CANDIDATE ID: 277

CANDIDATE ID: 277

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9956917e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7665 (lptA) (b3200)
   Products of gene:
     - YHBN-MONOMER (LptA)
     - ABC-53-CPLX (LptABCFG ABC transporter)

- G7663 (kdsC) (b3198)
   Products of gene:
     - G7663-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer)
     - KDO-8PPHOSPHAT-CPLX (3-deoxy-D-manno-octulosonate 8-phosphate phosphatase)
       Reactions:
        3-deoxy-D-manno-octulosonate 8-P + H2O  ->  3-deoxy-D-manno-octulosonate + phosphate
         In pathways
         LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)
         KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)
         PWY-5111 (PWY-5111)
         PWY-1269 (CMP-KDO biosynthesis I)

- G7662 (kdsD) (b3197)
   Products of gene:
     - G7662-MONOMER (D-arabinose 5-phosphate isomerase)
     - CPLX0-1262 (D-arabinose 5-phosphate isomerase)
       Reactions:
        D-arabinose 5-phosphate  =  D-ribulose-5-phosphate
         In pathways
         LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)
         KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)
         PWY-1269 (CMP-KDO biosynthesis I)

- EG12801 (mlaF) (b3195)
   Products of gene:
     - YRBF-MONOMER (MlaF)
     - ABC-45-CPLX (phospholipid ABC transporter)



Back to top


ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 225
Effective number of orgs (counting one per cluster within 468 clusters): 155

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A4
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110184
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103314
XFAS405440 ncbi Xylella fastidiosa M124
XFAS183190 ncbi Xylella fastidiosa Temecula14
XFAS160492 ncbi Xylella fastidiosa 9a5c4
XCAM487884 Xanthomonas campestris pv. paulliniae4
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-104
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80044
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339134
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3064
WSUC273121 ncbi Wolinella succinogenes DSM 17403
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106333
VFIS312309 ncbi Vibrio fischeri ES1144
VEIS391735 ncbi Verminephrobacter eiseniae EF01-24
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TTUR377629 ncbi Teredinibacter turnerae T79013
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12513
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252594
TCRU317025 ncbi Thiomicrospira crunogena XCL-24
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
SSP94122 ncbi Shewanella sp. ANA-34
SSP644076 Silicibacter sp. TrichCH4B3
SSP387093 ncbi Sulfurovum sp. NBC37-13
SSP292414 ncbi Ruegeria sp. TM10403
SSON300269 ncbi Shigella sonnei Ss0464
SSED425104 ncbi Shewanella sediminis HAW-EB34
SPRO399741 ncbi Serratia proteamaculans 5684
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-14
SLOI323850 ncbi Shewanella loihica PV-44
SLAC55218 Ruegeria lacuscaerulensis3
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB3
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SELO269084 ncbi Synechococcus elongatus PCC 63013
SDYS300267 ncbi Shigella dysenteriae Sd1974
SDEN318161 ncbi Shewanella denitrificans OS2174
SDEG203122 ncbi Saccharophagus degradans 2-403
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
SACI56780 ncbi Syntrophus aciditrophicus SB4
RSOL267608 ncbi Ralstonia solanacearum GMI10004
RPAL316055 ncbi Rhodopseudomonas palustris BisA533
RMET266264 ncbi Ralstonia metallidurans CH343
RFER338969 ncbi Rhodoferax ferrireducens T1183
REUT381666 ncbi Ralstonia eutropha H163
REUT264198 ncbi Ralstonia eutropha JMP1343
RETL347834 ncbi Rhizobium etli CFN 423
RDEN375451 ncbi Roseobacter denitrificans OCh 1143
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP56811 Psychrobacter sp.3
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-13
PSP296591 ncbi Polaromonas sp. JS6664
PSP117 Pirellula sp.3
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS94
PNAP365044 ncbi Polaromonas naphthalenivorans CJ24
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PMEN399739 ncbi Pseudomonas mendocina ymp4
PLUT319225 ncbi Chlorobium luteolum DSM 2733
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 374
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PGIN242619 ncbi Porphyromonas gingivalis W833
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PCRY335284 ncbi Psychrobacter cryohalolentis K53
PCAR338963 ncbi Pelobacter carbinolicus DSM 23804
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PARC259536 ncbi Psychrobacter arcticus 273-43
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
NSP387092 ncbi Nitratiruptor sp. SB155-23
NOCE323261 ncbi Nitrosococcus oceani ATCC 197074
NMUL323848 ncbi Nitrosospira multiformis ATCC 251963
NMEN374833 ncbi Neisseria meningitidis 0534424
NMEN272831 ncbi Neisseria meningitidis FAM184
NMEN122587 ncbi Neisseria meningitidis Z24914
NMEN122586 ncbi Neisseria meningitidis MC584
NGON242231 ncbi Neisseria gonorrhoeae FA 10904
MXAN246197 ncbi Myxococcus xanthus DK 16223
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSP400668 ncbi Marinomonas sp. MWYL14
MPET420662 ncbi Methylibium petroleiphilum PM14
MFLA265072 ncbi Methylobacillus flagellatus KT4
MCAP243233 ncbi Methylococcus capsulatus Bath4
MAQU351348 ncbi Marinobacter aquaeolei VT84
LPNE400673 ncbi Legionella pneumophila Corby4
LPNE297246 ncbi Legionella pneumophila Paris4
LPNE297245 ncbi Legionella pneumophila Lens4
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 14
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-003
LCHO395495 ncbi Leptothrix cholodnii SP-64
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP375286 ncbi Janthinobacterium sp. Marseille4
JSP290400 ncbi Jannaschia sp. CCS13
ILOI283942 ncbi Idiomarina loihiensis L2TR4
HSOM228400 ncbi Haemophilus somnus 23364
HSOM205914 ncbi Haemophilus somnus 129PT4
HNEP81032 Hyphomonas neptunium3
HINF71421 ncbi Haemophilus influenzae Rd KW204
HINF374930 ncbi Haemophilus influenzae PittEE4
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HHEP235279 ncbi Helicobacter hepaticus ATCC 514493
HHAL349124 ncbi Halorhodospira halophila SL14
HDUC233412 ncbi Haemophilus ducreyi 35000HP4
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HARS204773 ncbi Herminiimonas arsenicoxydans4
GURA351605 ncbi Geobacter uraniireducens Rf44
GSUL243231 ncbi Geobacter sulfurreducens PCA4
GMET269799 ncbi Geobacter metallireducens GS-154
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-003
FTUL418136 ncbi Francisella tularensis tularensis WY96-34183
FTUL401614 ncbi Francisella novicida U1123
FTUL393115 ncbi Francisella tularensis tularensis FSC1983
FTUL393011 ncbi Francisella tularensis holarctica OSU183
FTUL351581 Francisella tularensis holarctica FSC2003
FRANT ncbi Francisella tularensis tularensis SCHU S43
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250173
FJOH376686 ncbi Flavobacterium johnsoniae UW1013
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough3
DSHI398580 ncbi Dinoroseobacter shibae DFL 123
DPSY177439 ncbi Desulfotalea psychrophila LSv543
DOLE96561 ncbi Desulfococcus oleovorans Hxd33
DNOD246195 ncbi Dichelobacter nodosus VCS1703A3
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G203
DARO159087 ncbi Dechloromonas aromatica RCB4
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CTEP194439 ncbi Chlorobium tepidum TLS3
CSP501479 Citreicella sp. SE454
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)3
CPSY167879 ncbi Colwellia psychrerythraea 34H4
CJAP155077 Cellvibrio japonicus4
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3813
CCON360104 ncbi Campylobacter concisus 138263
CCHL340177 ncbi Chlorobium chlorochromatii CaD33
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1114
CBUR360115 ncbi Coxiella burnetii RSA 3314
CBUR227377 ncbi Coxiella burnetii RSA 4934
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTHA271848 ncbi Burkholderia thailandensis E2644
BSP36773 Burkholderia sp.4
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii3
BPER257313 ncbi Bordetella pertussis Tohama I3
BPAR257311 ncbi Bordetella parapertussis 128223
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BBRO257310 ncbi Bordetella bronchiseptica RB503
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1003
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
ASP76114 ncbi Aromatoleum aromaticum EbN14
ASP62977 ncbi Acinetobacter sp. ADP14
ASP62928 ncbi Azoarcus sp. BH724
ASP232721 ncbi Acidovorax sp. JS423
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AMAR329726 ncbi Acaryochloris marina MBIC110173
AHYD196024 Aeromonas hydrophila dhakensis4
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232704
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C3
ABOR393595 ncbi Alcanivorax borkumensis SK23
ABAU360910 ncbi Bordetella avium 197N3
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3453
AAVE397945 ncbi Acidovorax citrulli AAC00-14
AAEO224324 ncbi Aquifex aeolicus VF54


