CANDIDATE ID: 274

CANDIDATE ID: 274

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9961833e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    2.5000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6478 (ssuA) (b0936)
   Products of gene:
     - G6478-MONOMER (SsuA)
     - ABC-56-CPLX (aliphatic sulfonate ABC transporter)
       Reactions:
        ATP + an aliphatic sulfonate[periplasmic space] + H2O  ->  an aliphatic sulfonate[cytosol] + ADP + phosphate

- G6476 (ssuC) (b0934)
   Products of gene:
     - YCBM-MONOMER (SsuC)
     - ABC-56-CPLX (aliphatic sulfonate ABC transporter)
       Reactions:
        ATP + an aliphatic sulfonate[periplasmic space] + H2O  ->  an aliphatic sulfonate[cytosol] + ADP + phosphate

- G6219 (tauC) (b0367)
   Products of gene:
     - TAUC-MONOMER (TauC)
     - ABC-64-CPLX (taurine ABC transporter)
       Reactions:
        taurine[periplasmic space] + ATP + H2O  ->  taurine[cytosol] + ADP + phosphate

- G6217 (tauA) (b0365)
   Products of gene:
     - TAUA-MONOMER (TauA)
     - ABC-64-CPLX (taurine ABC transporter)
       Reactions:
        taurine[periplasmic space] + ATP + H2O  ->  taurine[cytosol] + ADP + phosphate



Back to top


ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 178
Effective number of orgs (counting one per cluster within 468 clusters): 126

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola3
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80813
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3063
XAUT78245 ncbi Xanthobacter autotrophicus Py24
VEIS391735 ncbi Verminephrobacter eiseniae EF01-24
UMET351160 ncbi uncultured methanogenic archaeon RC-I3
TROS309801 ncbi Thermomicrobium roseum DSM 51593
TFUS269800 ncbi Thermobifida fusca YX4
SSON300269 ncbi Shigella sonnei Ss0464
SPRO399741 ncbi Serratia proteamaculans 5684
SMEL266834 ncbi Sinorhizobium meliloti 10214
SMED366394 ncbi Sinorhizobium medicae WSM4194
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23383
SDYS300267 ncbi Shigella dysenteriae Sd1974
SCO ncbi Streptomyces coelicolor A3(2)3
SBOY300268 ncbi Shigella boydii Sb2274
SAVE227882 ncbi Streptomyces avermitilis MA-46804
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170254
RSP101510 ncbi Rhodococcus jostii RHA14
RSOL267608 ncbi Ralstonia solanacearum GMI10004
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332093
RPOM246200 ncbi Ruegeria pomeroyi DSS-34
RPAL316058 ncbi Rhodopseudomonas palustris HaA24
RPAL316057 ncbi Rhodopseudomonas palustris BisB53
RPAL316055 ncbi Rhodopseudomonas palustris BisA534
RPAL258594 ncbi Rhodopseudomonas palustris CGA0094
RMET266264 ncbi Ralstonia metallidurans CH344
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38414
RFER338969 ncbi Rhodoferax ferrireducens T1184
REUT381666 ncbi Ralstonia eutropha H164
REUT264198 ncbi Ralstonia eutropha JMP1344
RETL347834 ncbi Rhizobium etli CFN 424
RDEN375451 ncbi Roseobacter denitrificans OCh 1143
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15013
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PNAP365044 ncbi Polaromonas naphthalenivorans CJ24
PMEN399739 ncbi Pseudomonas mendocina ymp4
PING357804 ncbi Psychromonas ingrahamii 374
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
OCAR504832 ncbi Oligotropha carboxidovorans OM53
OANT439375 ncbi Ochrobactrum anthropi ATCC 491883
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2554
NFAR247156 ncbi Nocardia farcinica IFM 101524
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-14
MTHE264732 ncbi Moorella thermoacetica ATCC 390734
MSP409 Methylobacterium sp.4
MSP189918 ncbi Mycobacterium sp. KMS4
MSP164757 ncbi Mycobacterium sp. JLS4
MSP164756 ncbi Mycobacterium sp. MCS4
MSME246196 ncbi Mycobacterium smegmatis MC2 1554
MPET420662 ncbi Methylibium petroleiphilum PM14
MMAG342108 ncbi Magnetospirillum magneticum AMB-14
MLOT266835 ncbi Mesorhizobium loti MAFF3030994
MKAN190192 ncbi Methanopyrus kandleri AV194
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK4
MEXT419610 ncbi Methylobacterium extorquens PA14
MAVI243243 ncbi Mycobacterium avium 1044
MAER449447 ncbi Microcystis aeruginosa NIES-8433
MABS561007 ncbi Mycobacterium abscessus ATCC 199774
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82934
LCAS321967 ncbi Lactobacillus casei ATCC 3343
KRAD266940 ncbi Kineococcus radiotolerans SRS302163
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP375286 ncbi Janthinobacterium sp. Marseille4
JSP290400 ncbi Jannaschia sp. CCS13
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237794
GVIO251221 ncbi Gloeobacter violaceus PCC 74213
GURA351605 ncbi Geobacter uraniireducens Rf44
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-24
GMET269799 ncbi Geobacter metallireducens GS-153
GBET391165 ncbi Granulibacter bethesdensis CGDNIH14
FSP1855 Frankia sp. EAN1pec3
FSP106370 ncbi Frankia sp. CcI34
FALN326424 ncbi Frankia alni ACN14a4
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DRED349161 ncbi Desulfotomaculum reducens MI-14
DHAF138119 ncbi Desulfitobacterium hafniense Y514
DARO159087 ncbi Dechloromonas aromatica RCB3
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CTET212717 ncbi Clostridium tetani E884
CSP78 Caulobacter sp.3
CSP501479 Citreicella sp. SE453
CKLU431943 ncbi Clostridium kluyveri DSM 5553
CJAP155077 Cellvibrio japonicus4
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130323
CDIF272563 ncbi Clostridium difficile 6304
CCON360104 ncbi Campylobacter concisus 138263
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80524
BXEN266265 ncbi Burkholderia xenovorans LB4004
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTHU412694 ncbi Bacillus thuringiensis Al Hakam4
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-274
BTHA271848 ncbi Burkholderia thailandensis E2644
BSUI470137 ncbi Brucella suis ATCC 234454
BSUI204722 ncbi Brucella suis 13304
BSUB ncbi Bacillus subtilis subtilis 1684
BSP376 Bradyrhizobium sp.4
BSP36773 Burkholderia sp.4
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii4
BPER257313 ncbi Bordetella pertussis Tohama I4
BPAR257311 ncbi Bordetella parapertussis 128224
BOVI236 Brucella ovis4
BMEL359391 ncbi Brucella melitensis biovar Abortus 23084
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M4
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BLIC279010 ncbi Bacillus licheniformis ATCC 145804
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1104
BCLA66692 ncbi Bacillus clausii KSM-K164
BCER572264 ncbi Bacillus cereus 03BB1024
BCER405917 Bacillus cereus W4
BCER315749 ncbi Bacillus cytotoxicus NVH 391-984
BCER288681 ncbi Bacillus cereus E33L4
BCER226900 ncbi Bacillus cereus ATCC 145794
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BCAN483179 ncbi Brucella canis ATCC 233654
BBRO257310 ncbi Bordetella bronchiseptica RB504
BANT592021 ncbi Bacillus anthracis A02484
BANT568206 ncbi Bacillus anthracis CDC 6844
BANT261594 ncbi Bacillus anthracis Ames Ancestor4
BANT260799 ncbi Bacillus anthracis Sterne4
BAMY326423 ncbi Bacillus amyloliquefaciens FZB424
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9414
AVAR240292 ncbi Anabaena variabilis ATCC 294134
ASP62977 ncbi Acinetobacter sp. ADP14
ASP1667 Arthrobacter sp.3
AHYD196024 Aeromonas hydrophila dhakensis4
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C3
ACAU438753 ncbi Azorhizobium caulinodans ORS 5714
AAVE397945 ncbi Acidovorax citrulli AAC00-14
AAUR290340 ncbi Arthrobacter aurescens TC14


