CANDIDATE ID: 295

CANDIDATE ID: 295

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9973350e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    0.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7107 (wza) (b2062)
   Products of gene:
     - G7107-MONOMER (lipoprotein required for capsular polysaccharide translocation through the outer membrane)
     - CPLX0-7529 (capsular polysaccharide export apparatus)

- G7105 (wzc) (b2060)
   Products of gene:
     - G7105-MONOMER (tyrosine kinase involved in colanic acid biosynthesis)
       Reactions:
        ATP + a protein L-tyrosine  =  a protein-L-tyrosine phosphate + ADP
     - CPLX0-7529 (capsular polysaccharide export apparatus)

- G6504 (gfcE) (b0983)
   Products of gene:
     - G6504-MONOMER (predicted exopolysaccharide export protein)

- EG11826 (etk) (b0981)
   Products of gene:
     - EG11826-MONOMER (autophosphorylating protein tyrosine kinase)
       Reactions:
        ATP + a protein L-tyrosine  ->  ADP + a protein-L-tyrosine phosphate



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 161
Effective number of orgs (counting one per cluster within 468 clusters): 125

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XAUT78245 ncbi Xanthobacter autotrophicus Py23
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TSP28240 Thermotoga sp.3
TPET390874 ncbi Thermotoga petrophila RKU-14
TLET416591 ncbi Thermotoga lettingae TMO4
TERY203124 ncbi Trichodesmium erythraeum IMS1014
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252594
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
SSP387093 ncbi Sulfurovum sp. NBC37-14
SSON300269 ncbi Shigella sonnei Ss0464
SPRO399741 ncbi Serratia proteamaculans 5684
SMEL266834 ncbi Sinorhizobium meliloti 10213
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB4
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SBOY300268 ncbi Shigella boydii Sb2274
SALA317655 ncbi Sphingopyxis alaskensis RB22564
SACI56780 ncbi Syntrophus aciditrophicus SB3
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170254
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170294
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.14
RSOL267608 ncbi Ralstonia solanacearum GMI10004
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111704
RPAL258594 ncbi Rhodopseudomonas palustris CGA0094
RMET266264 ncbi Ralstonia metallidurans CH344
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38413
RFER338969 ncbi Rhodoferax ferrireducens T1183
REUT381666 ncbi Ralstonia eutropha H164
REUT264198 ncbi Ralstonia eutropha JMP1344
RDEN375451 ncbi Roseobacter denitrificans OCh 1143
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP56811 Psychrobacter sp.4
PSP296591 ncbi Polaromonas sp. JS6664
PSP117 Pirellula sp.3
PPRO298386 ncbi Photobacterium profundum SS94
PNAP365044 ncbi Polaromonas naphthalenivorans CJ24
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PMOB403833 ncbi Petrotoga mobilis SJ954
PLUT319225 ncbi Chlorobium luteolum DSM 2734
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PGIN242619 ncbi Porphyromonas gingivalis W834
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PDIS435591 ncbi Parabacteroides distasonis ATCC 85034
PCRY335284 ncbi Psychrobacter cryohalolentis K54
PCAR338963 ncbi Pelobacter carbinolicus DSM 23804
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PARC259536 ncbi Psychrobacter arcticus 273-44
OCAR504832 ncbi Oligotropha carboxidovorans OM53
NSP103690 ncbi Nostoc sp. PCC 71204
NOCE323261 ncbi Nitrosococcus oceani ATCC 197074
NMUL323848 ncbi Nitrosospira multiformis ATCC 251964
NHAM323097 ncbi Nitrobacter hamburgensis X143
NEUT335283 ncbi Nitrosomonas eutropha C914
NEUR228410 ncbi Nitrosomonas europaea ATCC 197184
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124444
MXAN246197 ncbi Myxococcus xanthus DK 16224
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSP409 Methylobacterium sp.3
MSP266779 ncbi Chelativorans sp. BNC14
MPET420662 ncbi Methylibium petroleiphilum PM14
MLOT266835 ncbi Mesorhizobium loti MAFF3030993
MFLA265072 ncbi Methylobacillus flagellatus KT4
MCAP243233 ncbi Methylococcus capsulatus Bath4
MAER449447 ncbi Microcystis aeruginosa NIES-8434
LCHO395495 ncbi Leptothrix cholodnii SP-64
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP375286 ncbi Janthinobacterium sp. Marseille4
HNEP81032 Hyphomonas neptunium4
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HARS204773 ncbi Herminiimonas arsenicoxydans4
GVIO251221 ncbi Gloeobacter violaceus PCC 74214
GURA351605 ncbi Geobacter uraniireducens Rf44
GSUL243231 ncbi Geobacter sulfurreducens PCA4
GMET269799 ncbi Geobacter metallireducens GS-154
GFOR411154 ncbi Gramella forsetii KT08034
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S854
FJOH376686 ncbi Flavobacterium johnsoniae UW1014
ESP42895 Enterobacter sp.4
ELIT314225 ncbi Erythrobacter litoralis HTCC25944
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough4
DPSY177439 ncbi Desulfotalea psychrophila LSv544
DOLE96561 ncbi Desulfococcus oleovorans Hxd34
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G204
CSP78 Caulobacter sp.4
CSP501479 Citreicella sp. SE454
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CPSY167879 ncbi Colwellia psychrerythraea 34H4
CJAP155077 Cellvibrio japonicus3
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334064
CCHL340177 ncbi Chlorobium chlorochromatii CaD34
CAULO ncbi Caulobacter crescentus CB154
BXEN266265 ncbi Burkholderia xenovorans LB4004
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54824
BTHA271848 ncbi Burkholderia thailandensis E2644
BSP376 Bradyrhizobium sp.4
BSP36773 Burkholderia sp.4
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1104
BFRA295405 ncbi Bacteroides fragilis YCH464
BFRA272559 ncbi Bacteroides fragilis NCTC 93434
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
AVAR240292 ncbi Anabaena variabilis ATCC 294134
ASP76114 ncbi Aromatoleum aromaticum EbN14
ASP62977 ncbi Acinetobacter sp. ADP14
ASP62928 ncbi Azoarcus sp. BH724
AMAR329726 ncbi Acaryochloris marina MBIC110174
AHYD196024 Aeromonas hydrophila dhakensis4
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232704
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C4
ACRY349163 ncbi Acidiphilium cryptum JF-54
ABOR393595 ncbi Alcanivorax borkumensis SK24
ABAU360910 ncbi Bordetella avium 197N4
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3454


