC406_2924BAMMC406_0169
BAMB339670 BAMB_3063BAMB_3065BAMB_3060BAMB_3059BAMB_0156
BAFZ390236 BAPKO_0823BAPKO_0183BAPKO_0149BAPKO_0149
ASP62928 AZO2733AZO2735AZO2731AZO2730AZO2704
ASP232721 AJS_3835AJS_3832AJS_3837AJS_3812
ASAL382245 ASA_1496ASA_1494ASA_0372ASA_0373ASA_2662
AORE350688 CLOS_2549CLOS_2521CLOS_2520CLOS_2518
AMET293826 AMET_0370AMET_0727AMET_0728AMET_0732
AHYD196024 AHA_2835AHA_2837AHA_2833AHA_2832AHA_1699
AEHR187272 MLG_0900MLG_0898MLG_0902MLG_0903MLG_0698
ADEH290397 ADEH_1348ADEH_1351ADEH_1344ADEH_1343ADEH_1339
ABUT367737 ABU_0201ABU_1968ABU_0209ABU_2255
ABAU360910 BAV1695BAV1693BAV1697BAV1698BAV1668
ABAC204669 ACID345_2926ACID345_2923ACID345_2930ACID345_2931ACID345_2935
AAVE397945 AAVE_4428AAVE_4425AAVE_4430AAVE_4431AAVE_4400
AAEO224324 AQ_1713AQ_834AQ_1662AQ_1663AQ_1998


Organism features enriched in list (features available for 220 out of the 232 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Botulism 0.007436455
Disease:Bubonic_plague 0.002766166
Disease:Gastroenteritis 0.00005691213
Endospores:No 0.000077859211
GC_Content_Range4:0-40 2.248e-850213
GC_Content_Range4:40-60 0.0000153108224
GC_Content_Range7:30-40 3.527e-737166
GC_Content_Range7:50-60 0.000124357107
GC_Content_Range7:60-70 0.008740461134
Genome_Size_Range5:0-2 1.064e-1322155
Genome_Size_Range5:2-4 0.000504957197
Genome_Size_Range5:4-6 2.963e-18117184
Genome_Size_Range9:0-1 0.0000335127
Genome_Size_Range9:1-2 2.762e-921128
Genome_Size_Range9:2-3 1.886e-624120
Genome_Size_Range9:4-5 5.284e-116596
Genome_Size_Range9:5-6 5.644e-65288
Genome_Size_Range9:6-8 0.00458702238
Gram_Stain:Gram_Neg 1.110e-17174333
Gram_Stain:Gram_Pos 3.546e-1026150
Habitat:Host-associated 0.000781361206
Habitat:Multiple 0.001745882178
Motility:No 2.723e-2112151
Motility:Yes 1.186e-37174267
Optimal_temp.:- 0.0024603112257
Optimal_temp.:28-30 0.001025977
Optimal_temp.:37 0.007442930106
Oxygen_Req:Microaerophilic 0.00007001518
Pathogenic_in:No 0.006862773226
Shape:Coccus 5.228e-16282
Shape:Rod 3.356e-10166347
Shape:Sphere 0.0070810219
Shape:Spiral 5.213e-92934



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 316
Effective number of orgs (counting one per cluster within 468 clusters): 246

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TPEN368408 ncbi Thermofilum pendens Hrk 50
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23380
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SCO ncbi Streptomyces coelicolor A3(2)0
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2050
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP357808 ncbi Roseiflexus sp. RS-10
RSP101510 ncbi Rhodococcus jostii RHA10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP296591 ncbi Polaromonas sp. JS6660
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PNAP365044 ncbi Polaromonas naphthalenivorans CJ20
PMUL272843 ncbi Pasteurella multocida multocida Pm700
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
MXAN246197 ncbi Myxococcus xanthus DK 16220
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E0
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1550
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785780
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HSAL478009 ncbi Halobacterium salinarum R10
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HINF71421 ncbi Haemophilus influenzae Rd KW200
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRAD243230 ncbi Deinococcus radiodurans R10
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BQUI283165 ncbi Bartonella quintana Toulouse0
BLON206672 ncbi Bifidobacterium longum NCC27050
BHEN283166 ncbi Bartonella henselae Houston-10
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN11
ASP62977 ncbi Acinetobacter sp. ADP10
ASP1667 Arthrobacter sp.0
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL030
APLE416269 ncbi Actinobacillus pleuropneumoniae L200
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
ABOR393595 ncbi Alcanivorax borkumensis SK20
AAUR290340 ncbi Arthrobacter aurescens TC10