Names of the homologs of the genes in the group in each of these orgs
  G6478   G6476   G6219   G6217   
YPSE349747 YPSIP31758_0353YPSIP31758_0355YPSIP31758_3936YPSIP31758_3938
YPSE273123 YPTB3605YPTB3603YPTB3720YPTB3722
YPES386656 YPDSF_0231YPDSF_0233YPDSF_0109YPDSF_0107
YPES377628 YPN_3546YPN_3544YPN_3883YPN_3885
YPES360102 YPA_3637YPA_3639YPA_3288YPA_3290
YPES349746 YPANGOLA_A3693YPANGOLA_A3693YPANGOLA_A3695
YPES214092 YPO3624YPO3626YPO0184YPO0182
YPES187410 Y0245Y0243Y3965Y3963
YENT393305 YE3946YE3946YE3948
XAXO190486 XAC3198XAC3197XAC3197
XAUT78245 XAUT_1211XAUT_1210XAUT_4051XAUT_2084
VEIS391735 VEIS_4286VEIS_4284VEIS_4284VEIS_4286
UMET351160 RCIX447RCIX445RCIX445
TROS309801 TRD_0318TRD_A0251TRD_A0331
TFUS269800 TFU_1504TFU_1692TFU_1503TFU_1504
SSON300269 SSO_0939SSO_0937SSO_0345SSO_0343
SPRO399741 SPRO_1738SPRO_1736SPRO_4564SPRO_4566
SMEL266834 SMC02344SMB20571SMB21528SMB21526
SMED366394 SMED_3147SMED_4214SMED_4861SMED_4859
SHIGELLA YCBOTAUCTAUCTAUA
SFLE373384 SFV_0940SFV_0936SFV_0331SFV_0329
SFLE198214 AAN42564.1AAN42560.1AAN41912.1AAN41914.1
SERY405948 SACE_4415SACE_4434SACE_4432
SDYS300267 SDY_2320SDY_2323SDY_0503SDY_0505
SCO SCO7544SCO7544SCO6096
SBOY300268 SBO_2227SBO_0261SBO_0261SBO_0259
SAVE227882 SAV1560SAV1558SAV1558SAV1560
RSPH349102 RSPH17025_0764RSPH17025_0765RSPH17025_0761RSPH17025_0763
RSP101510 RHA1_RO07053RHA1_RO00273RHA1_RO00273RHA1_RO06848
RSOL267608 RSC1338RSC1340RSC1340RSP1383
RSAL288705 RSAL33209_2576RSAL33209_2576RSAL33209_2613
RPOM246200 SPO_0674SPO_3618SPO_0676SPO_0674
RPAL316058 RPB_1487RPB_2837RPB_1488RPB_1487
RPAL316057 RPD_0115RPD_0114RPD_0115
RPAL316055 RPE_3192RPE_3194RPE_3194RPE_3192
RPAL258594 RPA2613RPA2611RPA4162RPA2613
RMET266264 RMET_1370RMET_1372RMET_1372RMET_1370
RLEG216596 RL2770RL2768PRL100237PRL100239
RFER338969 RFER_1778RFER_1776RFER_1776RFER_1779
REUT381666 H16_A2245H16_A2243H16_B0890H16_B0888
REUT264198 REUT_A1977REUT_A1975REUT_A1470REUT_A1472
RETL347834 RHE_PC00019RHE_PC00168RHE_PC00017RHE_PC00019
RDEN375451 RD1_0984RD1_0984RD1_0982
PSYR223283 PSPTO_0350PSPTO_5315PSPTO_5321PSPTO_5319
PSYR205918 PSYR_4824PSYR_4875PSYR_4875PSYR_4876
PSTU379731 PST_1995PST_1995PST_2899
PPUT76869 PPUTGB1_0261PPUTGB1_0263PPUTGB1_0255PPUTGB1_0257
PPUT351746 PPUT_0252PPUT_0254PPUT_0246PPUT_0248
PPUT160488 PP_0237PP_0239PP_0231PP_0233
PNAP365044 PNAP_2419PNAP_2417PNAP_0040PNAP_2420
PMEN399739 PMEN_4323PMEN_4321PMEN_4330PMEN_4323
PING357804 PING_0047PING_0049PING_0049PING_0047
PFLU220664 PFL_5937PFL_5935PFL_0270PFL_0272
PFLU216595 PFLU4087PFLU5855PFLU0253PFLU0255
PFLU205922 PFL_5414PFL_5412PFL_0254PFL_0256
PENT384676 PSEEN0218PSEEN0220PSEEN0211PSEEN0213
PAER208964 PA3445PA3443PA3936PA3938
PAER208963 PA14_19540PA14_19570PA14_12960PA14_12920
OCAR504832 OCAR_4127OCAR_4126OCAR_5649
OANT439375 OANT_3592OANT_3505OANT_3507
NWIN323098 NWI_0680NWI_0683NWI_0683NWI_0674
NFAR247156 NFA11560NFA43390NFA43390NFA24440
MVAN350058 MVAN_3411MVAN_3413MVAN_0121MVAN_0122
MTHE264732 MOTH_1973MOTH_1974MOTH_1974MOTH_1973
MSP409 M446_5467M446_5130M446_4508M446_5467
MSP189918 MKMS_0114MKMS_2628MKMS_0113MKMS_0114
MSP164757 MJLS_0095MJLS_2622MJLS_0094MJLS_0095
MSP164756 MMCS_0105MMCS_2583MMCS_0104MMCS_0105
MSME246196 MSMEG_3852MSMEG_3854MSMEG_2101MSMEG_0114
MPET420662 MPE_A0114MPE_A0116MPE_A0116MPE_A0113
MMAG342108 AMB1854AMB1859AMB1855AMB1854
MLOT266835 MLL4559MLL4557MLR4519MLR4517
MKAN190192 MK0601MK0602MK0602MK0601
MGIL350054 MFLV_0723MFLV_3159MFLV_0724MFLV_0723
MEXT419610 MEXT_3409MEXT_3406MEXT_1261MEXT_3347
MAVI243243 MAV_2435MAV_2433MAV_2433MAV_3400
MAER449447 MAE_09320MAE_18890MAE_18880
MABS561007 MAB_2218MAB_2216MAB_2176MAB_2177
LMES203120 LEUM_1151LEUM_1153LEUM_1153LEUM_1151
LCAS321967 LSEI_2450LSEI_2454LSEI_2450
KRAD266940 KRAD_4421KRAD_4420KRAD_4420
KPNE272620 GKPORF_B5403GKPORF_B5401GKPORF_B4637GKPORF_B4635
JSP375286 MMA_0739MMA_0741MMA_0741MMA_2619
JSP290400 JANN_3947JANN_3947JANN_3949
HAUR316274 HAUR_2789HAUR_2787HAUR_2787HAUR_2789
GVIO251221 GLL3107GLL0173GLL0175
GURA351605 GURA_3874GURA_3884GURA_3884GURA_3874
GTHE420246 GTNG_2611GTNG_2610GTNG_2610GTNG_2611
GMET269799 GMET_1900GMET_1900GMET_1901
GBET391165 GBCGDNIH1_0257GBCGDNIH1_0539GBCGDNIH1_0539GBCGDNIH1_0257
FSP1855 FRANEAN1_3871FRANEAN1_3872FRANEAN1_1172
