CANDIDATE ID: 299

CANDIDATE ID: 299

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9958717e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    2.5000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7856 (ulaA) (b4193)
   Products of gene:
     - SGAT-MONOMER (UlaA)
     - EIISGA (L-ascorbate transporting phosphotransferase system)
       Reactions:
        phosphoenolpyruvate + L-ascorbate-6-phosphate[periplasmic space]  ->  L-ascorbate-6-phosphate[cytosol] + pyruvate

- EG12554 (sgcA) (b4302)
   Products of gene:
     - SGCA-MONOMER (SgcA)
     - EIISGC (EIISgc)

- EG12495 (ulaC) (b4195)
   Products of gene:
     - YJFU-MONOMER (UlaC)
     - EIISGA (L-ascorbate transporting phosphotransferase system)
       Reactions:
        phosphoenolpyruvate + L-ascorbate-6-phosphate[periplasmic space]  ->  L-ascorbate-6-phosphate[cytosol] + pyruvate

- EG11791 (cmtB) (b2934)
   Products of gene:
     - CMTB-MONOMER (CmtB)
     - CPLX-156 (CmtAB mannitol PTS permease)
       Reactions:
        phosphoenolpyruvate + D-mannitol[periplasmic space]  ->  mannitol-1-phosphate[cytosol] + pyruvate



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 152
Effective number of orgs (counting one per cluster within 468 clusters): 81

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB44
TSP1755 Thermoanaerobacter sp.4
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332234
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
STHE292459 ncbi Symbiobacterium thermophilum IAM 148634
SSUI391296 ncbi Streptococcus suis 98HAH334
SSUI391295 ncbi Streptococcus suis 05ZYH334
SSON300269 ncbi Shigella sonnei Ss0463
SPYO370554 ncbi Streptococcus pyogenes MGAS107504
SPYO370553 ncbi Streptococcus pyogenes MGAS20964
SPYO370552 ncbi Streptococcus pyogenes MGAS102704
SPYO370551 ncbi Streptococcus pyogenes MGAS94294
SPYO319701 ncbi Streptococcus pyogenes MGAS61804
SPYO293653 ncbi Streptococcus pyogenes MGAS50054
SPYO286636 ncbi Streptococcus pyogenes MGAS103944
SPYO198466 ncbi Streptococcus pyogenes MGAS3154
SPYO193567 ncbi Streptococcus pyogenes SSI-14
SPYO186103 ncbi Streptococcus pyogenes MGAS82324
SPYO160490 ncbi Streptococcus pyogenes M1 GAS4
SPRO399741 ncbi Serratia proteamaculans 5684
SPNE488221 ncbi Streptococcus pneumoniae 705854
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-64
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-144
SPNE171101 ncbi Streptococcus pneumoniae R64
SPNE170187 ncbi Streptococcus pneumoniae G544
SPNE1313 Streptococcus pneumoniae4
SMUT210007 ncbi Streptococcus mutans UA1594
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SGOR29390 Streptococcus gordonii Challis4
SGLO343509 ncbi Sodalis glossinidius morsitans3
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SBOY300268 ncbi Shigella boydii Sb2274
SAUR93062 ncbi Staphylococcus aureus aureus COL4
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83254
SAUR426430 ncbi Staphylococcus aureus aureus Newman4
SAUR418127 ncbi Staphylococcus aureus aureus Mu34
SAUR367830 Staphylococcus aureus aureus USA3004
SAUR359787 ncbi Staphylococcus aureus aureus JH14
SAUR359786 ncbi Staphylococcus aureus aureus JH94
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4764
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2524
SAUR273036 ncbi Staphylococcus aureus RF1224
SAUR196620 ncbi Staphylococcus aureus aureus MW24
SAUR158879 ncbi Staphylococcus aureus aureus N3154
SAUR158878 ncbi Staphylococcus aureus aureus Mu504
SAGA211110 ncbi Streptococcus agalactiae NEM3164
SAGA208435 ncbi Streptococcus agalactiae 2603V/R4
SAGA205921 ncbi Streptococcus agalactiae A9094
PPRO298386 ncbi Photobacterium profundum SS94
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 374
PACN267747 ncbi Propionibacterium acnes KPA1712024
OIHE221109 ncbi Oceanobacillus iheyensis HTE8314
MSYN262723 ncbi Mycoplasma synoviae 534
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP4
MPNE272634 ncbi Mycoplasma pneumoniae M1294
MPEN272633 ncbi Mycoplasma penetrans HF-24
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG14
MHYO295358 ncbi Mycoplasma hyopneumoniae 2324
MHYO262722 ncbi Mycoplasma hyopneumoniae 74484
MHYO262719 ncbi Mycoplasma hyopneumoniae J4
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273434
LXYL281090 ncbi Leifsonia xyli xyli CTCB073
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53344
LSPH444177 ncbi Lysinibacillus sphaericus C3-414
LPLA220668 ncbi Lactobacillus plantarum WCFS14
LMON265669 ncbi Listeria monocytogenes 4b F23654
LMON169963 ncbi Listeria monocytogenes EGD-e4
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82934
LLAC272622 ncbi Lactococcus lactis cremoris SK114
LINN272626 ncbi Listeria innocua Clip112624
LCAS321967 ncbi Lactobacillus casei ATCC 3344
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
HDUC233412 ncbi Haemophilus ducreyi 35000HP4
GKAU235909 ncbi Geobacillus kaustophilus HTA4264
FMAG334413 ncbi Finegoldia magna ATCC 293284
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
EFAE226185 ncbi Enterococcus faecalis V5834
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
CTET212717 ncbi Clostridium tetani E883
CPER289380 ncbi Clostridium perfringens SM1014
CPER195103 ncbi Clostridium perfringens ATCC 131244
CPER195102 ncbi Clostridium perfringens 134
CNOV386415 ncbi Clostridium novyi NT3
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3823
CMIC31964 ncbi Clavibacter michiganensis sepedonicus3
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130324
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131294
CDIF272563 ncbi Clostridium difficile 6304
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto4
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6574
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B4
CBOT498213 ncbi Clostridium botulinum B1 str. Okra4
CBOT441772 ncbi Clostridium botulinum F str. Langeland4
CBOT441771 ncbi Clostridium botulinum A str. Hall4
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193974
CBOT36826 Clostridium botulinum A4
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80524
BPUM315750 ncbi Bacillus pumilus SAFR-0324
BLIC279010 ncbi Bacillus licheniformis ATCC 145804
BHAL272558 ncbi Bacillus halodurans C-1254
BCLA66692 ncbi Bacillus clausii KSM-K164
BCER315749 ncbi Bacillus cytotoxicus NVH 391-984
BCER288681 ncbi Bacillus cereus E33L4
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AHYD196024 Aeromonas hydrophila dhakensis4