Names of the homologs of the genes in the group in each of these orgs
  G7107   G7105   G6504   EG11826   
XAUT78245 XAUT_3820XAUT_3552XAUT_3820
VVUL216895 VV1_0786VV1_0781VV1_0786VV1_0781
VVUL196600 VV0337VV0340VV0337VV0340
VPAR223926 VPA1602VPA1604VPA1602VPA1604
VFIS312309 VF0162VF0165VF0162VF0165
VCHO345073 VC0395_A0460VC0395_A0461VC0395_A0460VC0395_A0461
VCHO VC0936VC0937VC0936VC0937
TSP28240 TRQ2_0289TRQ2_0289TRQ2_0284
TPET390874 TPET_0290TPET_0285TPET_0290TPET_0285
TLET416591 TLET_1989TLET_1906TLET_1989TLET_1906
TERY203124 TERY_1924TERY_1925TERY_1924TERY_1925
TDEN292415 TBD_1795TBD_1793TBD_1795TBD_1793
STYP99287 STM2118STM2116STM2118STM2116
SSP387093 SUN_1740SUN_1559SUN_1740SUN_1559
SSON300269 SSO_2115SSO_2113SSO_2115SSO_2113
SPRO399741 SPRO_2894SPRO_2893SPRO_1583SPRO_2893
SMEL266834 SMC02274SMC02274SMB20961
SHIGELLA WZAS2248WZAS2248
SGLO343509 SG0978SG0980SG0978SG0980
SFUM335543 SFUM_0530SFUM_3321SFUM_0530SFUM_3321
SFLE373384 SFV_0992SFV_0990SFV_0992SFV_0990
SFLE198214 AAN43663.1AAN43661.1AAN43663.1AAN43661.1
SENT454169 SEHA_C2344SEHA_C2342SEHA_C2344SEHA_C2342
SENT321314 SCH_2119SCH_2117SCH_2119SCH_2117
SENT295319 SPA0748SPA0750SPA0748SPA0750
SENT220341 STY2331STY2329STY2331STY2329
SENT209261 T0754T0756T0754T0756
SDYS300267 SDY_0959SDY_0957SDY_0959SDY_0957
SBOY300268 SBO_2247SBO_2249SBO_2247SBO_2249
SALA317655 SALA_1928SALA_1583SALA_1928SALA_1583
SACI56780 SYN_01205SYN_00779SYN_01205
RSPH349102 RSPH17025_4093RSPH17025_4095RSPH17025_4093RSPH17025_4095
RSPH349101 RSPH17029_2418RSPH17029_3692RSPH17029_2418RSPH17029_3692
RSPH272943 RSP_4086RSP_4084RSP_4086RSP_4084
RSOL267608 RSP1020RSP1018RSP1020RSP1018
RRUB269796 RRU_A3117RRU_A1490RRU_A3117RRU_A1490
RPAL258594 RPA3360RPA3355RPA3360RPA3355
RMET266264 RMET_5851RMET_5849RMET_5851RMET_5849
RLEG216596 RL3664RL3662RL3664
RFER338969 RFER_0658RFER_0660RFER_0658
REUT381666 H16_B0024H16_B0022H16_B0024H16_B0036
REUT264198 REUT_B5370REUT_B5368REUT_B5370REUT_B5368
RDEN375451 RD1_B0026RD1_3835RD1_3835
PSYR223283 PSPTO_3450PSPTO_3443PSPTO_3450PSPTO_3443
PSYR205918 PSYR_3232PSYR_3225PSYR_3232PSYR_3225
PSTU379731 PST_2501PST_1759PST_2501PST_2493
PSP56811 PSYCPRWF_0253PSYCPRWF_0251PSYCPRWF_0253PSYCPRWF_0251
PSP296591 BPRO_1877BPRO_1879BPRO_1877BPRO_1879
PSP117 RB1329RB2464RB2464
PPRO298386 PBPRA2688PBPRA2686PBPRA2688PBPRA2686
PNAP365044 PNAP_3196PNAP_3132PNAP_3196PNAP_3194
PMUL272843 PM1016PM1018PM1016PM1018
PMOB403833 PMOB_1613PMOB_0944PMOB_1613PMOB_0944
PLUT319225 PLUT_1369PLUT_0764PLUT_1369PLUT_0764
PLUM243265 PLU3745PLU3743PLU3745PLU3743
PHAL326442 PSHAA0398PSHAA1780PSHAA0398PSHAA1780
PGIN242619 PG_0437PG_0436PG_0437PG_0436
PFLU216595 PFLU3662PFLU3677PFLU3662PFLU3677
PFLU205922 PFL_3833PFL_3844PFL_3833PFL_3844
PDIS435591 BDI_1473BDI_0018BDI_1146BDI_2223
PCRY335284 PCRYO_0609PCRYO_0611PCRYO_0609PCRYO_0611
PCAR338963 PCAR_1463PCAR_1464PCAR_1463PCAR_1464
PATL342610 PATL_1170PATL_4000PATL_1170PATL_1073
PARC259536 PSYC_0647PSYC_0649PSYC_0647PSYC_0649
OCAR504832 OCAR_6116OCAR_6116OCAR_6114
NSP103690 ALL4388ALR2856ALL4388ALR2856
NOCE323261 NOC_1985NOC_1497NOC_1985NOC_1497
NMUL323848 NMUL_A0242NMUL_A0244NMUL_A0242NMUL_A0244
NHAM323097 NHAM_3057NHAM_3057NHAM_3056
NEUT335283 NEUT_2119NEUT_2120NEUT_2119NEUT_2120
NEUR228410 NE2279NE2280NE2279NE2280
NARO279238 SARO_0753SARO_3224SARO_0753SARO_3224
MXAN246197 MXAN_1915MXAN_1025MXAN_1915MXAN_1025
MSUC221988 MS1487MS1486MS1487MS1486
MSP409 M446_6357M446_6357M446_6092
MSP266779 MESO_2754MESO_0660MESO_2754MESO_0660
MPET420662 MPE_A2734MPE_A0736MPE_A2734MPE_A0736
MLOT266835 MLL8437MLL8437MLR5276
MFLA265072 MFLA_2026MFLA_2024MFLA_2026MFLA_2024
MCAP243233 MCA_0148MCA_1178MCA_0148MCA_1178
MAER449447 MAE_41410MAE_32940MAE_41410MAE_32940
LCHO395495 LCHO_3509LCHO_2365LCHO_2367LCHO_2365
KPNE272620 GKPORF_B1796GKPORF_B1795GKPORF_B1796GKPORF_B1795