FSP106370 FRANCCI3_0251FRANCCI3_0250FRANCCI3_0250FRANCCI3_3571
FALN326424 FRAAL3342FRAAL3341FRAAL3341FRAAL5770
ESP42895 ENT638_1455ENT638_1453ENT638_0840ENT638_0838
EFER585054 EFER_1080EFER_1078EFER_2652EFER_2654
ECOO157 YCBOYCBMTAUCTAUA
ECOL83334 ECS1019ECS1017ECS0421ECS0419
ECOL585397 ECED1_0966ECED1_0964ECED1_0394ECED1_0392
ECOL585057 ECIAI39_2211ECIAI39_2213ECIAI39_2213ECIAI39_0316
ECOL585056 ECUMN_1132ECUMN_1130ECUMN_0407ECUMN_0405
ECOL585055 EC55989_0985EC55989_0983EC55989_0374EC55989_0372
ECOL585035 ECS88_0964ECS88_0962ECS88_0364ECS88_0362
ECOL585034 ECIAI1_0977ECIAI1_0975ECIAI1_0366ECIAI1_0364
ECOL481805 ECOLC_2660ECOLC_2662ECOLC_3261ECOLC_3263
ECOL469008 ECBD_2659ECBD_2661ECBD_3294ECBD_3296
ECOL439855 ECSMS35_2183ECSMS35_2185ECSMS35_0396ECSMS35_0394
ECOL413997 ECB_00940ECB_00938ECB_00317ECB_00315
ECOL409438 ECSE_0997ECSE_0995ECSE_0389ECSE_0387
ECOL405955 APECO1_48APECO1_46APECO1_1637APECO1_1639
ECOL364106 UTI89_C1008UTI89_C1006UTI89_C0386UTI89_C0384
ECOL362663 ECP_0948ECP_0946ECP_0430ECP_0948
ECOL331111 ECE24377A_1051ECE24377A_1036ECE24377A_0391ECE24377A_0389
ECOL316407 ECK0927:JW0919:B0936ECK0925:JW5121:B0934ECK0364:JW0359:B0367ECK0362:JW0357:B0365
ECOL199310 C1079C1077C0475C0472
ECAR218491 ECA4410ECA4412ECA1529ECA1528
DRED349161 DRED_1573DRED_1575DRED_1575DRED_1573
DHAF138119 DSY2481DSY2483DSY2483DSY2481
DARO159087 DARO_2153DARO_2152DARO_2152
CVIO243365 CV_2858CV_2856CV_2856CV_2858
CTET212717 CTC_01393CTC_01392CTC_01392CTC_01393
CSP78 CAUL_2662CAUL_2657CAUL_2657
CSP501479 CSE45_1647CSE45_4099CSE45_4101
CKLU431943 CKL_3056CKL_1037CKL_3056
CJAP155077 CJA_2256CJA_2323CJA_2257CJA_2256
CGLU196627 CG1380CG1377CG1380
CDIF272563 CD2989CD2991CD1482CD2989
CCON360104 CCC13826_1743CCC13826_1746CCC13826_1743
CBEI290402 CBEI_3332CBEI_3333CBEI_3333CBEI_3332
BXEN266265 BXE_B3031BXE_B2638BXE_B0692BXE_B0694
BVIE269482 BCEP1808_5198BCEP1808_1527BCEP1808_2980BCEP1808_2982
BTHU412694 BALH_2613BALH_2612BALH_2612BALH_2613
BTHU281309 BT9727_2664BT9727_2663BT9727_2663BT9727_2664
BTHA271848 BTH_II1469BTH_I2500BTH_II0802BTH_II0800
BSUI470137 BSUIS_B1417BSUIS_B0468BSUIS_B1419BSUIS_B1417
BSUI204722 BR_A1186BR_A0467BR_A1188BR_A1186
BSUB BSU08840BSU08850BSU08850BSU08840
BSP376 BRADO5913BRADO5911BRADO0682BRADO5913
BSP36773 BCEP18194_B1152BCEP18194_A4705BCEP18194_A6225BCEP18194_A6227
BPSE320373 BURPS668_A1350BURPS668_1822BURPS668_A2220BURPS668_A2222
BPSE320372 BURPS1710B_B2966BURPS1710B_A2148BURPS1710B_B0740BURPS1710B_B0742
BPSE272560 BPSS0928BPSL1857BPSS1572BPSS1574
BPET94624 BPET2401BPET2403BPET2905BPET2401
BPER257313 BP0913BP3675BP3703BP3674
BPAR257311 BPP1386BPP0091BPP0091BPP0090
BOVI236 GBOORFA1187GBOORFA0455GBOORFA0455GBOORFA1187
BMEL359391 BAB2_1146BAB2_0769BAB2_1148BAB2_1146
BMEL224914 BMEII0109BMEII0799BMEII0107BMEII0109
BMAL320389 BMA10247_A1012BMA10247_0780BMA10247_A0697BMA10247_A0695
BMAL320388 BMASAVP1_0286BMASAVP1_A1724BMASAVP1_A1724BMASAVP1_0286
BMAL243160 BMA_A1303BMA_1238BMA_A1580BMA_A1582
BLIC279010 BL03205BL03204BL03204BL03205
BJAP224911 BLL7011BLL7009BLL0111BLR5802
BCLA66692 ABC0598ABC0600ABC0600ABC3394
BCER572264 BCA_2995BCA_2994BCA_2994BCA_2995
BCER405917 BCE_2960BCE_2959BCE_3060BCE_2960
BCER315749 BCER98_1999BCER98_1998BCER98_1998BCER98_1999
BCER288681 BCE33L2641BCE33L2640BCE33L2748BCE33L2641
BCER226900 BC_2911BC_2910BC_2910BC_2911
BCEN331272 BCEN2424_4671BCEN2424_1563BCEN2424_2884BCEN2424_2886
BCEN331271 BCEN_3697BCEN_1083BCEN_2269BCEN_2271
BCAN483179 BCAN_B1217BCAN_B0469BCAN_B1219BCAN_B1217
BBRO257310 BB1073BB1071BB4309BB0089
BANT592021 BAA_2975BAA_2974BAA_2974BAA_2975
BANT568206 BAMEG_1683BAMEG_1684BAMEG_1684BAMEG_1683
BANT261594 GBAA2921GBAA2920GBAA2920GBAA2921
BANT260799 BAS2713BAS2712BAS2712BAS2713
BAMY326423 RBAM_009120RBAM_009130RBAM_009130RBAM_009120
BAMB398577 BAMMC406_4519BAMMC406_1485BAMMC406_1485BAMMC406_4519
BAMB339670 BAMB_4061BAMB_1464BAMB_1464BAMB_4061
BABO262698 BRUAB2_1122BRUAB2_0755BRUAB2_1124BRUAB2_1122
AVAR240292 AVA_4154AVA_4139AVA_4139AVA_4154
ASP62977 ACIAD0037ACIAD0035ACIAD0035ACIAD0038
ASP1667 ARTH_3035ARTH_3035ARTH_3780
AHYD196024 AHA_2936AHA_2938AHA_2938AHA_2936
ADEH290397 ADEH_3749ADEH_3750ADEH_3750
ACAU438753 AZC_3160AZC_3161AZC_3161AZC_3160
AAVE397945 AAVE_3045AAVE_3042AAVE_0047AAVE_3045
AAUR290340 AAUR_3088AAUR_1440AAUR_3008AAUR_3088