Names of the homologs of the genes in the group in each of these orgs
  G7665   G7663   G7662   EG12801   
YPSE349747 YPSIP31758_0443YPSIP31758_0445YPSIP31758_0446YPSIP31758_0448
YPSE273123 YPTB3524YPTB3522YPTB3521YPTB3519
YPES386656 YPDSF_0317YPDSF_0319YPDSF_0320YPDSF_0322
YPES377628 YPN_3462YPN_3460YPN_3459YPN_3457
YPES360102 YPA_3723YPA_3725YPA_3726YPA_3728
YPES349746 YPANGOLA_A1151YPANGOLA_A1149YPANGOLA_A1148YPANGOLA_A1146
YPES214092 YPO3580YPO3578YPO3577YPO3575
YPES187410 Y0152Y0150Y0149Y0146
YENT393305 YE3757YE3755YE3754YE3752
XORY360094 XOOORF_4032XOOORF_4030XOOORF_4029XOOORF_5078
XORY342109 XOO1185XOO1187XOO1188XOO0281
XORY291331 XOO1286XOO1288XOO1289XOO0310
XFAS405440 XFASM12_0758XFASM12_0760XFASM12_0761XFASM12_1816
XFAS183190 PD_0639PD_0641PD_0642PD_1654
XFAS160492 XF1410XF1412XF1413XF0421
XCAM487884 XCC-B100_1360XCC-B100_1362XCC-B100_1363XCC-B100_4427
XCAM316273 XCAORF_3171XCAORF_3169XCAORF_3168XCAORF_4551
XCAM314565 XC_1313XC_1315XC_1316XC_4296
XCAM190485 XCC2800XCC2798XCC2797XCC4207
XAXO190486 XAC2970XAC2968XAC2967XAC4339
WSUC273121 WS2069WS0067WS0110
VVUL216895 VV1_0690VV1_0688VV1_0687VV1_0685
VVUL196600 VV0450VV0452VV0453VV0455
VPAR223926 VP2668VP2666VP2664
VFIS312309 VF0389VF0391VF0392VF0394
VEIS391735 VEIS_0576VEIS_0153VEIS_0154VEIS_2397
VCHO345073 VC0395_A2107VC0395_A2105VC0395_A2104VC0395_A2102
VCHO VC2527VC2524VC2523VC2520
TTUR377629 TERTU_3819TERTU_3817TERTU_3816
TDEN326298 TMDEN_1079TMDEN_0213TMDEN_1527
TDEN292415 TBD_0535TBD_0537TBD_0538TBD_1900
TCRU317025 TCR_0974TCR_0976TCR_0503TCR_0979
STYP99287 STM3318STM3316STM3315STM3313
SSP94122 SHEWANA3_0674SHEWANA3_0676SHEWANA3_0677SHEWANA3_0678
SSP644076 SCH4B_3386SCH4B_0239SCH4B_1992
SSP387093 SUN_1226SUN_2364SUN_1358
SSP292414 TM1040_0025TM1040_3854TM1040_1781
SSON300269 SSO_3348SSO_3346SSO_3345SSO_3343
SSED425104 SSED_0728SSED_0730SSED_0731SSED_0733
SPRO399741 SPRO_4365SPRO_4363SPRO_4362SPRO_4360
SPEA398579 SPEA_3614SPEA_3612SPEA_3611SPEA_3609
SONE211586 SO_3959SO_3957SO_3956SO_3954
SLOI323850 SHEW_3309SHEW_3307SHEW_3306SHEW_3304
SLAC55218 SL1157_0839SL1157_0841SL1157_2673
SHIGELLA YHBNYRBIYRBHVPSA
SHAL458817 SHAL_3703SHAL_3701SHAL_3700SHAL_3698
SGLO343509 SG0201SG0203SG0204SG0205
SFUM335543 SFUM_2073SFUM_0006SFUM_0401
SFLE373384 SFV_3230SFV_3228SFV_3227SFV_3225
SFLE198214 AAN44706.1AAN44704.1AAN44703.1AAN44701.1
SENT454169 SEHA_C3615SEHA_C3613SEHA_C3612SEHA_C3610
SENT321314 SCH_3256SCH_3254SCH_3253SCH_3251
SENT295319 SPA3185SPA3183SPA3182SPA3180
SENT220341 STY3497STY3495STY3494STY3492
SENT209261 T3235T3233T3232T3230
SELO269084 SYC1812_DSYC1809_DSYC1163_C
SDYS300267 SDY_3381SDY_3379SDY_3378SDY_3376
SDEN318161 SDEN_0491SDEN_0493SDEN_0494SDEN_0496
SDEG203122 SDE_3177SDE_3175SDE_3174
SBOY300268 SBO_3182SBO_3184SBO_3185SBO_3187
SBAL402882 SHEW185_0688SHEW185_0690SHEW185_0691SHEW185_0692
SBAL399599 SBAL195_0718SBAL195_0720SBAL195_0721SBAL195_0722
SACI56780 SYN_00947SYN_00949SYN_00471SYN_00410
RSOL267608 RSC0410RSC0412RSC0413RSC2962
RPAL316055 RPE_4240RPE_0696RPE_1472
RMET266264 RMET_0305RMET_0307RMET_3259
RFER338969 RFER_4236RFER_4237RFER_2935
REUT381666 H16_A0389H16_A0391H16_A3427
REUT264198 REUT_A0357REUT_A0359REUT_A3122
RETL347834 RHE_CH00402RHE_CH03559RHE_CH02348
RDEN375451 RD1_0370RD1_0368RD1_3243
PSYR223283 PSPTO_4451PSPTO_4449PSPTO_4448PSPTO_4447
PSYR205918 PSYR_4145PSYR_4143PSYR_4142PSYR_4141
PSTU379731 PST_1033PST_1035PST_1036PST_1037
PSP56811 PSYCPRWF_0825PSYCPRWF_0823PSYCPRWF_0822
PSP312153 PNUC_1908PNUC_1907PNUC_0096
PSP296591 BPRO_4487BPRO_4897BPRO_4898BPRO_0793
PSP117 RB9821RB9823RB7134
PPUT76869 PPUTGB1_0961PPUTGB1_0963PPUTGB1_0964PPUTGB1_0965
PPUT351746 PPUT_0993PPUT_0995PPUT_0996PPUT_0997
PPUT160488 PP_0954PP_0956PP_0957PP_0958
PPRO298386 PBPRA3253PBPRA3251PBPRA3250PBPRA3248
PNAP365044 PNAP_3708PNAP_4107PNAP_4108PNAP_0685
PMUL272843 PM0172PM0524PM0525PM0174
PMEN399739 PMEN_0872PMEN_0874PMEN_0875PMEN_0876
PLUT319225 PLUT_1275PLUT_1747PLUT_0441
PLUM243265 PLU4039PLU4037PLU4036PLU4034
PING357804 PING_2890PING_2888PING_0617PING_2887
PHAL326442 PSHAA2549PSHAA2547PSHAA2546PSHAA2544
PGIN242619 PG_0658PG_0087PG_1034
PFLU220664 PFL_0917PFL_0919PFL_0920PFL_0921
PFLU216595 PFLU0884PFLU0886PFLU0887PFLU0888
PFLU205922 PFL_0859PFL_0861PFL_0862PFL_0863
PENT384676 PSEEN1095PSEEN1097PSEEN1098PSEEN1099
PCRY335284 PCRYO_1489PCRYO_1491PCRYO_1492
PCAR338963 PCAR_1940PCAR_1942PCAR_1943PCAR_2750
PATL342610 PATL_0566PATL_0564PATL_0563PATL_0561
PARC259536 PSYC_0925PSYC_0923PSYC_0922
PAER208964 PA4460PA4458PA4457PA4456
PAER208963 PA14_57920PA14_57900PA14_57890PA14_57880
NSP387092 NIS_0778NIS_0063NIS_1034
NOCE323261 NOC_2791NOC_2789NOC_2788NOC_2786
NMUL323848 NMUL_A0086NMUL_A0088NMUL_A2749
NMEN374833 NMCC_1787NMCC_1789NMCC_1790NMCC_0249
NMEN272831 NMC1813NMC1815NMC1816NMC1938
NMEN122587 NMA2132NMA2134NMA2135NMA0485
NMEN122586 NMB_0355NMB_0353NMB_0352NMB_1966
NGON242231 NGO1606NGO1608NGO1609NGO2116
MXAN246197 MXAN_1094MXAN_5923MXAN_3718
MSUC221988 MS1715MS0995MS0996MS1713
MSP400668 MMWYL1_2416MMWYL1_1125MMWYL1_1123MMWYL1_2413
MPET420662 MPE_A0150MPE_A3808MPE_A3809MPE_A3101
MFLA265072 MFLA_0140MFLA_0138MFLA_0137MFLA_0237
