CANDIDATE ID: 278

CANDIDATE ID: 278

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9950250e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7665 (lptA) (b3200)
   Products of gene:
     - YHBN-MONOMER (LptA)
     - ABC-53-CPLX (LptABCFG ABC transporter)

- G7663 (kdsC) (b3198)
   Products of gene:
     - G7663-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer)
     - KDO-8PPHOSPHAT-CPLX (3-deoxy-D-manno-octulosonate 8-phosphate phosphatase)
       Reactions:
        3-deoxy-D-manno-octulosonate 8-P + H2O  ->  3-deoxy-D-manno-octulosonate + phosphate
         In pathways
         LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)
         KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)
         PWY-5111 (PWY-5111)
         PWY-1269 (CMP-KDO biosynthesis I)

- EG12801 (mlaF) (b3195)
   Products of gene:
     - YRBF-MONOMER (MlaF)
     - ABC-45-CPLX (phospholipid ABC transporter)

- EG12799 (mlaD) (b3193)
   Products of gene:
     - EG12799-MONOMER (MlaD)
     - ABC-45-CPLX (phospholipid ABC transporter)



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 200
Effective number of orgs (counting one per cluster within 468 clusters): 131

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A4
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110184
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103314
XFAS405440 ncbi Xylella fastidiosa M124
XFAS183190 ncbi Xylella fastidiosa Temecula14
XFAS160492 ncbi Xylella fastidiosa 9a5c4
XCAM487884 Xanthomonas campestris pv. paulliniae4
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-104
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80044
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339134
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3064
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106333
VFIS312309 ncbi Vibrio fischeri ES1144
VEIS391735 ncbi Verminephrobacter eiseniae EF01-24
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252594
TCRU317025 ncbi Thiomicrospira crunogena XCL-24
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
SSP94122 ncbi Shewanella sp. ANA-34
SSP644076 Silicibacter sp. TrichCH4B3
SSP292414 ncbi Ruegeria sp. TM10403
SSON300269 ncbi Shigella sonnei Ss0464
SSED425104 ncbi Shewanella sediminis HAW-EB34
SPRO399741 ncbi Serratia proteamaculans 5684
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-14
SLOI323850 ncbi Shewanella loihica PV-44
SLAC55218 Ruegeria lacuscaerulensis3
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB3
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SDEN318161 ncbi Shewanella denitrificans OS2174
SCO ncbi Streptomyces coelicolor A3(2)3
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
SACI56780 ncbi Syntrophus aciditrophicus SB4
RSOL267608 ncbi Ralstonia solanacearum GMI10004
RMET266264 ncbi Ralstonia metallidurans CH343
RFER338969 ncbi Rhodoferax ferrireducens T1183
REUT381666 ncbi Ralstonia eutropha H163
REUT264198 ncbi Ralstonia eutropha JMP1343
RDEN375451 ncbi Roseobacter denitrificans OCh 1143
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-13
PSP296591 ncbi Polaromonas sp. JS6664
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS94
PNAP365044 ncbi Polaromonas naphthalenivorans CJ24
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PMEN399739 ncbi Pseudomonas mendocina ymp4
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 374
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PCAR338963 ncbi Pelobacter carbinolicus DSM 23804
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
NSP387092 ncbi Nitratiruptor sp. SB155-23
NOCE323261 ncbi Nitrosococcus oceani ATCC 197074
NMUL323848 ncbi Nitrosospira multiformis ATCC 251964
NMEN374833 ncbi Neisseria meningitidis 0534424
NMEN272831 ncbi Neisseria meningitidis FAM184
NMEN122587 ncbi Neisseria meningitidis Z24914
NMEN122586 ncbi Neisseria meningitidis MC584
NGON242231 ncbi Neisseria gonorrhoeae FA 10904
NEUT335283 ncbi Nitrosomonas eutropha C913
NEUR228410 ncbi Nitrosomonas europaea ATCC 197183
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSP400668 ncbi Marinomonas sp. MWYL14
MPET420662 ncbi Methylibium petroleiphilum PM14
MFLA265072 ncbi Methylobacillus flagellatus KT4
MCAP243233 ncbi Methylococcus capsulatus Bath4
MAQU351348 ncbi Marinobacter aquaeolei VT84
LPNE400673 ncbi Legionella pneumophila Corby4
LPNE297246 ncbi Legionella pneumophila Paris4
LPNE297245 ncbi Legionella pneumophila Lens4
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 14
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-003
LCHO395495 ncbi Leptothrix cholodnii SP-64
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP375286 ncbi Janthinobacterium sp. Marseille4
JSP290400 ncbi Jannaschia sp. CCS13
ILOI283942 ncbi Idiomarina loihiensis L2TR4
HSOM228400 ncbi Haemophilus somnus 23364
HSOM205914 ncbi Haemophilus somnus 129PT4
HNEP81032 Hyphomonas neptunium3
HINF71421 ncbi Haemophilus influenzae Rd KW204
HINF374930 ncbi Haemophilus influenzae PittEE4
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HHAL349124 ncbi Halorhodospira halophila SL14
HDUC233412 ncbi Haemophilus ducreyi 35000HP4
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HARS204773 ncbi Herminiimonas arsenicoxydans4
GURA351605 ncbi Geobacter uraniireducens Rf44
GSUL243231 ncbi Geobacter sulfurreducens PCA4
GMET269799 ncbi Geobacter metallireducens GS-154
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-003
FTUL418136 ncbi Francisella tularensis tularensis WY96-34183
FTUL401614 ncbi Francisella novicida U1123
FTUL393115 ncbi Francisella tularensis tularensis FSC1983
FTUL393011 ncbi Francisella tularensis holarctica OSU183
FTUL351581 Francisella tularensis holarctica FSC2003
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250173
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough3
DSHI398580 ncbi Dinoroseobacter shibae DFL 123
DPSY177439 ncbi Desulfotalea psychrophila LSv543
DNOD246195 ncbi Dichelobacter nodosus VCS1703A3
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G203
DARO159087 ncbi Dechloromonas aromatica RCB4
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CSP501479 Citreicella sp. SE454
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CPSY167879 ncbi Colwellia psychrerythraea 34H4
CJAP155077 Cellvibrio japonicus3
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1113
CBUR360115 ncbi Coxiella burnetii RSA 3313
CBUR227377 ncbi Coxiella burnetii RSA 4933
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTHA271848 ncbi Burkholderia thailandensis E2644
BSP36773 Burkholderia sp.4
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii3
BPER257313 ncbi Bordetella pertussis Tohama I3
BPAR257311 ncbi Bordetella parapertussis 128223
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BBRO257310 ncbi Bordetella bronchiseptica RB503
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1003
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
ASP76114 ncbi Aromatoleum aromaticum EbN14
ASP62977 ncbi Acinetobacter sp. ADP14
ASP62928 ncbi Azoarcus sp. BH724
ASP232721 ncbi Acidovorax sp. JS423
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AHYD196024 Aeromonas hydrophila dhakensis4
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232704
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ABAU360910 ncbi Bordetella avium 197N3
AAVE397945 ncbi Acidovorax citrulli AAC00-14
AAEO224324 ncbi Aquifex aeolicus VF53