Organism features enriched in list (features available for 164 out of the 178 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Anthrax 0.006097844
Disease:Brucellosis 0.001685155
Disease:Bubonic_plague 0.000463566
Disease:Dysentery 0.000463566
Disease:Gastroenteritis 0.0090892813
Disease:Opportunistic_infections 0.001685155
Endospores:No 0.000013238211
Endospores:Yes 0.00013092753
GC_Content_Range4:0-40 2.798e-1916213
GC_Content_Range4:60-100 1.508e-1478145
GC_Content_Range7:0-30 0.0001119347
GC_Content_Range7:30-40 1.027e-1313166
GC_Content_Range7:40-50 0.003597122117
GC_Content_Range7:50-60 0.000018648107
GC_Content_Range7:60-70 6.737e-1270134
GC_Content_Range7:70-100 0.0022046811
Genome_Size_Range5:0-2 1.961e-251155
Genome_Size_Range5:2-4 2.717e-1123197
Genome_Size_Range5:4-6 1.223e-21101184
Genome_Size_Range5:6-10 3.383e-163947
Genome_Size_Range9:1-2 4.048e-201128
Genome_Size_Range9:2-3 1.369e-117120
Genome_Size_Range9:4-5 3.175e-64696
Genome_Size_Range9:5-6 1.519e-135588
Genome_Size_Range9:6-8 1.166e-133238
Genome_Size_Range9:8-10 0.002416479
Gram_Stain:Gram_Neg 0.0033865107333
Habitat:Aquatic 0.00015311291
Habitat:Host-associated 0.000080839206
Habitat:Multiple 8.378e-979178
Habitat:Specialized 0.0041861753
Habitat:Terrestrial 0.00024281831
Motility:No 0.000028124151
Motility:Yes 0.000043696267
Optimal_temp.:25-30 0.00103781219
Optimal_temp.:30 0.00158111015
Oxygen_Req:Anaerobic 1.752e-79102
Oxygen_Req:Facultative 0.004331669201
Shape:Coccus 0.0000439982
Shape:Rod 1.203e-12134347
Shape:Spiral 0.0008969234
Temp._range:Hyperthermophilic 0.0040014123
Temp._range:Mesophilic 0.0000150150473