MCAP243233 MCA_0743MCA_0745MCA_0746MCA_1969
MAQU351348 MAQU_2713MAQU_2711MAQU_2710MAQU_2709
LPNE400673 LPC_2458LPC_2456LPC_2455LPC_2454
LPNE297246 LPP0899LPP0901LPP0902LPP0903
LPNE297245 LPL0868LPL0870LPL0871LPL0872
LPNE272624 LPG0837LPG0839LPG0840LPG0841
LINT363253 LI0453LI0083LI0232
LCHO395495 LCHO_4227LCHO_0183LCHO_0182LCHO_3394
KPNE272620 GKPORF_B2945GKPORF_B2943GKPORF_B2942GKPORF_B2940
JSP375286 MMA_3350MMA_3348MMA_3347MMA_3299
JSP290400 JANN_0226JANN_0073JANN_1737
ILOI283942 IL0398IL0400IL0401IL0403
HSOM228400 HSM_1592HSM_1397HSM_1396HSM_1590
HSOM205914 HS_1175HS_0919HS_0918HS_1173
HNEP81032 HNE_0204HNE_1024HNE_2920
HINF71421 HI_1149HI_1679HI_1678HI_1087
HINF374930 CGSHIEE_06300CGSHIEE_03665CGSHIEE_03670CGSHIEE_06630
HINF281310 NTHI1317NTHI1982NTHI1981NTHI1250
HHEP235279 HH_1328HH_1326HH_1172
HHAL349124 HHAL_2124HHAL_2122HHAL_2121HHAL_2120
HDUC233412 HD_0587HD_0297HD_1168HD_0259
HCHE349521 HCH_05318HCH_05316HCH_05315HCH_05314
HARS204773 HEAR3107HEAR3105HEAR3104HEAR3080
GURA351605 GURA_2974GURA_2976GURA_2977GURA_1040
GSUL243231 GSU_1889GSU_1892GSU_1893GSU_0816
GMET269799 GMET_1281GMET_1279GMET_1278GMET_0787
FTUL458234 FTA_1121FTA_1521FTA_0546
FTUL418136 FTW_0934FTW_0585FTW_0326
FTUL401614 FTN_0905FTN_1222FTN_0328
FTUL393115 FTF1027CFTF0788CFTF1608
FTUL393011 FTH_1038FTH_1396FTH_0514
FTUL351581 FTL_1062FTL_1433FTL_0517
FRANT YRBIYRBHFT.1610
FPHI484022 FPHI_1710FPHI_1466FPHI_0497
FJOH376686 FJOH_2953FJOH_0282FJOH_4315
ESP42895 ENT638_3636ENT638_3634ENT638_3633ENT638_3631
EFER585054 EFER_3177EFER_3175EFER_3174EFER_3172
ECOO157 YHBNYRBIYRBHYRBF
ECOL83334 ECS4079ECS4077ECS4076ECS4074
ECOL585397 ECED1_3858ECED1_3856ECED1_3855ECED1_3853
ECOL585057 ECIAI39_3695ECIAI39_3693ECIAI39_3692ECIAI39_3690
ECOL585056 ECUMN_3680ECUMN_3678ECUMN_3677ECUMN_3675
ECOL585055 EC55989_3618EC55989_3616EC55989_3615EC55989_3613
ECOL585035 ECS88_3583ECS88_3581ECS88_3580ECS88_3577
ECOL585034 ECIAI1_3348ECIAI1_3346ECIAI1_3345ECIAI1_3343
ECOL481805 ECOLC_0500ECOLC_0502ECOLC_0503ECOLC_0505
ECOL469008 ECBD_0542ECBD_0544ECBD_0545ECBD_0547
ECOL439855 ECSMS35_3496ECSMS35_3494ECSMS35_3493ECSMS35_3491
ECOL413997 ECB_03065ECB_03063ECB_03062ECB_03060
ECOL409438 ECSE_3484ECSE_3482ECSE_3481ECSE_3479
ECOL405955 APECO1_3235APECO1_3237APECO1_3238APECO1_3240
ECOL364106 UTI89_C3636UTI89_C3634UTI89_C3633UTI89_C3631
ECOL362663 ECP_3288ECP_3286ECP_3285ECP_3282
ECOL331111 ECE24377A_3688ECE24377A_3686ECE24377A_3685ECE24377A_3683
ECOL316407 ECK3189:JW3167:B3200ECK3187:JW3165:B3198ECK3186:JW3164:B3197ECK3184:JW3162:B3195
ECOL199310 C3960C3958C3957C3955
ECAR218491 ECA0290ECA0292ECA0293ECA0295
DVUL882 DVU_1625DVU_0160DVU_1245
DSHI398580 DSHI_3586DSHI_3588DSHI_2380
DPSY177439 DP0764DP0802DP2287
DOLE96561 DOLE_0510DOLE_2110DOLE_1016
DNOD246195 DNO_0534DNO_0536DNO_0859
DDES207559 DDE_1767DDE_0335DDE_2298
DARO159087 DARO_3421DARO_3419DARO_3418DARO_3402
CVIO243365 CV_3330CV_3328CV_3327CV_0449
CTEP194439 CT_0824CT_0270CT_0326
CSP501479 CSE45_3596CSE45_5498CSE45_3334CSE45_1759
CSAL290398 CSAL_2224CSAL_2222CSAL_2221CSAL_2220
CRUT413404 RMAG_0084RMAG_1043RMAG_0158
CPSY167879 CPS_4541CPS_4539CPS_4538CPS_4536
CJAP155077 CJA_2803CJA_2801CJA_2800CJA_1609
CHOM360107 CHAB381_0303CHAB381_1749CHAB381_0576
CCON360104 CCC13826_1992CCC13826_1990CCC13826_1886
CCHL340177 CAG_1073CAG_0467CAG_0479
CBUR434922 COXBU7E912_0760COXBU7E912_0762COXBU7E912_0763COXBU7E912_0742
CBUR360115 COXBURSA331_A1205COXBURSA331_A1203COXBURSA331_A1202COXBURSA331_A1223
CBUR227377 CBU_0747CBU_0749CBU_0750CBU_0728
BVIE269482 BCEP1808_2894BCEP1808_2892BCEP1808_2891BCEP1808_0393
BTHA271848 BTH_I0488BTH_I0490BTH_I0491BTH_I3004
BSP36773 BCEP18194_A6119BCEP18194_A6117BCEP18194_A6116BCEP18194_A3512
BPSE320373 BURPS668_0583BURPS668_0585BURPS668_0586BURPS668_3677
BPSE320372 BURPS1710B_A0809BURPS1710B_A0811BURPS1710B_A0812BURPS1710B_A4002
BPSE272560 BPSL0535BPSL0537BPSL0538BPSL3150
BPET94624 BPET0452BPET0453BPET0148
BPER257313 BP0700BP0701BP3757
BPAR257311 BPP4029BPP4028BPP4257
BMAL320389 BMA10247_2944BMA10247_2946BMA10247_2947BMA10247_2776
BMAL320388 BMASAVP1_A0074BMASAVP1_A0072BMASAVP1_A0071BMASAVP1_A3228
BMAL243160 BMA_3105BMA_3103BMA_3102BMA_2726
BCEN331272 BCEN2424_2789BCEN2424_2787BCEN2424_2786BCEN2424_0414
BCEN331271 BCEN_2175BCEN_2173BCEN_2172BCEN_2693
BBRO257310 BB4502BB4501BB4844
BBAC264462 BD0827BD0809BD0915
BAMB398577 BAMMC406_2707BAMMC406_2705BAMMC406_2704BAMMC406_0341
BAMB339670 BAMB_2849BAMB_2847BAMB_2846BAMB_0332
ASP76114 EBA1320EBA1316EBA1315EBA1313
ASP62977 ACIAD1485ACIAD1483ACIAD1482ACIAD3244
ASP62928 AZO0791AZO0793AZO0794AZO0806
ASP232721 AJS_4131AJS_4132AJS_0748
ASAL382245 ASA_0313ASA_0311ASA_0310ASA_0309
APLE434271 APJL_0353APJL_0051APJL_0408APJL_1305
APLE416269 APL_0337APL_0051APL_0387APL_1292
AMAR329726 AM1_2196AM1_2193AM1_2318
AHYD196024 AHA_3925AHA_3927AHA_3928AHA_3929
AFER243159 AFE_0083AFE_0081AFE_0080AFE_2868
AEHR187272 MLG_2228MLG_2226MLG_2225MLG_2223
ADEH290397 ADEH_4172ADEH_4064ADEH_3137
ABOR393595 ABO_0554ABO_0556ABO_0557
ABAU360910 BAV3115BAV3114BAV3304
ABAC204669 ACID345_3769ACID345_1058ACID345_2891
AAVE397945 AAVE_0417AAVE_4784AAVE_4785AAVE_1013
AAEO224324 AQ_2173AQ_2171AQ_1546AQ_1531