Names of the homologs of the genes in the group in each of these orgs
  G365   G363   EG11967   EG11545   EG10321   
XFAS405440
XFAS183190
XFAS160492
XAUT78245
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852
TTHE262724
TPEN368408
TKOD69014
TFUS269800
TERY203124
TELO197221
TACI273075
STRO369723
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP387093
SSP321332
SSP321327
SSP1148
SSP1131
SSOL273057
SSAP342451
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SHAE279808
SGOR29390
SFUM335543
SERY405948
SEPI176280
SEPI176279
SELO269084
SCO
SAVE227882
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037
SAGA211110
SAGA208435
SAGA205921
SACI330779
RXYL266117
RTYP257363
RSP357808
RSP101510
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFEL315456
RCON272944
RCAS383372
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PSP56811
PSP312153
PSP296591
PRUM264731
PPEN278197
PNAP365044
PMUL272843
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PHOR70601
PGIN242619
PFUR186497
PDIS435591
PCRY335284
PAST100379
PARS340102
PARC259536
PAER178306
PACN267747
PABY272844
OTSU357244
NSP103690
NSEN222891
NPHA348780
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NGON242231
NFAR247156
MXAN246197
MVAN350058
MTUB419947
MTUB336982
MTHE349307
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSUC221988
MSTA339860
MSP189918
MSP164757
MSP164756
MSME246196
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MCAP340047
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAER449447
MAEO419665
MACE188937
MABS561007
LSAK314315
LREU557436
LPLA220668
LMES203120
LLAC272623
LLAC272622
LJOH257314
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967 LSEI_0060
LBRE387344
LACI272621
KPNE272620
IHOS453591
HWAL362976
HSP64091
HSOM228400
HSOM205914
HSAL478009
HMUK485914
HMAR272569
HINF71421
HINF374930
HINF281310
HDUC233412
HBUT415426
HAUR316274
GVIO251221
GFOR411154
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855
FSP106370
FRANT
FPHI484022
FNUC190304
FMAG334413
FJOH376686
FALN326424
ERUM302409
ERUM254945
ELIT314225
EFAE226185
ECHA205920
ECAN269484
DSP255470
DSP216389
DRAD243230
DOLE96561
DNOD246195
DGEO319795
DETH243164
CVES412965
CTRA471473
CTRA471472
CTEP194439
CSUL444179
CRUT413404
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPER289380
CPER195103
CPER195102
CPEL335992
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CJEI306537
CHUT269798
CHOM360107
CGLU196627
CFEL264202
CEFF196164
CDIP257309
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBLO291272
CBLO203907
CABO218497
BXEN266265
BTRI382640
BTHE226186
BQUI283165
BLON206672
BHEN283166
BFRA295405
BFRA272559
BCIC186490
BAPH372461 BCC_213
AYEL322098
AVAR240292
AURANTIMONAS
ASP76114 EBA4527
ASP62977
ASP1667
APLE434271
APLE416269
APHA212042
APER272557
ANAE240017
AMAR329726
AMAR234826
ALAI441768
AFUL224325
AFER243159
ABOR393595
AAUR290340