JSP375286 MMA_0632MMA_0634MMA_0632MMA_0634
HNEP81032 HNE_2650HNE_1194HNE_2650HNE_1194
HCHE349521 HCH_03428HCH_03426HCH_03428HCH_03426
HARS204773 HEAR0714HEAR0716HEAR0714HEAR0716
GVIO251221 GLR3784GLR4310GLR3784GLR3785
GURA351605 GURA_1669GURA_1670GURA_1669GURA_1670
GSUL243231 GSU_1985GSU_1983GSU_1985GSU_1983
GMET269799 GMET_2030GMET_2028GMET_2030GMET_2028
GFOR411154 GFO_1984GFO_1983GFO_1984GFO_1983
FSUC59374 FSU1216FSU1424FSU1216FSU1424
FJOH376686 FJOH_0353FJOH_0360FJOH_0353FJOH_0360
ESP42895 ENT638_2676ENT638_2715ENT638_2717ENT638_2715
ELIT314225 ELI_06860ELI_12195ELI_06860ELI_12195
EFER585054 EFER_2146EFER_2144EFER_2146EFER_2144
ECOO157 WZAZ3224WZAZ3224
ECOL83334 ECS1139ECS1137ECS1139ECS1137
ECOL585397 ECED1_2408ECED1_2406ECED1_2408ECED1_2406
ECOL585057 ECIAI39_0953ECIAI39_0955ECIAI39_0953ECIAI39_0955
ECOL585056 ECUMN_2398ECUMN_2396ECUMN_2398ECUMN_2396
ECOL585055 EC55989_2318EC55989_2316EC55989_2318EC55989_2316
ECOL585035 ECS88_2159ECS88_2157ECS88_2159ECS88_2157
ECOL585034 ECIAI1_2138ECIAI1_2136ECIAI1_2138ECIAI1_2136
ECOL481805 ECOLC_2613ECOLC_2615ECOLC_2613ECOLC_2615
ECOL469008 ECBD_1593ECBD_1595ECBD_1593ECBD_1595
ECOL439855 ECSMS35_1000ECSMS35_1002ECSMS35_1000ECSMS35_1002
ECOL413997 ECB_01968ECB_01966ECB_01968ECB_01966
ECOL409438 ECSE_2336ECSE_2334ECSE_2336ECSE_2334
ECOL405955 APECO1_1152APECO1_1150APECO1_1152APECO1_1150
ECOL364106 UTI89_C2336UTI89_C2334UTI89_C2336UTI89_C2334
ECOL362663 ECP_2102ECP_2100ECP_2102ECP_2100
ECOL331111 ECE24377A_1099ECE24377A_1097ECE24377A_1099ECE24377A_1097
ECOL316407 ECK2056:JW2047:B2062ECK2054:JW2045:B2060ECK2056:JW2047:B2062ECK2054:JW2045:B2060
ECOL199310 C2589C2586C2589C2586
ECAR218491 ECA1417ECA1419ECA1417ECA1419
DVUL882 DVU_A0038DVU_A0040DVU_A0038DVU_A0040
DPSY177439 DPPB86DPPB84DPPB86DPPB84
DOLE96561 DOLE_1658DOLE_1657DOLE_1658DOLE_1657
DDES207559 DDE_0830DDE_0832DDE_0830DDE_0832
CSP78 CAUL_2079CAUL_4816CAUL_2079CAUL_4816
CSP501479 CSE45_0334CSE45_5507CSE45_5506CSE45_5507
CSAL290398 CSAL_1712CSAL_1713CSAL_1712CSAL_1713
CPSY167879 CPS_0578CPS_0580CPS_0578CPS_0580
CJAP155077 CJA_0624CJA_0622CJA_3424
CHUT269798 CHU_2882CHU_0880CHU_2882CHU_0880
CCHL340177 CAG_0648CAG_0649CAG_0648CAG_0649
CAULO CC0169CC0164CC0169CC0164
BXEN266265 BXE_B2257BXE_B1726BXE_B1728BXE_B1726
BVIE269482 BCEP1808_4204BCEP1808_6524BCEP1808_4204BCEP1808_6524
BTHE226186 BT_1356BT_0482BT_1654BT_0482
BTHA271848 BTH_II0546BTH_I1354BTH_II0546BTH_II0547
BSP376 BRADO4841BRADO4812BRADO4841BRADO7056
BSP36773 BCEP18194_B1817BCEP18194_C7398BCEP18194_B2273BCEP18194_B2272
BPSE320373 BURPS668_A2620BURPS668_3220BURPS668_A2620BURPS668_3220
BPSE320372 BURPS1710B_B1074BURPS1710B_A3542BURPS1710B_B1074BURPS1710B_B1073
BPSE272560 BPSS1831BPSL2778BPSS1831BPSL2778
BMAL320389 BMA10247_2515BMA10247_A0101BMA10247_2515BMA10247_A0101
BMAL320388 BMASAVP1_A2893BMASAVP1_1245BMASAVP1_A2893BMASAVP1_1245
BMAL243160 BMA_0047BMA_A0085BMA_0047BMA_A0085
BJAP224911 BLL2379BLL2362BLL2379BLL2362
BFRA295405 BF1932BF2769BF1222BF2769
BFRA272559 BF2000BF2784BF1187BF2784
BCEN331272 BCEN2424_3823BCEN2424_3824BCEN2424_3823BCEN2424_3824
BCEN331271 BCEN_4540BCEN_4539BCEN_4540BCEN_4539
BAMB398577 BAMMC406_3726BAMMC406_3694BAMMC406_3726BAMMC406_5907
BAMB339670 BAMB_5549BAMB_6175BAMB_5549BAMB_5550
AVAR240292 AVA_3287AVA_1045AVA_3287AVA_1045
ASP76114 EBA4247EBA6797EBA4247EBA6797
ASP62977 ACIAD0070ACIAD0068ACIAD0070ACIAD0068
ASP62928 AZO3283AZO2240AZO2242AZO2240
AMAR329726 AM1_A0080AM1_0407AM1_2021AM1_0407
AHYD196024 AHA_2879AHA_2877AHA_2879AHA_2877
AFER243159 AFE_1742AFE_1741AFE_1742AFE_1741
AEHR187272 MLG_0799MLG_0800MLG_0799MLG_0800
ADEH290397 ADEH_4275ADEH_4274ADEH_4275ADEH_4274
ACRY349163 ACRY_2963ACRY_1523ACRY_2963ACRY_1523
ABOR393595 ABO_0905ABO_0907ABO_0905ABO_0907
ABAU360910 BAV2639BAV2650BAV2639BAV2650
ABAC204669 ACID345_0834ACID345_0835ACID345_3311ACID345_0835