Names of the homologs of the genes in the group in each of these orgs
  G7856   EG12554   EG12495   EG11791   
YPSE349747 YPSIP31758_1437YPSIP31758_1440YPSIP31758_1440YPSIP31758_1440
YPSE273123 YPTB2602YPTB2600YPTB2600YPTB2600
YPES386656 YPDSF_1978YPDSF_1976YPDSF_1976YPDSF_1976
YPES377628 YPN_2165YPN_2161YPN_2161YPN_2161
YPES360102 YPA_2060YPA_2058YPA_2058YPA_2058
YPES349746 YPANGOLA_A0344YPANGOLA_A0342YPANGOLA_A0342YPANGOLA_A0342
YPES214092 YPO2782YPO2569YPO2569YPO2569
YPES187410 Y1615Y1618Y1618Y1618
YENT393305 YE1328YE1330YE1330YE1330
VVUL216895 VV2_1080VV2_0860VV2_1081VV2_0860
VVUL196600 VVA1604VVA1331VVA1605VVA1331
VPAR223926 VPA0229VPA0231VPA0231VPA0500
VFIS312309 VFA0129VFA0060VFA0060VFA0060
VCHO345073 VC0395_0983VC0395_0984VC0395_0984VC0395_0984
VCHO VCA0246VCA0245VCA0245VCA0245
TTEN273068 TTE0304TTE0303TTE0303TTE0303
TSP1755 TETH514_0238TETH514_0237TETH514_0237TETH514_0237
TPSE340099 TETH39_1982TETH39_1983TETH39_1983TETH39_1983
STYP99287 STM4383STM1616STM4385STM2344
STHE292459 STH2308STH2312STH2312STH2312
SSUI391296 SSU98_2066SSU98_0188SSU98_2064SSU98_2064
SSUI391295 SSU05_2063SSU05_0187SSU05_2061SSU05_2061
SSON300269 SSO_3088SSO_4377SSO_3088
SPYO370554 MGAS10750_SPY0154MGAS10750_SPY1758MGAS10750_SPY0156MGAS10750_SPY1758
SPYO370553 MGAS2096_SPY0156MGAS2096_SPY1687MGAS2096_SPY0158MGAS2096_SPY1687
SPYO370552 MGAS10270_SPY0150MGAS10270_SPY1732MGAS10270_SPY0152MGAS10270_SPY1732
SPYO370551 MGAS9429_SPY0150MGAS9429_SPY1665MGAS9429_SPY0152MGAS9429_SPY1665
SPYO319701 M28_SPY0146M28_SPY1652M28_SPY0148M28_SPY1652
SPYO293653 M5005_SPY0148M5005_SPY1664M5005_SPY0150M5005_SPY1664
SPYO286636 M6_SPY0194M6_SPY1672M6_SPY0196M6_SPY1672
SPYO198466 SPYM3_0135SPYM3_1680SPYM3_0137SPYM3_1680
SPYO193567 SPS0138SPS1682SPS0140SPS1682
SPYO186103 SPYM18_0173SPYM18_2018SPYM18_0175SPYM18_2018
SPYO160490 SPY0174SPY1952SPY0176SPY1952
SPRO399741 SPRO_2256SPRO_2253SPRO_2253SPRO_2253
SPNE488221 SP70585_2124SP70585_2122SP70585_2122SP70585_2122
SPNE487214 SPH_2191SPH_2189SPH_2189SPH_2189
SPNE487213 SPT_2033SPT_2031SPT_2031SPT_2031
SPNE171101 SPR1849SPR1847SPR1847SPR1847
SPNE170187 SPN20046SPN20049SPN20049SPN20049
SPNE1313 SPJ_2044SPJ_2042SPJ_2042SPJ_2042
SMUT210007 SMU_270SMU_272SMU_272SMU_272
SHIGELLA SGATPTXAPTXAPTXA
SGOR29390 SGO_0423SGO_0421SGO_0421SGO_0421
SGLO343509 SG2041SG2041SG2041
SFLE373384 SFV_4349SFV_4351SFV_4351SFV_4351
SFLE198214 AAN45765.1AAN45767.1AAN45767.1AAN45767.1
SENT454169 SEHA_C4801SEHA_C1794SEHA_C4803SEHA_C2585
SENT321314 SCH_4257SCH_1612SCH_4259SCH_2345
SENT295319 SPA4200SPA1253SPA4202SPA0520
SENT220341 STY4739STY1448STY4741STY2574
SENT209261 T4434T1525T4436T0520
SDYS300267 SDY_4362SDY_4364SDY_4364SDY_3143
SBOY300268 SBO_4262SBO_3055SBO_4260SBO_3055
SAUR93062 SACOL0400SACOL0402SACOL0402SACOL0402
SAUR93061 SAOUHSC_00310SAOUHSC_00312SAOUHSC_00312SAOUHSC_00312
SAUR426430 NWMN_0322NWMN_0324NWMN_0324NWMN_0324
SAUR418127 SAHV_0326SAHV_0328SAHV_0328SAHV_0328
SAUR367830 SAUSA300_0330SAUSA300_0332SAUSA300_0332SAUSA300_0332
SAUR359787 SAURJH1_0388SAURJH1_0390SAURJH1_0390SAURJH1_0390
SAUR359786 SAURJH9_0378SAURJH9_0380SAURJH9_0380SAURJH9_0380
SAUR282459 SAS0306SAS0308SAS0308SAS0308
SAUR282458 SAR0326SAR0328SAR0328SAR0328
SAUR273036 SAB0278CSAB0280CSAB0280CSAB0280C
SAUR196620 MW0306MW0308MW0308MW0308
SAUR158879 SA0318SA0320SA0320SA0320
SAUR158878 SAV0329SAV0331SAV0331SAV0331
SAGA211110 GBS1856GBS1854GBS1854GBS1854
SAGA208435 SAG_1815SAG_1813SAG_1813SAG_1813
SAGA205921 SAK_1835SAK_1833SAK_1833SAK_1833
PPRO298386 PBPRB0273PBPRB0274PBPRB0274PBPRB0274
PMUL272843 PM0764PM0765PM0765PM0765
PLUM243265 PLU1981PLU1979PLU1979PLU1979
PING357804 PING_2055PING_2057PING_2057PING_2057
PACN267747 PPA0446PPA0447PPA0447PPA0447
OIHE221109 OB3414OB3416OB3416OB3416
MSYN262723 MS53_0026MS53_0028MS53_0028MS53_0028
MSUC221988 MS0022MS0021MS0021MS0149
MPUL272635 MYPU_5940MYPU_5960MYPU_5960MYPU_5960
MPNE272634 MPN496MPN494MPN494MPN494
MPEN272633 MYPE7220MYPE4480MYPE7190MYPE7190
MMYC272632 MSC_0395MSC_0394MSC_0394MSC_0394
MHYO295358 MHP388MHP386MHP386MHP386
MHYO262722 MHP7448_0376MHP7448_0374MHP7448_0374MHP7448_0374
MHYO262719 MHJ_0372MHJ_0370MHJ_0370MHJ_0370
MCAP340047 MCAP_0590MCAP_0591MCAP_0591MCAP_0591
LXYL281090 LXX04670LXX04670LXX04670
LWEL386043 LWE2598LWE2600LWE2600LWE2601
LSPH444177 BSPH_1870BSPH_1872BSPH_1872BSPH_1872
LPLA220668 LP_3136LP_3542LP_3542LP_3138
LMON265669 LMOF2365_2621LMOF2365_2785LMOF2365_2623LMOF2365_2785
LMON169963 LMO2649LMO2797LMO1973LMO2797
LMES203120 LEUM_1996LEUM_1997LEUM_1997LEUM_1997
LLAC272622 LACR_1735LACR_1737LACR_1737LACR_1737
LINN272626 LIN2798LIN2929LIN2800LIN2929
LCAS321967 LSEI_2737LSEI_0324LSEI_0324LSEI_0324
KPNE272620 GKPORF_B3946GKPORF_A0094GKPORF_B3948GKPORF_A0094
HDUC233412 HD_1860HD_1859HD_1859HD_1859
GKAU235909 GK2016GK2018GK2018GK2018
FMAG334413 FMG_1538FMG_1540FMG_1540FMG_1540
ESP42895 ENT638_2844ENT638_2846ENT638_2846ENT638_2846
EFER585054 EFER_4246EFER_2865EFER_4248EFER_2865
EFAE226185 EF_1127EF_2966EF_2966EF_2966
ECOO157 SGATPTXAPTXACMTB
ECOL83334 ECS5169ECS5171ECS5171ECS3809
ECOL585397 ECED1_4980ECED1_4982ECED1_4982ECED1_3395
ECOL585057 ECIAI39_4658ECIAI39_3352ECIAI39_4660ECIAI39_3352
ECOL585056 ECUMN_4726ECUMN_4901ECUMN_4728ECUMN_3283
ECOL585055 EC55989_4750EC55989_4926EC55989_4752EC55989_3226
ECOL585035 ECS88_4779ECS88_4913ECS88_4781ECS88_3215
ECOL585034 ECIAI1_4426ECIAI1_3059ECIAI1_4428ECIAI1_3059
ECOL481805 ECOLC_3820ECOLC_3818ECOLC_3818ECOLC_0777
ECOL469008 ECBD_3841ECBD_3737ECBD_3839ECBD_0805
ECOL439855 ECSMS35_4664ECSMS35_4666ECSMS35_4666ECSMS35_3075
ECOL413997 ECB_04060ECB_04167ECB_04062ECB_02764
ECOL409438 ECSE_4491ECSE_3202ECSE_4493ECSE_3202
ECOL405955 APECO1_2199APECO1_3596APECO1_3596APECO1_3596
ECOL364106 UTI89_C4793UTI89_C3321UTI89_C4795UTI89_C3321
ECOL362663 ECP_4438ECP_2927ECP_4440ECP_2927
ECOL331111 ECE24377A_4753ECE24377A_3268ECE24377A_4755ECE24377A_3268
ECOL316407 ECK4189:JW5744:B4193ECK4291:JW4264:B4302ECK4191:JW4153:B4195ECK2929:JW2901:B2934
ECOL199310 C5281C0336C5284C3516
ECAR218491 ECA2354ECA3773ECA2356ECA3773
CTET212717 CTC_00277CTC_00277CTC_00277
CPER289380 CPR_0491CPR_0489CPR_0489CPR_0489
CPER195103 CPF_0645CPF_0501CPF_0501CPF_0501
CPER195102 CPE0523CPE0521CPE0521CPE0521
CNOV386415 NT01CX_1443NT01CX_1443NT01CX_1443
CMIC443906 CMM_0984CMM_0984CMM_0984
CMIC31964 CMS0602CMS0602CMS0602
CGLU196627 CG3365CG3366CG3366CG3366
CDIP257309 DIP2333DIP2332DIP2332DIP2332
CDIF272563 CD3629CD3631CD3631CD3631
CBOT536232 CLM_2362CLM_2364CLM_2364CLM_2364
CBOT515621 CLJ_B2358CLJ_B2360CLJ_B2360CLJ_B2360
CBOT508765 CLL_A3265CLL_A3266CLL_A3532CLL_A3532
CBOT498213 CLD_2485CLD_2483CLD_2483CLD_2486
CBOT441772 CLI_2197CLI_2199CLI_2199CLI_2199
CBOT441771 CLC_2094CLC_2096CLC_2096CLC_2096
CBOT441770 CLB_2089CLB_2091CLB_2091CLB_2091
CBOT36826 CBO2150CBO2152CBO2152CBO2152
CBEI290402 CBEI_2739CBEI_2741CBEI_2738CBEI_0525
BPUM315750 BPUM_1756BPUM_1758BPUM_1758BPUM_1758
BLIC279010 BL01776BL01774BL01774BL01774
BHAL272558 BH0223BH0220BH0220BH0193
BCLA66692 ABC0947ABC3501ABC0884ABC0945
BCER315749 BCER98_2009BCER98_2011BCER98_2011BCER98_2011
BCER288681 BCE33L2662BCE33L2664BCE33L2664BCE33L2664
ASAL382245 ASA_4218ASA_4216ASA_4216ASA_4216
APLE434271 APJL_1732APJL_1731APJL_1731APJL_1731
APLE416269 APL_1700APL_1699APL_1699APL_1699
AHYD196024 AHA_0171AHA_0173AHA_0173AHA_0173