Organism features enriched in list (features available for 211 out of the 225 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 2.799e-71392
Disease:Bubonic_plague 0.002146666
Disease:Dysentery 0.002146666
Disease:Gastroenteritis 0.00038801113
Disease:Tularemia 0.006022955
Endospores:No 5.673e-1043211
Endospores:Yes 6.323e-9253
GC_Content_Range4:0-40 6.651e-2127213
GC_Content_Range4:40-60 3.295e-13122224
GC_Content_Range7:30-40 3.549e-1127166
GC_Content_Range7:50-60 1.477e-1271107
GC_Content_Range7:60-70 0.003224461134
Genome_Size_Range5:0-2 2.825e-1518155
Genome_Size_Range5:2-4 0.002381657197
Genome_Size_Range5:4-6 5.025e-15109184
Genome_Size_Range5:6-10 0.00103912747
Genome_Size_Range9:1-2 3.882e-1018128
Genome_Size_Range9:4-5 2.173e-65596
Genome_Size_Range9:5-6 1.160e-75488
Genome_Size_Range9:6-8 0.00031462438
Gram_Stain:Gram_Neg 2.182e-43195333
Motility:No 6.143e-633151
Motility:Yes 9.472e-7124267
Optimal_temp.:20-30 0.009687567
Optimal_temp.:35-37 1.434e-61313
Oxygen_Req:Anaerobic 0.000096021102
Oxygen_Req:Facultative 0.000175492201
Pathogenic_in:Animal 0.00274423466
Pathogenic_in:No 0.003560768226
Pathogenic_in:Plant 0.00285821115
Shape:Coccus 2.564e-61282
Shape:Rod 1.995e-16171347
Shape:Spiral 0.0091047634
Temp._range:Hyperthermophilic 0.0003495123
Temp._range:Mesophilic 0.0003527186473
Temp._range:Psychrophilic 0.000095499
Temp._range:Thermophilic 0.0001252335