Organism features enriched in list (features available for 148 out of the 161 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0000102892
Disease:Dysentery 0.000247966
Disease:Gastroenteritis 0.0047353813
Endospores:No 0.000617338211
Endospores:Yes 0.0000156253
GC_Content_Range4:0-40 1.417e-238213
GC_Content_Range4:40-60 2.841e-885224
GC_Content_Range4:60-100 0.000093554145
GC_Content_Range7:30-40 1.766e-158166
GC_Content_Range7:50-60 1.508e-1156107
GC_Content_Range7:60-70 0.000014953134
Genome_Size_Range5:0-2 2.250e-221155
Genome_Size_Range5:2-4 0.006771839197
Genome_Size_Range5:4-6 2.547e-1078184
Genome_Size_Range5:6-10 5.405e-93047
Genome_Size_Range9:1-2 1.029e-171128
Genome_Size_Range9:2-3 0.000024514120
Genome_Size_Range9:4-5 8.242e-64296
Genome_Size_Range9:5-6 0.00022523688
Genome_Size_Range9:6-8 5.229e-82538
Gram_Stain:Gram_Neg 2.836e-20130333
Gram_Stain:Gram_Pos 1.753e-211150
Habitat:Host-associated 0.000694637206
Habitat:Multiple 0.001536159178
Motility:No 0.000045021151
Motility:Yes 1.362e-999267
Optimal_temp.:20-30 0.001308067
Optimal_temp.:30 0.0034181915
Oxygen_Req:Facultative 0.002876164201
Shape:Coccus 1.334e-6582
Shape:Rod 1.475e-12123347
Shape:Spiral 0.0004212134
Temp._range:Psychrophilic 0.008905969
Temp._range:Thermophilic 0.0019738235



