CANDIDATE ID: 275

CANDIDATE ID: 275

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9961200e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    2.5000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7487 (xdhC) (b2868)
   Products of gene:
     - G7487-MONOMER (putative xanthine dehydrogenase, Fe-S subunit)
     - CPLX0-761 (xanthine dehydrogenase)
       Reactions:
        xanthine + NAD+ + H2O  ->  urate + NADH + H+
         In pathways
         URSIN-PWY (URSIN-PWY)
         P165-PWY (P165-PWY)
         PWY-5695 (PWY-5695)
         SALVADEHYPOX-PWY (salvage pathways of adenine, hypoxanthine, and their nucleosides)
         PWY-6237 (PWY-6237)
         P164-PWY (P164-PWY)
         PWY-5497 (PWY-5497)
         PWY-6538 (PWY-6538)
         PWY-6353 (PWY-6353)
         PWY-5044 (PWY-5044)
        hypoxanthine + H2O  ->  xanthine + 2 H+
         In pathways
         SALVADEHYPOX-PWY (salvage pathways of adenine, hypoxanthine, and their nucleosides)
         P164-PWY (P164-PWY)

- G7485 (xdhA) (b2866)
   Products of gene:
     - G7485-MONOMER (xanthine dehydrogenase subunit with putative molybdenum cofactor-binding domain)
     - CPLX0-761 (xanthine dehydrogenase)
       Reactions:
        xanthine + NAD+ + H2O  ->  urate + NADH + H+
         In pathways
         URSIN-PWY (URSIN-PWY)
         P165-PWY (P165-PWY)
         PWY-5695 (PWY-5695)
         SALVADEHYPOX-PWY (salvage pathways of adenine, hypoxanthine, and their nucleosides)
         PWY-6237 (PWY-6237)
         P164-PWY (P164-PWY)
         PWY-5497 (PWY-5497)
         PWY-6538 (PWY-6538)
         PWY-6353 (PWY-6353)
         PWY-5044 (PWY-5044)
        hypoxanthine + H2O  ->  xanthine + 2 H+
         In pathways
         SALVADEHYPOX-PWY (salvage pathways of adenine, hypoxanthine, and their nucleosides)
         P164-PWY (P164-PWY)

- G6157 (yagT) (b0286)
   Products of gene:
     - G6157-MONOMER (aldehyde ferredoxin oxidoreductase, Fe-S subunit)
     - CPLX0-7805 (aldehyde ferredoxin oxidoreductase)
       Reactions:
        an aldehyde[periplasmic space] + 2 oxidized ferredoxin[periplasmic space] + H2O[periplasmic space]  =  an acid[periplasmic space] + 2 reduced ferredoxin[periplasmic space] + 2 H+[periplasmic space]

- G6155 (yagR) (b0284)
   Products of gene:
     - G6155-MONOMER (aldehyde ferredoxin oxidoreductase: molybdenum cofactor-binding subunit)
     - CPLX0-7805 (aldehyde ferredoxin oxidoreductase)
       Reactions:
        an aldehyde[periplasmic space] + 2 oxidized ferredoxin[periplasmic space] + H2O[periplasmic space]  =  an acid[periplasmic space] + 2 reduced ferredoxin[periplasmic space] + 2 H+[periplasmic space]



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 181
Effective number of orgs (counting one per cluster within 468 clusters): 141