Names of the homologs of the genes in the group in each of these orgs
  G7665   G7663   EG12801   EG12799   
YPSE349747 YPSIP31758_0443YPSIP31758_0445YPSIP31758_0448YPSIP31758_0450
YPSE273123 YPTB3524YPTB3522YPTB3519YPTB3517
YPES386656 YPDSF_0317YPDSF_0319YPDSF_0322YPDSF_0324
YPES377628 YPN_3462YPN_3460YPN_3457YPN_3455
YPES360102 YPA_3723YPA_3725YPA_3728YPA_3730
YPES349746 YPANGOLA_A1151YPANGOLA_A1149YPANGOLA_A1146YPANGOLA_A1144
YPES214092 YPO3580YPO3578YPO3575YPO3573
YPES187410 Y0152Y0150Y0146Y0144
YENT393305 YE3757YE3755YE3752YE3750
XORY360094 XOOORF_4032XOOORF_4030XOOORF_5078XOOORF_5080
XORY342109 XOO1185XOO1187XOO0281XOO0279
XORY291331 XOO1286XOO1288XOO0310XOO0308
XFAS405440 XFASM12_0758XFASM12_0760XFASM12_1816XFASM12_1818
XFAS183190 PD_0639PD_0641PD_1654PD_1656
XFAS160492 XF1410XF1412XF0421XF0419
XCAM487884 XCC-B100_1360XCC-B100_1362XCC-B100_4427XCC-B100_4429
XCAM316273 XCAORF_3171XCAORF_3169XCAORF_4551XCAORF_4553
XCAM314565 XC_1313XC_1315XC_4296XC_4298
XCAM190485 XCC2800XCC2798XCC4207XCC4209
XAXO190486 XAC2970XAC2968XAC4339XAC4341
VVUL216895 VV1_0690VV1_0688VV1_0685VV1_0683
VVUL196600 VV0450VV0452VV0455VV0457
VPAR223926 VP2668VP2664VP2662
VFIS312309 VF0389VF0391VF0394VF0396
VEIS391735 VEIS_0576VEIS_0153VEIS_2397VEIS_2399
VCHO345073 VC0395_A2107VC0395_A2105VC0395_A2102VC0395_A2100
VCHO VC2527VC2524VC2520VC2518
TDEN292415 TBD_0535TBD_0537TBD_1900TBD_1898
TCRU317025 TCR_0974TCR_0976TCR_0979TCR_0981
STYP99287 STM3318STM3316STM3313STM3311
SSP94122 SHEWANA3_0674SHEWANA3_0676SHEWANA3_0678SHEWANA3_0680
SSP644076 SCH4B_3386SCH4B_1992SCH4B_2116
SSP292414 TM1040_0025TM1040_1781TM1040_1521
SSON300269 SSO_3348SSO_3346SSO_3343SSO_3341
SSED425104 SSED_0728SSED_0730SSED_0733SSED_0735
SPRO399741 SPRO_4365SPRO_4363SPRO_4360SPRO_4358
SPEA398579 SPEA_3614SPEA_3612SPEA_3609SPEA_3607
SONE211586 SO_3959SO_3957SO_3954SO_3952
SLOI323850 SHEW_3309SHEW_3307SHEW_3304SHEW_3302
SLAC55218 SL1157_0839SL1157_2673SL1157_2120
SHIGELLA YHBNYRBIVPSAVPSC
SHAL458817 SHAL_3703SHAL_3701SHAL_3698SHAL_3696
SGLO343509 SG0201SG0203SG0205SG0207
SFUM335543 SFUM_2073SFUM_0401SFUM_0403
SFLE373384 SFV_3230SFV_3228SFV_3225SFV_3223
SFLE198214 AAN44706.1AAN44704.1AAN44701.1AAN44699.1
SENT454169 SEHA_C3615SEHA_C3613SEHA_C3610SEHA_C3608
SENT321314 SCH_3256SCH_3254SCH_3251SCH_3249
SENT295319 SPA3185SPA3183SPA3180SPA3178
SENT220341 STY3497STY3495STY3492STY3490
SENT209261 T3235T3233T3230T3228
SDYS300267 SDY_3381SDY_3379SDY_3376SDY_3374
SDEN318161 SDEN_0491SDEN_0493SDEN_0496SDEN_0498
SCO SCO4880SCO2422SCO2415
SBOY300268 SBO_3182SBO_3184SBO_3187SBO_3189
SBAL402882 SHEW185_0688SHEW185_0690SHEW185_0692SHEW185_0694
SBAL399599 SBAL195_0718SBAL195_0720SBAL195_0722SBAL195_0724
SACI56780 SYN_00947SYN_00949SYN_00410SYN_01264
RSOL267608 RSC0410RSC0412RSC2962RSC2960
RMET266264 RMET_0305RMET_3259RMET_3257
RFER338969 RFER_4236RFER_2935RFER_2937
REUT381666 H16_A0389H16_A3427H16_A3425
REUT264198 REUT_A0357REUT_A3122REUT_A3120
RDEN375451 RD1_0370RD1_3243RD1_2854
PSYR223283 PSPTO_4451PSPTO_4449PSPTO_4447PSPTO_4445
PSYR205918 PSYR_4145PSYR_4143PSYR_4141PSYR_4139
PSTU379731 PST_1033PST_1035PST_1037PST_1039
PSP312153 PNUC_1908PNUC_0096PNUC_0098
PSP296591 BPRO_4487BPRO_4897BPRO_0793BPRO_0795
PPUT76869 PPUTGB1_0961PPUTGB1_0963PPUTGB1_0965PPUTGB1_0967
PPUT351746 PPUT_0993PPUT_0995PPUT_0997PPUT_0999
PPUT160488 PP_0954PP_0956PP_0958PP_0960
PPRO298386 PBPRA3253PBPRA3251PBPRA3248PBPRA3246
PNAP365044 PNAP_3708PNAP_4107PNAP_0685PNAP_0687
PMUL272843 PM0172PM0524PM0174PM0176
PMEN399739 PMEN_0872PMEN_0874PMEN_0876PMEN_0878
PLUM243265 PLU4039PLU4037PLU4034PLU4032
PING357804 PING_2890PING_2888PING_2887PING_2885
PHAL326442 PSHAA2549PSHAA2547PSHAA2544PSHAA2542
PFLU220664 PFL_0917PFL_0919PFL_0921PFL_0923
PFLU216595 PFLU0884PFLU0886PFLU0888PFLU0890
PFLU205922 PFL_0859PFL_0861PFL_0863PFL_0865
PENT384676 PSEEN1095PSEEN1097PSEEN1099PSEEN1101
PCAR338963 PCAR_1940PCAR_1942PCAR_2750PCAR_0449
PATL342610 PATL_0566PATL_0564PATL_0561PATL_0559
PAER208964 PA4460PA4458PA4456PA4454
PAER208963 PA14_57920PA14_57900PA14_57880PA14_57850
NSP387092 NIS_0778NIS_1034NIS_1335
NOCE323261 NOC_2791NOC_2789NOC_2786NOC_2784
NMUL323848 NMUL_A0086NMUL_A0088NMUL_A2749NMUL_A2747
NMEN374833 NMCC_1787NMCC_1789NMCC_0249NMCC_0251
NMEN272831 NMC1813NMC1815NMC1938NMC1936
NMEN122587 NMA2132NMA2134NMA0485NMA0487
NMEN122586 NMB_0355NMB_0353NMB_1966NMB_1964
NGON242231 NGO1606NGO1608NGO2116NGO2118
NEUT335283 NEUT_2301NEUT_0851NEUT_0853
NEUR228410 NE0064NE2384NE2382
MSUC221988 MS1715MS0995MS1713MS1711
MSP400668 MMWYL1_2416MMWYL1_1125MMWYL1_2413MMWYL1_2411
MPET420662 MPE_A0150MPE_A3808MPE_A3101MPE_A3099