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 278
Effective number of orgs (counting one per cluster within 468 clusters): 213

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317580
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329530
YPES386656 ncbi Yersinia pestis Pestoides F0
YPES377628 ncbi Yersinia pestis Nepal5160
YPES360102 ncbi Yersinia pestis Antiqua0
YPES349746 ncbi Yersinia pestis Angola0
YPES214092 ncbi Yersinia pestis CO920
YPES187410 ncbi Yersinia pestis KIM 100
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80810
XCAM487884 Xanthomonas campestris pv. paulliniae1
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VEIS391735 ncbi Verminephrobacter eiseniae EF01-20
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE292459 ncbi Symbiobacterium thermophilum IAM 148630
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SRUB309807 ncbi Salinibacter ruber DSM 138551
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE171101 ncbi Streptococcus pneumoniae R60
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23380
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SCO ncbi Streptomyces coelicolor A3(2)0
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SARE391037 ncbi Salinispora arenicola CNS-2050
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316058 ncbi Rhodopseudomonas palustris HaA21
RPAL316056 ncbi Rhodopseudomonas palustris BisB180
RPAL316055 ncbi Rhodopseudomonas palustris BisA531
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2551
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSME246196 ncbi Mycobacterium smegmatis MC2 1550
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HINF71421 ncbi Haemophilus influenzae Rd KW200
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DHAF138119 ncbi Desulfitobacterium hafniense Y510
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29010
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDIF272563 ncbi Clostridium difficile 6300
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER315749 ncbi Bacillus cytotoxicus NVH 391-980
BCER288681 ncbi Bacillus cereus E33L0
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02480
BANT568206 ncbi Bacillus anthracis CDC 6840
BANT261594 ncbi Bacillus anthracis Ames Ancestor0
BANT260799 ncbi Bacillus anthracis Sterne0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4490
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
AMET293826 ncbi Alkaliphilus metalliredigens QYMF0
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40180
AAVE397945 ncbi Acidovorax citrulli AAC00-10
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G7107   G7105   G6504   EG11826   
YPSE349747
YPSE273123
YPES386656
YPES377628
YPES360102
YPES349746
YPES214092
YPES187410
YENT393305
XCAM487884 XCC-B100_1712
WSUC273121
WPIP955
WPIP80849
VEIS391735
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852
TTHE262724
TROS309801
TPEN368408
TPAL243276
TKOD69014
TFUS269800
TDEN326298
TDEN243275
TCRU317025
TACI273075
SWOL335541
STRO369723
STOK273063
STHE292459
SSP321332
SSP321327
SSP1131
SSOL273057
SRUB309807 SRU_0592
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE171101
SMUT210007
SMAR399550
SERY405948
SEPI176280
SEPI176279
SELO269084
SCO
SAVE227882
SARE391037
SACI330779
RTYP257363
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RPAL316058 RPB_4708
RPAL316056
RPAL316055 RPE_1088
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RAKA293614
PTOR263820
PSP312153
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167539
PMAR146891
PISL384616
PHOR70601
PFUR186497
PAST100379
PARS340102
PAER208963
PAER178306
PACN267747
PABY272844
OTSU357244
NWIN323098 NWI_1414
NSP387092
NSEN222891
NPHA348780
NGON242231
NFAR247156
MTUB419947
MTUB336982
MTHE349307
MTHE264732
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSME246196
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAEO419665
MACE188937
MABS561007
LWEL386043
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LMON265669
LMON169963
LLAC272623
LLAC272622
LINT363253
LINT267671
LINT189518
LINN272626
LCAS321967
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
IHOS453591
HWAL362976
HSP64091
HSOM228400
HSOM205914
HSAL478009
HPYL85963
HPYL357544
HPY
HMUK485914
HMOD498761
HMAR272569
HINF71421
HINF374930
HINF281310
HHEP235279
HDUC233412
HBUT415426
HACI382638
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FRANT
FPHI484022
FNUC190304
ERUM302409
ERUM254945
EFAE226185
ECHA205920
ECAN269484
DSP255470
DSP216389
DNOD246195
DHAF138119
DETH243164
CVES412965
CTRA471473
CTRA471472
CTET212717
CTEP194439
CSUL444179
CRUT413404
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPEL335992
CMUR243161
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099 CJE_1618
CJEJ192222
CJEI306537
CHYD246194
CHOM360107
CFET360106
CFEL264202
CDIP257309
CDIF272563
CCUR360105
CCON360104
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT508765
CBLO291272
CBLO203907
CABO218497
BTUR314724
BTRI382640
BSP107806
BQUI283165
BHER314723
BHEN283166
BGAR290434
BCIC186490
BCER315749
BCER288681
BBUR224326
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BANT592021
BANT568206
BANT261594
BANT260799
BAFZ390236
AYEL322098
AURANTIMONAS
ASAL382245
APHA212042
APER272557
AORE350688
AMET293826
AMAR234826
ALAI441768 ACL_1019
AFUL224325
ACEL351607
ABUT367737
AAVE397945
AAEO224324


Organism features enriched in list (features available for 268 out of the 278 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 1.797e-924112
Arrangment:Singles 0.0023798147286
Disease:Bubonic_plague 0.009152366
Disease:Pharyngitis 0.001883188
Disease:Wide_range_of_infections 0.00017301111
Disease:bronchitis_and_pneumonitis 0.001883188
Endospores:No 0.0000127121211
GC_Content_Range4:0-40 4.963e-19149213
GC_Content_Range4:40-60 0.000057581224
GC_Content_Range4:60-100 1.241e-838145
GC_Content_Range7:0-30 6.768e-63647
GC_Content_Range7:30-40 7.666e-12113166
GC_Content_Range7:50-60 6.784e-825107
GC_Content_Range7:60-70 1.683e-834134
Genome_Size_Range5:0-2 1.821e-41140155
Genome_Size_Range5:4-6 1.274e-1541184
Genome_Size_Range5:6-10 4.621e-7647
Genome_Size_Range9:0-1 3.661e-102727
Genome_Size_Range9:1-2 1.894e-29113128
Genome_Size_Range9:3-4 0.00187572477
Genome_Size_Range9:4-5 2.391e-62496
Genome_Size_Range9:5-6 1.359e-81788
Genome_Size_Range9:6-8 1.715e-7338
Gram_Stain:Gram_Neg 0.0002299133333
Habitat:Host-associated 0.0000383117206
Habitat:Multiple 0.000058261178
Habitat:Terrestrial 0.0037024731
Motility:No 0.002771383151
Motility:Yes 1.424e-695267
Optimal_temp.:28-30 0.004155877
Oxygen_Req:Facultative 0.000673375201
Oxygen_Req:Microaerophilic 0.00444261418
Pathogenic_in:Animal 0.00215384166
Pathogenic_in:Human 0.0009019115213
Pathogenic_in:No 0.001067087226
Pathogenic_in:Rodent 0.004155877
Shape:Irregular_coccus 1.378e-61717
Shape:Rod 8.784e-14116347
Shape:Sphere 0.00051291619
Shape:Spiral 1.411e-83134
Temp._range:Hyperthermophilic 0.00023101923