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XCAM487884 Xanthomonas campestris pv. paulliniae4
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-104
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80044
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339134
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3064
XAUT78245 ncbi Xanthobacter autotrophicus Py24
VEIS391735 ncbi Verminephrobacter eiseniae EF01-23
TTUR377629 ncbi Teredinibacter turnerae T79013
TROS309801 ncbi Thermomicrobium roseum DSM 51594
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen4
STOK273063 ncbi Sulfolobus tokodaii 74
SSP644076 Silicibacter sp. TrichCH4B4
SSP292414 ncbi Ruegeria sp. TM10404
SSON300269 ncbi Shigella sonnei Ss0463
SSOL273057 ncbi Sulfolobus solfataricus P24
SPRO399741 ncbi Serratia proteamaculans 5684
SMEL266834 ncbi Sinorhizobium meliloti 10214
SMED366394 ncbi Sinorhizobium medicae WSM4194
SMAR399550 ncbi Staphylothermus marinus F14
SLAC55218 Ruegeria lacuscaerulensis4
SHIGELLA ncbi Shigella flexneri 2a str. 2457T3
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB4
SFLE373384 ncbi Shigella flexneri 5 str. 84013
SFLE198214 ncbi Shigella flexneri 2a str. 3013
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23384
SCO ncbi Streptomyces coelicolor A3(2)4
SBOY300268 ncbi Shigella boydii Sb2273
SAVE227882 ncbi Streptomyces avermitilis MA-46804
SARE391037 ncbi Salinispora arenicola CNS-2054
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6394
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99414
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170254
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170294
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.14
RSP357808 ncbi Roseiflexus sp. RS-14
RSP101510 ncbi Rhodococcus jostii RHA14
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111703
RPOM246200 ncbi Ruegeria pomeroyi DSS-34
RPAL316058 ncbi Rhodopseudomonas palustris HaA24
RPAL316057 ncbi Rhodopseudomonas palustris BisB54
RPAL316056 ncbi Rhodopseudomonas palustris BisB184
RPAL316055 ncbi Rhodopseudomonas palustris BisA534
RPAL258594 ncbi Rhodopseudomonas palustris CGA0094
RMET266264 ncbi Ralstonia metallidurans CH343
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38414
REUT381666 ncbi Ralstonia eutropha H164
REUT264198 ncbi Ralstonia eutropha JMP1344
RDEN375451 ncbi Roseobacter denitrificans OCh 1144
RCAS383372 ncbi Roseiflexus castenholzii DSM 139414
PTHE370438 ncbi Pelotomaculum thermopropionicum SI4
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a3
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP56811 Psychrobacter sp.4
PSP296591 ncbi Polaromonas sp. JS6664
PPUT351746 ncbi Pseudomonas putida F13
PPUT160488 ncbi Pseudomonas putida KT24403
PPRO298386 ncbi Photobacterium profundum SS93
PNAP365044 ncbi Polaromonas naphthalenivorans CJ24
PMOB403833 ncbi Petrotoga mobilis SJ954
PMEN399739 ncbi Pseudomonas mendocina ymp4
PISL384616 ncbi Pyrobaculum islandicum DSM 41843
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PCRY335284 ncbi Psychrobacter cryohalolentis K54
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135143
PAER208964 ncbi Pseudomonas aeruginosa PAO13
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA143
PAER178306 ncbi Pyrobaculum aerophilum IM23
OCAR504832 ncbi Oligotropha carboxidovorans OM54
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2553
NSP35761 Nocardioides sp.4
NHAM323097 ncbi Nitrobacter hamburgensis X144
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-14
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra4
MTUB336982 ncbi Mycobacterium tuberculosis F114
MTHE264732 ncbi Moorella thermoacetica ATCC 390734
MTBRV ncbi Mycobacterium tuberculosis H37Rv4
MTBCDC ncbi Mycobacterium tuberculosis CDC15514
MSP409 Methylobacterium sp.4
MSP266779 ncbi Chelativorans sp. BNC14
MSP189918 ncbi Mycobacterium sp. KMS4
MSP164757 ncbi Mycobacterium sp. JLS4
MSP164756 ncbi Mycobacterium sp. MCS4
MSME246196 ncbi Mycobacterium smegmatis MC2 1554
MSED399549 ncbi Metallosphaera sedula DSM 53484
MMAG342108 ncbi Magnetospirillum magneticum AMB-14
MLOT266835 ncbi Mesorhizobium loti MAFF3030994
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK4
MEXT419610 ncbi Methylobacterium extorquens PA14
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P23
MBOV233413 ncbi Mycobacterium bovis AF2122/973
KRAD266940 ncbi Kineococcus radiotolerans SRS302163
JSP375286 ncbi Janthinobacterium sp. Marseille4
JSP290400 ncbi Jannaschia sp. CCS14
HNEP81032 Hyphomonas neptunium4
HMOD498761 ncbi Heliobacterium modesticaldum Ice14
HMAR272569 ncbi Haloarcula marismortui ATCC 430494
GOXY290633 ncbi Gluconobacter oxydans 621H3
GMET269799 ncbi Geobacter metallireducens GS-154
GKAU235909 ncbi Geobacillus kaustophilus HTA4263
GFOR411154 ncbi Gramella forsetii KT08034
FSP1855 Frankia sp. EAN1pec4
FJOH376686 ncbi Flavobacterium johnsoniae UW1013
FALN326424 ncbi Frankia alni ACN14a4
ELIT314225 ncbi Erythrobacter litoralis HTCC25943
EFER585054 ncbi Escherichia fergusonii ATCC 354693
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a3
ECOL585057 ncbi Escherichia coli IAI393
ECOL585056 ncbi Escherichia coli UMN0263
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S883
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-53
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL364106 ncbi Escherichia coli UTI893
ECOL362663 ncbi Escherichia coli 5363
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0733
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough3
DSHI398580 ncbi Dinoroseobacter shibae DFL 124
DRED349161 ncbi Desulfotomaculum reducens MI-14
DRAD243230 ncbi Deinococcus radiodurans R14
DPSY177439 ncbi Desulfotalea psychrophila LSv544
DHAF138119 ncbi Desulfitobacterium hafniense Y514
DGEO319795 ncbi Deinococcus geothermalis DSM 113003
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G203
CSP78 Caulobacter sp.3
CSP501479 Citreicella sp. SE454
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CPHY357809 ncbi Clostridium phytofermentans ISDg3
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3823
CMIC31964 ncbi Clavibacter michiganensis sepedonicus3
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29014
CDIF272563 ncbi Clostridium difficile 6304
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto3
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6574
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B4
CBOT498213 ncbi Clostridium botulinum B1 str. Okra3
CBOT441772 ncbi Clostridium botulinum F str. Langeland3
CBOT441771 ncbi Clostridium botulinum A str. Hall4
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193974
CBOT36826 Clostridium botulinum A4
BXEN266265 ncbi Burkholderia xenovorans LB4004
BVIE269482 ncbi Burkholderia vietnamiensis G44
BSUB ncbi Bacillus subtilis subtilis 1684
BSP376 Bradyrhizobium sp.4
BSP36773 Burkholderia sp.3
BPET94624 Bordetella petrii3
BPER257313 ncbi Bordetella pertussis Tohama I4
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1104
BHAL272558 ncbi Bacillus halodurans C-1254
BCLA66692 ncbi Bacillus clausii KSM-K164
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BBRO257310 ncbi Bordetella bronchiseptica RB504
BAMY326423 ncbi Bacillus amyloliquefaciens FZB423
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
AVAR240292 ncbi Anabaena variabilis ATCC 294134
ASP76114 ncbi Aromatoleum aromaticum EbN14
ASP1667 Arthrobacter sp.4
APER272557 ncbi Aeropyrum pernix K14
AORE350688 ncbi Alkaliphilus oremlandii OhILAs4
AMET293826 ncbi Alkaliphilus metalliredigens QYMF4
AHYD196024 Aeromonas hydrophila dhakensis3
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232704
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-13
ACRY349163 ncbi Acidiphilium cryptum JF-54
ACEL351607 ncbi Acidothermus cellulolyticus 11B4
ACAU438753 ncbi Azorhizobium caulinodans ORS 5714
ABAU360910 ncbi Bordetella avium 197N4
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3453
AAVE397945 ncbi Acidovorax citrulli AAC00-14
AAUR290340 ncbi Arthrobacter aurescens TC13