Organism features enriched in list (features available for 297 out of the 316 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.002175699
Arrangment:Clusters 0.00014401617
Arrangment:Filaments 0.00109161010
Arrangment:Singles 0.0072482133286
Disease:Pharyngitis 0.004328788
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00054681111
Disease:Wide_range_of_infections 0.00054681111
Disease:bronchitis_and_pneumonitis 0.004328788
Disease:gastroenteritis 0.0011650113
Endospores:No 8.889e-9140211
Endospores:Yes 1.867e-61153
GC_Content_Range4:0-40 2.546e-8140213
GC_Content_Range4:40-60 0.0081203102224
GC_Content_Range4:60-100 0.000053454145
GC_Content_Range7:30-40 1.961e-7112166
GC_Content_Range7:50-60 0.000162838107
GC_Content_Range7:60-70 2.015e-645134
Genome_Size_Range5:0-2 2.393e-21128155
Genome_Size_Range5:2-4 0.0005879118197
Genome_Size_Range5:4-6 1.032e-2833184
Genome_Size_Range9:0-1 0.00066142227
Genome_Size_Range9:1-2 3.122e-17106128
Genome_Size_Range9:2-3 4.251e-989120
Genome_Size_Range9:3-4 0.00428742977
Genome_Size_Range9:4-5 5.953e-161496
Genome_Size_Range9:5-6 8.065e-101988
Genome_Size_Range9:6-8 0.00257521138
Gram_Stain:Gram_Neg 1.718e-18118333
Gram_Stain:Gram_Pos 1.943e-7103150
Habitat:Host-associated 0.0000454127206
Habitat:Multiple 0.000017168178
Habitat:Terrestrial 0.0022719831
Motility:No 8.478e-31135151
Motility:Yes 3.150e-4950267
Optimal_temp.:- 0.0007624113257
Optimal_temp.:30-35 0.008597777
Optimal_temp.:30-37 0.00350401518
Optimal_temp.:37 0.001721067106
Oxygen_Req:Microaerophilic 0.0000406118
Shape:Coccus 2.682e-187682
Shape:Irregular_coccus 8.320e-61717
Shape:Rod 1.072e-15130347
Shape:Sphere 0.00036261719



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 6
Effective number of orgs (counting one per cluster within 468 clusters): 4

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
HACI382638 ncbi Helicobacter acinonychis Sheeba 0.00562505075
HPYL357544 ncbi Helicobacter pylori HPAG1 0.00644925215
HPY ncbi Helicobacter pylori 26695 0.00644925215
HPYL85963 ncbi Helicobacter pylori J99 0.00676595265
BGAR290434 ncbi Borrelia garinii PBi 0.00913552244
BAFZ390236 ncbi Borrelia afzelii PKo 0.00997792294


Names of the homologs of the genes in the group in each of these orgs
  G365   G363   EG11967   EG11545   EG10321   
HACI382638 HAC_1371HAC_0252HAC_0597HAC_0555HAC_1474
HPYL357544 HPAG1_0249HPAG1_1533HPAG1_1057HPAG1_0297HPAG1_0115
HPY HP0246HP1585HP1119HP0295HP0115
HPYL85963 JHP0231JHP1492JHP1047JHP0280JHP0107
BGAR290434 BG0798BG0180BG0147BG0147
BAFZ390236 BAPKO_0823BAPKO_0183BAPKO_0149BAPKO_0149


Organism features enriched in list (features available for 6 out of the 6 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Gastric_inflammation_and_peptic_ulcer_disease 0.000088422
GC_Content_Range4:0-40 0.00227316213
Genome_Size_Range5:0-2 0.00032866155
Genome_Size_Range9:1-2 0.00226505128
Habitat:Host-associated 0.00185566206
Motility:Yes 0.00894746267
Shape:Spiral 2.531e-8634



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
AST-PWY (arginine degradation II (AST pathway))1201080.5331
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181540.5069
GLYCOCAT-PWY (glycogen degradation I)2461580.4510
PWY0-901 (selenocysteine biosynthesis I (bacteria))2301510.4496
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951350.4467
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761240.4311
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911290.4168
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251420.4024



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G363   EG11967   EG11545   EG10321   
G3650.9998940.9998590.999730.999311
G3630.9997690.9996910.999323
EG119670.9999420.999574
EG115450.999622
EG10321