Back to top


ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 315
Effective number of orgs (counting one per cluster within 468 clusters): 247

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX1
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 71
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE292459 ncbi Symbiobacterium thermophilum IAM 148630
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSP64471 ncbi Synechococcus sp. CC93110
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)1
SSP321327 ncbi Synechococcus sp. JA-3-3Ab1
SSP1148 ncbi Synechocystis sp. PCC 68031
SSOL273057 ncbi Sulfolobus solfataricus P21
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138551
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington1
RSP357808 ncbi Roseiflexus sp. RS-10
RSP101510 ncbi Rhodococcus jostii RHA11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa1
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith1
RPRO272947 ncbi Rickettsia prowazekii Madrid E1
RMAS416276 ncbi Rickettsia massiliae MTU51
RCON272944 ncbi Rickettsia conorii Malish 71
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RALB246199 Ruminococcus albus 80
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8310
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2551
NSP35761 Nocardioides sp.1
NSP103690 ncbi Nostoc sp. PCC 71201
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NFAR247156 ncbi Nocardia farcinica IFM 101521
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8431
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A1
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23651
LMON169963 ncbi Listeria monocytogenes EGD-e1
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINN272626 ncbi Listeria innocua Clip112621
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
GVIO251221 ncbi Gloeobacter violaceus PCC 74211
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-20
GKAU235909 ncbi Geobacillus kaustophilus HTA4260
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRED349161 ncbi Desulfotomaculum reducens MI-11
DRAD243230 ncbi Deinococcus radiodurans R10
DHAF138119 ncbi Desulfitobacterium hafniense Y510
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CTET212717 ncbi Clostridium tetani E881
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEI306537 ncbi Corynebacterium jeikeium K4111
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29011
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDIF272563 ncbi Clostridium difficile 6301
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCAV227941 ncbi Chlamydophila caviae GPIC1
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80520
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
CABO218497 ncbi Chlamydophila abortus S26/31
BXEN266265 ncbi Burkholderia xenovorans LB4000
BWEI315730 ncbi Bacillus weihenstephanensis KBAB40
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054761
BTHU412694 ncbi Bacillus thuringiensis Al Hakam0
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-270
BSUB ncbi Bacillus subtilis subtilis 1680
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse1
BPUM315750 ncbi Bacillus pumilus SAFR-0320
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145800
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-11
BHAL272558 ncbi Bacillus halodurans C-1250
BGAR290434 ncbi Borrelia garinii PBi0
BCLA66692 ncbi Bacillus clausii KSM-K160
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1020
BCER405917 Bacillus cereus W0
BCER315749 ncbi Bacillus cytotoxicus NVH 391-980
BCER288681 ncbi Bacillus cereus E33L0
BCER226900 ncbi Bacillus cereus ATCC 145790
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5831
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02480
BANT568206 ncbi Bacillus anthracis CDC 6840
BANT261594 ncbi Bacillus anthracis Ames Ancestor0
BANT260799 ncbi Bacillus anthracis Sterne0
BAMY326423 ncbi Bacillus amyloliquefaciens FZB420
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294131
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.0
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG10
AMET293826 ncbi Alkaliphilus metalliredigens QYMF0
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
AAUR290340 ncbi Arthrobacter aurescens TC10