Back to top


ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 405
Effective number of orgs (counting one per cluster within 468 clusters): 315

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae1
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-101
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VVUL216895 ncbi Vibrio vulnificus CMCP60
VVUL196600 ncbi Vibrio vulnificus YJ0160
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106330
VFIS312309 ncbi Vibrio fischeri ES1140
VCHO345073 ncbi Vibrio cholerae O3950
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169610
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79010
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB271
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT20
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE292459 ncbi Symbiobacterium thermophilum IAM 148631
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSP94122 ncbi Shewanella sp. ANA-30
SSP84588 ncbi Synechococcus sp. WH 81021
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSOL273057 ncbi Sulfolobus solfataricus P20
SSED425104 ncbi Shewanella sediminis HAW-EB30
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SPEA398579 ncbi Shewanella pealeana ATCC 7003450
SONE211586 ncbi Shewanella oneidensis MR-10
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SLOI323850 ncbi Shewanella loihica PV-40
SLAC55218 Ruegeria lacuscaerulensis0
SHAL458817 ncbi Shewanella halifaxensis HAW-EB40
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SGLO343509 ncbi Sodalis glossinidius morsitans0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4760
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B670
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91500
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT180
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty20
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2170
SDEG203122 ncbi Saccharophagus degradans 2-400
SBAL402882 ncbi Shewanella baltica OS1850
SBAL399599 ncbi Shewanella baltica OS1950
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99411
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170291
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.10
RSP357808 ncbi Roseiflexus sp. RS-10
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111700
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI1
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PPRO298386 ncbi Photobacterium profundum SS90
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMUL272843 ncbi Pasteurella multocida multocida Pm700
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO10
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8310
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP35761 Nocardioides sp.0
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16221
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E0
MSP400668 ncbi Marinomonas sp. MWYL10
MSP266779 ncbi Chelativorans sp. BNC10
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR394221 ncbi Maricaulis maris MCS100
MMAR267377 ncbi Methanococcus maripaludis S21
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT81
MACE188937 ncbi Methanosarcina acetivorans C2A1
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HINF71421 ncbi Haemophilus influenzae Rd KW200
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HCHE349521 ncbi Hahella chejuensis KCTC 23960
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GSUL243231 ncbi Geobacter sulfurreducens PCA1
GOXY290633 ncbi Gluconobacter oxydans 621H0
GKAU235909 ncbi Geobacillus kaustophilus HTA4260
GFOR411154 ncbi Gramella forsetii KT08030
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DRAD243230 ncbi Deinococcus radiodurans R11
DOLE96561 ncbi Desulfococcus oleovorans Hxd31
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSAL290398 ncbi Chromohalobacter salexigens DSM 30430
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29010
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB150
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/30
BWEI315730 ncbi Bacillus weihenstephanensis KBAB40
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPUM315750 ncbi Bacillus pumilus SAFR-0320
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BHAL272558 ncbi Bacillus halodurans C-1251
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP62928 ncbi Azoarcus sp. BH720
ASP232721 ncbi Acidovorax sp. JS420
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4490
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL030
APLE416269 ncbi Actinobacillus pleuropneumoniae L200
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG10
AMET293826 ncbi Alkaliphilus metalliredigens QYMF0
AMAR329726 ncbi Acaryochloris marina MBIC110171
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-11
ACRY349163 ncbi Acidiphilium cryptum JF-50
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAU360910 ncbi Bordetella avium 197N0
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3451
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G6478   G6476   G6219   G6217   
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884 XCC-B100_3580
XCAM316273 XCAORF_0952
XCAM314565
XCAM190485
WSUC273121
WPIP955
WPIP80849
VVUL216895
VVUL196600
VPAR223926
VFIS312309
VCHO345073
VCHO
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TVOL273116
TTUR377629
TTHE300852
TTHE262724 TT_C0419
TTEN273068
TSP28240
TSP1755
TPSE340099
TPET390874
TPEN368408
TPAL243276
TMAR243274
TLET416591
TKOD69014
TERY203124
TELO197221
TDEN326298
TDEN292415
TDEN243275
TCRU317025
TACI273075
SWOL335541
STYP99287
STRO369723
STOK273063
STHE322159
STHE299768
STHE292459 STH873
STHE264199
SSUI391296 SSU98_0217
SSUI391295 SSU05_0218
SSP94122
SSP84588 SYNW1416OR0360
SSP64471
SSP387093
SSP321332
SSP321327
SSOL273057
SSED425104
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SPEA398579
SONE211586
SMUT210007
SMAR399550
SLOI323850
SLAC55218
SHAL458817
SHAE279808
SGOR29390
SGLO343509
SEPI176280
SEPI176279
SENT454169
SENT321314
SENT295319
SENT220341
SENT209261
SELO269084
SDEN318161
SDEG203122
SBAL402882
SBAL399599
SARE391037
SALA317655
SAGA211110
SAGA208435
SAGA205921
SACI56780
SACI330779
RXYL266117 RXYL_2085
RTYP257363
RSPH349101 RSPH17029_3612
RSPH272943
RSP357808
RRUB269796
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFEL315456
RCON272944
RCAS383372
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PTHE370438 PTH_0235
PSP56811
PSP312153
PSP117
PRUM264731
PPRO298386
PPEN278197
PMUL272843
PMOB403833
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PLUM243265
PISL384616
PINT246198
PHOR70601
PHAL326442
PGIN242619
PFUR186497
PDIS435591
PCRY335284
PCAR338963
PATL342610
PAST100379
PARS340102
PARC259536
PAER178306
PACN267747
PABY272844
OTSU357244
OIHE221109
NSP387092
NSP35761
NSP103690
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NEUT335283
NEUR228410
NARO279238
MXAN246197 MXAN_0035
MTUB419947
MTUB336982
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSUC221988
MSP400668
MSP266779
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM1361
MMAR444158 MMARC6_1476
MMAR426368 MMARC7_0444
MMAR402880 MMARC5_0393
MMAR394221
MMAR267377 MMP1197
MLEP272631
MLAB410358
MHYO295358
MHYO262722
MHYO262719
MGEN243273
MFLO265311
MCAP340047
MCAP243233
MBUR259564 MBUR_2132
MBOV410289
MBOV233413
MART243272
MAQU351348 MAQU_3665
MACE188937 MA0064
LXYL281090
LWEL386043
LSPH444177
LSAK314315
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LPLA220668
LMON265669
LMON169963
LLAC272623
LLAC272622
LJOH257314
LINT363253
LINT267671
LINT189518
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
ILOI283942
IHOS453591
HWAL362976
HSP64091
HSOM228400
HSOM205914
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032
HMUK485914
HMOD498761
HMAR272569
HINF71421
HINF374930
HINF281310
HHEP235279
HHAL349124
HDUC233412
HCHE349521
HBUT415426 HBUT_1453
HARS204773
HACI382638
GSUL243231 GSU_1147
GOXY290633
GKAU235909
GFOR411154
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374 FSU1542
FRANT
FPHI484022
FNUC190304
FNOD381764
FMAG334413
FJOH376686
ERUM302409
ERUM254945
ELIT314225
EFAE226185
ECHA205920
ECAN269484
DVUL882
DSP255470
DSP216389
DSHI398580
DRAD243230 DR_1277
DOLE96561 DOLE_0213
DNOD246195
DETH243164
DDES207559
CVES412965
CTRA471473
CTRA471472
CTEP194439
CSUL444179
CSAL290398
CRUT413404
CPSY167879
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPER289380
CPER195103
CPER195102
CNOV386415
CMUR243161
CMAQ397948
CKOR374847 KCR_0482
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CHYD246194
CHUT269798
CHOM360107
CFET360106
CFEL264202
CEFF196164
CDIP257309
CDES477974
CCUR360105
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT536232
CBOT515621
CBOT508765
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CBLO291272
CBLO203907
CAULO
CACE272562 CAC0106
CABO218497
BWEI315730
BTUR314724
BTRI382640
BTHE226186
BSP107806
BQUI283165
BPUM315750
BLON206672
BHER314723
BHEN283166
BHAL272558 BH1209
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BBUR224326
BBAC360095
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AURANTIMONAS
ASP62928
ASP232721
ASAL382245
APLE434271
APLE416269
APHA212042
APER272557
AORE350688
ANAE240017
AMET293826
AMAR329726 AM1_2836
AMAR234826
ALAI441768
AFUL224325
AFER243159
AEHR187272 MLG_2588
ACRY349163
ACEL351607
ABUT367737
ABOR393595
ABAU360910
ABAC204669 ACID345_0825
AAEO224324