Names of the homologs of the genes in the group in each of these orgs
  G7487   G7485   G6157   G6155   
XCAM487884 XCC-B100_3252XCC-B100_1436XCC-B100_1434XCC-B100_1436
XCAM316273 XCAORF_1308XCAORF_3091XCAORF_3093XCAORF_3091
XCAM314565 XC_3156XC_1387XC_1385XC_3780
XCAM190485 XCC1093XCC2727XCC2729XCC2727
XAXO190486 XAC1189XAC2893XAC2895XAC2893
XAUT78245 XAUT_1289XAUT_1289XAUT_4210XAUT_1289
VEIS391735 VEIS_4544VEIS_5001VEIS_4544
TTUR377629 TERTU_4681TERTU_2066TERTU_4681
TROS309801 TRD_A0776TRD_A0069TRD_A0776TRD_A0400
SWOL335541 SWOL_1818SWOL_1817SWOL_1818SWOL_1817
STOK273063 ST0561ST1781ST1782ST2339
SSP644076 SCH4B_2009SCH4B_2920SCH4B_0781SCH4B_1343
SSP292414 TM1040_1766TM1040_1705TM1040_3147TM1040_1765
SSON300269 SSO_3019SSO_3017SSO_3017
SSOL273057 SSO2433SSO2639SSO2433SSO3239
SPRO399741 SPRO_2492SPRO_2301SPRO_2314SPRO_2301
SMEL266834 SMB20131SMB20132SMA2349SMA2353
SMED366394 SMED_4004SMED_4003SMED_5356SMED_5354
SMAR399550 SMAR_0356SMAR_0357SMAR_0356SMAR_0357
SLAC55218 SL1157_0407SL1157_0131SL1157_3382SL1157_0406
SHIGELLA S3070S3068S3068
SFUM335543 SFUM_2011SFUM_2012SFUM_2509SFUM_2510
SFLE373384 SFV_2933SFV_2931SFV_2931
SFLE198214 AAN44356.1AAN44354.1AAN44354.1
SERY405948 SACE_4018SACE_4872SACE_4466SACE_4468
SCO SCO2941SCO2940SCO1134SCO1132
SBOY300268 SBO_3117SBO_3119SBO_3119
SAVE227882 SAV5136SAV2067SAV1540SAV7384
SARE391037 SARE_0203SARE_0201SARE_0203SARE_0201
SACI330779 SACI_2270SACI_2271SACI_0917SACI_1009
RXYL266117 RXYL_2837RXYL_2839RXYL_1873RXYL_1872
RSPH349102 RSPH17025_1142RSPH17025_3947RSPH17025_3204RSPH17025_3206
RSPH349101 RSPH17029_1524RSPH17029_3945RSPH17029_3943RSPH17029_3945
RSPH272943 RSP_2878RSP_3206RSP_3204RSP_3206
RSP357808 ROSERS_0340ROSERS_2447ROSERS_0340ROSERS_1142
RSP101510 RHA1_RO04977RHA1_RO05013RHA1_RO00133RHA1_RO00135
RRUB269796 RRU_A0965RRU_A0965RRU_A0966
RPOM246200 SPO_A0413SPO_0830SPO_2398SPO_A0414
RPAL316058 RPB_4413RPB_4416RPB_4513RPB_4511
RPAL316057 RPD_1525RPD_1524RPD_0916RPD_0914
RPAL316056 RPC_1015RPC_1014RPC_1133RPC_1131
RPAL316055 RPE_0591RPE_3213RPE_4568RPE_3213
RPAL258594 RPA0670RPA0671RPA3803RPA0671
RMET266264 RMET_0365RMET_0364RMET_0365
RLEG216596 PRL80024PRL80025PRL120302PRL120300
REUT381666 H16_B0745H16_A3371H16_B1896H16_B1898
REUT264198 REUT_B3596REUT_A3076REUT_B4505REUT_B4507
RDEN375451 RD1_2974RD1_1533RD1_2974RD1_A0087
RCAS383372 RCAS_0843RCAS_3983RCAS_0843RCAS_3983
PTHE370438 PTH_1579PTH_1538PTH_1579PTH_1538
PSYR223283 PSPTO_4652PSPTO_2863PSPTO_2861PSPTO_2863
PSYR205918 PSYR_4285PSYR_4285PSYR_2390
PSTU379731 PST_0924PST_3082PST_0924PST_0926
PSP56811 PSYCPRWF_1007PSYCPRWF_1009PSYCPRWF_1007PSYCPRWF_1009
PSP296591 BPRO_0578BPRO_3394BPRO_0578BPRO_0577
PPUT351746 PPUT_2435PPUT_2435PPUT_2433
PPUT160488 PP_3308PP_3308PP_3310
PPRO298386 PBPRA1940PBPRA1932PBPRA1932
PNAP365044 PNAP_2695PNAP_2695PNAP_2695PNAP_2695
PMOB403833 PMOB_1735PMOB_1732PMOB_1739PMOB_1732
PMEN399739 PMEN_2347PMEN_2752PMEN_2347PMEN_2345
PISL384616 PISL_1783PISL_1780PISL_1780
PFLU216595 PFLU5350PFLU4593PFLU5350PFLU5348
PFLU205922 PFL_2109PFL_2107PFL_2109PFL_2107
PCRY335284 PCRYO_1809PCRYO_1141PCRYO_1809PCRYO_1807
PARS340102 PARS_2022PARS_2021PARS_2021
PAER208964 PA1931PA1931PA1933
PAER208963 PA14_39540PA14_39540PA14_39520
PAER178306 PAE2477PAE1935PAE1935
OCAR504832 OCAR_5618OCAR_5616OCAR_5618OCAR_5616
NWIN323098 NWI_2205NWI_1079NWI_2205
NSP35761 NOCA_4272NOCA_1634NOCA_0229NOCA_4271
NHAM323097 NHAM_1039NHAM_1454NHAM_1039NHAM_1041
MVAN350058 MVAN_5186MVAN_5281MVAN_2076MVAN_2075
MTUB419947 MRA_0383MRA_0382MRA_0383MRA_0382
MTUB336982 TBFG_10379TBFG_10378TBFG_10379TBFG_10378
MTHE264732 MOTH_1958MOTH_1960MOTH_1961MOTH_1999
MTBRV RV0374CRV0373CRV0374CRV0373C
MTBCDC MT0389MT0388MT0389MT0388
MSP409 M446_2669M446_1983M446_0292M446_0294
MSP266779 MESO_0058MESO_4559MESO_0582MESO_0580
MSP189918 MKMS_4691MKMS_0502MKMS_0449MKMS_0447
MSP164757 MJLS_4986MJLS_0480MJLS_0426MJLS_0424
MSP164756 MMCS_4603MMCS_0491MMCS_0439MMCS_0437
MSME246196 MSMEG_5883MSMEG_1291MSMEG_0686MSMEG_0684
MSED399549 MSED_0298MSED_0297MSED_0298MSED_0297
MMAG342108 AMB2882AMB2020AMB2882AMB2020
MLOT266835 MLL2289MLL4880MLR1925MLR1927
MGIL350054 MFLV_1570MFLV_1573MFLV_0282MFLV_0284
MEXT419610 MEXT_0835MEXT_1728MEXT_3665MEXT_3667
MBOV410289 BCG_0412CBCG_0411CBCG_0412C
MBOV233413 MB0381CMB0380CMB0381C
KRAD266940 KRAD_2075KRAD_2075KRAD_2075
JSP375286 MMA_0776MMA_0774MMA_0766MMA_0506
JSP290400 JANN_1763JANN_2947JANN_2096JANN_1765
HNEP81032 HNE_1073HNE_1071HNE_1073HNE_1071
HMOD498761 HM1_2646HM1_2648HM1_2646HM1_2648
HMAR272569 PNG7245PNG7246PNG7245PNG7246
GOXY290633 GOX1495GOX0653GOX1495
GMET269799 GMET_2135GMET_2136GMET_2135GMET_2136
GKAU235909 GKP18GK0379GKP18
GFOR411154 GFO_0441GFO_0443GFO_0441GFO_0443
FSP1855 FRANEAN1_4710FRANEAN1_3211FRANEAN1_3209FRANEAN1_4699
FJOH376686 FJOH_4202FJOH_4202FJOH_4200
FALN326424 FRAAL6160FRAAL6161FRAAL6160FRAAL6159
ELIT314225 ELI_00380ELI_11230ELI_11225
EFER585054 EFER_2821EFER_2819EFER_2821
ECOO157 Z4207Z4205YAGTYAGR
ECOL83334 ECS3741ECS3739ECS0316ECS0314
ECOL585397 ECED1_3328ECED1_3326ECED1_3326
ECOL585057 ECIAI39_3283ECIAI39_3281ECIAI39_3281
ECOL585056 ECUMN_3211ECUMN_3209ECUMN_0315
ECOL585055 EC55989_3155EC55989_3153EC55989_0291EC55989_0289
ECOL585035 ECS88_3147ECS88_3145ECS88_3145
ECOL585034 ECIAI1_2988ECIAI1_2986ECIAI1_0287ECIAI1_0285
ECOL481805 ECOLC_0840ECOLC_0842ECOLC_3333ECOLC_3335
ECOL469008 ECBD_0869ECBD_0871ECBD_3371ECBD_3373
ECOL439855 ECSMS35_3001ECSMS35_2999ECSMS35_2999
ECOL413997 ECB_02701ECB_02699ECB_00245ECB_00243
ECOL409438 ECSE_3132ECSE_3130ECSE_0304ECSE_0302
ECOL364106 UTI89_C3253UTI89_C3251UTI89_C3251
ECOL362663 ECP_2862ECP_2860ECP_2860
ECOL331111 ECE24377A_3193ECE24377A_3191ECE24377A_0297ECE24377A_0295
ECOL316407 ECK2864:JW2836:B2868ECK2862:JW5462:B2866ECK0285:JW0280:B0286ECK0283:JW0278:B0284
ECOL199310 C3446C3444C3444
DVUL882 DVU_1559DVU_1559DVU_1559
DSHI398580 DSHI_4201DSHI_4202DSHI_2660DSHI_2959
DRED349161 DRED_2773DRED_1504DRED_1503DRED_1504
DRAD243230 DR_A0235DR_A0231DR_A0233DR_A0231
DPSY177439 DP2532DP2531DP2532DP2531
DHAF138119 DSY0864DSY1987DSY0864DSY0865
DGEO319795 DGEO_1948DGEO_1948DGEO_2604
DDES207559 DDE_3539DDE_3539DDE_3539
CSP78 CAUL_1416CAUL_3606CAUL_1417
CSP501479 CSE45_4668CSE45_2402CSE45_5039CSE45_5041
CSAL290398 CSAL_0527CSAL_0529CSAL_0527CSAL_0529
CPHY357809 CPHY_1497CPHY_1518CPHY_1518
CMIC443906 CMM_1912CMM_1912CMM_1912
CMIC31964 CMS1318CMS1318CMS1318
CHYD246194 CHY_0691CHY_0692CHY_0691CHY_0692
CDIF272563 CD2088CD2073CD2088CD2099
CBOT536232 CLM_1446CLM_1444CLM_1444
CBOT515621 CLJ_B1335CLJ_B1333CLJ_B1335CLJ_B1333
CBOT508765 CLL_A0638CLL_A0636CLL_A0638CLL_A0636
CBOT498213 CLD_3281CLD_3283CLD_3283
CBOT441772 CLI_1372CLI_1370CLI_1370
CBOT441771 CLC_1325CLC_1323CLC_1325CLC_1323
CBOT441770 CLB_1315CLB_1313CLB_1315CLB_1313
CBOT36826 CBO1287CBO1285CBO1287CBO1285
BXEN266265 BXE_B0075BXE_B2533BXE_B2224BXE_C1225
BVIE269482 BCEP1808_3042BCEP1808_0770BCEP1808_3042BCEP1808_3040
BSUB BSU32470BSU32480BSU32470BSU32480
BSP376 BRADO6663BRADO1736BRADO2882BRADO2884
BSP36773 BCEP18194_A3925BCEP18194_B0641BCEP18194_A4471
BPET94624 BPET3936BPET3936BPET3934
BPER257313 BP0684ABP0685BP0684ABP0685
BJAP224911 BLR5209BLR6161BLR5209BLR5211
BHAL272558 BH0749BH0748BH0749BH0748
BCLA66692 ABC3740ABC3741ABC3740ABC3741
BCEN331272 BCEN2424_2955BCEN2424_2953BCEN2424_2955BCEN2424_2953
BCEN331271 BCEN_2341BCEN_2339BCEN_2341BCEN_2339
BBRO257310 BB0391BB0392BB0391BB0392
BAMY326423 RBAM_037010RBAM_037030RBAM_037030
BAMB398577 BAMMC406_2864BAMMC406_5518BAMMC406_2864BAMMC406_2862
BAMB339670 BAMB_3001BAMB_5751BAMB_3001BAMB_2999
AVAR240292 AVA_C0128AVA_C0126AVA_C0128AVA_C0126
ASP76114 EBA3604EBA3603EBA3604EBA3603
ASP1667 ARTH_2040ARTH_3420ARTH_2040ARTH_3420
APER272557 APE2213APE2216APE2213APE0708
AORE350688 CLOS_0878CLOS_0879CLOS_0376CLOS_0879
AMET293826 AMET_4570AMET_0472AMET_4570AMET_0683
AHYD196024 AHA_2179AHA_2177AHA_2177
AFER243159 AFE_2264AFE_2265AFE_2230AFE_2231
AEHR187272 MLG_1563MLG_1564MLG_1563
ACRY349163 ACRY_0511ACRY_1968ACRY_0511ACRY_0509
ACEL351607 ACEL_1637ACEL_1642ACEL_1637ACEL_1642
ACAU438753 AZC_2939AZC_4623AZC_1402AZC_1400
ABAU360910 BAV2737BAV2736BAV2737BAV2736
ABAC204669 ACID345_1931ACID345_3111ACID345_0762
AAVE397945 AAVE_3926AAVE_1129AAVE_4014AAVE_1485
AAUR290340 AAUR_3394AAUR_3394AAUR_1923