Organism features enriched in list (features available for 144 out of the 152 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 1.348e-115092
Arrangment:Clusters 0.00005971217
Arrangment:Pairs 8.653e-1460112
Disease:Botulism 0.000871955
Disease:Bubonic_plague 0.000209766
Disease:Dysentery 0.000209766
Disease:Gastroenteritis 0.00008521013
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.0000907911
Disease:Urinary_tract_infection 0.003605944
Disease:Wide_range_of_infections 1.552e-71111
Disease:endocarditis 0.003605944
Disease:pneumonia 0.0019995812
Endospores:No 0.000153770211
Endospores:Yes 0.00087682353
GC_Content_Range4:0-40 0.000110071213
GC_Content_Range4:40-60 0.002154669224
GC_Content_Range4:60-100 8.470e-164145
GC_Content_Range7:0-30 0.00033222247
GC_Content_Range7:50-60 0.000966739107
GC_Content_Range7:60-70 1.310e-162134
Genome_Size_Range5:0-2 0.000566124155
Genome_Size_Range5:4-6 0.000031065184
Genome_Size_Range5:6-10 0.0000146147
Genome_Size_Range9:1-2 0.000466718128
Genome_Size_Range9:4-5 0.00001034196
Genome_Size_Range9:6-8 0.0001868138
Gram_Stain:Gram_Neg 0.002908069333
Gram_Stain:Gram_Pos 1.308e-1372150
Habitat:Aquatic 0.0000240891
Habitat:Host-associated 0.001535365206
Habitat:Multiple 0.001273058178
Habitat:Specialized 0.0006795453
Motility:No 0.000065755151
Optimal_temp.:- 0.000026143257
Optimal_temp.:30-35 0.001116767
Optimal_temp.:30-37 2.072e-61418
Optimal_temp.:37 1.198e-850106
Oxygen_Req:Aerobic 8.451e-1610185
Oxygen_Req:Facultative 3.050e-32109201
Pathogenic_in:Human 1.207e-1796213
Pathogenic_in:No 2.361e-1222226
Pathogenic_in:Swine 0.000871955
Salinity:Non-halophilic 1.424e-748106
Shape:Coccus 2.149e-63882
Temp._range:Mesophilic 9.862e-7135473
Temp._range:Thermophilic 0.0098118335



