CANDIDATE ID: 255

CANDIDATE ID: 255

NUMBER OF GENES: 5
AVERAGE SCORE:    9.9952080e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G370 (flhA) (b1879)
   Products of gene:
     - G370-MONOMER (flagellar biosynthesis protein FlhA)
     - CPLX0-7451 (Flagellar Export Apparatus)
     - CPLX0-7452 (Flagellum)

- EG10151 (cheZ) (b1881)
   Products of gene:
     - CHEZ-MONOMER (CheZ)
     - CHEZ-CPLX (CheZ)

- EG10150 (cheY) (b1882)
   Products of gene:
     - CHEY-MONOMER (chemotaxis regulator transmitting signal to flagellar motor component)
     - MONOMER0-4170 (CheY-acetylated)
     - PHOSPHO-CHEY (CheY-Pasp)

- EG10147 (cheB) (b1883)
   Products of gene:
     - CHEB-MONOMER (CheB)
     - PHOSPHO-CHEB (CheB-Pasp)
       Reactions:
        Tapglu-Me + H2O  ->  methanol + Tapglu
        Targlu-Me + H2O  ->  methanol + Targlu
        Trgglu-Me + H2O  ->  methanol + Trgglu
        Tsrglu-Me + H2O  ->  methanol + Tsrglu
        Tsrgln + H2O  ->  ammonia + Tsrglu
        Trggln + H2O  ->  ammonia + Trgglu
        Targln + H2O  ->  ammonia + Targlu
        Tapgln + H2O  ->  ammonia + Tapglu
        a protein-L-glutamine + H2O  ->  ammonia + a protein L-glutamate
        a protein-L-glutamate--O5-methyl-ester + H2O  ->  a protein L-glutamate + methanol

- EG10146 (cheA) (b1888)
   Products of gene:
     - CHEA-SMALL (CheA(S))
     - TSR-GLN (Tsrgln)
     - TSR-GLU (Tsrglu)
     - TSR-GLUME (Tsrglu-Me)
     - TRG-GLN (Trggln)
     - TRG-GLU (Trgglu)
     - TRG-GLUME (Trgglu-Me)
     - TAP-GLN (Tapgln)
     - TAP-GLU (Tapglu)
     - TAP-GLUME (Tapglu-Me)
     - TAR-GLN (Targln)
     - TAR-GLU (Targlu)
     - TAR-GLUME (Targlu-Me)
       Regulatees:
     - PROTEIN-CHEAP (CheA-Phis)
     - PROTEIN-CHEA (CheA(L) monomer)
     - CHEA-CPLX (CheA(L))
     - TAR-CPLX (MCP-II)
     - TAP-CPLX (MCP-IV)
     - TRG-CPLX (MCP-III)
     - TSR-CPLX (MCP-I)



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ORGANISMS CONTAINING AT LEAST 4 GENES FROM THE GROUP:

Total number of orgs: 202
Effective number of orgs (counting one per cluster within 468 clusters): 145

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM44
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A4
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110184
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103314
XCAM487884 Xanthomonas campestris pv. paulliniae4
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-104
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80044
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339134
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3064
WSUC273121 ncbi Wolinella succinogenes DSM 17404
VVUL216895 ncbi Vibrio vulnificus CMCP65
VVUL196600 ncbi Vibrio vulnificus YJ0165
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106335
VFIS312309 ncbi Vibrio fischeri ES1144
VEIS391735 ncbi Verminephrobacter eiseniae EF01-25
VCHO345073 ncbi Vibrio cholerae O3955
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169615
TTUR377629 ncbi Teredinibacter turnerae T79015
TLET416591 ncbi Thermotoga lettingae TMO4
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12514
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252595
TCRU317025 ncbi Thiomicrospira crunogena XCL-25
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT25
SSP94122 ncbi Shewanella sp. ANA-35
SSON300269 ncbi Shigella sonnei Ss0465
SSED425104 ncbi Shewanella sediminis HAW-EB35
SPRO399741 ncbi Serratia proteamaculans 5685
SPEA398579 ncbi Shewanella pealeana ATCC 7003455
SONE211586 ncbi Shewanella oneidensis MR-15
SMEL266834 ncbi Sinorhizobium meliloti 10214
SMED366394 ncbi Sinorhizobium medicae WSM4194
SLOI323850 ncbi Shewanella loihica PV-45
SHIGELLA ncbi Shigella flexneri 2a str. 2457T5
SHAL458817 ncbi Shewanella halifaxensis HAW-EB45
SFLE373384 ncbi Shigella flexneri 5 str. 84015
SFLE198214 ncbi Shigella flexneri 2a str. 3015
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4765
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty25
SDEN318161 ncbi Shewanella denitrificans OS2175
SDEG203122 ncbi Saccharophagus degradans 2-405
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1855
SBAL399599 ncbi Shewanella baltica OS1955
SACI56780 ncbi Syntrophus aciditrophicus SB4
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170254
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170294
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.14
RSOL267608 ncbi Ralstonia solanacearum GMI10005
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111704
RPAL316058 ncbi Rhodopseudomonas palustris HaA24
RPAL316057 ncbi Rhodopseudomonas palustris BisB54
RPAL316056 ncbi Rhodopseudomonas palustris BisB184
RPAL316055 ncbi Rhodopseudomonas palustris BisA534
RPAL258594 ncbi Rhodopseudomonas palustris CGA0094
RMET266264 ncbi Ralstonia metallidurans CH345
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38414
RFER338969 ncbi Rhodoferax ferrireducens T1185
REUT381666 ncbi Ralstonia eutropha H165
REUT264198 ncbi Ralstonia eutropha JMP1345
RETL347834 ncbi Rhizobium etli CFN 424
RDEN375451 ncbi Roseobacter denitrificans OCh 1144
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30005
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a5
PSTU379731 ncbi Pseudomonas stutzeri A15015
PPUT76869 ncbi Pseudomonas putida GB-15
PPUT351746 ncbi Pseudomonas putida F15
PPUT160488 ncbi Pseudomonas putida KT24405
PPRO298386 ncbi Photobacterium profundum SS95
PMEN399739 ncbi Pseudomonas mendocina ymp5
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO15
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PFLU220664 ncbi Pseudomonas fluorescens Pf-55
PFLU216595 ncbi Pseudomonas fluorescens SBW255
PFLU205922 ncbi Pseudomonas fluorescens Pf0-15
PENT384676 ncbi Pseudomonas entomophila L485
PCAR338963 ncbi Pelobacter carbinolicus DSM 23804
PATL342610 ncbi Pseudoalteromonas atlantica T6c5
PAER208964 ncbi Pseudomonas aeruginosa PAO15
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA145
NSP387092 ncbi Nitratiruptor sp. SB155-24
NSP35761 Nocardioides sp.4
NEUT335283 ncbi Nitrosomonas eutropha C915
NEUR228410 ncbi Nitrosomonas europaea ATCC 197185
MXAN246197 ncbi Myxococcus xanthus DK 16224
MSP409 Methylobacterium sp.4
MSP400668 ncbi Marinomonas sp. MWYL15
MPET420662 ncbi Methylibium petroleiphilum PM15
MMAR394221 ncbi Maricaulis maris MCS104
MMAG342108 ncbi Magnetospirillum magneticum AMB-14
MFLA265072 ncbi Methylobacillus flagellatus KT5
MEXT419610 ncbi Methylobacterium extorquens PA14
MAQU351348 ncbi Marinobacter aquaeolei VT85
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-004
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1304
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566014
LCHO395495 ncbi Leptothrix cholodnii SP-65
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1974
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5504
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)4
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)4
KRAD266940 ncbi Kineococcus radiotolerans SRS302164
JSP375286 ncbi Janthinobacterium sp. Marseille5
JSP290400 ncbi Jannaschia sp. CCS14
ILOI283942 ncbi Idiomarina loihiensis L2TR5
HHEP235279 ncbi Helicobacter hepaticus ATCC 514494
HHAL349124 ncbi Halorhodospira halophila SL14
HCHE349521 ncbi Hahella chejuensis KCTC 23965
HARS204773 ncbi Herminiimonas arsenicoxydans5
GURA351605 ncbi Geobacter uraniireducens Rf44
GSUL243231 ncbi Geobacter sulfurreducens PCA4
GOXY290633 ncbi Gluconobacter oxydans 621H4
GMET269799 ncbi Geobacter metallireducens GS-154
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B14
ESP42895 Enterobacter sp.5
EFER585054 ncbi Escherichia fergusonii ATCC 354695
ECOO157 ncbi Escherichia coli O157:H7 EDL9335
ECOL83334 Escherichia coli O157:H75
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI15
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)5
ECOL439855 ncbi Escherichia coli SMS-3-55
ECOL413997 ncbi Escherichia coli B str. REL6065
ECOL409438 ncbi Escherichia coli SE115
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5365
ECOL331111 ncbi Escherichia coli E24377A5
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0735
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough4
DPSY177439 ncbi Desulfotalea psychrophila LSv544
DHAF138119 ncbi Desulfitobacterium hafniense Y514
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G204
DARO159087 ncbi Dechloromonas aromatica RCB5
CVIO243365 ncbi Chromobacterium violaceum ATCC 124725
CSP78 Caulobacter sp.4
CSAL290398 ncbi Chromohalobacter salexigens DSM 30435
CPSY167879 ncbi Colwellia psychrerythraea 34H5
CKLU431943 ncbi Clostridium kluyveri DSM 5554
CJAP155077 Cellvibrio japonicus5
CAULO ncbi Caulobacter crescentus CB154
BVIE269482 ncbi Burkholderia vietnamiensis G45
BTUR314724 ncbi Borrelia turicatae 91E1354
BTHA271848 ncbi Burkholderia thailandensis E2645
BSUB ncbi Bacillus subtilis subtilis 1684
BSP376 Bradyrhizobium sp.4
BSP36773 Burkholderia sp.5
BPSE320373 ncbi Burkholderia pseudomallei 6685
BPSE320372 ncbi Burkholderia pseudomallei 1710b5
BPSE272560 ncbi Burkholderia pseudomallei K962435
BPET94624 Bordetella petrii5
BPER257313 ncbi Bordetella pertussis Tohama I5
BPAR257311 ncbi Bordetella parapertussis 128225
BMAL320389 ncbi Burkholderia mallei NCTC 102475
BMAL320388 ncbi Burkholderia mallei SAVP15
BMAL243160 ncbi Burkholderia mallei ATCC 233445
BLIC279010 ncbi Bacillus licheniformis ATCC 145804
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1104
BHER314723 ncbi Borrelia hermsii DAH4
BHAL272558 ncbi Bacillus halodurans C-1254
BGAR290434 ncbi Borrelia garinii PBi4
BCEN331272 ncbi Burkholderia cenocepacia HI24245
BCEN331271 ncbi Burkholderia cenocepacia AU 10545
BBUR224326 ncbi Borrelia burgdorferi B314
BBRO257310 ncbi Bordetella bronchiseptica RB505
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1004
BAMY326423 ncbi Bacillus amyloliquefaciens FZB424
BAMB398577 ncbi Burkholderia ambifaria MC40-65
BAMB339670 ncbi Burkholderia ambifaria AMMD5
BAFZ390236 ncbi Borrelia afzelii PKo4
ASP62928 ncbi Azoarcus sp. BH725
ASP232721 ncbi Acidovorax sp. JS425
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4495
AMET293826 ncbi Alkaliphilus metalliredigens QYMF4
AHYD196024 Aeromonas hydrophila dhakensis5
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-15
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C4
ACRY349163 ncbi Acidiphilium cryptum JF-54
ACEL351607 ncbi Acidothermus cellulolyticus 11B4
ACAU438753 ncbi Azorhizobium caulinodans ORS 5714
ABUT367737 ncbi Arcobacter butzleri RM40184
ABAU360910 ncbi Bordetella avium 197N5
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3454
AAVE397945 ncbi Acidovorax citrulli AAC00-15