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PAIRWISE BLAST SCORES:

  G365   G363   EG11967   EG11545   EG10321   
G3650.0f0----
G363-0.0f0---
EG11967--0.0f0--
EG11545---0.0f0-
EG10321----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- FLAGELLAR-MOTOR-COMPLEX (Flagellar Motor Complex) (degree of match pw to cand: 0.154, degree of match cand to pw: 0.400, average score: 0.999)
  Genes in pathway or complex:
             0.9992 0.9991 EG11346 (fliE) EG11346-MONOMER (flagellar basal-body protein FliE)
             0.9993 0.9992 EG11347 (fliF) FLIF-FLAGELLAR-MS-RING (flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein)
   *in cand* 0.9998 0.9993 G365 (flgI) FLGI-FLAGELLAR-P-RING (flagellar P-ring protein FlgI)
   *in cand* 0.9997 0.9993 G363 (flgG) FLGG-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgG)
             0.9997 0.9992 G362 (flgF) FLGF-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgF)
             0.9996 0.9992 G359 (flgC) FLGC-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgC)
             0.9995 0.9991 G358 (flgB) FLGB-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgB)
             0.9983 0.9977 EG10602 (motB) MOTB-FLAGELLAR-MOTOR-STATOR-PROTEIN (MotB protein, enables flagellar motor rotation, linking torque machinery to cell wall)
             0.9984 0.9979 EG10601 (motA) MOTA-FLAGELLAR-MOTOR-STATOR-PROTEIN (MotA protein, proton conductor component of motor; no effect on switching)
             0.9997 0.9993 G364 (flgH) FLGH-FLAGELLAR-L-RING (flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein)
             0.9993 0.9991 EG11654 (fliG) FLIG-FLAGELLAR-SWITCH-PROTEIN (flagellar motor switch protein FliG)
             0.9993 0.9992 EG10323 (fliM) FLIM-FLAGELLAR-C-RING-SWITCH (flagellar motor switch protein FliM)
             0.9993 0.9991 EG10324 (fliN) FLIN-FLAGELLAR-C-RING-SWITCH (flagellar motor switch protein FliN)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9993 EG10321 (fliC) EG10321-MONOMER (flagellar biosynthesis; flagellin, filament structural protein)
   *in cand* 0.9998 0.9996 EG11545 (flgL) EG11545-MONOMER (flagellar biosynthesis; hook-filament junction protein)
   *in cand* 0.9998 0.9996 EG11967 (flgK) EG11967-MONOMER (flagellar biosynthesis, hook-filament junction protein 1)