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 467
Effective number of orgs (counting one per cluster within 468 clusters): 385

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VEIS391735 ncbi Verminephrobacter eiseniae EF01-20
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79010
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TSP28240 Thermotoga sp.0
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSP94122 ncbi Shewanella sp. ANA-30
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP644076 Silicibacter sp. TrichCH4B0
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP292414 ncbi Ruegeria sp. TM10400
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSED425104 ncbi Shewanella sediminis HAW-EB30
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPEA398579 ncbi Shewanella pealeana ATCC 7003450
SONE211586 ncbi Shewanella oneidensis MR-10
SMEL266834 ncbi Sinorhizobium meliloti 10210
SMED366394 ncbi Sinorhizobium medicae WSM4190
SMAR399550 ncbi Staphylothermus marinus F10
SLOI323850 ncbi Shewanella loihica PV-40
SLAC55218 Ruegeria lacuscaerulensis0
SHAL458817 ncbi Shewanella halifaxensis HAW-EB40
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23380
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2170
SDEG203122 ncbi Saccharophagus degradans 2-400
SCO ncbi Streptomyces coelicolor A3(2)1
SBAL402882 ncbi Shewanella baltica OS1850
SBAL399599 ncbi Shewanella baltica OS1950
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170250
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170290
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.10
RSP357808 ncbi Roseiflexus sp. RS-10
RSP101510 ncbi Rhodococcus jostii RHA10
RSOL267608 ncbi Ralstonia solanacearum GMI10000
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111700
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-30
RPAL316058 ncbi Rhodopseudomonas palustris HaA20
RPAL316057 ncbi Rhodopseudomonas palustris BisB50
RPAL316056 ncbi Rhodopseudomonas palustris BisB180
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RPAL258594 ncbi Rhodopseudomonas palustris CGA0090
RMET266264 ncbi Ralstonia metallidurans CH340
RMAS416276 ncbi Rickettsia massiliae MTU50
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38410
RFER338969 ncbi Rhodoferax ferrireducens T1180
RFEL315456 ncbi Rickettsia felis URRWXCal20
REUT381666 ncbi Ralstonia eutropha H160
REUT264198 ncbi Ralstonia eutropha JMP1340
RETL347834 ncbi Rhizobium etli CFN 420
RDEN375451 ncbi Roseobacter denitrificans OCh 1140
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30000
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a0
PSTU379731 ncbi Pseudomonas stutzeri A15010
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP296591 ncbi Polaromonas sp. JS6660
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PPUT76869 ncbi Pseudomonas putida GB-10
PPUT351746 ncbi Pseudomonas putida F10
PPUT160488 ncbi Pseudomonas putida KT24400
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PNAP365044 ncbi Polaromonas naphthalenivorans CJ20
PMOB403833 ncbi Petrotoga mobilis SJ950
PMEN399739 ncbi Pseudomonas mendocina ymp0
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PFLU220664 ncbi Pseudomonas fluorescens Pf-50
PFLU216595 ncbi Pseudomonas fluorescens SBW250
PFLU205922 ncbi Pseudomonas fluorescens Pf0-10
PENT384676 ncbi Pseudomonas entomophila L480
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER208964 ncbi Pseudomonas aeruginosa PAO10
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OCAR504832 ncbi Oligotropha carboxidovorans OM50
OANT439375 ncbi Ochrobactrum anthropi ATCC 491881
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP35761 Nocardioides sp.0
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16220
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP409 Methylobacterium sp.0
MSP400668 ncbi Marinomonas sp. MWYL11
MSP266779 ncbi Chelativorans sp. BNC10
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1550
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPET420662 ncbi Methylibium petroleiphilum PM10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLOT266835 ncbi Mesorhizobium loti MAFF3030990
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L11
MFLA265072 ncbi Methylobacillus flagellatus KT0
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCHO395495 ncbi Leptothrix cholodnii SP-60
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM1
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
JSP375286 ncbi Janthinobacterium sp. Marseille0
JSP290400 ncbi Jannaschia sp. CCS10
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HINF71421 ncbi Haemophilus influenzae Rd KW200
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HCHE349521 ncbi Hahella chejuensis KCTC 23960
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GURA351605 ncbi Geobacter uraniireducens Rf40
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-21
GSUL243231 ncbi Geobacter sulfurreducens PCA0
GOXY290633 ncbi Gluconobacter oxydans 621H0
GMET269799 ncbi Geobacter metallireducens GS-150
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DRED349161 ncbi Desulfotomaculum reducens MI-10
DRAD243230 ncbi Deinococcus radiodurans R10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A1
DHAF138119 ncbi Desulfitobacterium hafniense Y510
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
DARO159087 ncbi Dechloromonas aromatica RCB0
CVIO243365 ncbi Chromobacterium violaceum ATCC 124720
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.1
CSP501479 Citreicella sp. SE450
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29010
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB151
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BWEI315730 ncbi Bacillus weihenstephanensis KBAB40
BVIE269482 ncbi Burkholderia vietnamiensis G40
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHU412694 ncbi Bacillus thuringiensis Al Hakam0
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-270
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BTHA271848 ncbi Burkholderia thailandensis E2640
BSUI470137 ncbi Brucella suis ATCC 234450
BSUI204722 ncbi Brucella suis 13300
BSUB ncbi Bacillus subtilis subtilis 1680
BSP376 Bradyrhizobium sp.0
BSP36773 Burkholderia sp.0
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPSE320373 ncbi Burkholderia pseudomallei 6680
BPSE320372 ncbi Burkholderia pseudomallei 1710b0
BPSE272560 ncbi Burkholderia pseudomallei K962430
BPET94624 Bordetella petrii0
BPER257313 ncbi Bordetella pertussis Tohama I0
BPAR257311 ncbi Bordetella parapertussis 128220