Names of the homologs of the genes in the group in each of these orgs
  G370   EG10151   EG10150   EG10147   EG10146   
ZMOB264203 ZMO0624ZMO0079ZMO0081ZMO0083
YPSE349747 YPSIP31758_2333YPSIP31758_1647YPSIP31758_1646YPSIP31758_1645YPSIP31758_1638
YPSE273123 YPTB1666YPTB2396YPTB2397YPTB2398YPTB2405
YPES386656 YPDSF_1333YPDSF_1767YPDSF_1768YPDSF_1769YPDSF_1781
YPES377628 YPN_2333YPN_1950YPN_1951YPN_1952YPN_1964
YPES360102 YPA_1165YPA_1841YPA_1842YPA_1843YPA_1855
YPES349746 YPANGOLA_A0243YPANGOLA_A3521YPANGOLA_A3520YPANGOLA_A3519YPANGOLA_A2825
YPES214092 YPO1791YPO1681YPO1680YPO1679YPO1666
YPES187410 Y2518Y1843Y1842Y1841Y1827
YENT393305 YE2566YE2569YE2570YE2571YE2577
XORY360094 XOOORF_2853XOOORF_2858XOOORF_1821XOOORF_1847
XORY342109 XOO2477XOO2481XOO2714XOO2693
XORY291331 XOO2618XOO2622XOO2859XOO2836
XCAM487884 XCC-B100_2205XCC-B100_2200XCC-B100_2154XCC-B100_2173
XCAM316273 XCAORF_2176XCAORF_2170XCAORF_2119XCAORF_2140
XCAM314565 XC_2278XC_2282XC_2323XC_2303
XCAM190485 XCC1909XCC1905XCC1866XCC1885
XAXO190486 XAC1936XAC1932XAC1888XAC1903
WSUC273121 WS1053WS0619WS1213WS2083
VVUL216895 VV1_1949VV1_1954VV1_1953VV2_1161VV2_1168
VVUL196600 VV2467VV2462VV2463VVA1685VVA1691
VPAR223926 VP2235VP2230VP2231VP2228VP2229
VFIS312309 VF1837VF1832VF1833VF1831
VEIS391735 VEIS_0931VEIS_4424VEIS_4423VEIS_2172VEIS_2176
VCHO345073 VC0395_A1657VC0395_A1652VC0395_A1653VC0395_0154VC0395_0148
VCHO VC2069VC2064VC2065VC1401VCA1095
TTUR377629 TERTU_1360TERTU_1366TERTU_1365TERTU_4385TERTU_1339
TLET416591 TLET_0623TLET_1009TLET_0747TLET_0631
TDEN326298 TMDEN_0724TMDEN_1672TMDEN_0978TMDEN_1530
TDEN292415 TBD_1246TBD_1613TBD_1614TBD_1615TBD_1624
TCRU317025 TCR_0744TCR_0749TCR_0748TCR_0758TCR_1612
STYP99287 STM1913STM1915STM1916STM1917STM1921
SSP94122 SHEWANA3_1356SHEWANA3_1361SHEWANA3_1360SHEWANA3_2213SHEWANA3_2218
SSON300269 SSO_0273SSO_1236SSO_1235SSO_1234SSO_1229
SSED425104 SSED_3052SSED_3047SSED_3048SSED_0182SSED_0186
SPRO399741 SPRO_2976SPRO_2978SPRO_2979SPRO_2980SPRO_2985
SPEA398579 SPEA_1375SPEA_1380SPEA_1379SPEA_1382SPEA_1381
SONE211586 SO_3213SO_3208SO_3209SO_2126SO_2121
SMEL266834 SMC03054SMC03011SMC03010SMC03007
SMED366394 SMED_0283SMED_0239SMED_0238SMED_0235
SLOI323850 SHEW_1380SHEW_1385SHEW_1384SHEW_0109SHEW_0113
SHIGELLA FHIACHEZCHEYCHEBCHEA
SHAL458817 SHAL_1462SHAL_1467SHAL_1466SHAL_1469SHAL_1468
SFLE373384 SFV_0300SFV_1927SFV_1928SFV_1929SFV_1934
SFLE198214 AAN41936.1AAN43483.1AAN43484.1AAN43485.1AAN43490.1
SENT454169 SEHA_C2128SEHA_C2130SEHA_C2131SEHA_C2132SEHA_C2137
SENT321314 SCH_1920SCH_1922SCH_1923SCH_1924SCH_1928
SENT295319 SPA0955SPA0953SPA0952SPA0951SPA0947
SENT220341 STY2122STY2124STY2125STY2126STY2130
SENT209261 T0964T0962T0961T0960T0956
SDEN318161 SDEN_1340SDEN_1345SDEN_1344SDEN_3301SDEN_3296
SDEG203122 SDE_2167SDE_2162SDE_2163SDE_3102SDE_3107
SBOY300268 SBO_1121SBO_1119SBO_1118SBO_1117
SBAL402882 SHEW185_2922SHEW185_2917SHEW185_2918SHEW185_2242SHEW185_2247
SBAL399599 SBAL195_3054SBAL195_3049SBAL195_3050SBAL195_2359SBAL195_2364
SACI56780 SYN_02830SYN_00962SYN_00964SYN_00963
RSPH349102 RSPH17025_1618RSPH17025_1793RSPH17025_0268RSPH17025_1794
RSPH349101 RSPH17029_1664RSPH17029_1101RSPH17029_0240RSPH17029_1100
RSPH272943 RSP_0034RSP_2437RSP_1588RSP_2436
RSOL267608 RSP1393RSC0742RSP1402RSP1403RSP1408
RRUB269796 RRU_A0539RRU_A2837RRU_A2323RRU_A1399
RPAL316058 RPB_3906RPB_1181RPB_3917RPB_3920
RPAL316057 RPD_3666RPD_1285RPD_3675RPD_3678
RPAL316056 RPC_4225RPC_0897RPC_4668RPC_4676
RPAL316055 RPE_4264RPE_0920RPE_1198RPE_1193
RPAL258594 RPA1638RPA1175RPA0137RPA0142
RMET266264 RMET_3699RMET_3695RMET_3694RMET_3693RMET_3689
RLEG216596 RL0735RL0687RL0691RL0688
RFER338969 RFER_3707RFER_3705RFER_3704RFER_0571RFER_0567
REUT381666 H16_B0253H16_B0245H16_B0244H16_B0243H16_B0239
REUT264198 REUT_B5616REUT_B5614REUT_B5613REUT_B5612REUT_B5608
RETL347834 RHE_CH00686RHE_CH00638RHE_CH00642RHE_CH00639
RDEN375451 RD1_0149RD1_3062RD1_2244RD1_3059
PSYR223283 PSPTO_1976PSPTO_1981PSPTO_1980PSPTO_0908PSPTO_0913
PSYR205918 PSYR_3440PSYR_3435PSYR_3436PSYR_0781PSYR_0786
PSTU379731 PST_2572PST_2567PST_2568PST_2565PST_2566
PPUT76869 PPUTGB1_3913PPUTGB1_3908PPUTGB1_3909PPUTGB1_3906PPUTGB1_3907
PPUT351746 PPUT_1523PPUT_1528PPUT_1527PPUT_1530PPUT_1529
PPUT160488 PP_4344PP_4339PP_4340PP_4337PP_4338
PPRO298386 PBPRA0936PBPRA0941PBPRA0940PBPRA0778PBPRA0774
PMEN399739 PMEN_2808PMEN_2803PMEN_2804PMEN_1564PMEN_2802
PLUM243265 PLU1896PLU1858PLU1857PLU1856PLU1851
PHAL326442 PSHAA0806PSHAA0811PSHAA0810PSHAA0812
PFLU220664 PFL_1664PFL_1669PFL_1668PFL_1671PFL_1670
PFLU216595 PFLU4420PFLU4415PFLU4416PFLU5088PFLU5093
PFLU205922 PFL_1560PFL_1565PFL_1564PFL_1567PFL_1566
PENT384676 PSEEN3799PSEEN3794PSEEN3795PSEEN3792PSEEN3793
PCAR338963 PCAR_1162PCAR_1205PCAR_1200PCAR_1197
PATL342610 PATL_3033PATL_3028PATL_3029PATL_3026PATL_3027
PAER208964 PA1452PA1457PA1456PA0173PA0178
PAER208963 PA14_45680PA14_45610PA14_45620PA14_02180PA14_02250
NSP387092 NIS_0615NIS_0601NIS_0273NIS_0604
NSP35761 NOCA_0739NOCA_3595NOCA_3599NOCA_3604
NEUT335283 NEUT_2444NEUT_1275NEUT_1276NEUT_1173NEUT_1167
NEUR228410 NE2488NE1924NE1923NE1859NE1866
MXAN246197 MXAN_2463MXAN_4751MXAN_4752MXAN_4758
MSP409 M446_3956M446_2223M446_4835M446_4838
MSP400668 MMWYL1_3430MMWYL1_3426MMWYL1_3427MMWYL1_3304MMWYL1_3299
MPET420662 MPE_A3078MPE_A2875MPE_A2874MPE_A2702MPE_A0585
MMAR394221 MMAR10_0681MMAR10_0610MMAR10_0661MMAR10_0658
MMAG342108 AMB0498AMB3501AMB0323AMB0326