Organism features enriched in list (features available for 164 out of the 181 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00767201792
Disease:Botulism 0.001685155
Disease:Dysentery 0.007329256
Endospores:Yes 0.00097652553
GC_Content_Range4:0-40 1.538e-1718213
GC_Content_Range4:60-100 6.580e-2591145
GC_Content_Range7:30-40 2.459e-1610166
GC_Content_Range7:40-50 8.254e-615117
GC_Content_Range7:50-60 0.006315840107
GC_Content_Range7:60-70 1.713e-2183134
GC_Content_Range7:70-100 0.0022046811
Genome_Size_Range5:0-2 2.863e-223155
Genome_Size_Range5:2-4 0.000782040197
Genome_Size_Range5:4-6 3.619e-1389184
Genome_Size_Range5:6-10 2.562e-93247
Genome_Size_Range9:1-2 3.309e-173128
Genome_Size_Range9:2-3 3.881e-615120
Genome_Size_Range9:4-5 3.468e-74896
Genome_Size_Range9:5-6 0.00002954188
Genome_Size_Range9:6-8 5.181e-72538
Genome_Size_Range9:8-10 0.002416479
Habitat:Host-associated 1.118e-634206
Habitat:Multiple 7.259e-672178
Motility:No 0.002480530151
Motility:Yes 1.249e-7103267
Optimal_temp.:25-30 2.172e-81719
Oxygen_Req:Aerobic 0.000166470185
Pathogenic_in:Animal 0.0000122566
Pathogenic_in:Human 0.000019739213
Pathogenic_in:No 2.111e-688226
Shape:Branched_filament 0.006097844
Shape:Coccus 0.00107461282
Shape:Rod 7.495e-11131347
Shape:Spiral 0.0039946334