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23080
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M0
BMAL320389 ncbi Burkholderia mallei NCTC 102470
BMAL320388 ncbi Burkholderia mallei SAVP10
BMAL243160 ncbi Burkholderia mallei ATCC 233440
BLON206672 ncbi Bifidobacterium longum NCC27050
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1100
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1020
BCER405917 Bacillus cereus W1
BCER226900 ncbi Bacillus cereus ATCC 145790
BCEN331272 ncbi Burkholderia cenocepacia HI24240
BCEN331271 ncbi Burkholderia cenocepacia AU 10540
BCAN483179 ncbi Brucella canis ATCC 233650
BBUR224326 ncbi Borrelia burgdorferi B310
BBRO257310 ncbi Bordetella bronchiseptica RB500
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02480
BANT568206 ncbi Bacillus anthracis CDC 6840
BANT261594 ncbi Bacillus anthracis Ames Ancestor0
BANT260799 ncbi Bacillus anthracis Sterne0
BAMY326423 ncbi Bacillus amyloliquefaciens FZB420
BAMB398577 ncbi Burkholderia ambifaria MC40-60
BAMB339670 ncbi Burkholderia ambifaria AMMD0
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9410
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP62928 ncbi Azoarcus sp. BH720
ASP232721 ncbi Acidovorax sp. JS420
ASP1667 Arthrobacter sp.0
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG10
AMET293826 ncbi Alkaliphilus metalliredigens QYMF0
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACRY349163 ncbi Acidiphilium cryptum JF-50
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ACAU438753 ncbi Azorhizobium caulinodans ORS 5710
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAU360910 ncbi Bordetella avium 197N0
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3450
AAVE397945 ncbi Acidovorax citrulli AAC00-10
AAUR290340 ncbi Arthrobacter aurescens TC10
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G7856   EG12554   EG12495   EG11791   
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
XAUT78245
WSUC273121
WPIP955
WPIP80849
VEIS391735
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTUR377629
TTHE300852
TTHE262724
TSP28240
TROS309801
TPET390874
TPEN368408
TPAL243276
TMAR243274
TLET416591
TKOD69014
TFUS269800
TERY203124
TELO197221
TDEN326298
TDEN292415
TDEN243275
TCRU317025
TACI273075
SWOL335541
STRO369723
STOK273063
STHE322159
STHE299768
STHE264199
SSP94122
SSP84588
SSP64471
SSP644076
SSP387093
SSP321332
SSP321327
SSP292414
SSP1148
SSP1131
SSOL273057
SSED425104
SRUB309807
SPEA398579
SONE211586
SMEL266834
SMED366394
SMAR399550
SLOI323850
SLAC55218
SHAL458817
SHAE279808 SH0233
SFUM335543
SERY405948
SEPI176280
SEPI176279
SELO269084
SDEN318161
SDEG203122
SCO SCO0136
SBAL402882
SBAL399599
SAVE227882
SARE391037
SALA317655
SACI56780
SACI330779
RXYL266117
RTYP257363
RSPH349102
RSPH349101
RSPH272943
RSP357808
RSP101510
RSOL267608
RSAL288705
RRUB269796
RRIC452659
RRIC392021
RPRO272947
RPOM246200
RPAL316058
RPAL316057
RPAL316056
RPAL316055
RPAL258594
RMET266264
RMAS416276
RLEG216596
RFER338969
RFEL315456
REUT381666
REUT264198
RETL347834
RDEN375451
RCON272944
RCAS383372
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PTHE370438
PSYR223283
PSYR205918
PSTU379731
PSP56811
PSP312153
PSP296591
PSP117
PRUM264731
PPUT76869
PPUT351746
PPUT160488
PPEN278197
PNAP365044
PMOB403833
PMEN399739
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PHOR70601
PHAL326442
PGIN242619
PFUR186497
PFLU220664
PFLU216595
PFLU205922
PENT384676
PDIS435591
PCRY335284
PCAR338963
PATL342610
PAST100379
PARS340102
PARC259536
PAER208964
PAER208963
PAER178306
PABY272844
OTSU357244
OCAR504832
OANT439375 OANT_4120
NWIN323098
NSP387092
NSP35761
NSP103690
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NFAR247156
NEUT335283
NEUR228410
NARO279238
MXAN246197
MVAN350058 MVAN_5589
MTUB419947
MTUB336982
MTHE349307
MTHE264732
MTHE187420
MTBRV
MTBCDC
MSTA339860
MSP409
MSP400668 MMWYL1_2419
MSP266779
MSP189918
MSP164757
MSP164756
MSME246196
MSED399549
MPET420662
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407
MMAR267377
MMAG342108
MLOT266835
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHUN323259
MGIL350054 MFLV_1219
MGEN243273
MFLO265311 MFL643
MFLA265072
MEXT419610
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAQU351348
MAER449447
MAEO419665
MACE188937
MABS561007
LSAK314315
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LLAC272623
LJOH257314
LINT363253
LINT267671
LINT189518
LHEL405566 LHV_1844
LGAS324831
LDEL390333
LDEL321956
LCHO395495
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621 LBA1777
KRAD266940
JSP375286
JSP290400
ILOI283942
IHOS453591
HWAL362976
HSP64091
HSOM228400
HSOM205914
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032
HMUK485914
HMOD498761
HMAR272569
HINF71421
HINF374930
HINF281310
HHEP235279
HHAL349124
HCHE349521
HBUT415426
HARS204773
HACI382638
GVIO251221
GURA351605
GTHE420246 GTNG_1845
GSUL243231
GOXY290633
GMET269799
GFOR411154
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855
FSP106370
FRANT
FPHI484022
FNUC190304
FNOD381764
FJOH376686
FALN326424
ERUM302409
ERUM254945
ELIT314225
ECHA205920
ECAN269484
DVUL882
DSP255470
DSP216389
DSHI398580
DRED349161
DRAD243230
DPSY177439
DOLE96561
DNOD246195 DNO_0610
DHAF138119
DGEO319795
DETH243164
DDES207559
DARO159087
CVIO243365
CVES412965
CTRA471473
CTRA471472
CTEP194439
CSUL444179
CSP78 CAUL_4961
CSP501479
CRUT413404
CPSY167879
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPEL335992
CMUR243161
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CJAP155077
CHYD246194
CHUT269798
CHOM360107
CFET360106
CFEL264202
CEFF196164
CDES477974
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBLO291272
CBLO203907
CAULO CC3596
CACE272562
CABO218497
BXEN266265
BWEI315730
BVIE269482
BTUR314724
BTRI382640
BTHU412694
BTHU281309
BTHE226186
BTHA271848
BSUI470137
BSUI204722
BSUB
BSP376
BSP36773
BSP107806
BQUI283165
BPSE320373
BPSE320372
BPSE272560
BPET94624
BPER257313
BPAR257311
BOVI236
BMEL359391
BMEL224914
BMAL320389
BMAL320388
BMAL243160
BLON206672
BJAP224911
BHER314723
BHEN283166
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BCER572264
BCER405917 BCE_2981
BCER226900
BCEN331272
BCEN331271
BCAN483179
BBUR224326
BBRO257310
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BANT592021
BANT568206
BANT261594
BANT260799
BAMY326423
BAMB398577
BAMB339670
BAFZ390236
BABO262698
AYEL322098
AVAR240292
AURANTIMONAS
ASP76114
ASP62977
ASP62928
ASP232721
ASP1667
APHA212042
APER272557
AORE350688
ANAE240017
AMET293826
AMAR329726
AMAR234826
ALAI441768
AFUL224325
AFER243159
AEHR187272
ADEH290397
ACRY349163
ACEL351607
ACAU438753
ABUT367737
ABOR393595
ABAU360910
ABAC204669
AAVE397945
AAUR290340
AAEO224324