MFLA265072 MFLA_0140MFLA_0138MFLA_0237MFLA_0239
MCAP243233 MCA_0743MCA_0745MCA_1969MCA_1967
MAQU351348 MAQU_2713MAQU_2711MAQU_2709MAQU_2707
LPNE400673 LPC_2458LPC_2456LPC_2454LPC_2452
LPNE297246 LPP0899LPP0901LPP0903LPP0905
LPNE297245 LPL0868LPL0870LPL0872LPL0874
LPNE272624 LPG0837LPG0839LPG0841LPG0843
LINT363253 LI0453LI0232LI0233
LCHO395495 LCHO_4227LCHO_0183LCHO_3394LCHO_3392
KPNE272620 GKPORF_B2945GKPORF_B2943GKPORF_B2940GKPORF_B2938
JSP375286 MMA_3350MMA_3348MMA_3299MMA_3297
JSP290400 JANN_0226JANN_1737JANN_2719
ILOI283942 IL0398IL0400IL0403IL0405
HSOM228400 HSM_1592HSM_1397HSM_1590HSM_1588
HSOM205914 HS_1175HS_0919HS_1173HS_1171
HNEP81032 HNE_0204HNE_2920HNE_2253
HINF71421 HI_1149HI_1679HI_1087HI_1085
HINF374930 CGSHIEE_06300CGSHIEE_03665CGSHIEE_06630CGSHIEE_06640
HINF281310 NTHI1317NTHI1982NTHI1250NTHI1248
HHAL349124 HHAL_2124HHAL_2122HHAL_2120HHAL_2118
HDUC233412 HD_0587HD_0297HD_0259HD_0257
HCHE349521 HCH_05318HCH_05316HCH_05314HCH_05312
HARS204773 HEAR3107HEAR3105HEAR3080HEAR3078
GURA351605 GURA_2974GURA_2976GURA_1040GURA_1041
GSUL243231 GSU_1889GSU_1892GSU_0816GSU_0815
GMET269799 GMET_1281GMET_1279GMET_0787GMET_0786
FTUL458234 FTA_1121FTA_0546FTA_0544
FTUL418136 FTW_0934FTW_0326FTW_0324
FTUL401614 FTN_0905FTN_0328FTN_0326
FTUL393115 FTF1027CFTF1608FTF1610
FTUL393011 FTH_1038FTH_0514FTH_0512
FTUL351581 FTL_1062FTL_0517FTL_0515
FPHI484022 FPHI_1710FPHI_0497FPHI_0499
ESP42895 ENT638_3636ENT638_3634ENT638_3631ENT638_3629
EFER585054 EFER_3177EFER_3175EFER_3172EFER_3170
ECOO157 YHBNYRBIYRBFYRBD
ECOL83334 ECS4079ECS4077ECS4074ECS4072
ECOL585397 ECED1_3858ECED1_3856ECED1_3853ECED1_3851
ECOL585057 ECIAI39_3695ECIAI39_3693ECIAI39_3690ECIAI39_3688
ECOL585056 ECUMN_3680ECUMN_3678ECUMN_3675ECUMN_3673
ECOL585055 EC55989_3618EC55989_3616EC55989_3613EC55989_3611
ECOL585035 ECS88_3583ECS88_3581ECS88_3577ECS88_3575
ECOL585034 ECIAI1_3348ECIAI1_3346ECIAI1_3343ECIAI1_3341
ECOL481805 ECOLC_0500ECOLC_0502ECOLC_0505ECOLC_0507
ECOL469008 ECBD_0542ECBD_0544ECBD_0547ECBD_0549
ECOL439855 ECSMS35_3496ECSMS35_3494ECSMS35_3491ECSMS35_3489
ECOL413997 ECB_03065ECB_03063ECB_03060ECB_03058
ECOL409438 ECSE_3484ECSE_3482ECSE_3479ECSE_3477
ECOL405955 APECO1_3235APECO1_3237APECO1_3240APECO1_3242
ECOL364106 UTI89_C3636UTI89_C3634UTI89_C3631UTI89_C3629
ECOL362663 ECP_3288ECP_3286ECP_3282ECP_3280
ECOL331111 ECE24377A_3688ECE24377A_3686ECE24377A_3683ECE24377A_3681
ECOL316407 ECK3189:JW3167:B3200ECK3187:JW3165:B3198ECK3184:JW3162:B3195ECK3182:JW3160:B3193
ECOL199310 C3960C3958C3955C3953
ECAR218491 ECA0290ECA0292ECA0295ECA0297
DVUL882 DVU_1625DVU_1245DVU_1244
DSHI398580 DSHI_3586DSHI_2380DSHI_1391
DPSY177439 DP0764DP2287DP2286
DNOD246195 DNO_0534DNO_0859DNO_0857
DDES207559 DDE_1767DDE_2298DDE_2299
DARO159087 DARO_3421DARO_3419DARO_3402DARO_3400
CVIO243365 CV_3330CV_3328CV_0449CV_0447
CSP501479 CSE45_3596CSE45_5498CSE45_1759CSE45_0357
CSAL290398 CSAL_2224CSAL_2222CSAL_2220CSAL_2218
CPSY167879 CPS_4541CPS_4539CPS_4536CPS_4534
CJAP155077 CJA_2803CJA_2801CJA_1609
CBUR434922 COXBU7E912_0760COXBU7E912_0762COXBU7E912_0742
CBUR360115 COXBURSA331_A1205COXBURSA331_A1203COXBURSA331_A1223
CBUR227377 CBU_0747CBU_0749CBU_0728
BVIE269482 BCEP1808_2894BCEP1808_2892BCEP1808_0393BCEP1808_0395
BTHA271848 BTH_I0488BTH_I0490BTH_I3004BTH_I3002
BSP36773 BCEP18194_A6119BCEP18194_A6117BCEP18194_A3512BCEP18194_A3514
BPSE320373 BURPS668_0583BURPS668_0585BURPS668_3677BURPS668_3675
BPSE320372 BURPS1710B_A0809BURPS1710B_A0811BURPS1710B_A4002BURPS1710B_A4000
BPSE272560 BPSL0535BPSL0537BPSL3150BPSL3148
BPET94624 BPET0452BPET0148BPET0146
BPER257313 BP0700BP3757BP3759
BPAR257311 BPP4029BPP4257BPP4259
BMAL320389 BMA10247_2944BMA10247_2946BMA10247_2776BMA10247_2774
BMAL320388 BMASAVP1_A0074BMASAVP1_A0072BMASAVP1_A3228BMASAVP1_A3230
BMAL243160 BMA_3105BMA_3103BMA_2726BMA_2724
BCEN331272 BCEN2424_2789BCEN2424_2787BCEN2424_0414BCEN2424_0416
BCEN331271 BCEN_2175BCEN_2173BCEN_2693BCEN_2691
BBRO257310 BB4502BB4844BB4846
BBAC264462 BD0827BD0915BD3413
BAMB398577 BAMMC406_2707BAMMC406_2705BAMMC406_0341BAMMC406_0343
BAMB339670 BAMB_2849BAMB_2847BAMB_0332BAMB_0334
ASP76114 EBA1320EBA1316EBA1313EBA1311
ASP62977 ACIAD1485ACIAD1483ACIAD3244ACIAD3242
ASP62928 AZO0791AZO0793AZO0806AZO0808
ASP232721 AJS_4131AJS_0748AJS_0750
ASAL382245 ASA_0313ASA_0311ASA_0309ASA_0307
APLE434271 APJL_0353APJL_0051APJL_1305APJL_1303
APLE416269 APL_0337APL_0051APL_1292APL_1290
AHYD196024 AHA_3925AHA_3927AHA_3929AHA_3931
AFER243159 AFE_0083AFE_0081AFE_2868AFE_2866
AEHR187272 MLG_2228MLG_2226MLG_2223MLG_2221
ABAU360910 BAV3115BAV3304BAV3306
AAVE397945 AAVE_0417AAVE_4784AAVE_1013AAVE_1015
AAEO224324 AQ_2173AQ_2171AQ_1531