MFLA265072 MFLA_1945MFLA_1928MFLA_1929MFLA_1930MFLA_1936
MEXT419610 MEXT_0819MEXT_0419MEXT_1532MEXT_1529
MAQU351348 MAQU_1978MAQU_1973MAQU_1974MAQU_1971MAQU_1972
LINT363253 LI0530LI0526LI1137LI1144
LINT267671 LIC_11376LIC_11526LIC_11520LIC_11524
LINT189518 LA2607LA2423LA2429LA1251
LCHO395495 LCHO_1619LCHO_0998LCHO_0999LCHO_0702LCHO_1599
LBOR355277 LBJ_1624LBJ_1810LBJ_1816LBJ_0927
LBOR355276 LBL_1842LBL_1473LBL_1467LBL_2106
LBIF456481 LEPBI_I2546LEPBI_I1585LEPBI_I1579LEPBI_I2392
LBIF355278 LBF_2466LBF_1534LBF_1528LBF_2324
KRAD266940 KRAD_1673KRAD_0323KRAD_0321KRAD_0314
JSP375286 MMA_2086MMA_1086MMA_2090MMA_2091MMA_2095
JSP290400 JANN_4186JANN_2838JANN_2844JANN_2841
ILOI283942 IL1120IL1115IL1116IL1113IL1114
HHEP235279 HH_0467HH_0825HH_0456HH_0672
HHAL349124 HHAL_0475HHAL_0476HHAL_2160HHAL_2167
HCHE349521 HCH_05174HCH_05169HCH_05170HCH_03703HCH_00455
HARS204773 HEAR1311HEAR0953HEAR1307HEAR1305HEAR1301
GURA351605 GURA_4111GURA_4220GURA_2165GURA_2169
GSUL243231 GSU_3056GSU_0403GSU_1145GSU_1290
GOXY290633 GOX0420GOX1556GOX1555GOX1552
GMET269799 GMET_0426GMET_3119GMET_1075GMET_1080
FNOD381764 FNOD_0376FNOD_0092FNOD_0046FNOD_0690
ESP42895 ENT638_2446ENT638_2452ENT638_2453ENT638_2454ENT638_2466
EFER585054 EFER_1195EFER_1145EFER_1144EFER_1143EFER_1133
ECOO157 FLHACHEZCHEYCHEBCHEA
ECOL83334 ECS2589ECS2591ECS2592ECS2593ECS2598
ECOL585397 ECED1_2147ECED1_2149ECED1_2150ECED1_2151ECED1_2156
ECOL585057 ECIAI39_1171ECIAI39_1169ECIAI39_1168ECIAI39_1167ECIAI39_1163
ECOL585056 ECUMN_2176ECUMN_2178ECUMN_2179ECUMN_2180ECUMN_2185
ECOL585055 EC55989_2058EC55989_2060EC55989_2061EC55989_2062EC55989_2067
ECOL585035 ECS88_1937ECS88_1939ECS88_1940ECS88_1941ECS88_1945
ECOL585034 ECIAI1_1966ECIAI1_1968ECIAI1_1969ECIAI1_1970ECIAI1_1975
ECOL481805 ECOLC_1753ECOLC_1751ECOLC_1750ECOLC_1749ECOLC_1744
ECOL469008 ECBD_1759ECBD_1757ECBD_1756ECBD_1755ECBD_1750
ECOL439855 ECSMS35_1308ECSMS35_1303ECSMS35_1302ECSMS35_1301ECSMS35_1296
ECOL413997 ECB_01850ECB_01852ECB_01853ECB_01854ECB_01859
ECOL409438 ECSE_2114ECSE_2116ECSE_2117ECSE_2118ECSE_2123
ECOL405955 APECO1_928APECO1_930APECO1_931APECO1_932APECO1_936
ECOL364106 UTI89_C2082UTI89_C2085UTI89_C2086UTI89_C2087UTI89_C2091
ECOL362663 ECP_1824ECP_1826ECP_1827ECP_1828ECP_1832
ECOL331111 ECE24377A_2111ECE24377A_2114ECE24377A_2115ECE24377A_2116ECE24377A_2121
ECOL316407 ECK1880:JW1868:B1879ECK1882:JW1870:B1881ECK1883:JW1871:B1882ECK1884:JW1872:B1883ECK1889:JW1877:B1888
ECOL199310 C2293C2296C2297C2298C2303
ECAR218491 ECA1697ECA1695ECA1694ECA1693ECA1689
DVUL882 DVU_3232DVU_3228DVU_1596DVU_1594
DPSY177439 DP2675DP2651DP2644DP2642
DHAF138119 DSY2974DSY4623DSY2992DSY2994
DDES207559 DDE_0380DDE_0384DDE_2104DDE_2106
DARO159087 DARO_0740DARO_0737DARO_0736DARO_0732DARO_0726
CVIO243365 CV_1025CV_3449CV_3448CV_3436CV_3442
CSP78 CAUL_1017CAUL_0283CAUL_0282CAUL_0279
CSAL290398 CSAL_2015CSAL_2017CSAL_2018CSAL_2020CSAL_2024
CPSY167879 CPS_1516CPS_1521CPS_1520CPS_1523CPS_1522
CKLU431943 CKL_1167CKL_1122CKL_0573CKL_2129
CJAP155077 CJA_2144CJA_2139CJA_2140CJA_2940CJA_2945
CAULO CC0910CC0591CC0436CC0433
BVIE269482 BCEP1808_0228BCEP1808_0222BCEP1808_0221BCEP1808_0220BCEP1808_0215
BTUR314724 BT0271BT0570BT0568BT0669
BTHA271848 BTH_I3169BTH_I3175BTH_I3176BTH_I3177BTH_II0156
BSUB BSU16390BSU23120BSU16420BSU16430
BSP376 BRADO1503BRADO7008BRADO1827BRADO1822
BSP36773 BCEP18194_A3371BCEP18194_A3365BCEP18194_A3364BCEP18194_A3363BCEP18194_A3358
BPSE320373 BURPS668_3843BURPS668_3848BURPS668_3849BURPS668_3850BURPS668_A0204
BPSE320372 BURPS1710B_A0069BURPS1710B_A0075BURPS1710B_A0076BURPS1710B_A0077BURPS1710B_A0082
BPSE272560 BPSL3294BPSL3299BPSL3300BPSL3301BPSL3306
BPET94624 BPET2114BPET2108BPET2107BPET2106BPET2102
BPER257313 BP2261BP1034BP1033BP1032BP1028
BPAR257311 BPP2215BPP1478BPP1477BPP1476BPP1472
BMAL320389 BMA10247_3129BMA10247_3124BMA10247_3123BMA10247_3122BMA10247_3116
BMAL320388 BMASAVP1_A3422BMASAVP1_A3427BMASAVP1_A3428BMASAVP1_A3429BMASAVP1_A3435
BMAL243160 BMA_2846BMA_2851BMA_2852BMA_2854BMA_2859
BLIC279010 BL01254BL00658BL01251BL01250
BJAP224911 BLL2207BLL7479BLR2349BLL0393
BHER314723 BH0271BH0570BH0568BH0669
BHAL272558 BH2438BH1580BH2435BH2970
BGAR290434 BG0274BG0580BG0578BG0692
BCEN331272 BCEN2424_0268BCEN2424_0263BCEN2424_0262BCEN2424_0261BCEN2424_0256
BCEN331271 BCEN_2839BCEN_2844BCEN_2845BCEN_2846BCEN_2851
BBUR224326 BB_0271BB_0570BB_0568BB_0669
BBRO257310 BB2554BB2552BB2551BB2550BB2546
BBAC264462 BD3321BD1825BD3467BD3469
BAMY326423 RBAM_016230RBAM_021260RBAM_016260RBAM_016270
BAMB398577 BAMMC406_0195BAMMC406_0189BAMMC406_0188BAMMC406_0187BAMMC406_0182
BAMB339670 BAMB_0182BAMB_0176BAMB_0175BAMB_0174BAMB_0169
BAFZ390236 BAPKO_0281BAPKO_0600BAPKO_0598BAPKO_0713
ASP62928 AZO1104AZO1461AZO1460AZO1456AZO1451
ASP232721 AJS_3820AJS_3818AJS_3817AJS_3786AJS_3790
ASAL382245 ASA_1351ASA_1356ASA_1355ASA_3272ASA_3266
AMET293826 AMET_0615AMET_1518AMET_2699AMET_2698
AHYD196024 AHA_1379AHA_1384AHA_1383AHA_1030AHA_1036
AEHR187272 MLG_0982MLG_0987MLG_0986MLG_0989MLG_0988
ADEH290397 ADEH_1358ADEH_1378ADEH_1373ADEH_1370
ACRY349163 ACRY_1471ACRY_2712ACRY_2711ACRY_2708
ACEL351607 ACEL_0861ACEL_1787ACEL_1789ACEL_1793
ACAU438753 AZC_0654AZC_0620AZC_0664AZC_0661
ABUT367737 ABU_1938ABU_1967ABU_1188ABU_1185
ABAU360910 BAV1683BAV1681BAV1680BAV1679BAV1675
ABAC204669 ACID345_1638ACID345_2920ACID345_1770ACID345_1524
AAVE397945 AAVE_4413AAVE_4411AAVE_4410AAVE_4374AAVE_4378