Organism features enriched in list (features available for 435 out of the 467 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 4.781e-114292
Arrangment:Clusters 0.0000802517
Arrangment:Pairs 1.559e-1450112
Disease:Gastroenteritis 0.0001100313
Disease:Pneumonia 0.0024129412
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.0001148211
Endospores:No 0.0001159139211
Endospores:Yes 0.00130673053
GC_Content_Range4:0-40 0.0001677141213
GC_Content_Range4:40-60 0.0017867153224
GC_Content_Range4:60-100 2.748e-15140145
GC_Content_Range7:0-30 0.00050332547
GC_Content_Range7:50-60 0.000408666107
GC_Content_Range7:60-70 6.956e-16131134
Genome_Size_Range5:0-2 0.0002789131155
Genome_Size_Range5:4-6 0.0000429118184
Genome_Size_Range5:6-10 0.00008334547
Genome_Size_Range9:1-2 0.0002476110128
Genome_Size_Range9:4-5 8.242e-65496
Genome_Size_Range9:6-8 0.00091883638
Gram_Stain:Gram_Neg 0.0042794261333
Gram_Stain:Gram_Pos 2.023e-1377150
Habitat:Aquatic 0.00001308391
Habitat:Host-associated 0.0011768139206
Habitat:Multiple 0.0015361119178
Habitat:Specialized 0.00047204953
Motility:No 0.000075195151
Optimal_temp.:- 0.0000362212257
Optimal_temp.:25-30 0.00346061919
Optimal_temp.:30-35 0.001308017
Optimal_temp.:30-37 2.985e-6418
Optimal_temp.:37 2.805e-954106
Oxygen_Req:Aerobic 6.378e-14172185
Oxygen_Req:Facultative 2.624e-3191201
Pathogenic_in:Human 4.847e-17116213
Pathogenic_in:No 8.029e-12202226
Salinity:Non-halophilic 3.945e-758106
Shape:Coccus 1.480e-64382
Shape:Irregular_coccus 0.00634901717
Shape:Spiral 0.00003373434
Temp._range:Hyperthermophilic 0.00841002223
Temp._range:Mesophilic 4.448e-7334473
Temp._range:Thermophilic 0.00786583235



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 9
Effective number of orgs (counting one per cluster within 468 clusters): 7