Organism features enriched in list (features available for 188 out of the 200 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00001191392
Disease:Bubonic_plague 0.001064566
Disease:Dysentery 0.001064566
Disease:Gastroenteritis 0.00096281013
Endospores:No 2.493e-937211
Endospores:Yes 9.421e-9153
GC_Content_Range4:0-40 2.330e-2120213
GC_Content_Range4:40-60 1.797e-11109224
GC_Content_Range4:60-100 0.003693659145
GC_Content_Range7:30-40 2.844e-1220166
GC_Content_Range7:50-60 1.066e-1165107
GC_Content_Range7:60-70 0.000744958134
Genome_Size_Range5:0-2 7.842e-1514155
Genome_Size_Range5:2-4 0.000307046197
Genome_Size_Range5:4-6 4.127e-17104184
Genome_Size_Range5:6-10 0.00251532447
Genome_Size_Range9:1-2 3.492e-1014128
Genome_Size_Range9:2-3 0.001627326120
Genome_Size_Range9:4-5 6.124e-85496
Genome_Size_Range9:5-6 1.434e-75088
Genome_Size_Range9:6-8 0.00047332238
Gram_Stain:Gram_Neg 1.589e-38175333
Gram_Stain:Gram_Pos 4.198e-291150
Habitat:Multiple 0.002619071178
Habitat:Specialized 0.0047602953
Motility:No 3.663e-823151
Motility:Yes 1.947e-8117267
Optimal_temp.:35-37 3.052e-71313
Oxygen_Req:Anaerobic 2.096e-614102
Oxygen_Req:Facultative 3.501e-689201
Pathogenic_in:Animal 0.00151113266
Pathogenic_in:No 4.640e-649226
Pathogenic_in:Plant 0.00098861115
Shape:Coccobacillus 0.0056304811
Shape:Coccus 0.00001961182
Shape:Rod 1.539e-14153347
Shape:Spiral 0.0001656234
Temp._range:Hyperthermophilic 0.0012102123
Temp._range:Mesophilic 0.0003223167473
Temp._range:Psychrophilic 0.005680079
Temp._range:Thermophilic 0.0001161235