Organism features enriched in list (features available for 191 out of the 202 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00046611792
Arrangment:Clusters 0.0090207117
Disease:Bubonic_plague 0.001172166
Disease:Gastroenteritis 0.00110661013
Endospores:No 0.000033348211
Endospores:Yes 0.0038598953
GC_Content_Range4:0-40 4.319e-2220213
GC_Content_Range4:40-60 0.000072194224
GC_Content_Range4:60-100 2.308e-977145
GC_Content_Range7:0-30 0.0008074647
GC_Content_Range7:30-40 1.828e-1714166
GC_Content_Range7:50-60 0.000070452107
GC_Content_Range7:60-70 1.312e-1075134
Genome_Size_Range5:0-2 5.136e-209155
Genome_Size_Range5:2-4 2.647e-934197
Genome_Size_Range5:4-6 3.295e-28119184
Genome_Size_Range5:6-10 0.00001532947
Genome_Size_Range9:0-1 0.0066319327
Genome_Size_Range9:1-2 1.347e-176128
Genome_Size_Range9:2-3 2.974e-914120
Genome_Size_Range9:4-5 1.680e-126296
Genome_Size_Range9:5-6 1.596e-115788
Genome_Size_Range9:6-8 2.823e-62638
Gram_Stain:Gram_Neg 2.606e-26166333
Gram_Stain:Gram_Pos 3.894e-217150
Habitat:Host-associated 0.003244154206
Habitat:Multiple 0.000072478178
Motility:No 3.633e-199151
Motility:Yes 1.258e-27148267
Optimal_temp.:25-30 3.301e-101919
Optimal_temp.:28-30 0.000375877
Optimal_temp.:37 0.000036018106
Oxygen_Req:Anaerobic 4.206e-615102
Oxygen_Req:Facultative 8.545e-689201
Shape:Coccus 3.909e-13282
Shape:Rod 2.728e-13153347
Shape:Sphere 0.0044453119
Shape:Spiral 0.00240491934
Temp._range:Hyperthermophilic 0.0010349123
Temp._range:Mesophilic 0.0000339172473
Temp._range:Thermophilic 0.0005325335