Organism features enriched in list (features available for 382 out of the 405 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.0003575417
Arrangment:Pairs 0.000640659112
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.0014862211
Disease:Wide_range_of_infections 0.00908771111
Endospores:No 0.0074525150211
Endospores:Yes 0.00411642653
GC_Content_Range4:0-40 1.229e-13179213
GC_Content_Range4:60-100 1.884e-1358145
GC_Content_Range7:0-30 0.00035984147
GC_Content_Range7:30-40 3.054e-9138166
GC_Content_Range7:40-50 0.000564791117
GC_Content_Range7:50-60 0.000069953107
GC_Content_Range7:60-70 2.698e-1057134
GC_Content_Range7:70-100 0.0001498111
Genome_Size_Range5:0-2 2.004e-25149155
Genome_Size_Range5:2-4 0.0000367150197
Genome_Size_Range5:4-6 2.527e-1775184
Genome_Size_Range5:6-10 1.184e-12847
Genome_Size_Range9:0-1 7.935e-62727
Genome_Size_Range9:1-2 4.186e-19122128
Genome_Size_Range9:2-3 0.000054396120
Genome_Size_Range9:4-5 7.437e-64496
Genome_Size_Range9:5-6 2.134e-103188
Genome_Size_Range9:6-8 8.431e-11638
Genome_Size_Range9:8-10 0.008545229
Habitat:Aquatic 0.00204227191
Habitat:Host-associated 0.0003042153206
Habitat:Multiple 3.121e-790178
Habitat:Specialized 0.00184824453
Habitat:Terrestrial 0.00033391131
Motility:Yes 0.0035948161267
Optimal_temp.:25-30 0.0003882519
Optimal_temp.:30 0.0080069515
Oxygen_Req:Anaerobic 0.000156582102
Oxygen_Req:Facultative 0.0032048118201
Shape:Rod 4.070e-7200347
Shape:Spiral 0.00006203234
Temp._range:Hyperthermophilic 0.00369922123
Temp._range:Mesophilic 6.447e-6291473
Temp._range:Thermophilic 0.00410733035



Back to top


ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 1
Effective number of orgs (counting one per cluster within 468 clusters): 1

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
MKAN190192 ncbi Methanopyrus kandleri AV19 0.00532122904


Names of the homologs of the genes in the group in each of these orgs
  G6478   G6476   G6219   G6217   
MKAN190192 MK0601MK0602MK0602MK0601


Organism features enriched in list (features available for 1 out of the 1 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Optimal_temp.:98 0.003430512



Back to top


ORGANISMS DEPLETED FOR GROUP:




Back to top


PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-981 (taurine degradation IV)106910.5741
ALKANEMONOX-PWY (two-component alkanesulfonate monooxygenase)93820.5527
P344-PWY (acrylonitrile degradation)2101270.5036
GLUCARDEG-PWY (D-glucarate degradation I)1521040.5011
GALACTARDEG-PWY (D-galactarate degradation I)1511030.4963
PWY-561 (superpathway of glyoxylate cycle)1621050.4756
GLYOXYLATE-BYPASS (glyoxylate cycle)1691060.4612
KETOGLUCONMET-PWY (ketogluconate metabolism)103770.4550
CATECHOL-ORTHO-CLEAVAGE-PWY (catechol degradation to β-ketoadipate)103770.4550
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)2121210.4532
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135910.4522
PWY-5148 (acyl-CoA hydrolysis)2271260.4514
GLUTAMINDEG-PWY (glutamine degradation I)1911130.4503
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001490.4500
SO4ASSIM-PWY (sulfate reduction I (assimilatory))3111520.4487
GLYCOLATEMET-PWY (glycolate and glyoxylate degradation I)2701390.4435
CRNFORCAT-PWY (creatinine degradation I)1911120.4426
IDNCAT-PWY (L-idonate degradation)2461310.4413
P345-PWY (aldoxime degradation)2981470.4400
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651650.4380
GALACTCAT-PWY (D-galactonate degradation)104750.4315
4-HYDROXYMANDELATE-DEGRADATION-PWY (4-hydroxymandelate degradation)102740.4307
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149940.4284
PWY-5697 (allantoin degradation to ureidoglycolate I (urea producing))92690.4278
PWY-1881 (formate oxidation to CO2)2401270.4266
PWY-6185 (4-methylcatechol degradation (ortho cleavage))107750.4185
CYANCAT-PWY (cyanate degradation)94690.4183
PWY0-823 (arginine degradation III (arginine decarboxylase/agmatinase pathway))2451270.4146
PWY-5340 (sulfate activation for sulfonation)3851660.4095
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135860.4090
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951090.4083
ALLANTOINDEG-PWY (superpathway of allantoin degradation in yeast)60510.4078
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138870.4070