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 364
Effective number of orgs (counting one per cluster within 468 clusters): 286

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XAUT78245 ncbi Xanthobacter autotrophicus Py21
WPIP955 Wolbachia pipientis1
WPIP80849 Wolbachia endosymbiont of Brugia malayi1
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX1
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 71
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE292459 ncbi Symbiobacterium thermophilum IAM 148630
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSP84588 ncbi Synechococcus sp. WH 81021
SSP64471 ncbi Synechococcus sp. CC93111
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)1
SSP321327 ncbi Synechococcus sp. JA-3-3Ab1
SSP1148 ncbi Synechocystis sp. PCC 68031
SSP1131 Synechococcus sp. CC96051
SSOL273057 ncbi Sulfolobus solfataricus P21
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138551
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMEL266834 ncbi Sinorhizobium meliloti 10211
SMED366394 ncbi Sinorhizobium medicae WSM4191
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington1
RSP357808 ncbi Roseiflexus sp. RS-10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa1
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith1
RPRO272947 ncbi Rickettsia prowazekii Madrid E1
RPAL316058 ncbi Rhodopseudomonas palustris HaA21
RPAL316057 ncbi Rhodopseudomonas palustris BisB51
RPAL316056 ncbi Rhodopseudomonas palustris BisB181
RPAL258594 ncbi Rhodopseudomonas palustris CGA0091
RMAS416276 ncbi Rickettsia massiliae MTU51
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38411
RCON272944 ncbi Rickettsia conorii Malish 71
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RALB246199 Ruminococcus albus 80
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PRUM264731 ncbi Prevotella ruminicola 231
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong1
OIHE221109 ncbi Oceanobacillus iheyensis HTE8310
OCAR504832 ncbi Oligotropha carboxidovorans OM51
OANT439375 ncbi Ochrobactrum anthropi ATCC 491881
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP103690 ncbi Nostoc sp. PCC 71201
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NHAM323097 ncbi Nitrobacter hamburgensis X141
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124441
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP409 Methylobacterium sp.1
MSP266779 ncbi Chelativorans sp. BNC11
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS101
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLOT266835 ncbi Mesorhizobium loti MAFF3030991
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MEXT419610 ncbi Methylobacterium extorquens PA11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8431
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A1
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
HACI382638 ncbi Helicobacter acinonychis Sheeba1
GVIO251221 ncbi Gloeobacter violaceus PCC 74211
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-20
GKAU235909 ncbi Geobacillus kaustophilus HTA4260
GFOR411154 ncbi Gramella forsetii KT08031
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
ECAN269484 ncbi Ehrlichia canis Jake1
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRED349161 ncbi Desulfotomaculum reducens MI-11
DRAD243230 ncbi Deinococcus radiodurans R10
DHAF138119 ncbi Desulfitobacterium hafniense Y510
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA1
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CJEI306537 ncbi Corynebacterium jeikeium K4111
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29011
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFET360106 ncbi Campylobacter fetus fetus 82-401
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDIF272563 ncbi Clostridium difficile 6300
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.921
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN1
CBLO203907 ncbi Candidatus Blochmannia floridanus1
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80520
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BWEI315730 ncbi Bacillus weihenstephanensis KBAB40
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHU412694 ncbi Bacillus thuringiensis Al Hakam0
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-270
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BSUI470137 ncbi Brucella suis ATCC 234451
BSUI204722 ncbi Brucella suis 13301
BSUB ncbi Bacillus subtilis subtilis 1680
BSP376 Bradyrhizobium sp.1
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPUM315750 ncbi Bacillus pumilus SAFR-0320
BOVI236 Brucella ovis1
BMEL359391 ncbi Brucella melitensis biovar Abortus 23081
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M1
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145800
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1101
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BHAL272558 ncbi Bacillus halodurans C-1250
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BCLA66692 ncbi Bacillus clausii KSM-K160
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1020
BCER405917 Bacillus cereus W0
BCER315749 ncbi Bacillus cytotoxicus NVH 391-980
BCER288681 ncbi Bacillus cereus E33L0
BCER226900 ncbi Bacillus cereus ATCC 145790
BCAN483179 ncbi Brucella canis ATCC 233651
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02480
BANT568206 ncbi Bacillus anthracis CDC 6840
BANT261594 ncbi Bacillus anthracis Ames Ancestor0
BANT260799 ncbi Bacillus anthracis Sterne0
BAMY326423 ncbi Bacillus amyloliquefaciens FZB420
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9411
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294131
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.0
APHA212042 ncbi Anaplasma phagocytophilum HZ1
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG10
AMET293826 ncbi Alkaliphilus metalliredigens QYMF0
AMAR234826 ncbi Anaplasma marginale St. Maries1
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ACAU438753 ncbi Azorhizobium caulinodans ORS 5711
ABUT367737 ncbi Arcobacter butzleri RM40181
AAUR290340 ncbi Arthrobacter aurescens TC10