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 416
Effective number of orgs (counting one per cluster within 468 clusters): 306

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317580
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329530
YPES386656 ncbi Yersinia pestis Pestoides F0
YPES377628 ncbi Yersinia pestis Nepal5160
YPES360102 ncbi Yersinia pestis Antiqua0
YPES349746 ncbi Yersinia pestis Angola0
YPES214092 ncbi Yersinia pestis CO920
YPES187410 ncbi Yersinia pestis KIM 100
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80810
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VVUL216895 ncbi Vibrio vulnificus CMCP60
VVUL196600 ncbi Vibrio vulnificus YJ0160
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106330
VFIS312309 ncbi Vibrio fischeri ES1140
VCHO345073 ncbi Vibrio cholerae O3950
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169610
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT20
STRO369723 ncbi Salinispora tropica CNB-4400
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE292459 ncbi Symbiobacterium thermophilum IAM 148630
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP94122 ncbi Shewanella sp. ANA-30
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSED425104 ncbi Shewanella sediminis HAW-EB30
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SPEA398579 ncbi Shewanella pealeana ATCC 7003450
SONE211586 ncbi Shewanella oneidensis MR-10
SMUT210007 ncbi Streptococcus mutans UA1590
SLOI323850 ncbi Shewanella loihica PV-40
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SGLO343509 ncbi Sodalis glossinidius morsitans0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4760
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B670
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91500
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT180
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty20
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDYS300267 ncbi Shigella dysenteriae Sd1970
SDEN318161 ncbi Shewanella denitrificans OS2170
SBAL402882 ncbi Shewanella baltica OS1850
SBAL399599 ncbi Shewanella baltica OS1950
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI56780 ncbi Syntrophus aciditrophicus SB0
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFER338969 ncbi Rhodoferax ferrireducens T1181
RFEL315456 ncbi Rickettsia felis URRWXCal20
RETL347834 ncbi Rhizobium etli CFN 421
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97901
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-11
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMUL272843 ncbi Pasteurella multocida multocida Pm700
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO10
PINT246198 Prevotella intermedia 170
PING357804 ncbi Psychromonas ingrahamii 371
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PFLU220664 ncbi Pseudomonas fluorescens Pf-50
PENT384676 ncbi Pseudomonas entomophila L480
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCAR338963 ncbi Pelobacter carbinolicus DSM 23801
PATL342610 ncbi Pseudoalteromonas atlantica T6c1
PAST100379 Onion yellows phytoplasma0
PARC259536 ncbi Psychrobacter arcticus 273-40
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8310
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
MXAN246197 ncbi Myxococcus xanthus DK 16221
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E0
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP400668 ncbi Marinomonas sp. MWYL10
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM11
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT1
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785780
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HINF71421 ncbi Haemophilus influenzae Rd KW200
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GSUL243231 ncbi Geobacter sulfurreducens PCA0
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
ESP42895 Enterobacter sp.0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10430
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CVIO243365 ncbi Chromobacterium violaceum ATCC 124720
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E881
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB151
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
CABO218497 ncbi Chlamydophila abortus S26/30
BWEI315730 ncbi Bacillus weihenstephanensis KBAB40
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHU412694 ncbi Bacillus thuringiensis Al Hakam0
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-270
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSUI470137 ncbi Brucella suis ATCC 234451
BSUI204722 ncbi Brucella suis 13301
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPUM315750 ncbi Bacillus pumilus SAFR-0320
BPSE320373 ncbi Burkholderia pseudomallei 6681
BPSE320372 ncbi Burkholderia pseudomallei 1710b1
BPSE272560 ncbi Burkholderia pseudomallei K962431
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23080
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M0
BMAL320389 ncbi Burkholderia mallei NCTC 102471
BMAL320388 ncbi Burkholderia mallei SAVP10
BMAL243160 ncbi Burkholderia mallei ATCC 233441
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145800
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1020
BCER405917 Bacillus cereus W0
BCER315749 ncbi Bacillus cytotoxicus NVH 391-980
BCER288681 ncbi Bacillus cereus E33L0
BCER226900 ncbi Bacillus cereus ATCC 145791
BCAN483179 ncbi Brucella canis ATCC 233651
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02480
BANT568206 ncbi Bacillus anthracis CDC 6840
BANT261594 ncbi Bacillus anthracis Ames Ancestor0
BANT260799 ncbi Bacillus anthracis Sterne0
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9410
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP232721 ncbi Acidovorax sp. JS421
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4490
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL030
APLE416269 ncbi Actinobacillus pleuropneumoniae L200
APHA212042 ncbi Anaplasma phagocytophilum HZ0
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G7487   G7485   G6157   G6155   
ZMOB264203
YPSE349747
YPSE273123
YPES386656
YPES377628
YPES360102
YPES349746
YPES214092
YPES187410
YENT393305
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
WSUC273121
WPIP955
WPIP80849
VVUL216895
VVUL196600
VPAR223926
VFIS312309
VCHO345073
VCHO
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852
TTHE262724
TTEN273068
TSP28240
TSP1755
TPSE340099
TPET390874
TPEN368408
TPAL243276
TMAR243274
TLET416591
TKOD69014
TFUS269800
TERY203124
TELO197221
TDEN326298
TDEN292415
TDEN243275
TCRU317025
TACI273075
STYP99287
STRO369723
STHE322159
STHE299768
STHE292459
STHE264199
SSUI391296
SSUI391295
SSP94122
SSP84588
SSP64471
SSP387093
SSP321332
SSP321327
SSP1148
SSP1131
SSED425104
SSAP342451
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SPEA398579
SONE211586
SMUT210007
SLOI323850
SHAE279808
SGOR29390
SGLO343509
SEPI176280
SEPI176279
SENT454169
SENT321314
SENT295319
SENT220341
SENT209261
SELO269084
SDYS300267
SDEN318161
SBAL402882
SBAL399599
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SALA317655
SAGA211110
SAGA208435
SAGA205921
SACI56780
RTYP257363
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFER338969 RFER_0864
RFEL315456
RETL347834 RHE_CH03125
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820 PTO1120
PSP312153 PNUC_1159
PSP117
PRUM264731
PPEN278197
PMUL272843
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PLUM243265
PINT246198
PING357804 PING_1831
PHOR70601
PHAL326442
PGIN242619
PFUR186497
PFLU220664
PENT384676
PDIS435591
PCAR338963 PCAR_0220
PATL342610 PATL_2601
PAST100379
PARC259536
PACN267747
PABY272844
OTSU357244
OIHE221109
NSP387092
NSP103690
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NGON242231
NEUT335283
NEUR228410
MXAN246197 MXAN_4830
MTHE349307
MTHE187420
MSYN262723
MSUC221988
MSTA339860
MSP400668
MPUL272635
MPNE272634
MPET420662 MPE_A2930
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407
MMAR267377
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MFLA265072 MFLA_2620
MCAP340047
MCAP243233
MBUR259564
MBAR269797
MAVI243243
MART243272
MAER449447
MAEO419665
MACE188937
LXYL281090
LWEL386043
LSPH444177
LSAK314315
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LPLA220668
LMON265669
LMON169963
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT363253
LINT267671
LINT189518
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
KPNE272620
ILOI283942
IHOS453591
HSP64091
HSOM228400
HSOM205914
HSAL478009
HPYL85963
HPYL357544
HPY
HMUK485914
HINF71421
HINF374930
HINF281310
HHEP235279
HHAL349124
HDUC233412
HBUT415426
HAUR316274
HACI382638
GVIO251221
GSUL243231
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FRANT
FPHI484022
FNUC190304
FNOD381764
ESP42895
ERUM302409
ERUM254945
ECHA205920
ECAR218491
ECAN269484
DSP255470
DSP216389
DOLE96561
DNOD246195
DETH243164
CVIO243365
CVES412965
CTRA471473
CTRA471472
CTET212717 CTC_02477
CTEP194439
CSUL444179
CRUT413404
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPER289380
CPER195103
CPER195102
CPEL335992
CNOV386415
CMUR243161
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CJAP155077
CHUT269798
CHOM360107
CGLU196627
CFET360106
CFEL264202
CEFF196164
CDIP257309
CDES477974
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBLO291272
CBLO203907
CAULO CC0022
CACE272562
CABO218497
BWEI315730
BTUR314724
BTRI382640
BTHU412694
BTHU281309
BTHE226186
BSUI470137 BSUIS_A0381
BSUI204722 BR_0350
BSP107806
BQUI283165
BPUM315750
BPSE320373 BURPS668_A1007
BPSE320372 BURPS1710B_B2637
BPSE272560 BPSS0680
BOVI236
BMEL359391
BMEL224914
BMAL320389 BMA10247_A1530
BMAL320388
BMAL243160 BMA_A1154
BLON206672
BLIC279010
BHER314723
BHEN283166
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BCER572264
BCER405917
BCER315749
BCER288681
BCER226900 BC_3168
BCAN483179 BCAN_A0358
BBUR224326
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BANT592021
BANT568206
BANT261594
BANT260799
BAFZ390236
BABO262698
AYEL322098
AURANTIMONAS
ASP62977
ASP232721 AJS_3103
ASAL382245
APLE434271
APLE416269
APHA212042
ANAE240017
AMAR329726
AMAR234826
ALAI441768
AFUL224325
ADEH290397
ABUT367737
ABOR393595
AAEO224324