Back to top


PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6476   G6219   G6217   
G64780.9997570.9994960.999605
G64760.9996710.999447
G62190.999734
G6217



Back to top


PAIRWISE BLAST SCORES:

  G6478   G6476   G6219   G6217   
G64780.0f0---
G6476-0.0f01.4e-30-
G6219-5.7e-320.0f0-
G62171.2e-8--0.0f0



Back to top


PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ABC-64-CPLX (taurine ABC transporter) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.500, average score: 1.000)
  Genes in pathway or complex:
             0.9994 0.9988 G6218 (tauB) TAUB-MONOMER (TauB)
   *in cand* 0.9997 0.9995 G6219 (tauC) TAUC-MONOMER (TauC)
   *in cand* 0.9997 0.9994 G6217 (tauA) TAUA-MONOMER (TauA)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9994 G6476 (ssuC) YCBM-MONOMER (SsuC)
   *in cand* 0.9997 0.9995 G6478 (ssuA) G6478-MONOMER (SsuA)

- ABC-56-CPLX (aliphatic sulfonate ABC transporter) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.500, average score: 1.000)
  Genes in pathway or complex:
             0.9994 0.9991 EG12358 (ssuB) YCBE-MONOMER (SsuB)
   *in cand* 0.9997 0.9994 G6476 (ssuC) YCBM-MONOMER (SsuC)
   *in cand* 0.9997 0.9995 G6478 (ssuA) G6478-MONOMER (SsuA)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9994 G6217 (tauA) TAUA-MONOMER (TauA)
   *in cand* 0.9997 0.9995 G6219 (tauC) TAUC-MONOMER (TauC)