Names of the homologs of the genes in the group in each of these orgs
  G7665   G7663   EG12801   EG12799   
XAUT78245 XAUT_4114
WPIP955 WD_1105
WPIP80849 WB_0028
UURE95667
UURE95664
UPAR505682
UMET351160 RCIX953
TWHI218496
TWHI203267
TVOL273116
TTHE300852
TTHE262724
TTEN273068
TSP28240
TSP1755
TROS309801
TPSE340099
TPET390874
TPEN368408
TPAL243276
TMAR243274
TLET416591
TKOD69014
TFUS269800 TFU_0009
TERY203124
TDEN243275
TACI273075
SWOL335541
STRO369723
STOK273063 ST1422
STHE322159
STHE299768
STHE292459
STHE264199
SSUI391296 SSU98_0420
SSUI391295 SSU05_0433
SSP84588 SYNW0186OR2309
SSP64471 GSYN0263
SSP321332 CYB_1086
SSP321327 CYA_1546
SSP1148 SLL1001
SSP1131 SYNCC9605_0182
SSOL273057 SSO0094
SSAP342451
SRUB309807 SRU_0343
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMEL266834 SMC00175
SMED366394 SMED_1553
SMAR399550
SHAE279808
SGOR29390
SERY405948 SACE_6866
SEPI176280
SEPI176279
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037
SALA317655
SAGA211110
SAGA208435
SAGA205921
SACI330779
RXYL266117
RTYP257363 RT0711
RSP357808
RSAL288705
RRIC452659 RRIOWA_1319
RRIC392021 A1G_06135
RPRO272947 RP724
RPAL316058 RPB_1628
RPAL316057 RPD_1637
RPAL316056 RPC_1453
RPAL258594 RPA3962
RMAS416276 RMA_1143
RLEG216596 RL2660
RCON272944 RC1106
RCAS383372
RALB246199
PTOR263820
PTHE370438
PRUM264731 GFRORF1206
PPEN278197
PMOB403833
PMAR93060
PMAR74547 PMT1912
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PISL384616
PINT246198 PIN_0354
PHOR70601
PFUR186497
PDIS435591 BDI_0168
PAST100379
PARS340102
PAER178306
PACN267747
PABY272844
OTSU357244 OTBS_1584
OIHE221109
OCAR504832 OCAR_5352
OANT439375 OANT_2108
NWIN323098
NSP103690 ALR0180
NSEN222891
NPHA348780
NHAM323097 NHAM_1316
NARO279238 SARO_2844
MTHE349307
MTHE264732
MTHE187420 MTH1071
MSYN262723
MSTA339860
MSP409 M446_4934
MSP266779 MESO_1541
MSP189918 MKMS_0986
MSP164757 MJLS_0996
MSP164756 MMCS_0968
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221 MMAR10_2003
MMAR368407
MMAR267377
MLOT266835 MLL0800
MLEP272631 ML1892
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054 MFLV_5099
MGEN243273
MFLO265311
MEXT419610 MEXT_0892
MCAP340047
MBUR259564
MBOV410289 BCG_0704
MBOV233413 MB0674
MBAR269797
MART243272
MAER449447 MAE_05900
MAEO419665
MACE188937 MA3766
LXYL281090
LWEL386043
LSPH444177
LSAK314315
LREU557436
LPLA220668
LMON265669
LMON169963
LMES203120
LLAC272623
LLAC272622
LJOH257314 LJ_0787
LINT267671 LIC_11858
LINT189518 LA2056
LINN272626
LHEL405566
LGAS324831 LGAS_0545
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LBOR355277 LBJ_1949
LBOR355276 LBL_1335
LBIF456481 LEPBI_I1866
LBIF355278 LBF_1811
LACI272621
KRAD266940
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963 JHP1478
HPYL357544 HPAG1_1519
HPY HP1570
HMUK485914
HMOD498761
HMAR272569
HBUT415426
HAUR316274
HACI382638 HAC_1677
GVIO251221 GLR4114
GTHE420246
GKAU235909
GFOR411154 GFO_1811
FSUC59374 FSU1181
FSP1855
FSP106370
FNUC190304 FN0213
FNOD381764
FMAG334413
FALN326424
ERUM302409 ERGA_CDS_01180
ERUM254945 ERWE_CDS_01220
ELIT314225
EFAE226185
ECHA205920 ECH_0183
ECAN269484 ECAJ_0123
DSP255470
DSP216389
DRED349161 DRED_3209
DRAD243230
DHAF138119
DGEO319795
DETH243164
CVES412965 COSY_0943
CTRA471473
CTRA471472
CTET212717
CSUL444179
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPER289380
CPER195103
CPER195102
CPEL335992
CNOV386415
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEJ407148 C8J_0606
CJEJ360109 JJD26997_1352
CJEJ354242 CJJ81176_0675
CJEJ195099 CJE_0750
CJEJ192222 CJ0647
CJEI306537 JK1711
CHYD246194 CHY_2422
CHUT269798 CHU_3312
CGLU196627 CG0736
CFET360106 CFF8240_1188
CFEL264202
CEFF196164
CDIP257309
CDIF272563
CDES477974
CCUR360105 CCV52592_0456
CCAV227941
CBOT536232
CBOT515621
CBOT508765 CLL_A2335
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CBLO291272 BPEN_044
CBLO203907 BFL043
CBEI290402
CACE272562
CABO218497
BXEN266265
BWEI315730
BTUR314724
BTRI382640
BTHU412694
BTHU281309
BTHE226186 BT_1677
BSUI470137 BSUIS_A1063
BSUI204722 BR_1020
BSUB
BSP376 BRADO5085
BSP107806
BQUI283165
BPUM315750
BOVI236 GBOORF1017
BMEL359391 BAB1_1039
BMEL224914 BMEI0964
BLON206672
BLIC279010
BJAP224911 BLL5893
BHER314723
BHEN283166
BHAL272558
BGAR290434
BFRA295405 BF3282
BFRA272559 BF3121
BCLA66692
BCIC186490
BCER572264
BCER405917
BCER315749
BCER288681
BCER226900
BCAN483179 BCAN_A1035
BBUR224326
BBAC360095
BAPH372461
BAPH198804
BANT592021
BANT568206
BANT261594
BANT260799
BAMY326423
BAFZ390236
BABO262698 BRUAB1_1025
AYEL322098
AVAR240292 AVA_2673
AURANTIMONAS
ASP1667
APHA212042 APH_0045
APER272557
AORE350688
ANAE240017
AMET293826
AMAR234826 AM074
ALAI441768
AFUL224325
ACEL351607
ACAU438753 AZC_2214
ABUT367737 ABU_0978
AAUR290340