Names of the homologs of the genes in the group in each of these orgs
  G7665   G7663   G7662   EG12801   
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160 RCIX953
TWHI218496
TWHI203267
TVOL273116
TTHE300852
TTHE262724
TTEN273068
TSP28240
TSP1755
TROS309801
TPSE340099
TPET390874
TPEN368408
TPAL243276
TMAR243274
TLET416591
TKOD69014
TFUS269800 TFU_0009
TERY203124 TERY_3105
TDEN243275
TACI273075
SWOL335541
STRO369723
STOK273063 ST1422
STHE322159
STHE299768
STHE292459
STHE264199
SSUI391296 SSU98_0420
SSUI391295 SSU05_0433
SSP64471
SSP321332 CYB_1086
SSP321327 CYA_1546
SSP1148 SLL1001
SSOL273057 SSO0094
SSAP342451
SRUB309807 SRU_0343
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SHAE279808
SGOR29390
SERY405948 SACE_6866
SEPI176280
SEPI176279
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037
SALA317655
SAGA211110
SAGA208435
SAGA205921
SACI330779
RXYL266117
RTYP257363 RT0490
RSP357808
RSP101510 RHA1_RO01974
RSAL288705
RRIC452659 RRIOWA_0791
RRIC392021 A1G_03760
RPRO272947 RP505
RMAS416276 RMA_0668
RCON272944 RC0661
RCAS383372
RALB246199
PTOR263820
PTHE370438
PPEN278197
PMOB403833
PMAR93060
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PISL384616
PHOR70601
PFUR186497
PAST100379
PARS340102
PAER178306
PACN267747
PABY272844
OTSU357244
OIHE221109
NWIN323098 NWI_0931
NSP35761 NOCA_0700
NSP103690 ALR0180
NSEN222891
NPHA348780
NFAR247156 NFA20200
MVAN350058 MVAN_1254
MTUB419947 MRA_0666
MTUB336982 TBFG_10668
MTHE349307
MTHE264732
MTHE187420 MTH1071
MTBRV RV0655
MTBCDC MT0684
MSYN262723
MSTA339860
MSP189918 MKMS_0986
MSP164757 MJLS_0996
MSP164756 MMCS_0968
MSME246196 MSMEG_1366
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631 ML1892
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054 MFLV_5099
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBOV410289 BCG_0704
MBOV233413 MB0674
MBAR269797
MAVI243243 MAV_4504
MART243272
MAER449447 MAE_05900
MAEO419665
MACE188937 MA3766
MABS561007 MAB_3871C
LXYL281090
LWEL386043
LSPH444177
LSAK314315
LREU557436
LPLA220668
LMON265669 LMOF2365_0531
LMON169963 LMO0502
LMES203120 LEUM_0800
LLAC272623
LLAC272622
LJOH257314 LJ_0787
LINN272626 LIN0502
LHEL405566
LGAS324831 LGAS_0545
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LACI272621
KRAD266940
IHOS453591
HWAL362976
HSP64091
HSAL478009
HMUK485914
HMOD498761
HMAR272569
HBUT415426
HAUR316274
GVIO251221 GLR4114
GTHE420246
GKAU235909
FSUC59374 FSU1181
FSP1855
FSP106370
FNOD381764
FMAG334413
FALN326424
ERUM302409
ERUM254945
ELIT314225
EFAE226185
ECHA205920
ECAN269484
DSP255470
DSP216389
DRED349161 DRED_3209
DRAD243230
DHAF138119
DGEO319795
DETH243164
CTRA471473 CTLON_0652
CTRA471472 CTL0656
CTET212717 CTC_00908
CSUL444179
CPRO264201 PC1782
CPNE182082 CPB0547
CPNE138677 CPJ0526
CPNE115713 CPN0526
CPNE115711 CP_0226
CPHY357809
CPER289380
CPER195103
CPER195102
CPEL335992 SAR11_0497
CNOV386415
CMUR243161 TC_0679
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEI306537 JK1711
CHYD246194 CHY_2422
CGLU196627 CG0736
CFEL264202 CF0788
CEFF196164
CDIP257309
CDIF272563 CD3028
CDES477974
CCAV227941 CCA_00219
CBOT536232
CBOT515621
CBOT508765 CLL_A2335
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CBEI290402
CACE272562
CABO218497 CAB215
BXEN266265
BWEI315730
BTUR314724
BTRI382640 BT_0194
BTHU412694
BTHU281309
BSUB
BSP107806
BQUI283165 BQ01650
BPUM315750
BLON206672
BLIC279010
BHER314723
BHEN283166 BH01760
BHAL272558
BGAR290434
BCLA66692
BCIC186490
BCER572264
BCER405917
BCER315749
BCER288681
BCER226900
BBUR224326
BBAC360095 BARBAKC583_0335
BAPH372461
BAPH198804
BANT592021
BANT568206
BANT261594
BANT260799
BAMY326423
BAFZ390236
AYEL322098
AVAR240292 AVA_2673
AURANTIMONAS
ASP1667
APHA212042
APER272557
AORE350688
ANAE240017
AMET293826
AMAR234826
ALAI441768
AFUL224325
ACEL351607
AAUR290340


Organism features enriched in list (features available for 295 out of the 315 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00001206592
Arrangment:Clusters 7.393e-61717
Arrangment:Singles 0.0014307128286
Disease:Pharyngitis 0.004098388
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00050691111
Disease:Wide_range_of_infections 0.00050691111
Disease:bronchitis_and_pneumonitis 0.004098388
Disease:gastroenteritis 0.0012602113
Endospores:No 3.453e-14150211
Endospores:Yes 9.118e-124953
GC_Content_Range4:0-40 5.897e-20160213
GC_Content_Range4:40-60 2.221e-979224
GC_Content_Range4:60-100 0.000153855145
GC_Content_Range7:0-30 5.309e-104347
GC_Content_Range7:30-40 5.643e-10117166
GC_Content_Range7:50-60 7.863e-1223107
GC_Content_Range7:60-70 0.000017147134
Genome_Size_Range5:0-2 3.242e-14118155
Genome_Size_Range5:2-4 0.0030210114197
Genome_Size_Range5:4-6 2.289e-1451184
Genome_Size_Range5:6-10 0.00017461247
Genome_Size_Range9:0-1 0.00001952427
Genome_Size_Range9:1-2 1.902e-994128
Genome_Size_Range9:2-3 0.000598976120
Genome_Size_Range9:4-5 2.048e-72696
Genome_Size_Range9:5-6 2.856e-62588
Genome_Size_Range9:6-8 0.0003280938
Gram_Stain:Gram_Neg 1.532e-6174333
Gram_Stain:Gram_Pos 1.307e-49147150
Habitat:Multiple 0.000364672178
Habitat:Specialized 0.00021513953
Motility:No 2.208e-11111151
Motility:Yes 8.761e-1099267
Optimal_temp.:- 0.0007188112257
Optimal_temp.:30-37 3.631e-61818
Optimal_temp.:37 0.007220164106
Oxygen_Req:Aerobic 0.001502078185
Oxygen_Req:Anaerobic 1.329e-673102
Oxygen_Req:Microaerophilic 0.0023969318
Pathogenic_in:Animal 0.00944662566
Shape:Coccus 3.077e-106782
Shape:Irregular_coccus 7.393e-61717
Shape:Rod 1.043e-11136347
Shape:Sphere 0.00189811619
Shape:Spiral 0.0006433834
Temp._range:Hyperthermophilic 2.450e-62223
Temp._range:Mesophilic 0.0002049223473
Temp._range:Thermophilic 1.139e-63135



Back to top


ORGANISMS ENRICHED FOR GROUP:




Back to top


ORGANISMS DEPLETED FOR GROUP:




Back to top


PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181790.7025
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3002130.6999
PWY-1269 (CMP-KDO biosynthesis I)3252200.6865
GLYCOCAT-PWY (glycogen degradation I)2461860.6642
NAGLIPASYN-PWY (lipid IVA biosynthesis)3482220.6482
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911980.6223
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961990.6163
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901940.5980
PWY-5918 (heme biosynthesis I)2721860.5913
PWY-5913 (TCA cycle variation IV)3011950.5771
AST-PWY (arginine degradation II (AST pathway))1201110.5734
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861880.5681
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911470.5655
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251610.5548
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951470.5518
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761370.5451
TYRFUMCAT-PWY (tyrosine degradation I)1841390.5314
PWY-4041 (γ-glutamyl cycle)2791790.5258
PWY-5386 (methylglyoxal degradation I)3051840.4937
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551640.4887
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391950.4869
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831320.4836
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491150.4793
KDOSYN-PWY (KDO transfer to lipid IVA I)1801300.4792
REDCITCYC (TCA cycle variation II)1741270.4779
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)1791290.4752
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291890.4698
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222180.4689
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561170.4679
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81760.4645
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911330.4640
LIPASYN-PWY (phospholipases)2121420.4615
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3982100.4610
PWY-5669 (phosphatidylethanolamine biosynthesis I)4162150.4594
POLYISOPRENSYN-PWY (polyisoprenoid biosynthesis (E. coli))116910.4216
PWY-5188 (tetrapyrrole biosynthesis I)4392160.4208
DAPLYSINESYN-PWY (lysine biosynthesis I)3421860.4196
PWY-5340 (sulfate activation for sulfonation)3852000.4192
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491510.4166
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491510.4166
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94780.4113
GLUCONSUPER-PWY (D-gluconate degradation)2291420.4110
PWY-5148 (acyl-CoA hydrolysis)2271400.4029