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951140.5029
GLYCOCAT-PWY (glycogen degradation I)2461260.4683
PWY-1269 (CMP-KDO biosynthesis I)3251470.4625
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181150.4510
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481510.4509
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)156920.4374
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149880.4254
GALACTITOLCAT-PWY (galactitol degradation)73560.4233
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001350.4217
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176960.4114
PWY-5913 (TCA cycle variation IV)3011330.4051
PWY-5918 (heme biosynthesis I)2721250.4045
GALACTCAT-PWY (D-galactonate degradation)104680.4043



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7105   G6504   EG11826   
G71070.9996040.9999560.99962
G71050.9996050.999973
G65040.999643
EG11826



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PAIRWISE BLAST SCORES:

  G7107   G7105   G6504   EG11826   
G71070.0f0-0-
G7105-0.0f0-0
G65040-0.0f0-
EG11826-0-0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- CPLX0-7529 (capsular polysaccharide export apparatus) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.500, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9998 0.9996 G7105 (wzc) G7105-MONOMER (tyrosine kinase involved in colanic acid biosynthesis)
   *in cand* 0.9998 0.9996 G7107 (wza) G7107-MONOMER (lipoprotein required for capsular polysaccharide translocation through the outer membrane)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9998 0.9996 EG11826 (etk) EG11826-MONOMER (autophosphorylating protein tyrosine kinase)
   *in cand* 0.9998 0.9996 G6504 (gfcE) G6504-MONOMER (predicted exopolysaccharide export protein)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11826 G6504 (centered at G6504)
G7105 G7107 (centered at G7107)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7107   G7105   G6504   EG11826   
237/623265/623239/623267/623
AAUR290340:2:Tyes-0-0
ABAC204669:0:Tyes0124921
ABAU360910:0:Tyes011011
ABOR393595:0:Tyes0202
ACAU438753:0:Tyes0-0-
ACRY349163:8:Tyes1455014550
ADEH290397:0:Tyes1010
AEHR187272:0:Tyes0101
AFER243159:0:Tyes1010
AHYD196024:0:Tyes2020
ALAI441768:0:Tyes---0
AMAR329726:8:Tyes0---
AMAR329726:9:Tyes-015920
ANAE240017:0:Tyes-0-0
APLE416269:0:Tyes0-0-
APLE434271:0:Tno0-0-
ASP1667:3:Tyes-0-24
ASP232721:2:Tyes-0-0
ASP62928:0:Tyes1052020
ASP62977:0:Tyes2020
ASP76114:2:Tyes0150701507
AVAR240292:3:Tyes2249022490
BABO262698:1:Tno0-0-
BAMB339670:1:Tno-0--
BAMB339670:2:Tno0-01
BAMB398577:1:Tno---0
BAMB398577:2:Tno32032-
BAMY326423:0:Tyes-0-180
BBRO257310:0:Tyes0-0-
BCAN483179:1:Tno0-0-
BCEN331271:1:Tno1010
BCEN331272:2:Tyes0101
BCER226900:1:Tyes-0-0
BCER405917:1:Tyes-0-0
BCER572264:1:Tno-0-0
BCLA66692:0:Tyes-0-0
BFRA272559:1:Tyes783157301573
BFRA295405:0:Tno715157601576
BHAL272558:0:Tyes-0-0
BJAP224911:0:Fyes170170
BLIC279010:0:Tyes-0-0
BLON206672:0:Tyes-0-0
BMAL243160:0:Tno-0-0
BMAL243160:1:Tno0-0-
BMAL320388:0:Tno-0-0
BMAL320388:1:Tno0-0-
BMAL320389:0:Tyes-0-0
BMAL320389:1:Tyes0-0-
BMEL224914:1:Tno0-0-
BMEL359391:1:Tno0-0-
BOVI236:1:Tyes0-0-
BPAR257311:0:Tno0-0-
BPER257313:0:Tyes0-0-
BPET94624:0:Tyes0-0-
BPSE272560:0:Tyes0-0-
BPSE272560:1:Tyes-0-0
BPSE320372:0:Tno1-10
BPSE320372:1:Tno-0--
BPSE320373:0:Tno0-0-
BPSE320373:1:Tno-0-0
BPUM315750:0:Tyes-0-0
BSP36773:0:Tyes-0--
BSP36773:1:Tyes0-455454