Organism features enriched in list (features available for 340 out of the 364 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 2.160e-77592
Arrangment:Clusters 0.00008801717
Disease:Food_poisoning 0.007462399
Disease:Gastroenteritis 0.0015868213
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00247831111
Disease:Wide_range_of_infections 0.00247831111
Endospores:No 1.022e-10159211
Endospores:Yes 6.985e-84853
GC_Content_Range4:0-40 8.490e-25181213
GC_Content_Range4:40-60 1.231e-996224
GC_Content_Range4:60-100 5.839e-662145
GC_Content_Range7:0-30 2.356e-124747
GC_Content_Range7:30-40 6.891e-13134166
GC_Content_Range7:50-60 3.691e-1132107
GC_Content_Range7:60-70 2.113e-655134
Genome_Size_Range5:0-2 1.171e-16132155
Genome_Size_Range5:2-4 0.0006781132197
Genome_Size_Range5:4-6 2.067e-1662184
Genome_Size_Range5:6-10 0.00002721447
Genome_Size_Range9:0-1 3.033e-72727
Genome_Size_Range9:1-2 1.173e-10105128
Genome_Size_Range9:2-3 0.009459380120
Genome_Size_Range9:4-5 3.313e-93096
Genome_Size_Range9:5-6 3.811e-63288
Genome_Size_Range9:6-8 0.00011361138
Gram_Stain:Gram_Neg 2.558e-39120333
Gram_Stain:Gram_Pos 1.739e-25138150
Habitat:Multiple 0.007233692178
Habitat:Specialized 0.00313494053
Motility:No 0.0003635105151
Motility:Yes 0.0000229132267
Optimal_temp.:30-37 0.00005021818
Oxygen_Req:Aerobic 0.000714791185
Oxygen_Req:Anaerobic 1.749e-680102
Oxygen_Req:Facultative 0.0046557104201
Pathogenic_in:No 0.0075351144226
Pathogenic_in:Plant 0.0097528415
Shape:Coccus 1.327e-87082
Shape:Irregular_coccus 0.00008801717
Shape:Rod 2.317e-17154347
Temp._range:Hyperthermophilic 0.00005242223
Temp._range:Mesophilic 0.0009544262473
Temp._range:Thermophilic 0.00005863135