- CPLX0-7452 (Flagellum) (degree of match pw to cand: 0.185, degree of match cand to pw: 1.000, average score: 0.998)
  Genes in pathway or complex:
             0.9995 0.9992 EG10841 (fliD) EG10841-MONOMER (flagellar cap protein FliD; filament capping protein; enables filament assembly)
   *in cand* 0.9996 0.9993 EG10321 (fliC) EG10321-MONOMER (flagellar biosynthesis; flagellin, filament structural protein)
   *in cand* 0.9998 0.9996 EG11545 (flgL) EG11545-MONOMER (flagellar biosynthesis; hook-filament junction protein)
   *in cand* 0.9998 0.9996 EG11967 (flgK) EG11967-MONOMER (flagellar biosynthesis, hook-filament junction protein 1)
             0.9995 0.9989 G361 (flgE) G361-MONOMER (flagellar hook protein FlgE)
             0.9992 0.9991 G370 (flhA) G370-MONOMER (flagellar biosynthesis protein FlhA)
             0.9993 0.9990 G7028 (flhB) G7028-MONOMER (flagellar biosynthesis protein FlhB)
             0.9761 0.9675 EG11224 (fliO) EG11224-MONOMER (flagellar biosynthesis protein FliO)
             0.9994 0.9992 EG11975 (fliP) EG11975-MONOMER (flagellar biosynthesis protein FliP)
             0.9989 0.9988 EG11976 (fliQ) EG11976-MONOMER (flagellar biosynthesis protein FliQ)
             0.9993 0.9992 EG11977 (fliR) EG11977-MONOMER (flagellar biosynthesis protein FliR)
             0.9990 0.9989 EG11656 (fliH) EG11656-MONOMER (flagellar biosynthesis protein FliH)
             0.9993 0.9991 G377 (fliI) G377-MONOMER (flagellum-specific ATP synthase FliI)
             0.9990 0.9989 G378 (fliJ) G378-MONOMER (flagellar biosynthesis protein FliJ)
             0.9993 0.9991 EG10324 (fliN) FLIN-FLAGELLAR-C-RING-SWITCH (flagellar motor switch protein FliN)
             0.9993 0.9992 EG10323 (fliM) FLIM-FLAGELLAR-C-RING-SWITCH (flagellar motor switch protein FliM)
             0.9993 0.9991 EG11654 (fliG) FLIG-FLAGELLAR-SWITCH-PROTEIN (flagellar motor switch protein FliG)
             0.9997 0.9993 G364 (flgH) FLGH-FLAGELLAR-L-RING (flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein)
             0.9984 0.9979 EG10601 (motA) MOTA-FLAGELLAR-MOTOR-STATOR-PROTEIN (MotA protein, proton conductor component of motor; no effect on switching)
             0.9983 0.9977 EG10602 (motB) MOTB-FLAGELLAR-MOTOR-STATOR-PROTEIN (MotB protein, enables flagellar motor rotation, linking torque machinery to cell wall)
             0.9995 0.9991 G358 (flgB) FLGB-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgB)
             0.9996 0.9992 G359 (flgC) FLGC-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgC)
             0.9997 0.9992 G362 (flgF) FLGF-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgF)
   *in cand* 0.9997 0.9993 G363 (flgG) FLGG-FLAGELLAR-MOTOR-ROD-PROTEIN (flagellar basal-body rod protein FlgG)
   *in cand* 0.9998 0.9993 G365 (flgI) FLGI-FLAGELLAR-P-RING (flagellar P-ring protein FlgI)
             0.9993 0.9992 EG11347 (fliF) FLIF-FLAGELLAR-MS-RING (flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein)
             0.9992 0.9991 EG11346 (fliE) EG11346-MONOMER (flagellar basal-body protein FliE)
  All candidate genes found in this pathway