BSP376:0:Tyes270272127
BSUB:0:Tyes-0-0
BSUI204722:1:Tyes0-0-
BSUI470137:1:Tno0-0-
BTHA271848:0:Tno0-01
BTHA271848:1:Tno-0--
BTHE226186:0:Tyes899012020
BTHU281309:1:Tno-0-0
BTHU412694:1:Tno-0-0
BVIE269482:5:Tyes-0-0
BVIE269482:6:Tyes0-0-
BWEI315730:4:Tyes-0-0
BXEN266265:1:Tyes0513511513
CACE272562:1:Tyes-0-0
CAULO:0:Tyes5050
CBEI290402:0:Tyes-0-0
CBOT36826:1:Tno-0-0
CBOT441770:0:Tyes-0-0
CBOT441771:0:Tno-0-0
CBOT441772:1:Tno-0-0
CBOT498213:1:Tno-0-0
CBOT515621:2:Tyes-0-0
CBOT536232:0:Tno-0-0
CCHL340177:0:Tyes0101
CDES477974:0:Tyes-0-0
CEFF196164:0:Fyes-0-0
CGLU196627:0:Tyes-0-0
CHUT269798:0:Tyes1970019700
CJAP155077:0:Tyes202739-
CJEJ195099:0:Tno--0-
CMIC31964:2:Tyes-0-0
CMIC443906:2:Tyes-105-0
CNOV386415:0:Tyes-0-0
CPER195102:1:Tyes-0-0
CPER195103:0:Tno-0-0
CPER289380:3:Tyes-0-0
CPHY357809:0:Tyes-0-0
CPRO264201:0:Fyes0-0-
CPSY167879:0:Tyes0202
CSAL290398:0:Tyes0101
CSP501479:1:Fyes-101
CSP501479:8:Fyes0---
CSP78:2:Tyes0276802768
CVIO243365:0:Tyes0-0-
DARO159087:0:Tyes0-0-
DDES207559:0:Tyes0202
DGEO319795:1:Tyes-0-0
DOLE96561:0:Tyes1010
DPSY177439:1:Fyes2020
DRAD243230:2:Tyes-0-0
DRED349161:0:Tyes-0-0
DSHI398580:5:Tyes0-0-
DVUL882:0:Tyes0202
ECAR218491:0:Tyes0202
ECOL199310:0:Tno3030
ECOL316407:0:Tno2020
ECOL331111:6:Tno2020
ECOL362663:0:Tno2020
ECOL364106:1:Tno2020
ECOL405955:2:Tyes2020
ECOL409438:6:Tyes2020
ECOL413997:0:Tno2020
ECOL439855:4:Tno0202
ECOL469008:0:Tno0202
ECOL481805:0:Tno0202
ECOL585034:0:Tno2020
ECOL585035:0:Tno2020
ECOL585055:0:Tno2020
ECOL585056:2:Tno2020
ECOL585057:0:Tno0202
ECOL585397:0:Tno2020
ECOL83334:0:Tno2020
ECOLI:0:Tno1117111520
ECOO157:0:Tno2020
EFER585054:1:Tyes2020
ELIT314225:0:Tyes0107801078
ESP42895:1:Tyes0384038
FALN326424:0:Tyes-0-0
FJOH376686:0:Tyes0707
FMAG334413:1:Tyes-0-0
FNOD381764:0:Tyes0-0-
FSP106370:0:Tyes-0-0
FSP1855:0:Tyes-0-0
FSUC59374:0:Tyes02060206
GFOR411154:0:Tyes1010
GKAU235909:1:Tyes-0-0
GMET269799:1:Tyes2020
GOXY290633:5:Tyes0-0-
GSUL243231:0:Tyes2020
GTHE420246:1:Tyes-0-0
GURA351605:0:Tyes0101
GVIO251221:0:Tyes052701
HARS204773:0:Tyes0202
HAUR316274:2:Tyes-3837-0
HCHE349521:0:Tyes2020
HHAL349124:0:Tyes0-0-
HNEP81032:0:Tyes1432014320
ILOI283942:0:Tyes0-0-
JSP290400:1:Tyes0-0-
JSP375286:0:Tyes0202
KPNE272620:2:Tyes1010
KRAD266940:2:Fyes-0-0
LACI272621:0:Tyes-0-0
LCHO395495:0:Tyes1148020
LDEL321956:0:Tyes-0-0
LDEL390333:0:Tyes-0-0
LGAS324831:0:Tyes-0-0
LHEL405566:0:Tyes-0-0
LJOH257314:0:Tyes-0-0
LMES203120:1:Tyes-0-0
LPLA220668:0:Tyes-779-0
LSAK314315:0:Tyes-0-0
LSPH444177:1:Tyes-0-0
LXYL281090:0:Tyes-0-0
MAER449447:0:Tyes85808580
MAQU351348:2:Tyes0-0-
MCAP243233:0:Tyes09610961
MEXT419610:0:Tyes0-0-
MFLA265072:0:Tyes2020
MGIL350054:3:Tyes-0-0
MLOT266835:2:Tyes2574-25740
MMAG342108:0:Tyes-0-0
MMAR394221:0:Tyes0-0-
MPET420662:1:Tyes1992019920
MSP164756:1:Tno-0-0
MSP164757:0:Tno-0-0
MSP189918:2:Tyes-0-0
MSP266779:3:Tyes2109021090
MSP400668:0:Tyes0-0-
MSP409:2:Tyes261-2610
MSUC221988:0:Tyes1010
MVAN350058:0:Tyes-0-0
MXAN246197:0:Tyes86708670
NARO279238:0:Tyes0251302513
NEUR228410:0:Tyes0101
NEUT335283:2:Tyes0101
NHAM323097:2:Tyes1-10
NMEN122586:0:Tno0-0-
NMEN122587:0:Tyes0-0-
NMEN272831:0:Tno0-0-
NMEN374833:0:Tno0-0-
NMUL323848:3:Tyes0202
NOCE323261:1:Tyes47404740
NSP103690:6:Tyes1548015480
NSP35761:1:Tyes-0-0
NWIN323098:0:Tyes--0-
OANT439375:5:Tyes0-0-
OCAR504832:0:Tyes2-20
OIHE221109:0:Tyes-0-0
PAER208964:0:Tno0-0-
PARC259536:0:Tyes0202
PATL342610:0:Tyes992956990
PCAR338963:0:Tyes0101