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181720.7354
GLYCOCAT-PWY (glycogen degradation I)2461790.7035
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001930.6653
PWY-1269 (CMP-KDO biosynthesis I)3251950.6240
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911820.6104
AST-PWY (arginine degradation II (AST pathway))1201080.6057
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961830.6057
PWY-5918 (heme biosynthesis I)2721740.6009
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901790.5921
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911400.5867
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481960.5836
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861760.5808
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951400.5739
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251500.5566
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761290.5536
PWY-5913 (TCA cycle variation IV)3011770.5530
PWY-4041 (γ-glutamyl cycle)2791680.5423
TYRFUMCAT-PWY (tyrosine degradation I)1841290.5270
PWY-5386 (methylglyoxal degradation I)3051720.5095
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491110.5091
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831260.5076
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391820.5051
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)1791220.4903
KDOSYN-PWY (KDO transfer to lipid IVA I)1801220.4871
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911260.4823
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491480.4777
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491480.4777
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81720.4702
GLUCONSUPER-PWY (D-gluconate degradation)2291390.4670
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551480.4624
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561080.4596
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291720.4572
POLYISOPRENSYN-PWY (polyisoprenoid biosynthesis (E. coli))116890.4572
REDCITCYC (TCA cycle variation II)1741150.4532
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981910.4526
LIPASYN-PWY (phospholipases)2121300.4495
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4221950.4378
GLUCARDEG-PWY (D-glucarate degradation I)1521030.4339
GALACTITOLCAT-PWY (galactitol degradation)73640.4336
PWY0-1182 (trehalose degradation II (trehalase))70610.4194
PWY-5669 (phosphatidylethanolamine biosynthesis I)4161910.4194
PWY-5783 (octaprenyl diphosphate biosynthesis)1651060.4132
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96740.4112
PWY-5084 (2-ketoglutarate dehydrogenase complex)3261640.4085
PWY-5148 (acyl-CoA hydrolysis)2271300.4081
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001550.4039



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7663   EG12801   EG12799   
G76650.9997630.9993960.999331
G76630.9993830.999315
EG128010.999827
EG12799



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PAIRWISE BLAST SCORES:

  G7665   G7663   EG12801   EG12799   
G76650.0f0---
G7663-0.0f0--
EG12801--0.0f0-
EG12799---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ABC-45-CPLX (phospholipid ABC transporter) (degree of match pw to cand: 0.400, degree of match cand to pw: 0.500, average score: 0.999)
  Genes in pathway or complex:
             0.9983 0.9978 G7658 (mlaB) G7658-MONOMER (MlaB)
   *in cand* 0.9996 0.9993 EG12799 (mlaD) EG12799-MONOMER (MlaD)
             0.9996 0.9993 EG12800 (mlaE) YRBE-MONOMER (MlaE)
   *in cand* 0.9997 0.9994 EG12801 (mlaF) YRBF-MONOMER (MlaF)
             0.9995 0.9992 G7659 (mlaC) G7659-MONOMER (MlaC)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9993 G7663 (kdsC) G7663-MONOMER (3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer)
   *in cand* 0.9996 0.9993 G7665 (lptA) YHBN-MONOMER (LptA)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG12799 EG12801 G7663 G7665 (centered at G7663)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7665   G7663   EG12801   EG12799   
191/623249/623306/623240/623
AAEO224324:0:Tyes4574550-
AAVE397945:0:Tyes04291587589
ABAC204669:0:Tyes-8840-
ABAU360910:0:Tyes-0190192
ABOR393595:0:Tyes02--
ABUT367737:0:Tyes-0--
ACAU438753:0:Tyes--0-
ACRY349163:8:Tyes--28590
ADEH290397:0:Tyes-10470-
AEHR187272:0:Tyes7520
AFER243159:0:Tyes2027482746
AHYD196024:0:Tyes0246
AMAR234826:0:Tyes---0
AMAR329726:9:Tyes-0120-
APHA212042:0:Tyes---0
APLE416269:0:Tyes293012521250
APLE434271:0:Tno299012371235
ASAL382245:5:Tyes6420
ASP232721:2:Tyes-330002
ASP62928:0:Tyes021517
ASP62977:0:Tyes2016221620
ASP76114:2:Tyes7520
AVAR240292:3:Tyes--0-
BABO262698:1:Tno--0-
BAMB339670:3:Tno2582258002
BAMB398577:3:Tno2397239502
BBAC264462:0:Tyes-0842395
BBRO257310:0:Tyes-0342344
BCAN483179:1:Tno--0-
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OANT439375:5:Tyes--0-
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SCO:2:Fyes-250570
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VVUL216895:1:Tno7520
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WPIP955:0:Tyes---0
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XAUT78245:1:Tyes--0-
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YPES386656:2:Tno0257
YPSE273123:2:Tno7520
YPSE349747:2:Tno0257
ZMOB264203:0:Tyes--6900



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