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
MPNE272634 ncbi Mycoplasma pneumoniae M129 0.0000562944
MHYO295358 ncbi Mycoplasma hyopneumoniae 232 0.00007531014
MHYO262719 ncbi Mycoplasma hyopneumoniae J 0.00008151034
MHYO262722 ncbi Mycoplasma hyopneumoniae 7448 0.00008481044
MSYN262723 ncbi Mycoplasma synoviae 53 0.00009161064
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP 0.00020941304
MPEN272633 ncbi Mycoplasma penetrans HF-2 0.00046071584
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG1 0.00059031684
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 27343 0.00061921704


Names of the homologs of the genes in the group in each of these orgs
  G7856   EG12554   EG12495   EG11791   
MPNE272634 MPN496MPN494MPN494MPN494
MHYO295358 MHP388MHP386MHP386MHP386
MHYO262719 MHJ_0372MHJ_0370MHJ_0370MHJ_0370
MHYO262722 MHP7448_0376MHP7448_0374MHP7448_0374MHP7448_0374
MSYN262723 MS53_0026MS53_0028MS53_0028MS53_0028
MPUL272635 MYPU_5940MYPU_5960MYPU_5960MYPU_5960
MPEN272633 MYPE7220MYPE4480MYPE7190MYPE7190
MMYC272632 MSC_0395MSC_0394MSC_0394MSC_0394
MCAP340047 MCAP_0590MCAP_0591MCAP_0591MCAP_0591


Organism features enriched in list (features available for 9 out of the 9 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Singles 0.00154179286
Disease:Enzootic_pneumonia 0.000212222
Endospores:No 0.00009549211
GC_Content_Range4:0-40 0.00010409213
GC_Content_Range7:0-30 8.364e-9847
Genome_Size_Range5:0-2 5.574e-69155
Genome_Size_Range9:0-1 4.185e-7627
Gram_Stain:Gram_Neg 0.00617419333
Habitat:Host-associated 0.00007659206
Motility:No 0.00142487151
Optimal_temp.:37 1.630e-79106
Oxygen_Req:Facultative 0.00006119201
Pathogenic_in:Swine 0.000025035
Salinity:Non-halophilic 1.630e-79106
Shape:Sphere 4.584e-15919



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
MANNIDEG-PWY (mannitol degradation I)99840.6118
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))121940.6092
PWY0-1314 (fructose degradation)2241300.5868
PWY0-301 (L-ascorbate degradation, anaerobic)84740.5855
GLCMANNANAUT-PWY (superpathway of N-acetylglucosamine, N-acetylmannosamine and N-acetylneuraminate degradation)134970.5849
PWY0-1324 (N-acetylneuraminate and N-acetylmannosamine degradation)135970.5811
LYXMET-PWY (L-lyxose degradation)87730.5582
P441-PWY (superpathway of N-acetylneuraminate degradation)63580.5284
PWY0-1295 (pyrimidine ribonucleosides degradation I)2391260.5202
PWY-5480 (pyruvate fermentation to ethanol I)109790.5155
PWY-5493 (reductive monocarboxylic acid cycle)2431260.5112
ARABCAT-PWY (L-arabinose degradation I)128820.4696
PWY0-522 (lipoate salvage and modification)2201130.4639
GLYCEROLMETAB-PWY (glycerol degradation V)116760.4580
SORBDEG-PWY (sorbitol degradation II)53470.4564
SUCUTIL-PWY (sucrose degradation I)124790.4563
P122-PWY (heterolactic fermentation)119770.4560
MANNCAT-PWY (D-mannose degradation)3081360.4549
PWY-5497 (purine nucleotides degradation IV (anaerobic))122780.4543
GLUAMCAT-PWY (N-acetylglucosamine degradation I)3561460.4467
LACTOSECAT-PWY (lactose and galactose degradation I)71550.4431
PWY0-1296 (purine ribonucleosides degradation)3161350.4328
PWY-1861 (formaldehyde assimilation II (RuMP Cycle))71530.4196
RUMP-PWY (formaldehyde oxidation I)68510.4124
RHAMCAT-PWY (rhamnose degradation)91610.4106
PWY0-181 (salvage pathways of pyrimidine deoxyribonucleotides)2871240.4047
METHIONINE-DEG1-PWY (methionine degradation I (to homocysteine))3159-.5072



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG12554   EG12495   EG11791   
G78560.9994850.999620.999472
EG125540.999640.999669
EG124950.999637
EG11791



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PAIRWISE BLAST SCORES:

  G7856   EG12554   EG12495   EG11791   
G78560.0f0---
EG12554-0.0f01.0e-182.1e-18
EG12495-1.0e-180.0f06.0e-21
EG11791-1.0e-169.0e-180.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- EIISGA (L-ascorbate transporting phosphotransferase system) (degree of match pw to cand: 0.400, degree of match cand to pw: 0.500, average score: 0.502)
  Genes in pathway or complex:
   *in cand* 0.9997 0.9996 EG12495 (ulaC) YJFU-MONOMER (UlaC)
             0.9992 0.9990 EG12494 (ulaB) YJFT-MONOMER (UlaB)
             0.3412 0.1033 EG10788 (ptsH) PTSH-MONOMER (HPr)
             0.3419 0.1599 EG10789 (ptsI) PTSI-MONOMER (PTS enzyme I)
   *in cand* 0.9996 0.9995 G7856 (ulaA) SGAT-MONOMER (UlaA)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9995 EG11791 (cmtB) CMTB-MONOMER (CmtB)
   *in cand* 0.9997 0.9995 EG12554 (sgcA) SGCA-MONOMER (SgcA)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG12495 G7856 (centered at EG12495)
EG11791 (centered at EG11791)
EG12554 (centered at EG12554)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7856   EG12554   EG12495   EG11791   
149/623158/623162/623156/623
AHYD196024:0:Tyes0222
APLE416269:0:Tyes1000
APLE434271:0:Tno1000
ASAL382245:5:Tyes2000
BCER288681:0:Tno0222
BCER315749:1:Tyes0222
BCER405917:1:Tyes0---
BCLA66692:0:Tyes632645061
BHAL272558:0:Tyes3027270
BLIC279010:0:Tyes2000
BPUM315750:0:Tyes0222
CAULO:0:Tyes-0--
CBEI290402:0:Tyes2178218021770
CBOT36826:1:Tno0222
CBOT441770:0:Tyes0222
CBOT441771:0:Tno0222
CBOT441772:1:Tno0222
CBOT498213:1:Tno1330
CBOT508765:1:Tyes01226226
CBOT515621:2:Tyes0222
CBOT536232:0:Tno0222
CDIF272563:1:Tyes0222
CDIP257309:0:Tyes1000
CGLU196627:0:Tyes0111
CMIC31964:2:Tyes-000
CMIC443906:2:Tyes-000
CNOV386415:0:Tyes-000
CPER195102:1:Tyes2000
CPER195103:0:Tno143000
CPER289380:3:Tyes2000
CSAL290398:0:Tyes-00-
CSP78:2:Tyes-0--
CTET212717:0:Tyes-000
DNOD246195:0:Tyes-0--
ECAR218491:0:Tyes0145021450
ECOL199310:0:Tno4847048503110
ECOL316407:0:Tno1248135012500
ECOL331111:6:Tno1428014300
ECOL362663:0:Tno1495014970
ECOL364106:1:Tno1456014580
ECOL405955:2:Tyes1404000
ECOL409438:6:Tyes1332013340
ECOL413997:0:Tno1322142413240
ECOL439855:4:Tno1515151715170
ECOL469008:0:Tno3019291930170
ECOL481805:0:Tno3051304930490
ECOL585034:0:Tno1329013310
ECOL585035:0:Tno1494161814960
ECOL585055:0:Tno1489166614910
ECOL585056:2:Tno1421158114230
ECOL585057:0:Tno1296012980
ECOL585397:0:Tno1537153915390
ECOL83334:0:Tno1407140914090
ECOLI:0:Tno1276138112780
ECOO157:0:Tno1371137313730
EFAE226185:3:Tyes0173317331733
EFER585054:1:Tyes1350013520
ESP42895:1:Tyes0222
FMAG334413:1:Tyes0222
GKAU235909:1:Tyes0222
GTHE420246:1:Tyes--0-
HAUR316274:2:Tyes--00
HDUC233412:0:Tyes1000
KPNE272620:0:Tyes-0-0
KPNE272620:2:Tyes0-2-
LACI272621:0:Tyes--0-
LCAS321967:1:Tyes2338000
LHEL405566:0:Tyes--0-
LINN272626:1:Tno01292129
LLAC272622:5:Tyes0222
LMES203120:1:Tyes0111
LMON169963:0:Tno7078550855
LMON265669:0:Tyes01642164
LPLA220668:0:Tyes03133132
LSPH444177:1:Tyes0222
LWEL386043:0:Tyes0223
LXYL281090:0:Tyes-000
MCAP340047:0:Tyes0111
MFLO265311:0:Tyes0---
MGIL350054:3:Tyes--0-
MHYO262719:0:Tyes2000
MHYO262722:0:Tno2000
MHYO295358:0:Tno2000
MMYC272632:0:Tyes1000
MPEN272633:0:Tyes2810278278
MPNE272634:0:Tyes2000
MPUL272635:0:Tyes0222
MSP400668:0:Tyes-0--
MSUC221988:0:Tyes100128
MSYN262723:0:Tyes0222
MVAN350058:0:Tyes--0-
OANT439375:4:Tyes--0-
OIHE221109:0:Tyes0222
PACN267747:0:Tyes0111
PING357804:0:Tyes0222
PLUM243265:0:Fyes2000
PMUL272843:1:Tyes0111
PPRO298386:1:Tyes0111
SAGA205921:0:Tno2000
SAGA208435:0:Tno2000
SAGA211110:0:Tyes2000
SAUR158878:1:Tno0222
SAUR158879:1:Tno0222
SAUR196620:0:Tno0222
SAUR273036:0:Tno0222
SAUR282458:0:Tno0222
SAUR282459:0:Tno0222
SAUR359786:1:Tno0222
SAUR359787:1:Tno0222
SAUR367830:3:Tno0222
SAUR418127:0:Tyes0222
SAUR426430:0:Tno0222
SAUR93061:0:Fno0222
SAUR93062:1:Tno0222
SBOY300268:1:Tyes1147011450
SCO:2:Fyes0---
SDYS300267:1:Tyes1115111711170
SENT209261:0:Tno373594937370
SENT220341:0:Tno3014030161017
SENT295319:0:Tno353470335360
SENT321314:2:Tno269802700743
SENT454169:2:Tno287402876760
SFLE198214:0:Tyes0222
SFLE373384:0:Tno0222
SGLO343509:3:Tyes-000
SGOR29390:0:Tyes2000
SHAE279808:0:Tyes---0
SHIGELLA:0:Tno0222
SMUT210007:0:Tyes0222
SPNE1313:0:Tyes2000
SPNE170187:0:Tyes2000
SPNE171101:0:Tno2000
SPNE487213:0:Tno2000
SPNE487214:0:Tno2000
SPNE488221:0:Tno2000
SPRO399741:1:Tyes3000
SPYO160490:0:Tno0140121401
SPYO186103:0:Tno0153021530
SPYO193567:0:Tno0157121571
SPYO198466:0:Tno0154521545
SPYO286636:0:Tno0150821508
SPYO293653:0:Tno0152921529
SPYO319701:0:Tyes0151921519
SPYO370551:0:Tno0153521535
SPYO370552:0:Tno0160221602
SPYO370553:0:Tno0155121551
SPYO370554:0:Tyes0162421624
SSAP342451:2:Tyes--00
SSON300269:1:Tyes-012100
SSUI391295:0:Tyes1900018981898
SSUI391296:0:Tyes1904019021902
STHE292459:0:Tyes0444
STYP99287:1:Tyes275002752726
TPSE340099:0:Tyes0111
TSP1755:0:Tyes1000
TTEN273068:0:Tyes1000
VCHO:1:Fyes1000
VCHO345073:0:Tno0111
VFIS312309:1:Tyes69000
VPAR223926:0:Tyes022271
VVUL196600:1:Tyes27302740
VVUL216895:0:Tno20402050
YENT393305:1:Tyes0222
YPES187410:5:Tno0333
YPES214092:3:Tno205000
YPES349746:2:Tno2000
YPES360102:3:Tyes2000
YPES377628:2:Tno4000
YPES386656:2:Tno2000
YPSE273123:2:Tno2000
YPSE349747:2:Tno0333



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