PCRY335284:1:Tyes0202
PDIS435591:0:Tyes1448011232191
PENT384676:0:Tyes0-0-
PFLU205922:0:Tyes010010
PFLU216595:1:Tyes015015
PFLU220664:0:Tyes1114-0-
PGIN242619:0:Tyes1010
PHAL326442:1:Tyes0140801408
PING357804:0:Tyes0-0-
PINT246198:1:Tyes0-486-
PLUM243265:0:Fyes2020
PLUT319225:0:Tyes59105910
PMAR167540:0:Tyes0-0-
PMAR167542:0:Tyes-0-0
PMEN399739:0:Tyes0-0-
PMOB403833:0:Tyes64906490
PMUL272843:1:Tyes0202
PNAP365044:8:Tyes6506563
PPEN278197:0:Tyes-0-0
PPRO298386:2:Tyes2020
PPUT160488:0:Tno0-0-
PPUT351746:0:Tyes0-0-
PPUT76869:0:Tno0-0-
PRUM264731:0:Tyes-0-0
PSP117:0:Tyes0607-607
PSP296591:2:Tyes0202
PSP56811:2:Tyes2020
PSTU379731:0:Tyes7340734726
PSYR205918:0:Tyes7070
PSYR223283:2:Tyes7070
PTHE370438:0:Tyes-0-0
RALB246199:0:Tyes-0-0
RCAS383372:0:Tyes-0-0
RDEN375451:2:Tyes0---
RDEN375451:4:Tyes-0-0
RETL347834:5:Tyes0-0-
REUT264198:2:Tyes2020
REUT381666:1:Tyes20214
RFER338969:1:Tyes020-
RLEG216596:6:Tyes202-
RMET266264:1:Tyes2020
RPAL258594:0:Tyes5050
RPAL316055:0:Tyes-0--
RPAL316057:0:Tyes0-0-
RPAL316058:0:Tyes--0-
RPOM246200:1:Tyes0-0-
RRUB269796:1:Tyes1621016210
RSOL267608:0:Tyes2020
RSP101510:3:Fyes-0-0
RSP357808:0:Tyes-0-0
RSPH272943:1:Tyes2020
RSPH349101:1:Tno-0-0
RSPH349101:2:Tno0-0-
RSPH349102:3:Tyes0202
RXYL266117:0:Tyes-0-0
SACI56780:0:Tyes019170-
SAGA205921:0:Tno-0-0
SAGA208435:0:Tno-0-0
SAGA211110:0:Tyes-0-0
SALA317655:1:Tyes35503550
SAUR158878:1:Tno-0-0
SAUR158879:1:Tno-0-0
SAUR196620:0:Tno-0-0
SAUR273036:0:Tno-0-0
SAUR282458:0:Tno-0-0
SAUR282459:0:Tno-0-0
SAUR359786:1:Tno-0-0
SAUR359787:1:Tno-0-0
SAUR367830:3:Tno-0-0
SAUR418127:0:Tyes-0-0
SAUR426430:0:Tno-0-0
SAUR93061:0:Fno-0-0
SAUR93062:1:Tno-0-0
SBAL399599:3:Tyes0-0-
SBAL402882:1:Tno0-0-
SBOY300268:1:Tyes0202
SDEG203122:0:Tyes0-0-
SDEN318161:0:Tyes0-0-
SDYS300267:1:Tyes2020
SENT209261:0:Tno0202
SENT220341:0:Tno2020
SENT295319:0:Tno0202
SENT321314:2:Tno2020
SENT454169:2:Tno2020
SFLE198214:0:Tyes2020
SFLE373384:0:Tno2020
SFUM335543:0:Tyes0276502765
SGLO343509:3:Tyes0202
SGOR29390:0:Tyes-0-0
SHAE279808:0:Tyes-0-0
SHAL458817:0:Tyes0-0-
SHIGELLA:0:Tno2020
SLAC55218:1:Fyes0-0-
SLOI323850:0:Tyes0-0-
SMED366394:3:Tyes0-0-
SMEL266834:1:Tyes---0
SMEL266834:2:Tyes0-0-
SONE211586:1:Tyes0-0-
SPEA398579:0:Tno0-0-
SPNE1313:0:Tyes-0-0
SPNE170187:0:Tyes-0-0
SPNE487213:0:Tno-0-0
SPNE487214:0:Tno-0-0
SPNE488221:0:Tno-0-0
SPRO399741:1:Tyes1320131901319
SRUB309807:1:Tyes--0-
SSAP342451:2:Tyes-0-0
SSED425104:0:Tyes0-0-
SSON300269:1:Tyes2020
SSP1148:0:Tyes0-0-
SSP292414:2:Tyes0-0-
SSP387093:0:Tyes17901790
SSP644076:7:Fyes0-0-
SSP64471:0:Tyes-0-0
SSP84588:0:Tyes0-16-
SSP94122:1:Tyes0-0-
SSUI391295:0:Tyes-0-0
SSUI391296:0:Tyes-0-0
STHE264199:0:Tyes-0-0
STHE299768:0:Tno-0-0
STHE322159:2:Tyes-0-0
STYP99287:1:Tyes2020
TDEN292415:0:Tyes2020
TELO197221:0:Tyes--10
TERY203124:0:Tyes0101
TLET416591:0:Tyes880880
TMAR243274:0:Tyes0-0-
TPET390874:0:Tno5050
TPSE340099:0:Tyes-0-0
TSP1755:0:Tyes-0-0
TSP28240:0:Tyes4-40
TTEN273068:0:Tyes-0-0
TTUR377629:0:Tyes0-0-
VCHO:0:Tyes0101
VCHO345073:1:Tno0101
VFIS312309:2:Tyes0303
VPAR223926:0:Tyes0202
VVUL196600:2:Tyes0303
VVUL216895:1:Tno5050
XAUT78245:1:Tyes2700270-
XAXO190486:0:Tyes0-0-
XCAM190485:0:Tyes0-0-
XCAM314565:0:Tno0-0-
XCAM316273:0:Tno0-0-
XCAM487884:0:Tno0---
XFAS160492:2:Tno0-0-
XFAS183190:1:Tyes0-0-
XFAS405440:0:Tno0-0-
XORY291331:0:Tno0-0-
XORY342109:0:Tyes0-0-
XORY360094:0:Tno0-0-
ZMOB264203:0:Tyes0-0-



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