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11545 EG11967 (centered at EG11545)
EG10321 (centered at EG10321)
G363 (centered at G363)
G365 (centered at G365)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G365   G363   EG11967   EG11545   EG10321   
236/623283/623299/623251/623248/623
AAEO224324:0:Tyes6230586587829
AAVE397945:0:Tyes282530310
ABAC204669:0:Tyes307812
ABAU360910:0:Tyes272529300
ABUT367737:0:Tyes017618-2047
ACAU438753:0:Tyes0216--
ACEL351607:0:Tyes-1810-
ACRY349163:8:Tyes652-0--
ADEH290397:0:Tyes912540
AEHR187272:0:Tyes2022002042050
AHYD196024:0:Tyes11051107110311020
AMET293826:0:Tyes-0352353357
AORE350688:0:Tyes-31320
ASAL382245:5:Tyes10821080012205
ASP232721:2:Tyes232025-0
ASP62928:0:Tyes293127260
ASP76114:2:Tyes----0
BABO262698:0:Tno-0866--
BAFZ390236:2:Fyes-6673300
BAMB339670:3:Tno29822984297929780
BAMB398577:3:Tno28002802279727960
BAMY326423:0:Tyes-0164316421638
BANT260799:0:Tno--0131
BANT261594:2:Tno--02828
BANT568206:2:Tyes--38360
BANT592021:2:Tno--0138
BAPH198804:0:Tyes204--
BAPH372461:0:Tyes0----
BBAC264462:0:Tyes1151121191200
BBAC360095:0:Tyes17190--
BBRO257310:0:Tyes272529300
BBUR224326:21:Fno-6183400
BCAN483179:0:Tno20962--
BCEN331271:2:Tno4610476
BCEN331272:3:Tyes27712773276827670
BCER226900:1:Tyes--01919
BCER288681:0:Tno--0120
BCER315749:1:Tyes-150124
BCER405917:1:Tyes--0120
BCER572264:1:Tno--0121
BCLA66692:0:Tyes-08308291449
BGAR290434:2:Fyes-6503300
BHAL272558:0:Tyes-0118711861182
BHER314723:0:Fyes-63630-0
BJAP224911:0:Fyes2155214521700-
BLIC279010:0:Tyes-0186818671863
BMAL243160:1:Tno4224204254260
BMAL320388:1:Tno2056434
BMAL320389:1:Tyes2432452402390
BMEL224914:0:Tno9429440--
BMEL359391:0:Tno-0851--
BOVI236:0:Tyes-0767--
BPAR257311:0:Tno23-25260
BPER257313:0:Tyes3433413453460
BPET94624:0:Tyes312933340
BPSE272560:1:Tyes20563062
BPSE320372:1:Tno3883863913920
BPSE320373:1:Tno20563469
BPUM315750:0:Tyes-1408307230710
BSP107806:2:Tyes204--
BSP36773:2:Tyes30763078307330720
BSP376:0:Tyes11025--
BSUB:0:Tyes-0200220011997
BSUI204722:0:Tyes20936--
BSUI470137:0:Tno201138--
BTHA271848:1:Tno20562889
BTHU281309:1:Tno--02020
BTHU412694:1:Tno--0120
BTUR314724:0:Fyes-63330-0
BVIE269482:7:Tyes28782880287528740
BWEI315730:4:Tyes--0125
CACE272562:1:Tyes-0727163
CAULO:0:Tyes171411860--
CBEI290402:0:Tyes--9-0
CBOT36826:1:Tno-2370247324720
CBOT441770:0:Tyes-2247234723460
CBOT441771:0:Tno-2165226722660
CBOT441772:1:Tno-0818055
CBOT498213:1:Tno-2380247224710
CBOT508765:1:Tyes-39-011
CBOT515621:2:Tyes-0989789
CBOT536232:0:Tno-010210157
CCON360104:2:Tyes0410484979
CCUR360105:0:Tyes314031095946
CDES477974:0:Tyes-0313024
CDIF272563:1:Tyes-24018
CFET360106:0:Tyes041645621499
CHYD246194:0:Tyes-300110
CJAP155077:0:Tyes79540
CJEJ192222:0:Tyes7520756175633
CJEJ195099:0:Tno8150819162711
CJEJ354242:2:Tyes7110715168599
CJEJ360109:0:Tyes134987913536240