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 320
Effective number of orgs (counting one per cluster within 468 clusters): 243

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TROS309801 ncbi Thermomicrobium roseum DSM 51591
TPEN368408 ncbi Thermofilum pendens Hrk 50
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TFUS269800 ncbi Thermobifida fusca YX0
TELO197221 ncbi Thermosynechococcus elongatus BP-11
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)1
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SLAC55218 Ruegeria lacuscaerulensis1
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23380
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDYS300267 ncbi Shigella dysenteriae Sd1971
SCO ncbi Streptomyces coelicolor A3(2)0
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2050
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP101510 ncbi Rhodococcus jostii RHA10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-31
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 81
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP296591 ncbi Polaromonas sp. JS6661
PSP117 Pirellula sp.1
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PNAP365044 ncbi Polaromonas naphthalenivorans CJ20
PMUL272843 ncbi Pasteurella multocida multocida Pm700
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PING357804 ncbi Psychromonas ingrahamii 371
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OANT439375 ncbi Ochrobactrum anthropi ATCC 491881
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NOCE323261 ncbi Nitrosococcus oceani ATCC 197071
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E0
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP266779 ncbi Chelativorans sp. BNC11
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1550
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAR368407 ncbi Methanoculleus marisnigri JR11
MLOT266835 ncbi Mesorhizobium loti MAFF3030991
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath1
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby1
LPNE297246 ncbi Legionella pneumophila Paris1
LPNE297245 ncbi Legionella pneumophila Lens1
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 11
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785780
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HNEP81032 Hyphomonas neptunium1
HINF71421 ncbi Haemophilus influenzae Rd KW200
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237791
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH11
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DSHI398580 ncbi Dinoroseobacter shibae DFL 121
DRAD243230 ncbi Deinococcus radiodurans R10
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC1
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CABO218497 ncbi Chlamydophila abortus S26/31
BXEN266265 ncbi Burkholderia xenovorans LB4001
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSUI470137 ncbi Brucella suis ATCC 234451
BSUI204722 ncbi Brucella suis 13301
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)1
BQUI283165 ncbi Bartonella quintana Toulouse0
BOVI236 Brucella ovis1
BMEL359391 ncbi Brucella melitensis biovar Abortus 23080
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M1
BLON206672 ncbi Bifidobacterium longum NCC27050
BHEN283166 ncbi Bartonella henselae Houston-10
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BCAN483179 ncbi Brucella canis ATCC 233651
BBAC360095 ncbi Bartonella bacilliformis KC5831
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)1
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9410
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP1667 Arthrobacter sp.0
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL030
APLE416269 ncbi Actinobacillus pleuropneumoniae L200
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110171
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
ABOR393595 ncbi Alcanivorax borkumensis SK20
AAUR290340 ncbi Arthrobacter aurescens TC10
AAEO224324 ncbi Aquifex aeolicus VF51


Names of the homologs of the genes in the group in each of these orgs
  G370   EG10151   EG10150   EG10147   EG10146   
XFAS405440
XFAS183190
XFAS160492
XAUT78245
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TVOL273116
TTHE300852
TTHE262724
TROS309801 TRD_A0038
TPEN368408
TKOD69014 TK0633
TFUS269800
TELO197221 TLL2438
TACI273075
STRO369723
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP387093
SSP321332 CYB_1934
SSP321327
SSP1148
SSP1131
SSOL273057
SSAP342451
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SLAC55218 SL1157_0847
SHAE279808
SGOR29390
SERY405948
SEPI176280
SEPI176279
SELO269084
SDYS300267 SDY_P185
SCO
SAVE227882
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037
SAGA211110
SAGA208435
SAGA205921
SACI330779
RXYL266117
RTYP257363
RSP101510
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RPOM246200 SPO_0170
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199 GRAORF_2733
RAKA293614
PTOR263820
PSP56811
PSP312153
PSP296591 BPRO_2467
PSP117 RB8323
PRUM264731
PPEN278197
PNAP365044
PMUL272843
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PING357804 PING_3597
PGIN242619
PFUR186497
PDIS435591
PCRY335284
PAST100379
PARS340102
PARC259536
PAER178306
PACN267747
OTSU357244
OANT439375 OANT_4186
NSP103690
NSEN222891
NOCE323261 NOC_2158
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NGON242231
NFAR247156
NARO279238
MVAN350058 MVAN_1931
MTUB419947
MTUB336982
MTHE349307
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSUC221988
MSTA339860
MSP266779 MESO_0272
MSP189918
MSP164757
MSP164756
MSME246196
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAR368407 MEMAR_0944
MLOT266835 MLR2957
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MGIL350054
MGEN243273
MFLO265311
MCAP340047
MCAP243233 MCA_0832
MBOV410289
MBOV233413
MBAR269797 MBAR_A0984
MAVI243243
MART243272
MAER449447
MAEO419665
MABS561007
LXYL281090
LSAK314315
LREU557436
LPNE400673 LPC_1226
LPNE297246 LPP1749
LPNE297245 LPL1749
LPNE272624 LPG1785
LPLA220668
LMES203120
LLAC272623
LLAC272622
LJOH257314
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LACI272621
KPNE272620
IHOS453591
HWAL362976
HSOM228400
HSOM205914
HNEP81032 HNE_0273
HINF71421
HINF374930
HINF281310
HDUC233412
HBUT415426
HAUR316274 HAUR_0727
GVIO251221
GFOR411154
GBET391165 GBCGDNIH1_0915
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855
FSP106370
FRANT
FPHI484022
FNUC190304
FMAG334413
FJOH376686
FALN326424
ERUM302409
ERUM254945
EFAE226185
ECHA205920
ECAN269484
DSP255470
DSP216389
DSHI398580 DSHI_3258
DRAD243230
DNOD246195
DGEO319795
DETH243164
CVES412965
CTRA471473 CTLON_0341
CTRA471472 CTL0345
CTEP194439
CSUL444179
CRUT413404
CPRO264201 PC0749
CPNE182082 CPB0333
CPNE138677 CPJ0323
CPNE115713 CPN0323
CPNE115711 CP_0434
CPER289380
CPER195103
CPER195102
CPEL335992
CMUR243161 TC_0365
CMIC443906
CMIC31964
CMAQ397948
CKOR374847
CJEI306537
CHUT269798
CHOM360107
CGLU196627
CFEL264202 CF0548
CEFF196164
CDIP257309
CCHL340177
CCAV227941 CCA_00459
CBUR434922
CBUR360115
CBUR227377
CBLO291272
CBLO203907
CABO218497 CAB445
BXEN266265 BXE_B3007
BTRI382640
BTHE226186
BSUI470137 BSUIS_B1359
BSUI204722 BR_A1132
BSP107806 BU241
BQUI283165
BOVI236 GBOORFA1123
BMEL359391
BMEL224914 BMEII0167
BLON206672
BHEN283166
BFRA295405
BFRA272559
BCIC186490
BCAN483179 BCAN_B1161
BBAC360095 BARBAKC583_1160
BAPH372461 BCC_151
BAPH198804 BUSG236
BABO262698
AYEL322098
AVAR240292
AURANTIMONAS
ASP76114
ASP62977
ASP1667
APLE434271
APLE416269
APHA212042
APER272557
ANAE240017
AMAR329726 AM1_5096
AMAR234826
ALAI441768
AFER243159
ABOR393595
AAUR290340
AAEO224324 AQ_1212