Back to top


PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7663   G7662   EG12801   
G76650.9997630.9997230.999396
G76630.9998450.999383
G76620.999305
EG12801



Back to top


PAIRWISE BLAST SCORES:

  G7665   G7663   G7662   EG12801   
G76650.0f0---
G7663-0.0f0--
G7662--0.0f0-
EG12801---0.0f0



Back to top


PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis) (degree of match pw to cand: 0.125, degree of match cand to pw: 0.500, average score: 0.609)
  Genes in pathway or complex:
             0.8495 0.7656 EG10520 (waaA) KDOTRANS-MONOMER (KDO transferase)
             0.1461 0.0667 EG10545 (lpxA) UDPNACETYLGLUCOSAMACYLTRANS-MONOMER (LpxA)
             0.9590 0.9161 EG10265 (lpxC) UDPACYLGLCNACDEACETYL-MONOMER (UDP-3-O-acyl-N-acetylglucosamine deacetylase)
             0.2005 0.0689 EG10316 (lpxD) UDPHYDROXYMYRGLUCOSAMNACETYLTRANS-MONO (UDP-3-O-[3-hydroxymyristoyl]glucosamine N-acetyltransferase)
             0.0507 0.0034 EG12666 (lpxH) EG12666-MONOMER (UDP-2,3-diacylglucosamine hydrolase)
             0.3210 0.0759 EG11409 (lpxK) TETRAACYLDISACC4KIN-MONOMER (tetraacyldisaccharide 4'-kinase)
             0.2493 0.0627 EG10546 (lpxB) LIPIDADISACCHARIDESYNTH-MONOMER (LpxB)
             0.8064 0.7047 EG10464 (lpxL) LAUROYLACYLTRAN-MONOMER (lauroyl acyltransferase)
             0.9302 0.8955 G7241 (lpxP) PALMITOTRANS-MONOMER (palmitoleoyl acyltransferase)
             0.6641 0.5041 EG10614 (lpxM) MYRISTOYLACYLTRAN-MONOMER (myristoyl-acyl carrier protein (ACP)-dependent acyltransferase)
             0.9996 0.9990 EG10973 (gutQ) EG10973-MONOMER (D-arabinose 5-phosphate isomerase)
   *in cand* 0.9997 0.9993 G7662 (kdsD) G7662-MONOMER (D-arabinose 5-phosphate isomerase)
             0.7095 0.4046 EG10518 (kdsA) KDO-8PSYNTH-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate synthase)
   *in cand* 0.9997 0.9994 G7663 (kdsC) G7663-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer)
             0.6991 0.0015 EG10519 (kdsB) CPM-KDOSYNTH-MONOMER (3-deoxy-D-manno-octulosonate cytidylyltransferase)
             0.0384 0.0013 EG50003 (acpP) TRANS-DELTA3-CIS-DELTA5-DODECENOYL-ACP (trans-Δ3-cis-Δ5-dodecenoyl-ACP)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9993 EG12801 (mlaF) YRBF-MONOMER (MlaF)
   *in cand* 0.9997 0.9994 G7665 (lptA) YHBN-MONOMER (LptA)

- LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis) (degree of match pw to cand: 0.080, degree of match cand to pw: 0.500, average score: 0.607)
  Genes in pathway or complex:
             0.1461 0.0667 EG10545 (lpxA) UDPNACETYLGLUCOSAMACYLTRANS-MONOMER (LpxA)
             0.9590 0.9161 EG10265 (lpxC) UDPACYLGLCNACDEACETYL-MONOMER (UDP-3-O-acyl-N-acetylglucosamine deacetylase)
             0.2005 0.0689 EG10316 (lpxD) UDPHYDROXYMYRGLUCOSAMNACETYLTRANS-MONO (UDP-3-O-[3-hydroxymyristoyl]glucosamine N-acetyltransferase)
             0.0507 0.0034 EG12666 (lpxH) EG12666-MONOMER (UDP-2,3-diacylglucosamine hydrolase)
             0.3210 0.0759 EG11409 (lpxK) TETRAACYLDISACC4KIN-MONOMER (tetraacyldisaccharide 4'-kinase)
             0.2493 0.0627 EG10546 (lpxB) LIPIDADISACCHARIDESYNTH-MONOMER (LpxB)
             0.9996 0.9990 EG10973 (gutQ) EG10973-MONOMER (D-arabinose 5-phosphate isomerase)
   *in cand* 0.9997 0.9993 G7662 (kdsD) G7662-MONOMER (D-arabinose 5-phosphate isomerase)
             0.7095 0.4046 EG10518 (kdsA) KDO-8PSYNTH-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate synthase)
   *in cand* 0.9997 0.9994 G7663 (kdsC) G7663-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer)
             0.6991 0.0015 EG10519 (kdsB) CPM-KDOSYNTH-MONOMER (3-deoxy-D-manno-octulosonate cytidylyltransferase)
             0.8495 0.7656 EG10520 (waaA) KDOTRANS-MONOMER (KDO transferase)
             0.6641 0.5041 EG10614 (lpxM) MYRISTOYLACYLTRAN-MONOMER (myristoyl-acyl carrier protein (ACP)-dependent acyltransferase)
             0.8064 0.7047 EG10464 (lpxL) LAUROYLACYLTRAN-MONOMER (lauroyl acyltransferase)
             0.6918 0.5900 EG11423 (waaK) EG11423-MONOMER (lipopolysaccharide core biosynthesis; heptosyl transferase IV; probably hexose transferase)
             0.7991 0.7066 EG11353 (waaJ) EG11353-MONOMER (UDP-glucose:(glucosyl)LPS α-1,2-glucosyltransferase)
             0.7676 0.5550 EG11352 (waaI) EG11352-MONOMER (UDP-D-glucose:(glucosyl)LPS α-1,3-glucosyltransferase)
             0.5434 0.4029 EG11351 (waaB) EG11351-MONOMER (UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase)
             0.8237 0.7897 EG11425 (waaY) EG11425-MONOMER (lipopolysaccharide core heptose (II) kinase)
             0.8153 0.7201 EG11341 (waaQ) EG11341-MONOMER (lipopolysaccharide core heptosyl transferase III)
             0.7834 0.7785 EG11340 (waaP) EG11340-MONOMER (lipopolysaccharide core heptose (I) kinase)
             0.8214 0.6775 EG11339 (waaG) EG11339-MONOMER (lipopolysaccharide glucosyltransferase I)
             0.8699 0.7594 EG12210 (waaF) EG12210-MONOMER (ADP-heptose:LPS heptosyltransferase II)
             0.7566 0.5875 EG11189 (waaC) EG11189-MONOMER (ADP-heptose:LPS heptosyl transferase I)
             0.0384 0.0013 EG50003 (acpP) TRANS-DELTA3-CIS-DELTA5-DODECENOYL-ACP (trans-Δ3-cis-Δ5-dodecenoyl-ACP)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9993 EG12801 (mlaF) YRBF-MONOMER (MlaF)
   *in cand* 0.9997 0.9994 G7665 (lptA) YHBN-MONOMER (LptA)

- PWY-1269 (CMP-KDO biosynthesis I) (degree of match pw to cand: 0.400, degree of match cand to pw: 0.500, average score: 0.969)
  Genes in pathway or complex:
             0.6991 0.0015 EG10519 (kdsB) CPM-KDOSYNTH-MONOMER (3-deoxy-D-manno-octulosonate cytidylyltransferase)
   *in cand* 0.9997 0.9994 G7663 (kdsC) G7663-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer)
             0.7095 0.4046 EG10518 (kdsA) KDO-8PSYNTH-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate synthase)
   *in cand* 0.9997 0.9993 G7662 (kdsD) G7662-MONOMER (D-arabinose 5-phosphate isomerase)
             0.9996 0.9990 EG10973 (gutQ) EG10973-MONOMER (D-arabinose 5-phosphate isomerase)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9993 EG12801 (mlaF) YRBF-MONOMER (MlaF)
   *in cand* 0.9997 0.9994 G7665 (lptA) YHBN-MONOMER (LptA)