Organism features enriched in list (features available for 393 out of the 416 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00482717292
Arrangment:Clusters 0.00935431617
Arrangment:Filaments 0.0024159210
Endospores:No 0.0046037155211
Endospores:Yes 0.00071082553
GC_Content_Range4:0-40 4.312e-20191213
GC_Content_Range4:60-100 6.815e-2744145
GC_Content_Range7:30-40 3.442e-18153166
GC_Content_Range7:40-50 6.005e-698117
GC_Content_Range7:50-60 0.001165659107
GC_Content_Range7:60-70 3.458e-2243134
GC_Content_Range7:70-100 0.0000866111
Genome_Size_Range5:0-2 6.712e-26151155
Genome_Size_Range5:2-4 0.0000500153197
Genome_Size_Range5:4-6 5.407e-1878184
Genome_Size_Range5:6-10 1.135e-101147
Genome_Size_Range9:0-1 0.00001752727
Genome_Size_Range9:1-2 7.912e-20124128
Genome_Size_Range9:2-3 1.630e-8105120
Genome_Size_Range9:4-5 2.821e-84196
Genome_Size_Range9:5-6 6.334e-83788
Genome_Size_Range9:6-8 1.167e-8938
Genome_Size_Range9:8-10 0.006062229
Habitat:Host-associated 1.888e-8168206
Habitat:Multiple 2.519e-696178
Motility:No 0.0003245118151
Motility:Yes 5.110e-8150267
Optimal_temp.:25-30 2.632e-7219
Optimal_temp.:30-37 0.00659721718
Oxygen_Req:Aerobic 0.0000793105185
Pathogenic_in:Animal 2.109e-66066
Pathogenic_in:Human 2.367e-6168213
Pathogenic_in:No 3.870e-7125226
Shape:Coccus 0.00038746882
Shape:Irregular_coccus 0.00935431617
Shape:Rod 6.545e-12197347
Shape:Sphere 0.00048141919
Shape:Spiral 0.00079113134



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 2
Effective number of orgs (counting one per cluster within 468 clusters): 2

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
SMAR399550 ncbi Staphylothermus marinus F1 0.00417352734
APER272557 ncbi Aeropyrum pernix K1 0.00593642984


Names of the homologs of the genes in the group in each of these orgs
  G7487   G7485   G6157   G6155   
SMAR399550 SMAR_0356SMAR_0357SMAR_0356SMAR_0357
APER272557 APE2213APE2216APE2213APE0708


Organism features enriched in list (features available for 2 out of the 2 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Habitat:Specialized 0.0081225253
Optimal_temp.:90-95 0.003430511
Optimal_temp.:92 0.003430511
Temp._range:Hyperthermophilic 0.0014913223



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
TRESYN-PWY (trehalose biosynthesis I)1711050.4383
GLYSYN-THR-PWY (glycine biosynthesis IV)2151200.4279
PWY-6430 (thymine degradation)95700.4170
PWY-3982 (uracil degradation (reductive))137880.4114
P344-PWY (acrylonitrile degradation)2101160.4113



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7485   G6157   G6155   
G74870.9996260.9996790.999635
G74850.999360.99966
G61570.999712
G6155



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PAIRWISE BLAST SCORES:

  G7487   G7485   G6157   G6155   
G74870.0f0-7.6e-21-
G7485-0.0f0-1.9e-48
G6157--0.0f0-
G6155-3.6e-30-0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- SALVADEHYPOX-PWY (salvage pathways of adenine, hypoxanthine, and their nucleosides) (degree of match pw to cand: 0.182, degree of match cand to pw: 0.500, average score: 0.555)
  Genes in pathway or complex:
             0.5249 0.3831 EG10039 (amn) AMP-NUCLEOSID-MONOMER (Amn)
             0.7544 0.7060 EG10051 (apt) ADENPRIBOSYLTRAN-MONOMER (Apt)
             0.3582 0.1829 G85 (xapA) XANTHOSINEPHOSPHORY-MONOMER (XapA)
             0.3966 0.2661 EG10222 (deoD) DEOD-MONOMER (DeoD)
             0.2754 0.1885 EG10030 (add) ADENODEAMIN-MONOMER (deoxyadenosine deaminase / adenosine deaminase)
             0.4883 0.2045 EG11102 (gsk) GSK-MONOMER (Gsk)
   *in cand* 0.9997 0.9996 G7487 (xdhC) G7487-MONOMER (putative xanthine dehydrogenase, Fe-S subunit)
             0.9994 0.9991 G7486 (xdhB) G7486-MONOMER (putative xanthine dehydrogenase subunit, FAD-binding domain)
   *in cand* 0.9997 0.9994 G7485 (xdhA) G7485-MONOMER (xanthine dehydrogenase subunit with putative molybdenum cofactor-binding domain)
             0.6716 0.2894 EG20098 (hpt) HYPOXANPRIBOSYLTRAN-MONOMER (hypoxanthine-guanine phosphoribosyltransferase)
             0.5841 0.1514 EG10414 (gpt) GPT-MONOMER (Gpt)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9998 0.9996 G6155 (yagR) G6155-MONOMER (aldehyde ferredoxin oxidoreductase: molybdenum cofactor-binding subunit)
   *in cand* 0.9997 0.9994 G6157 (yagT) G6157-MONOMER (aldehyde ferredoxin oxidoreductase, Fe-S subunit)

- CPLX0-7805 (aldehyde ferredoxin oxidoreductase) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.500, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9998 0.9996 G6155 (yagR) G6155-MONOMER (aldehyde ferredoxin oxidoreductase: molybdenum cofactor-binding subunit)
             0.9995 0.9992 G6156 (yagS) G6156-MONOMER (aldehyde ferredoxin oxidoreductase, FAD-binding subunit)
   *in cand* 0.9997 0.9994 G6157 (yagT) G6157-MONOMER (aldehyde ferredoxin oxidoreductase, Fe-S subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9994 G7485 (xdhA) G7485-MONOMER (xanthine dehydrogenase subunit with putative molybdenum cofactor-binding domain)
   *in cand* 0.9997 0.9996 G7487 (xdhC) G7487-MONOMER (putative xanthine dehydrogenase, Fe-S subunit)