Organism features enriched in list (features available for 297 out of the 320 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.00014401617
Arrangment:Singles 0.0034170131286
Disease:Pharyngitis 0.004328788
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00054681111
Disease:Wide_range_of_infections 0.00054681111
Disease:bronchitis_and_pneumonitis 0.004328788
Disease:gastroenteritis 0.0011650113
Endospores:No 0.0000699129211
Endospores:Yes 4.060e-71053
GC_Content_Range4:0-40 3.558e-9142213
GC_Content_Range4:40-60 0.0081203102224
GC_Content_Range4:60-100 0.000011352145
GC_Content_Range7:30-40 1.961e-7112166
GC_Content_Range7:50-60 0.004134043107
GC_Content_Range7:60-70 2.927e-743134
Genome_Size_Range5:0-2 1.101e-19126155
Genome_Size_Range5:2-4 0.0001859120197
Genome_Size_Range5:4-6 8.900e-2834184
Genome_Size_Range9:0-1 0.00002262427
Genome_Size_Range9:1-2 3.513e-14102128
Genome_Size_Range9:2-3 4.170e-785120
Genome_Size_Range9:4-5 1.989e-131796
Genome_Size_Range9:5-6 3.330e-111788
Genome_Size_Range9:6-8 0.00257521138
Gram_Stain:Gram_Neg 2.914e-9135333
Gram_Stain:Gram_Pos 1.943e-7103150
Habitat:Host-associated 5.246e-10140206
Habitat:Multiple 0.000035369178
Habitat:Terrestrial 0.0006868731
Motility:No 8.478e-31135151
Motility:Yes 5.339e-5843267
Optimal_temp.:- 0.0092262119257
Optimal_temp.:30-35 0.008597777
Optimal_temp.:30-37 0.00350401518
Optimal_temp.:37 0.000463769106
Oxygen_Req:Microaerophilic 0.0000406118
Pathogenic_in:Human 0.0019719124213
Salinity:Non-halophilic 0.008561964106
Shape:Coccobacillus 0.00599341011
Shape:Coccus 3.221e-227982
Shape:Rod 8.222e-12137347
Shape:Sphere 0.00003961819



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 2
Effective number of orgs (counting one per cluster within 468 clusters): 2

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
BGAR290434 ncbi Borrelia garinii PBi 0.00913552244
BAFZ390236 ncbi Borrelia afzelii PKo 0.00997792294


Names of the homologs of the genes in the group in each of these orgs
  G370   EG10151   EG10150   EG10147   EG10146   
BGAR290434 BG0274BG0580BG0578BG0692
BAFZ390236 BAPKO_0281BAPKO_0600BAPKO_0598BAPKO_0713


Organism features enriched in list (features available for 2 out of the 2 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Acrodermatitis_chronica_atrophicans 0.003430511
Disease:Lyme_disease 0.006849312
GC_Content_Range7:0-30 0.0063718247
Shape:Spiral 0.0033068234



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951500.6417
GLYCOCAT-PWY (glycogen degradation I)2461680.6190
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181510.5775
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491190.5682
AST-PWY (arginine degradation II (AST pathway))1201040.5660
TYRFUMCAT-PWY (tyrosine degradation I)1841300.5287
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001740.5266
PWY-1269 (CMP-KDO biosynthesis I)3251820.5260
PWY-4041 (γ-glutamyl cycle)2791660.5209
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861680.5179
PWY-5918 (heme biosynthesis I)2721630.5172
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251450.5143
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481840.4915
PWY-5148 (acyl-CoA hydrolysis)2271420.4874
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911640.4787
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911260.4765
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961650.4740
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761190.4717
PWY-5028 (histidine degradation II)130970.4629
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651840.4571
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901600.4535
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561070.4466
PWY-5340 (sulfate activation for sulfonation)3851880.4458
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391740.4412
GALACTITOLCAT-PWY (galactitol degradation)73650.4407
PWY-5913 (TCA cycle variation IV)3011610.4351
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551450.4346
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831170.4341
PWY-6193 (3-chlorocatechol degradation II (ortho))1941210.4302
PWY-6087 (4-chlorocatechol degradation)2231320.4270
SO4ASSIM-PWY (sulfate reduction I (assimilatory))3111630.4263
GLUCONSUPER-PWY (D-gluconate degradation)2291340.4250
REDCITCYC (TCA cycle variation II)1741120.4248
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911190.4244
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001590.4236
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291680.4213
GLUCARDEG-PWY (D-glucarate degradation I)1521020.4209
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94740.4169
PWY0-981 (taurine degradation IV)106800.4164
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)2121260.4144
P344-PWY (acrylonitrile degradation)2101250.4128
ARGSYNBSUB-PWY (arginine biosynthesis II (acetyl cycle))3831820.4074
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135920.4014
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491380.4009
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491380.4009
GALACTARDEG-PWY (D-galactarate degradation I)151990.4004



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG10151   EG10150   EG10147   EG10146   
G3700.9995020.9995380.9993420.999378
EG101510.9997570.9993770.999306
EG101500.999620.999499
EG101470.999889
EG10146



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PAIRWISE BLAST SCORES:

  G370   EG10151   EG10150   EG10147   EG10146   
G3700.0f0----
EG10151-0.0f0---
EG10150--0.0f0--
EG10147---0.0f0-
EG10146----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10147 EG10150 EG10151 G370 (centered at EG10150)
EG10146 (centered at EG10146)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G370   EG10151   EG10150   EG10147   EG10146   
314/623128/623245/623269/623293/623
AAEO224324:0:Tyes0----
AAVE397945:0:Tyes39373604
ABAC204669:0:Tyes114-14072450
ABAU360910:0:Tyes86540
ABUT367737:0:Tyes751-78030
ACAU438753:0:Tyes34-04441
ACEL351607:0:Tyes0-925927931
ACRY349163:8:Tyes0-125412531250
ADEH290397:0:Tyes0-201512
AEHR187272:0:Tyes05476
AFUL224325:0:Tyes---10
AHYD196024:0:Tyes34535034906
AMAR329726:9:Tyes--0--
AMET293826:0:Tyes0-87820392038
AORE350688:0:Tyes0--45
ASAL382245:5:Tyes05418431838
ASP232721:2:Tyes34323104
ASP62928:0:Tyes0366365361356
BAFZ390236:2:Fyes0-313311426
BAMB339670:3:Tno137650
BAMB398577:3:Tno137650
BAMY326423:0:Tyes0-50234
BANT260799:0:Tno377-0-327
BANT261594:2:Tno373-0--
BANT568206:2:Tyes0-403-57
BANT592021:2:Tno400-0-343
BAPH198804:0:Tyes0----
BAPH372461:0:Tyes0----
BBAC264462:0:Tyes1394-015241526
BBAC360095:0:Tyes0----
BBRO257310:0:Tyes86540
BBUR224326:21:Fno0-290288388
BCAN483179:0:Tno0----
BCEN331271:2:Tno056712
BCEN331272:3:Tyes127650
BCER226900:1:Tyes--0-324
BCER288681:0:Tno348-0-309
BCER315749:1:Tyes359-0-317
BCER405917:1:Tyes355-0-315
BCER572264:1:Tno367-0-328
BCLA66692:0:Tyes0---343
BGAR290434:2:Fyes0-305303417
BHAL272558:0:Tyes858-08551402
BHER314723:0:Fyes0-301299402
BJAP224911:0:Fyes1833-713519760
BLIC279010:0:Tyes0-58334
BMAL243160:1:Tno056813
BMAL320388:1:Tno056711
BMAL320389:1:Tyes138760
BMEL224914:0:Tno0----
BOVI236:0:Tyes0----
BPAR257311:0:Tno7086540
BPER257313:0:Tyes11055430
BPET94624:0:Tyes-6540
BPSE272560:1:Tyes056712
BPSE320372:1:Tno067813
BPSE320373:0:Tno----0
BPSE320373:1:Tno0567-
BPUM315750:0:Tyes0--34
BSP107806:2:Tyes0----
BSP36773:2:Tyes137650
BSP376:0:Tyes0-5231307302
BSUB:0:Tyes0-70034
BSUI204722:0:Tyes0----
BSUI470137:0:Tno0----
BTHA271848:0:Tno----0
BTHA271848:1:Tno0678-
BTHU281309:1:Tno363-0-324
BTHU412694:1:Tno329-0-293
BTUR314724:0:Fyes0-298296399
BVIE269482:7:Tyes137650
BWEI315730:4:Tyes374-0-330
BXEN266265:1:Tyes--0--
CABO218497:0:Tyes0----
CACE272562:1:Tyes0--7472
CAULO:0:Tyes481-16030
CBEI290402:0:Tyes0--57054
CBOT36826:1:Tno0--105103
CBOT441770:0:Tyes0--102100
CBOT441771:0:Tno0--104102
CBOT441772:1:Tno0--8381
CBOT498213:1:Tno0--9492
CBOT508765:1:Tyes60--02
CBOT515621:2:Tyes0--10098
CBOT536232:0:Tno0--104102
CCAV227941:1:Tyes0----
CCON360104:2:Tyes743-904-0
CCUR360105:0:Tyes321-0-1229
CDES477974:0:Tyes0--4344
CDIF272563:1:Tyes0--285282
CFEL264202:1:Tyes0----
CFET360106:0:Tyes743-989-0
CHYD246194:0:Tyes0--2224
CJAP155077:0:Tyes501794799
CJEJ192222:0:Tyes577-817-0
CJEJ195099:0:Tno608-897-0
CJEJ354242:2:Tyes555-791-0
CJEJ360109:0:Tyes402-0-1013
CJEJ407148:0:Tno579-829-0
CKLU431943:1:Tyes582-53701537
CMET456442:0:Tyes---10
CMUR243161:1:Tyes0----
CNOV386415:0:Tyes57--02
CPHY357809:0:Tyes5--10
CPNE115711:1:Tyes0----
CPNE115713:0:Tno0----
CPNE138677:0:Tno0----
CPNE182082:0:Tno0----
CPRO264201:0:Fyes0----
CPSY167879:0:Tyes05476
CSAL290398:0:Tyes02359
CSP501479:6:Fyes--3-0
CSP501479:7:Fyes0----
CSP78:2:Tyes736-430
CTET212717:0:Tyes0---67
CTRA471472:0:Tyes0----
CTRA471473:0:Tno0----
CVIO243365:0:Tyes02483248224702476
DARO159087:0:Tyes14111060
DDES207559:0:Tyes0-417521754
DHAF138119:0:Tyes0-16591820
DOLE96561:0:Tyes--970
DPSY177439:2:Tyes33-920
DRED349161:0:Tyes0--4748
DSHI398580:5:Tyes0----
DVUL882:1:Tyes1628-162420
ECAR218491:0:Tyes86540
ECOL199310:0:Tno034510
ECOL316407:0:Tno02349
ECOL331111:6:Tno034510
ECOL362663:0:Tno02348
ECOL364106:1:Tno03459
ECOL405955:2:Tyes02348
ECOL409438:6:Tyes02349
ECOL413997:0:Tno02349
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ECOL469008:0:Tno97650
ECOL481805:0:Tno97650
ECOL585034:0:Tno023410
ECOL585035:0:Tno02349
ECOL585055:0:Tno023410
ECOL585056:2:Tno023410
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ECOL585397:0:Tno02349
ECOL83334:0:Tno02349
ECOLI:0:Tno023410
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EFER585054:1:Tyes621211100
ELIT314225:0:Tyes--10-
ESP42895:1:Tyes067820
FNOD381764:0:Tyes329-420640
GBET391165:0:Tyes--0--
GKAU235909:1:Tyes0--34
GMET269799:1:Tyes0-2699652657
GOXY290633:5:Tyes0-112511241121
GSUL243231:0:Tyes2641-0738882
GTHE420246:1:Tyes0--23
GURA351605:0:Tyes1927-203604
HACI382638:1:Tyes632-664-0
HARS204773:0:Tyes3440340339335
HAUR316274:2:Tyes---0-
HCHE349521:0:Tyes45324527452831010
HHAL349124:0:Tyes-0117021709
HHEP235279:0:Tyes12-3760221
HMAR272569:8:Tyes---01
HMOD498761:0:Tyes216--0220
HMUK485914:1:Tyes---01
HNEP81032:0:Tyes0----
HPY:0:Tno652-679-0
HPYL357544:1:Tyes27-0-634
HPYL85963:0:Tno25-0-626
HSAL478009:4:Tyes---10
HSP64091:2:Tno---10
ILOI283942:0:Tyes72301
JSP290400:1:Tyes1368-063
JSP375286:0:Tyes10170102110221026