Back to top


GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G7662 G7663 (centered at G7663)
EG12801 (centered at EG12801)
G7665 (centered at G7665)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7665   G7663   G7662   EG12801   
191/623249/623332/623306/623
AAEO224324:0:Tyes457455100
AAVE397945:0:Tyes042914292587
ABAC204669:0:Tyes-272901845
ABAU360910:0:Tyes-10191
ABOR393595:0:Tyes023-
ABUT367737:0:Tyes-9230-
ACAU438753:0:Tyes--01527
ACRY349163:8:Tyes--01361
ADEH290397:0:Tyes-10479390
AEHR187272:0:Tyes5320
AFER243159:0:Tyes3102749
AHYD196024:0:Tyes0234
AMAR329726:9:Tyes-30123
APLE416269:0:Tyes29303431252
APLE434271:0:Tno29903521237
ASAL382245:5:Tyes4210
ASP232721:2:Tyes-330033010
ASP62928:0:Tyes02315
ASP62977:0:Tyes3101623
ASP76114:2:Tyes5320
AVAR240292:3:Tyes---0
BABO262698:0:Tno--0-
BABO262698:1:Tno---0
BAMB339670:3:Tno2582258025790
BAMB398577:3:Tno2397239523940
BBAC264462:0:Tyes-190103
BBAC360095:0:Tyes--0-
BBRO257310:0:Tyes-10343
BCAN483179:0:Tno--0-
BCAN483179:1:Tno---0
BCEN331271:2:Tno310524
BCEN331272:3:Tyes2371236923680
BFRA272559:1:Tyes-29030-
BFRA295405:0:Tno-31510-
BHEN283166:0:Tyes--0-
BJAP224911:0:Fyes--18600
BMAL243160:1:Tno3393373360
BMAL320388:1:Tno3103086
BMAL320389:1:Tyes1651671680
BMEL224914:0:Tno--0-
BMEL224914:1:Tno---0
BMEL359391:0:Tno--0-
BMEL359391:1:Tno---0
BOVI236:0:Tyes--0-
BOVI236:1:Tyes---0
BPAR257311:0:Tno-10214
BPER257313:0:Tyes-012778
BPET94624:0:Tyes-3053060
BPSE272560:1:Tyes0232630
BPSE320372:1:Tno0233062
BPSE320373:1:Tno0122983
BQUI283165:0:Tyes--0-
BSP36773:2:Tyes2654265226510
BSP376:0:Tyes--11120
BSUI204722:0:Tyes--0-
BSUI204722:1:Tyes---0
BSUI470137:0:Tno--0-
BSUI470137:1:Tno---0
BTHA271848:1:Tno0232465
BTHE226186:0:Tyes-01661-
BTRI382640:1:Tyes--0-
BVIE269482:7:Tyes2480247824770
CABO218497:0:Tyes--0-
CAULO:0:Tyes--058
CBLO203907:0:Tyes0-411-
CBLO291272:0:Tno0-423-
CBOT508765:1:Tyes-0--
CBUR227377:1:Tyes1921220
CBUR360115:1:Tno31021
CBUR434922:2:Tno1719200
CCAV227941:1:Tyes--0-
CCHL340177:0:Tyes-603012
CCON360104:2:Tyes02691-
CCUR360105:0:Tyes-5830-
CDIF272563:1:Tyes--0-
CFEL264202:1:Tyes--0-
CFET360106:0:Tyes-0596-
CGLU196627:0:Tyes---0
CHOM360107:1:Tyes-01399265
CHUT269798:0:Tyes-29650-
CHYD246194:0:Tyes---0
CJAP155077:0:Tyes1177117511740
CJEI306537:0:Tyes---0
CJEJ192222:0:Tyes-0774-
CJEJ195099:0:Tno-0837-
CJEJ354242:2:Tyes-0738-
CJEJ360109:0:Tyes-0396-
CJEJ407148:0:Tno-0763-
CMUR243161:1:Tyes--0-
CPEL335992:0:Tyes--0-
CPNE115711:1:Tyes--0-
CPNE115713:0:Tno--0-
CPNE138677:0:Tno--0-
CPNE182082:0:Tno--0-
CPRO264201:0:Fyes--0-
CPSY167879:0:Tyes5320
CRUT413404:0:Tyes090072-
CSAL290398:0:Tyes4210
CSP501479:1:Fyes-0--
CSP501479:7:Fyes260-0-
CSP501479:8:Fyes---0
CSP78:2:Tyes--02380
CTEP194439:0:Tyes-545056
CTET212717:0:Tyes--0-
CTRA471472:0:Tyes--0-
CTRA471473:0:Tno--0-
CVES412965:0:Tyes-7490-
CVIO243365:0:Tyes2959295729560
DARO159087:0:Tyes1917160
DDES207559:0:Tyes-145201994
DNOD246195:0:Tyes0-2314
DOLE96561:0:Tyes-01617519
DPSY177439:2:Tyes-0381558
DRED349161:0:Tyes---0
DSHI398580:5:Tyes1209-12110
DVUL882:1:Tyes-145901079
ECAR218491:0:Tyes0235
ECOL199310:0:Tno5320
ECOL316407:0:Tno5320
ECOL331111:6:Tno5320
ECOL362663:0:Tno6430
ECOL364106:1:Tno5320
ECOL405955:2:Tyes5320
ECOL409438:6:Tyes5320
ECOL413997:0:Tno5320
ECOL439855:4:Tno5320
ECOL469008:0:Tno0235
ECOL481805:0:Tno0235
ECOL585034:0:Tno5320
ECOL585035:0:Tno5320
ECOL585055:0:Tno5320
ECOL585056:2:Tno5320
ECOL585057:0:Tno5320
ECOL585397:0:Tno5320
ECOL83334:0:Tno5320
ECOLI:0:Tno5320
ECOO157:0:Tno5320
EFER585054:1:Tyes5320
ESP42895:1:Tyes5320
FJOH376686:0:Tyes-270804063
FNUC190304:0:Tyes-0690-
FPHI484022:1:Tyes-125510060
FRANT:0:Tno-2260768
FSUC59374:0:Tyes---0
FTUL351581:0:Tno-4717990
FTUL393011:0:Tno-4357280
FTUL393115:0:Tyes-2240750
FTUL401614:0:Tyes-5728870
FTUL418136:0:Tno-5302300
FTUL458234:0:Tno-4547480
GBET391165:0:Tyes--0753
GFOR411154:0:Tyes-12200-
GMET269799:1:Tyes4914894880
GOXY290633:5:Tyes--0280
GSUL243231:0:Tyes1066106910700
GURA351605:0:Tyes1932193419350
GVIO251221:0:Tyes---0
HACI382638:1:Tyes-14460-
HARS204773:0:Tyes2624230
HCHE349521:0:Tyes4210
HDUC233412:0:Tyes287348090
HHAL349124:0:Tyes4210
HHEP235279:0:Tyes1571550-
HINF281310:0:Tyes546446430
HINF374930:0:Tyes45401514
HINF71421:0:Tno605815800
HNEP81032:0:Tyes0-8092669
HPY:0:Tno-1410-
HPYL357544:1:Tyes-1660-
HPYL85963:0:Tno-1520-
HSOM205914:1:Tyes25810256
HSOM228400:0:Tno20110199
ILOI283942:0:Tyes0235
JSP290400:1:Tyes154-01676
JSP375286:0:Tyes5149480
KPNE272620:2:Tyes5320
LBIF355278:2:Tyes--14570
LBIF456481:2:Tno--15190
LBOR355276:1:Tyes--14910
LBOR355277:1:Tno--01703
LCHO395495:0:Tyes4078103243
LGAS324831:0:Tyes---0
LINN272626:1:Tno--0-
LINT189518:1:Tyes--02028
LINT267671:1:Tno--01791
LINT363253:3:Tyes-3680148
LJOH257314:0:Tyes---0
LMES203120:1:Tyes--0-
LMON169963:0:Tno--0-
LMON265669:0:Tyes--0-
LPNE272624:0:Tno0234
LPNE297245:1:Fno0234
LPNE297246:1:Fyes0234
LPNE400673:0:Tno4210
MABS561007:1:Tyes---0
MACE188937:0:Tyes-0--
MAER449447:0:Tyes---0
MAQU351348:2:Tyes4210
MAVI243243:0:Tyes---0
MBOV233413:0:Tno---0
MBOV410289:0:Tno---0
MCAP243233:0:Tyes0231157
MEXT419610:0:Tyes--27250
MFLA265072:0:Tyes310100
MGIL350054:3:Tyes---0
MLEP272631:0:Tyes---0
MLOT266835:2:Tyes--17070
MMAG342108:0:Tyes--36020
MMAR394221:0:Tyes--4880
MPET420662:1:Tyes0365136522944
MSME246196:0:Tyes---0
MSP164756:1:Tno---0
MSP164757:0:Tno---0
MSP189918:2:Tyes---0
MSP266779:3:Tyes--11960
MSP400668:0:Tyes1317201314
MSP409:2:Tyes--02844
MSUC221988:0:Tyes73701735
MTBCDC:0:Tno---0
MTBRV:0:Tno---0
MTHE187420:0:Tyes-0--
MTUB336982:0:Tno---0
MTUB419947:0:Tyes---0
MVAN350058:0:Tyes---0
MXAN246197:0:Tyes-046672528
NARO279238:0:Tyes--02154
NEUR228410:0:Tyes0--2356
NEUT335283:2:Tyes1430--0
NFAR247156:2:Tyes---0
NGON242231:0:Tyes023480
NHAM323097:2:Tyes--20370
NMEN122586:0:Tno3101558
NMEN122587:0:Tyes1560156215630
NMEN272831:0:Tno023111
NMEN374833:0:Tno1517151915200
NMUL323848:3:Tyes02-2641
NOCE323261:1:Tyes5320
NSP103690:6:Tyes---0
NSP35761:1:Tyes---0
NSP387092:0:Tyes-74701003
NWIN323098:0:Tyes--0-
OANT439375:4:Tyes--0-
OANT439375:5:Tyes---0
OCAR504832:0:Tyes--0423
PAER208963:0:Tyes4210
PAER208964:0:Tno4210
PARC259536:0:Tyes310-
PATL342610:0:Tyes5320
PCAR338963:0:Tyes023813
PCRY335284:1:Tyes023-
PDIS435591:0:Tyes-02718-
PENT384676:0:Tyes0234
PFLU205922:0:Tyes0234
PFLU216595:1:Tyes0234
PFLU220664:0:Tyes0234
PGIN242619:0:Tyes-5060833
PHAL326442:1:Tyes5320
PING357804:0:Tyes2128212602125
PINT246198:0:Tyes-0--
PINT246198:1:Tyes--0-
PLUM243265:0:Fyes5320
PLUT319225:0:Tyes-80812720
PMAR74547:0:Tyes-10-
PMEN399739:0:Tyes0234
PMUL272843:1:Tyes03523532
PNAP365044:8:Tyes3049344234430
PPRO298386:2:Tyes5320
PPUT160488:0:Tno0234
PPUT351746:0:Tyes0234
PPUT76869:0:Tno0234
PRUM264731:0:Tyes-0412-
PSP117:0:Tyes-145114520
PSP296591:2:Tyes3673407340740
PSP312153:0:Tyes-183318320
PSP56811:2:Tyes310-
PSTU379731:0:Tyes0234
PSYR205918:0:Tyes4210
PSYR223283:2:Tyes4210
RAKA293614:0:Fyes--5210
RBEL336407:0:Tyes--0584
RBEL391896:0:Fno--7800
RCAN293613:0:Fyes--5010
RCON272944:0:Tno--0-
RDEN375451:4:Tyes2-02688
RETL347834:5:Tyes0-31271933
REUT264198:3:Tyes0-22789
REUT381666:2:Tyes0-22956
RFEL315456:2:Tyes--6510
RFER338969:1:Tyes-130113020
RLEG216596:6:Tyes--14180
RMAS416276:1:Tyes--0-
RMET266264:2:Tyes0-22940
RPAL258594:0:Tyes--03099
RPAL316055:0:Tyes-35120769
RPAL316056:0:Tyes--0682
RPAL316057:0:Tyes--0778
RPAL316058:0:Tyes--29210
RPOM246200:1:Tyes--02527
RPRO272947:0:Tyes--0-
RRIC392021:0:Fno--0-
RRIC452659:0:Tyes--0-
RRUB269796:1:Tyes--02887
RSOL267608:1:Tyes0232605
RSP101510:3:Fyes---0
RSPH272943:4:Tyes--17460
RSPH349101:2:Tno--17100
RSPH349102:5:Tyes--16940
RTYP257363:0:Tno--0-
SACI56780:0:Tyes22722510440
SAVE227882:1:Fyes-0-2583
SBAL399599:3:Tyes0234
SBAL402882:1:Tno0234
SBOY300268:1:Tyes0235
SCO:2:Fyes-2498-0
SDEG203122:0:Tyes310-
SDEN318161:0:Tyes0235
SDYS300267:1:Tyes5320
SELO269084:0:Tyes-6716680
SENT209261:0:Tno5320
SENT220341:0:Tno5320
SENT295319:0:Tno5320
SENT321314:2:Tno5320
SENT454169:2:Tno5320
SERY405948:0:Tyes---0
SFLE198214:0:Tyes5320
SFLE373384:0:Tno5320
SFUM335543:0:Tyes-20460391
SGLO343509:3:Tyes0234
SHAL458817:0:Tyes5320
SHIGELLA:0:Tno5320
SLAC55218:1:Fyes0-21797
SLOI323850:0:Tyes5320
SMED366394:3:Tyes--01344
SMEL266834:1:Tyes--0-
SMEL266834:2:Tyes---0
SONE211586:1:Tyes5320
SPEA398579:0:Tno5320
SPRO399741:1:Tyes5320
SRUB309807:1:Tyes---0
SSED425104:0:Tyes0235
SSOL273057:0:Tyes-0--
SSON300269:1:Tyes5320
SSP1131:0:Tyes-01-
SSP1148:0:Tyes---0
SSP292414:0:Tyes--0-
SSP292414:2:Tyes0--1783
SSP321327:0:Tyes---0
SSP321332:0:Tyes---0
SSP387093:0:Tyes-01153135
SSP644076:1:Fyes--0-
SSP644076:6:Fyes0---
SSP644076:7:Fyes---0
SSP84588:0:Tyes-01-
SSP94122:1:Tyes0234
SSUI391295:0:Tyes-0--
SSUI391296:0:Tyes-0--
STOK273063:0:Tyes-0--
STYP99287:1:Tyes5320
TCRU317025:0:Tyes4834850488
TDEN292415:0:Tyes0231391
TDEN326298:0:Tyes-89201344
TELO197221:0:Tyes1263--0
TERY203124:0:Tyes--0-
TFUS269800:0:Tyes-0--
TTUR377629:0:Tyes310-
UMET351160:0:Tyes-0--
VCHO:0:Tyes6430
VCHO345073:1:Tno5320
VEIS391735:1:Tyes417012228
VFIS312309:2:Tyes0235
VPAR223926:1:Tyes4-20
VVUL196600:2:Tyes0235
VVUL216895:1:Tno5320
WSUC273121:0:Tyes-1831040
XAUT78245:1:Tyes--02227
XAXO190486:0:Tyes3101372
XCAM190485:0:Tyes3101410
XCAM314565:0:Tno0232999
XCAM316273:0:Tno3101373
XCAM487884:0:Tno0233118
XFAS160492:2:Tno1004100610070
XFAS183190:1:Tyes023996
XFAS405440:0:Tno023969
XORY291331:0:Tno9939959960
XORY342109:0:Tyes9209229230
XORY360094:0:Tno6202005
YENT393305:1:Tyes5320
YPES187410:5:Tno6420
YPES214092:3:Tno5320
YPES349746:2:Tno5320
YPES360102:3:Tyes0235
YPES377628:2:Tno5320
YPES386656:2:Tno0235
YPSE273123:2:Tno5320
YPSE349747:2:Tno0235
ZMOB264203:0:Tyes--067



Back to top