CJEJ407148:0:Tno7220726164610
CKLU431943:1:Tyes--965-0
CNOV386415:0:Tyes-55019
CPHY357809:0:Tyes-061633575
CPSY167879:0:Tyes20456
CSAL290398:0:Tyes351017
CSP501479:7:Fyes2120--
CSP78:2:Tyes27114290--
CTET212717:0:Tyes-0535246
CVIO243365:0:Tyes35101038
DARO159087:0:Tyes204530
DDES207559:0:Tyes16861689168316820
DHAF138119:0:Tyes--650
DPSY177439:2:Tyes10481045105301057
DRED349161:0:Tyes-0363533
DSHI398580:5:Tyes1250127--
DVUL882:1:Tyes3067-
ECAR218491:0:Tyes204523
ECOL199310:0:Tno2045972
ECOL316407:0:Tno2045863
ECOL331111:6:Tno2045925
ECOL362663:0:Tno2045782
ECOL364106:1:Tno2045920
ECOL405955:2:Tyes2045812
ECOL409438:6:Tyes20451021
ECOL413997:0:Tno2045-
ECOL439855:4:Tno7817837797780
ECOL469008:0:Tno7797817777760
ECOL481805:0:Tno7988007967950
ECOL585034:0:Tno2045877
ECOL585035:0:Tno2045849
ECOL585055:0:Tno2045950
ECOL585056:2:Tno2045957
ECOL585057:0:Tno-9369339320
ECOL585397:0:Tno2045912
ECOL83334:0:Tno20451226
ECOLI:0:Tno2045885
ECOO157:0:Tno20451196
EFER585054:1:Tyes6696716676660
ESP42895:1:Tyes2045927
FNOD381764:0:Tyes086824823653
GKAU235909:1:Tyes-0194819471942
GMET269799:1:Tyes307811
GOXY290633:5:Tyes0332405--
GSUL243231:0:Tyes912540
GTHE420246:1:Tyes-0195119501956
GURA351605:0:Tyes811430
HACI382638:1:Tyes103403272911126
HARS204773:0:Tyes252723220
HCHE349521:0:Tyes3510349
HHAL349124:0:Tyes79540
HHEP235279:0:Tyes097175415891547
HMOD498761:0:Tyes-13143420
HNEP81032:0:Tyes092--
HPY:0:Tno130148510121800
HPYL357544:1:Tyes13514479621840
HPYL85963:0:Tno12213719301710
ILOI283942:0:Tyes46210
JSP290400:1:Tyes2190--
JSP375286:0:Tyes204527
KRAD266940:2:Fyes--01-
LBIF355278:2:Tyes301594-58
LBIF456481:2:Tno301658-606
LBOR355276:1:Tyes905902011113
LBOR355277:1:Tno0310591058160
LCAS321967:1:Tyes--0--
LCHO395495:0:Tyes17441746174217410
LINN272626:1:Tno--01-
LINT189518:1:Tyes653656231223110
LINT267671:1:Tno3020862085555
LINT363253:3:Tyes343137380
LMON169963:0:Tno--01-
LMON265669:0:Tyes--01-
LPNE272624:0:Tno2045119
LPNE297245:1:Fno204565
LPNE297246:1:Fyes204567
LPNE400673:0:Tno204566
LSPH444177:1:Tyes-5101141150
LWEL386043:0:Tyes--01-
LXYL281090:0:Tyes-15-03
MAQU351348:2:Tyes20451468
MEXT419610:0:Tyes210721130--
MFLA265072:0:Tyes204527
MLOT266835:2:Tyes20---
MMAG342108:0:Tyes3290332--
MMAR394221:0:Tyes126012550--
MPET420662:1:Tyes1992011971960
MSP266779:3:Tyes15170--
MSP400668:0:Tyes68430
MSP409:2:Tyes5120--
MTHE264732:0:Tyes-330114
NARO279238:0:Tyes---00
NEUR228410:0:Tyes20451307
NEUT335283:2:Tyes20451467
NHAM323097:2:Tyes12490--
NMUL323848:3:Tyes204511
NOCE323261:1:Tyes46210
NSP35761:1:Tyes-0181915
NSP387092:0:Tyes30353430
NWIN323098:0:Tyes11210--
OANT439375:4:Tyes15170--
OCAR504832:0:Tyes10160--
OIHE221109:0:Tyes--10221
PAER208963:0:Tyes810650
PAER208964:0:Tno204510
PATL342610:0:Tyes810650
PCAR338963:0:Tyes384134330
PENT384676:0:Tyes810650
PFLU205922:0:Tyes204525
PFLU216595:1:Tyes57320