KRAD266940:2:Fyes0-136913711378
LBIF355278:2:Tyes928-60788
LBIF456481:2:Tno956-60809
LBOR355276:1:Tyes339-50580
LBOR355277:1:Tno619-7827870
LCHO395495:0:Tyes9192942950899
LINN272626:1:Tno0---12
LINT189518:1:Tyes1367-118011860
LINT267671:1:Tno0-148142146
LINT363253:3:Tyes3-0610617
LMON169963:0:Tno0---12
LMON265669:0:Tyes0---12
LPNE272624:0:Tno0----
LPNE297245:1:Fno0----
LPNE297246:1:Fyes0----
LPNE400673:0:Tno0----
LSPH444177:1:Tyes0--34
LWEL386043:0:Tyes0---12
MACE188937:0:Tyes---10
MAQU351348:2:Tyes72301
MBAR269797:1:Tyes----0
MBUR259564:0:Tyes---01
MCAP243233:0:Tyes---0-
MEXT419610:0:Tyes398-011271124
MFLA265072:0:Tyes170128
MHUN323259:0:Tyes---01
MLOT266835:2:Tyes0----
MMAG342108:0:Tyes175-317803
MMAR267377:0:Tyes---01
MMAR368407:0:Tyes---0-
MMAR394221:0:Tyes71-05148
MMAR402880:1:Tyes---01
MMAR426368:0:Tyes---01
MMAR444158:0:Tyes---10
MMAZ192952:0:Tyes---10
MPET420662:1:Tyes24862283-21110
MSP266779:3:Tyes0----
MSP400668:0:Tyes12912512650
MSP409:2:Tyes1665-025222525
MTHE264732:0:Tyes48---0
MVAN350058:0:Tyes--0--
MXAN246197:0:Tyes0-220522062212
NEUR228410:0:Tyes638666507
NEUT335283:2:Tyes125310911060
NHAM323097:2:Tyes204-0210-
NMUL323848:3:Tyes972-01-
NOCE323261:1:Tyes0----
NPHA348780:2:Tyes---10
NSP35761:1:Tyes0-286528692874
NSP387092:0:Tyes352-3380341
NWIN323098:0:Tyes6-20380-
OANT439375:4:Tyes0----
OCAR504832:0:Tyes0-1268-
OIHE221109:0:Tyes0--3980
PABY272844:0:Tyes---10
PAER208963:0:Tyes35053500350105
PAER208964:0:Tno12931298129705
PATL342610:0:Tyes72301
PCAR338963:0:Tyes0-423734
PENT384676:0:Tyes72301
PFLU205922:0:Tyes05476
PFLU216595:1:Tyes501644649
PFLU220664:0:Tyes05476
PHAL326442:1:Tyes054-6
PHOR70601:0:Tyes---01
PING357804:0:Tyes0----
PLUM243265:0:Fyes457650
PMEN399739:0:Tyes12661261126201260
PMOB403833:0:Tyes1190--01182
PPRO298386:2:Tyes16216716640
PPUT160488:0:Tno72301
PPUT351746:0:Tyes05476
PPUT76869:0:Tno72301
PSP117:0:Tyes0----
PSP296591:2:Tyes---0-
PSTU379731:0:Tyes72301
PSYR205918:0:Tyes26672662266305
PSYR223283:2:Tyes10611066106505
PTHE370438:0:Tyes0--4344
RALB246199:0:Tyes---0-
RCAS383372:0:Tyes--02318-
RDEN375451:4:Tyes0-272119682718
RETL347834:5:Tyes48-041
REUT264198:2:Tyes86540
REUT381666:1:Tyes146540
RFER338969:1:Tyes31403138313740
RLEG216596:6:Tyes48-041
RMET266264:1:Tyes106540
RPAL258594:0:Tyes1510-104905
RPAL316055:0:Tyes3313-0274269
RPAL316056:0:Tyes3324-037763784
RPAL316057:0:Tyes2405-024132416
RPAL316058:0:Tyes2737-027482751
RPOM246200:1:Tyes0----
RRUB269796:1:Tyes0-22911780857
RSOL267608:0:Tyes0-91015
RSOL267608:1:Tyes-0---
RSP357808:0:Tyes--2950-
RSPH272943:4:Tyes1493-8800879
RSPH349101:2:Tno1434-8640863
RSPH349102:5:Tyes1333-150801509
SACI56780:0:Tyes146-201
SALA317655:1:Tyes1176--0-
SBAL399599:3:Tyes72471972005
SBAL402882:1:Tno71070570605
SBOY300268:1:Tyes4210-
SDEG203122:0:Tyes501945950
SDEN318161:0:Tyes05420152010
SDYS300267:0:Tyes0----
SENT209261:0:Tno86540
SENT220341:0:Tno02348
SENT295319:0:Tno75430
SENT321314:2:Tno02348
SENT454169:2:Tno02349
SFLE198214:0:Tyes01578157915801585
SFLE373384:0:Tno01532153315341539
SFUM335543:0:Tyes--0-920
SGLO343509:3:Tyes02094-2095-
SHAL458817:0:Tyes05476
SHIGELLA:0:Tno01523152415251530
SLAC55218:1:Fyes0----
SLOI323850:0:Tyes13001305130404
SMED366394:3:Tyes48-430
SMEL266834:2:Tyes47-430
SONE211586:1:Tyes10701065106650
SPEA398579:0:Tno05476
SPRO399741:1:Tyes02349
SRUB309807:1:Tyes0-20--
SSED425104:0:Tyes29802975297604
SSON300269:1:Tyes0917916915910
SSP292414:1:Tyes--0-3
SSP292414:2:Tyes0----
SSP321332:0:Tyes----0
SSP644076:2:Fyes--0-3
SSP644076:6:Fyes0----
SSP94122:1:Tyes054897902
STHE292459:0:Tyes1489--40
STYP99287:1:Tyes02348
SWOL335541:0:Tyes0--4505
TCRU317025:0:Tyes05414887
TDEN243275:0:Tyes0--5901425
TDEN292415:0:Tyes0369370371380
TDEN326298:0:Tyes0-964260819
TELO197221:0:Tyes--0--
TERY203124:0:Tyes---30
TKOD69014:0:Tyes---0-
TLET416591:0:Tyes0-4001298
TMAR243274:0:Tyes496--0291
TPAL243276:0:Tyes346--2640
TPET390874:0:Tno0--501214
TPSE340099:0:Tyes5---0
TROS309801:0:Tyes0----
TSP1755:0:Tyes5---0
TSP28240:0:Tyes0--513209
TTEN273068:0:Tyes355--0350
TTUR377629:0:Tyes21272627430
UMET351160:0:Tyes---10
VCHO:0:Tyes6636586590-
VCHO:1:Fyes----0
VCHO345073:0:Tno---60
VCHO345073:1:Tno501--
VEIS391735:1:Tyes03465346412261230
VFIS312309:2:Tyes612-0
VPAR223926:1:Tyes72301
VVUL196600:1:Tyes---06
VVUL196600:2:Tyes501--
VVUL216895:0:Tno---06
VVUL216895:1:Tno054--
WSUC273121:0:Tyes401-05441331
XAXO190486:0:Tyes48-44015
XCAM190485:0:Tyes43-39019
XCAM314565:0:Tno0-44425
XCAM316273:0:Tno55-49021
XCAM487884:0:Tno49-44017
XORY291331:0:Tno0-4247224
XORY342109:0:Tyes0-4243222
XORY360094:0:Tno2005-2015049
YENT393305:1:Tyes034510
YPES187410:5:Tno6901615130
YPES214092:3:Tno1161312110
YPES349746:2:Tno03177317631752495
YPES360102:3:Tyes0685686687699
YPES377628:2:Tno38701214
YPES386656:2:Tno0443444445457
YPSE273123:2:Tno0729730731738
YPSE349747:2:Tno6899870
ZMOB264203:0:Tyes555-024



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