- CPLX0-761 (xanthine dehydrogenase) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.500, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9997 0.9996 G7487 (xdhC) G7487-MONOMER (putative xanthine dehydrogenase, Fe-S subunit)
             0.9994 0.9991 G7486 (xdhB) G7486-MONOMER (putative xanthine dehydrogenase subunit, FAD-binding domain)
   *in cand* 0.9997 0.9994 G7485 (xdhA) G7485-MONOMER (xanthine dehydrogenase subunit with putative molybdenum cofactor-binding domain)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9998 0.9996 G6155 (yagR) G6155-MONOMER (aldehyde ferredoxin oxidoreductase: molybdenum cofactor-binding subunit)
   *in cand* 0.9997 0.9994 G6157 (yagT) G6157-MONOMER (aldehyde ferredoxin oxidoreductase, Fe-S subunit)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G6155 G6157 (centered at G6157)
G7485 G7487 (centered at G7487)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7487   G7485   G6157   G6155   
198/623190/623179/623181/623
AAUR290340:2:Tyes14431443-0
AAVE397945:0:Tyes274602832353
ABAC204669:0:Tyes1176-23640
ABAU360910:0:Tyes1010
ACAU438753:0:Tyes1560327320
ACEL351607:0:Tyes0505
ACRY349163:8:Tyes2146420
AEHR187272:0:Tyes010-
AFER243159:0:Tyes343501
AHYD196024:0:Tyes20-0
AMET293826:0:Tyes406104061209
AORE350688:0:Tyes4984990499
APER272557:0:Tyes1569157215690
ASP1667:3:Tyes0139701397
ASP232721:2:Tyes-0--
ASP62928:0:Tyes02239--
ASP76114:2:Tyes1010
AVAR240292:1:Tyes2020
BAMB339670:1:Tno-0--
BAMB339670:3:Tno2-20
BAMB398577:1:Tno-0--
BAMB398577:3:Tno2-20
BAMY326423:0:Tyes02-2
BBRO257310:0:Tyes0101
BCAN483179:1:Tno-0--
BCEN331271:2:Tno2020
BCEN331272:3:Tyes2020
BCER226900:1:Tyes-0--
BCLA66692:0:Tyes0101
BHAL272558:0:Tyes1010
BJAP224911:0:Fyes096102
BMAL243160:0:Tno--0-
BMAL320389:0:Tyes--0-
BPAR257311:0:Tno0-0-
BPER257313:0:Tyes0101
BPET94624:0:Tyes2-20
BPSE272560:0:Tyes--0-
BPSE320372:0:Tno--0-
BPSE320373:0:Tno--0-
BSP36773:1:Tyes--0-
BSP36773:2:Tyes-0-561
BSP376:0:Tyes4680010811083
BSUB:0:Tyes0101
BSUI204722:1:Tyes-0--
BSUI470137:1:Tno-0--
BTHA271848:0:Tno--0-
BTHA271848:1:Tno-0--
BVIE269482:7:Tyes2251022512249
BXEN266265:0:Tyes---0
BXEN266265:1:Tyes23990304-
CAULO:0:Tyes0---
CBEI290402:0:Tyes30--
CBOT36826:1:Tno2020
CBOT441770:0:Tyes2020
CBOT441771:0:Tno2020
CBOT441772:1:Tno20-0
CBOT498213:1:Tno20-0
CBOT508765:1:Tyes2020
CBOT515621:2:Tyes2020
CBOT536232:0:Tno20-0
CDIF272563:1:Tyes1501526
CHYD246194:0:Tyes0101
CMIC31964:2:Tyes00-0
CMIC443906:2:Tyes00-0
CPHY357809:0:Tyes021-21
CPSY167879:0:Tyes-44600-
CSAL290398:0:Tyes0202
CSP501479:4:Fyes--02
CSP501479:5:Fyes0---
CSP501479:8:Fyes-0--
CSP78:2:Tyes0-22141
CTET212717:0:Tyes-0--
DARO159087:0:Tyes0-0-
DDES207559:0:Tyes00-0
DGEO319795:0:Tyes---0
DGEO319795:1:Tyes0-0-
DHAF138119:0:Tyes0114601
DPSY177439:2:Tyes1010
DRAD243230:2:Tyes4020
DRED349161:0:Tyes1275101
DSHI398580:0:Tyes01--
DSHI398580:5:Tyes--0300
DVUL882:1:Tyes00-0
ECOL199310:0:Tno20-0
ECOL316407:0:Tno2587258520
ECOL331111:6:Tno2776277420
ECOL362663:0:Tno20-0
ECOL364106:1:Tno20-0
ECOL405955:2:Tyes-0-0
ECOL409438:6:Tyes2882288020
ECOL413997:0:Tno2470246820
ECOL439855:4:Tno20-0
ECOL469008:0:Tno0224862488
ECOL481805:0:Tno0225032505
ECOL585034:0:Tno2672267020
ECOL585035:0:Tno20-0
ECOL585055:0:Tno2835283320
ECOL585056:2:Tno29142912-0
ECOL585057:0:Tno20-0
ECOL585397:0:Tno20-0
ECOL83334:0:Tno3507350520
ECOLI:0:Tno2643264120
ECOO157:0:Tno3524352220
EFAE226185:3:Tyes00--
EFER585054:1:Tyes-202
ELIT314225:0:Tyes0-22002199
FALN326424:0:Tyes1210
FJOH376686:0:Tyes2-20
FMAG334413:1:Tyes-0-0
FSP106370:0:Tyes0--1
FSP1855:0:Tyes1464201453
GFOR411154:0:Tyes0202
GKAU235909:0:Tyes0-0-
GKAU235909:1:Tyes-0--
GMET269799:1:Tyes0101
GOXY290633:5:Tyes8330833-
GTHE420246:1:Tyes02--
GURA351605:0:Tyes-00-
HARS204773:0:Tyes0-0-
HCHE349521:0:Tyes--37870
HMAR272569:7:Tyes0101
HMOD498761:0:Tyes0202
HNEP81032:0:Tyes2020
HWAL362976:1:Tyes0-0-
JSP290400:1:Tyes012063382
JSP375286:0:Tyes2772752670
KRAD266940:2:Fyes00-0
LCHO395495:0:Tyes2327-0-
MABS561007:1:Tyes-0-0
MAQU351348:2:Tyes0-0-
MBOV233413:0:Tno101-
MBOV410289:0:Tno101-
MEXT419610:0:Tyes091028402842
MFLA265072:0:Tyes--0-
MGIL350054:3:Tyes1288129102
MLOT266835:2:Tyes275228302
MMAG342108:0:Tyes86208620
MPET420662:1:Tyes--0-
MSED399549:0:Tyes1010
MSME246196:0:Tyes515360620
MSP164756:1:Tno41915420
MSP164757:0:Tno45595620
MSP189918:2:Tyes42625520
MSP266779:1:Tyes-0--
MSP266779:3:Tyes0-526524
MSP409:2:Tyes2264159502
MTBCDC:0:Tno1010
MTBRV:0:Tno1010
MTHE264732:0:Tyes02339
MTUB336982:0:Tno1010
MTUB419947:0:Tyes1010
MVAN350058:0:Tyes3104319910
MXAN246197:0:Tyes--0-
NARO279238:0:Tyes1612-0-
NFAR247156:2:Tyes-0-0
NHAM323097:2:Tyes039102
NSP35761:1:Tyes4039139304038
NWIN323098:0:Tyes113901139-
OANT439375:5:Tyes-0-0
OCAR504832:0:Tyes2020
PAER178306:0:Tyes4100-0
PAER208963:0:Tyes2-20
PAER208964:0:Tno0-02
PARS340102:0:Tyes10-0
PATL342610:0:Tyes--0-
PCAR338963:0:Tyes--0-
PCRY335284:1:Tyes6640664662
PFLU205922:0:Tyes2020
PFLU216595:1:Tyes7320732730
PING357804:0:Tyes--0-
PISL384616:0:Tyes30-0
PMEN399739:0:Tyes241520
PMOB403833:0:Tyes3070
PNAP365044:8:Tyes0000
PPRO298386:2:Tyes80-0
PPUT160488:0:Tno0-02
PPUT351746:0:Tyes2-20
PPUT76869:0:Tno0-0-
PSP296591:2:Tyes1280410
PSP312153:0:Tyes0---
PSP56811:2:Tyes0202
PSTU379731:0:Tyes0214302
PSYR205918:0:Tyes1908-19080
PSYR223283:2:Tyes1768202
PTHE370438:0:Tyes410410
PTOR263820:0:Tyes0---
RCAS383372:0:Tyes0309903099
RDEN375451:3:Tyes---0
RDEN375451:4:Tyes134801348-
RETL347834:5:Tyes-0--
REUT264198:2:Tyes0-905907
REUT264198:3:Tyes-0--
REUT381666:1:Tyes0-11361138
REUT381666:2:Tyes-0--
RFER338969:1:Tyes--0-
RLEG216596:0:Tyes01--
RLEG216596:5:Tyes--20
RMET266264:2:Tyes101-
RPAL258594:0:Tyes0131501
RPAL316055:0:Tyes0259939392599
RPAL316056:0:Tyes10117115
RPAL316057:0:Tyes61561420
RPAL316058:0:Tyes039896
RPOM246200:0:Tyes0--1
RPOM246200:1:Tyes-01535-
RRUB269796:1:Tyes0-01
RSOL267608:1:Tyes0-0-
RSP101510:3:Fyes4825486102
RSP357808:0:Tyes020860793
RSPH272943:3:Tyes-202
RSPH272943:4:Tyes0---
RSPH349101:1:Tno-202
RSPH349101:2:Tno0---
RSPH349102:4:Tyes-71302
RSPH349102:5:Tyes0---
RXYL266117:0:Tyes95395510
SACI330779:0:Tyes13041305090
SARE391037:0:Tyes2020
SAVE227882:1:Fyes365253005930
SBOY300268:1:Tyes02-2
SCO:2:Fyes1833183220
SDEG203122:0:Tyes0-0-
SERY405948:0:Tyes0849446448
SFLE198214:0:Tyes20-0
SFLE373384:0:Tno20-0
SFUM335543:0:Tyes01493494
SHAL458817:0:Tyes-0-0
SHIGELLA:0:Tno20-0
SLAC55218:1:Fyes27303188272
SMAR399550:0:Tyes0101
SMED366394:1:Tyes--10
SMED366394:2:Tyes10--
SMEL266834:0:Tyes--02
SMEL266834:1:Tyes01--
SPRO399741:1:Tyes1910130
SSOL273057:0:Tyes01810752
SSON300269:1:Tyes20-0
SSP292414:1:Tyes--0-
SSP292414:2:Tyes620-61
SSP644076:4:Fyes--0-
SSP644076:6:Fyes-0--
SSP644076:7:Fyes654--0
STOK273063:0:Tyes0132913301914
SWOL335541:0:Tyes1010
TROS309801:0:Tyes7070707331
TTUR377629:0:Tyes236702367-
VEIS391735:1:Tyes04480-
XAUT78245:1:Tyes0029320
XAXO190486:0:Tyes0170417061704
XCAM190485:0:Tyes0163416361634
XCAM314565:0:Tno1773202409
XCAM316273:0:Tno0175317551753
XCAM487884:0:Tno1838202



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