PFLU220664:0:Tyes204515
PHAL326442:1:Tyes20456
PING357804:0:Tyes3510-
PLUM243265:0:Fyes204534
PMEN399739:0:Tyes810650
PMOB403833:0:Tyes0366651466
PPRO298386:2:Tyes8698678710874
PPUT160488:0:Tno57320
PPUT351746:0:Tyes204519
PPUT76869:0:Tno57320
PSP117:0:Tyes3555355827030729
PSTU379731:0:Tyes204511
PSYR205918:0:Tyes79540
PSYR223283:2:Tyes20459
PTHE370438:0:Tyes-0323122
RDEN375451:4:Tyes2970299--
RETL347834:5:Tyes2019--
REUT264198:2:Tyes5425405445450
REUT381666:1:Tyes20452075
RFER338969:1:Tyes30903088309230930
RLEG216596:5:Tyes--0--
RLEG216596:6:Tyes20---
RMET266264:1:Tyes20451500
RPAL258594:0:Tyes9031--
RPAL316055:0:Tyes27330--
RPAL316056:0:Tyes61962811340-
RPAL316057:0:Tyes8140--
RPAL316058:0:Tyes3040303330620-
RPOM246200:1:Tyes18016--
RRUB269796:1:Tyes3173110--
RSOL267608:0:Tyes2045-
RSPH272943:4:Tyes126295-0
RSPH349101:2:Tno795-0
RSPH349102:5:Tyes79540
SACI56780:0:Tyes307815
SALA317655:1:Tyes204526
SBAL399599:3:Tyes79540
SBAL402882:1:Tno68430
SBOY300268:1:Tyes8588608578560
SDEG203122:0:Tyes68430
SDEN318161:0:Tyes20457
SDYS300267:1:Tyes24-0-
SENT209261:0:Tno7747767727710
SENT220341:0:Tno2045851
SENT295319:0:Tno7237257217200
SENT321314:2:Tno2045845
SENT454169:2:Tno20451594
SFLE198214:0:Tyes20--823
SFLE373384:0:Tno20-4817
SGLO343509:3:Tyes204523
SHAL458817:0:Tyes20291657
SHIGELLA:0:Tno20--764
SLAC55218:1:Fyes1109--
SLOI323850:0:Tyes20456
SMED366394:3:Tyes2019--
SMEL266834:2:Tyes2018--
SONE211586:1:Tyes46-20
SPEA398579:0:Tno13311329013341336
SPRO399741:1:Tyes232521200
SRUB309807:1:Tyes1013760
SSED425104:0:Tyes46210
SSON300269:1:Tyes305692
SSP292414:2:Tyes2200--
SSP644076:6:Fyes2190--
SSP94122:1:Tyes20457
STHE292459:0:Tyes--10-
STYP99287:1:Tyes20451580
SWOL335541:0:Tyes-71801-
TCRU317025:0:Tyes141612110
TDEN243275:0:Tyes-3133913400
TDEN292415:0:Tyes404238370
TDEN326298:0:Tyes05574489-
TLET416591:0:Tyes1211184204190
TMAR243274:0:Tyes1422142510661
TPAL243276:0:Tyes-29910133
TPET390874:0:Tno110611036886890
TPSE340099:0:Tyes-299540
TROS309801:0:Tyes-59401160
TSP1755:0:Tyes-0328329333
TSP28240:0:Tyes104810517137140
TTEN273068:0:Tyes-0303304308
TTUR377629:0:Tyes20456
VCHO:0:Tyes666864630
VCHO345073:1:Tno444642410
VEIS391735:1:Tyes35103810
VFIS312309:2:Tyes46210
VPAR223926:0:Tyes---0-
VPAR223926:1:Tyes204-1494
VVUL196600:2:Tyes20451539
VVUL216895:1:Tno35101657
WSUC273121:0:Tyes1216140402221773
XAXO190486:0:Tyes46210
XCAM190485:0:Tyes46210
XCAM314565:0:Tno20456
XCAM316273:0:Tno57320
XCAM487884:0:Tno46210
XORY291331:0:Tno20456
XORY342109:0:Tyes20456
XORY360094:0:Tno4081012
YENT393305:1:Tyes283026250
YPES187410:5:Tno384036340
YPES214092:3:Tno204537
YPES349746:2:Tno204520
YPES360102:3:Tyes204539
YPES377628:2:Tno373935340
YPES386656:2:Tno343632310
YPSE273123:2:Tno204536
YPSE349747:2:Tno363833320
ZMOB264203:0:Tyes240-24



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