Back to top


GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G6217 G6219 (centered at G6219)
G6476 G6478 (centered at G6478)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6478   G6476   G6219   G6217   
173/623208/623218/623197/623
AAUR290340:2:Tyes1601015251601
AAVE397945:0:Tyes2950294702950
ABAC204669:0:Tyes---0
ACAU438753:0:Tyes0110
ADEH290397:0:Tyes011-
AEHR187272:0:Tyes--0-
AHYD196024:0:Tyes0220
AMAR329726:9:Tyes---0
ASP1667:3:Tyes-00745
ASP62977:0:Tyes2003
ASP76114:1:Tyes-00-
AVAR240292:3:Tyes150015
BABO262698:0:Tno3430345343
BAMB339670:2:Tno0--0
BAMB339670:3:Tno-00-
BAMB398577:2:Tno0--0
BAMB398577:3:Tno-00-
BAMY326423:0:Tyes0110
BANT260799:0:Tno1001
BANT261594:2:Tno1001
BANT568206:2:Tyes0110
BANT592021:2:Tno1001
BBAC264462:0:Tyes-00-
BBRO257310:0:Tyes98298042600
BCAN483179:0:Tno7110713711
BCEN331271:1:Tno0---
BCEN331271:2:Tno-011941196
BCEN331272:2:Tyes0---
BCEN331272:3:Tyes-013171319
BCER226900:1:Tyes1001
BCER288681:0:Tno101081
BCER315749:1:Tyes1001
BCER405917:1:Tyes10941
BCER572264:1:Tno1001
BCLA66692:0:Tyes0222839
BHAL272558:0:Tyes0---
BJAP224911:0:Fyes6949694705736
BLIC279010:0:Tyes0110
BMAL243160:0:Tno0-266268
BMAL243160:1:Tno-0--
BMAL320388:0:Tno0--0
BMAL320388:1:Tno-00-
BMAL320389:0:Tyes307-20
BMAL320389:1:Tyes-0--
BMEL224914:0:Tno270902
BMEL359391:0:Tno3360338336
BOVI236:0:Tyes58300583
BPAR257311:0:Tno1245110
BPER257313:0:Tyes0251025352509
BPET94624:0:Tyes025110
BPSE272560:0:Tyes0-630632
BPSE272560:1:Tyes-0--
BPSE320372:0:Tno2217-02
BPSE320372:1:Tno-0--
BPSE320373:0:Tno0-863865
BPSE320373:1:Tno-0--
BSP36773:1:Tyes0---
BSP36773:2:Tyes-015441546
BSP376:0:Tyes4982498004982
BSUB:0:Tyes0110
BSUI204722:0:Tyes6810683681
BSUI470137:0:Tno8990901899
BTHA271848:0:Tno669-20
BTHA271848:1:Tno-0--
BTHU281309:1:Tno1001
BTHU412694:1:Tno1001
BVIE269482:6:Tyes0---
BVIE269482:7:Tyes-014371439
BXEN266265:1:Tyes2578019131911
CACE272562:1:Tyes---0
CBEI290402:0:Tyes0110
CCON360104:2:Tyes02-0
CDIF272563:1:Tyes1526152801526
CGLU196627:0:Tyes20-2
CJAP155077:0:Tyes06710
CKLU431943:1:Tyes20080-2008
CKOR374847:0:Tyes---0
CMET456442:0:Tyes-00-
CMIC31964:2:Tyes10--
CMIC443906:2:Tyes10--
CPEL335992:0:Tyes--02
CSP501479:6:Fyes--02
CSP501479:8:Fyes-0--
CSP78:2:Tyes500-
CTET212717:0:Tyes1001
CVIO243365:0:Tyes2002
DARO159087:0:Tyes100-
DGEO319795:1:Tyes0--0
DHAF138119:0:Tyes0220
DOLE96561:0:Tyes--0-
DPSY177439:2:Tyes-00-
DRAD243230:3:Tyes---0
DRED349161:0:Tyes0220
ECAR218491:0:Tyes2930293210
ECOL199310:0:Tno59759530
ECOL316407:0:Tno57056820
ECOL331111:6:Tno63261710
ECOL362663:0:Tno5145120514
ECOL364106:1:Tno62462220
ECOL405955:2:Tyes53853620
ECOL409438:6:Tyes62662420
ECOL413997:0:Tno63263020
ECOL439855:4:Tno1746174820
ECOL469008:0:Tno02629631
ECOL481805:0:Tno02610612
ECOL585034:0:Tno61961720
ECOL585035:0:Tno59058820
ECOL585055:0:Tno60960720
ECOL585056:2:Tno74073820
ECOL585057:0:Tno1895189718970
ECOL585397:0:Tno57156920
ECOL83334:0:Tno61661420
ECOLI:0:Tno57457220
ECOO157:0:Tno72272020
EFER585054:1:Tyes2015681570
ESP42895:1:Tyes62762520
FALN326424:0:Tyes1002373
FSP106370:0:Tyes1003318
FSP1855:0:Tyes26452646-0
FSUC59374:0:Tyes---0
GBET391165:0:Tyes02822820
GMET269799:1:Tyes-001
GSUL243231:0:Tyes---0
GTHE420246:1:Tyes1001
GURA351605:0:Tyes010100
GVIO251221:0:Tyes2968-02
HAUR316274:2:Tyes2002
HBUT415426:0:Tyes---0
JSP290400:1:Tyes-002
JSP375286:0:Tyes0221906
KPNE272620:2:Tyes75475220
KRAD266940:2:Fyes011-
LCAS321967:1:Tyes04-0
LCHO395495:0:Tyes0--0
LMES203120:1:Tyes0220
MABS561007:1:Tyes424001
MACE188937:0:Tyes--0-
MAEO419665:0:Tyes-00-
MAER449447:0:Tyes0-960959
MAQU351348:2:Tyes---0
MAVI243243:0:Tyes200964
MBAR269797:1:Tyes--01
MBUR259564:0:Tyes--0-
MEXT419610:0:Tyes2153215002092
MFLA265072:0:Tyes-0999-
MGIL350054:3:Tyes0246310
MHUN323259:0:Tyes--02069
MJAN243232:2:Tyes-00-
MKAN190192:0:Tyes0110
MLOT266835:2:Tyes343220
MMAG342108:0:Tyes0510
MMAR267377:0:Tyes--0-
MMAR368407:0:Tyes--01
MMAR402880:1:Tyes--0-
MMAR426368:0:Tyes--0-
MMAR444158:0:Tyes--0-
MMAZ192952:0:Tyes--0-
MPET420662:1:Tyes1330
MSME246196:0:Tyes3711371319740
MSP164756:1:Tno1248001
MSP164757:0:Tno1251101
MSP189918:2:Tyes1250601
MSP409:2:Tyes9536170953
MSTA339860:0:Tyes-0-160
MTHE264732:0:Tyes0110
MTHE349307:0:Tyes--10
MVAN350058:0:Tyes3257325901
MXAN246197:0:Tyes---0
NFAR247156:2:Tyes0321532151307
NWIN323098:0:Tyes6990
OANT439375:4:Tyes-8702
OCAR504832:0:Tyes101525-
PAER208963:0:Tyes52452620
PAER208964:0:Tno20493495
PENT384676:0:Tyes6802
PFLU205922:0:Tyes5228522602
PFLU216595:1:Tyes3700540502
PFLU220664:0:Tyes5567556502
PING357804:0:Tyes0220
PMEN399739:0:Tyes2092
PNAP365044:8:Tyes2396239402397
PPUT160488:0:Tno6802
PPUT351746:0:Tyes6802
PPUT76869:0:Tno6802
PSP296591:2:Tyes-00-
PSTU379731:0:Tyes-00896
PSYR205918:0:Tyes0515152
PSYR223283:2:Tyes0491049164914
PTHE370438:0:Tyes---0
RDEN375451:4:Tyes-220
RETL347834:2:Tyes215002
REUT264198:3:Tyes50250002
REUT381666:1:Tyes--20
REUT381666:2:Tyes20--
RFER338969:1:Tyes2003
RLEG216596:3:Tyes--02
RLEG216596:6:Tyes20--
RMET266264:2:Tyes0220
RPAL258594:0:Tyes2015652
RPAL316055:0:Tyes0220
RPAL316056:0:Tyes-00-
RPAL316057:0:Tyes10-1
RPAL316058:0:Tyes0135810
RPOM246200:1:Tyes0288620
RSAL288705:0:Tyes-0037
RSOL267608:0:Tyes---0
RSOL267608:1:Tyes022-
RSP101510:3:Fyes6761006556
RSPH349101:1:Tno--0-
RSPH349102:5:Tyes3402
RXYL266117:0:Tyes---0
SAUR158878:1:Tno-00-
SAUR158879:1:Tno-00-
SAUR196620:0:Tno-00-
SAUR273036:0:Tno-00-
SAUR282458:0:Tno-00-
SAUR282459:0:Tno-00-
SAUR359786:1:Tno-00-
SAUR359787:1:Tno-00-
SAUR367830:3:Tno-00-
SAUR418127:0:Tyes-00-
SAUR426430:0:Tno-00-
SAUR93061:0:Fno-00-
SAUR93062:1:Tno-00-
SAVE227882:1:Fyes2002
SBOY300268:1:Tyes1853220
SCO:2:Fyes-143814380
SDYS300267:1:Tyes1722172502
SERY405948:0:Tyes-01917
SFLE198214:0:Tyes67467002
SFLE373384:0:Tno57557120
SFUM335543:0:Tyes--5670
SHIGELLA:0:Tno676002
SMED366394:2:Tyes-0626624
SMED366394:3:Tyes0---
SMEL266834:1:Tyes-51920
SMEL266834:2:Tyes0---
SPRO399741:1:Tyes2028612863
SSAP342451:2:Tyes-00-
SSON300269:1:Tyes57257120
SSP1131:0:Tyes1-0-
SSP1148:0:Tyes--01
SSP292414:1:Tyes-00-
SSP644076:3:Fyes-00-
SSP84588:0:Tyes--0-
SSUI391295:0:Tyes---0
SSUI391296:0:Tyes---0
STHE292459:0:Tyes---0
TFUS269800:0:Tyes118801
TROS309801:0:Tyes--080
TROS309801:1:Tyes-0--
TTHE262724:1:Tyes--0-
UMET351160:0:Tyes011-
VEIS391735:1:Tyes2002
XAUT78245:1:Tyes102847878
XAXO190486:0:Tyes100-
XCAM316273:0:Tno-0--
XCAM487884:0:Tno-0--
YENT393305:1:Tyes-002
YPES187410:5:Tno2037643762
YPES214092:3:Tno3305330720
YPES349746:2:Tno-002
YPES360102:3:Tyes36036202
YPES377628:2:Tno20341343
YPES386656:2:Tno12612820
YPSE273123:2:Tno20122124
YPSE349747:2:Tno0235443546
ZMOB264203:0:Tyes01--



Back to top