CANDIDATE ID: 305

CANDIDATE ID: 305

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9963017e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    2.5000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7575 (qseB) (b3025)
   Products of gene:
     - G7575-MONOMER (QseB transcriptional activator)
     - MONOMER0-2741 (QseB-Phosphorylated transcriptional activator)
       Regulatees:
        TU-8387 (qseBC)
        TU00136 (flhDC)

- EG12658 (qseC) (b3026)
   Products of gene:
     - EG12658-MONOMER (QseC sensory histidine kinase)
     - MONOMER0-4171 (QseC sensory histidine kinase - phosphorylated)

- EG11615 (basR) (basR)
   Products of gene:
     - BASR-MONOMER (BasR transcriptional regulator)
     - PHOSPHO-BASR (BasR-Phosphorylated transcriptional regulator)

- EG11614 (basS) (basS)
   Products of gene:
     - BASS-MONOMER (BasS sensory histidine kinase)
     - PHOSPHO-BASS (BasS sensory histidine kinase - phosphorylated)



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 178
Effective number of orgs (counting one per cluster within 468 clusters): 115

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola3
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110184
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103314
XCAM487884 Xanthomonas campestris pv. paulliniae3
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80043
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339133
XAUT78245 ncbi Xanthobacter autotrophicus Py24
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VEIS391735 ncbi Verminephrobacter eiseniae EF01-24
VCHO345073 ncbi Vibrio cholerae O3954
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252594
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
SSP94122 ncbi Shewanella sp. ANA-33
SSON300269 ncbi Shigella sonnei Ss0464
SPRO399741 ncbi Serratia proteamaculans 5684
SONE211586 ncbi Shewanella oneidensis MR-13
SMEL266834 ncbi Sinorhizobium meliloti 10213
SMED366394 ncbi Sinorhizobium medicae WSM4193
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SGLO343509 ncbi Sodalis glossinidius morsitans3
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170253
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170294
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.14
RSOL267608 ncbi Ralstonia solanacearum GMI10004
RPAL316058 ncbi Rhodopseudomonas palustris HaA24
RPAL316057 ncbi Rhodopseudomonas palustris BisB53
RPAL316056 ncbi Rhodopseudomonas palustris BisB184
RMET266264 ncbi Ralstonia metallidurans CH344
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38414
RFER338969 ncbi Rhodoferax ferrireducens T1184
REUT381666 ncbi Ralstonia eutropha H164
REUT264198 ncbi Ralstonia eutropha JMP1344
RETL347834 ncbi Rhizobium etli CFN 424
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP56811 Psychrobacter sp.3
PSP296591 ncbi Polaromonas sp. JS6664
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PNAP365044 ncbi Polaromonas naphthalenivorans CJ24
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PMEN399739 ncbi Pseudomonas mendocina ymp4
PING357804 ncbi Psychromonas ingrahamii 373
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PARC259536 ncbi Psychrobacter arcticus 273-43
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
OCAR504832 ncbi Oligotropha carboxidovorans OM53
OANT439375 ncbi Ochrobactrum anthropi ATCC 491884
NHAM323097 ncbi Nitrobacter hamburgensis X144
NEUT335283 ncbi Nitrosomonas eutropha C914
NEUR228410 ncbi Nitrosomonas europaea ATCC 197184
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124443
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSP409 Methylobacterium sp.4
MSP400668 ncbi Marinomonas sp. MWYL14
MPET420662 ncbi Methylibium petroleiphilum PM14
MLOT266835 ncbi Mesorhizobium loti MAFF3030994
MFLA265072 ncbi Methylobacillus flagellatus KT4
MCAP243233 ncbi Methylococcus capsulatus Bath4
MAQU351348 ncbi Marinobacter aquaeolei VT84
LPNE400673 ncbi Legionella pneumophila Corby4
LPNE297246 ncbi Legionella pneumophila Paris4
LPNE297245 ncbi Legionella pneumophila Lens4
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 14
LCHO395495 ncbi Leptothrix cholodnii SP-64
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP375286 ncbi Janthinobacterium sp. Marseille4
ILOI283942 ncbi Idiomarina loihiensis L2TR4
HINF71421 ncbi Haemophilus influenzae Rd KW204
HINF374930 ncbi Haemophilus influenzae PittEE4
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HARS204773 ncbi Herminiimonas arsenicoxydans4
GMET269799 ncbi Geobacter metallireducens GS-154
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-004
FTUL418136 ncbi Francisella tularensis tularensis WY96-34184
FTUL401614 ncbi Francisella novicida U1124
FTUL393115 ncbi Francisella tularensis tularensis FSC1984
FTUL393011 ncbi Francisella tularensis holarctica OSU184
FTUL351581 Francisella tularensis holarctica FSC2004
FRANT ncbi Francisella tularensis tularensis SCHU S44
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250174
ESP42895 Enterobacter sp.4
ELIT314225 ncbi Erythrobacter litoralis HTCC25943
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DARO159087 ncbi Dechloromonas aromatica RCB4
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CTEP194439 ncbi Chlorobium tepidum TLS3
CSP78 Caulobacter sp.3
CSP501479 Citreicella sp. SE454
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CPSY167879 ncbi Colwellia psychrerythraea 34H3
CJAP155077 Cellvibrio japonicus4
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1114
CBUR360115 ncbi Coxiella burnetii RSA 3314
CBUR227377 ncbi Coxiella burnetii RSA 4934
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTHA271848 ncbi Burkholderia thailandensis E2644
BSP36773 Burkholderia sp.4
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii4
BPER257313 ncbi Bordetella pertussis Tohama I4
BPAR257311 ncbi Bordetella parapertussis 128224
BOVI236 Brucella ovis3
BMEL359391 ncbi Brucella melitensis biovar Abortus 23083
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M3
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BBRO257310 ncbi Bordetella bronchiseptica RB504
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9413
ASP76114 ncbi Aromatoleum aromaticum EbN14
ASP62977 ncbi Acinetobacter sp. ADP14
ASP62928 ncbi Azoarcus sp. BH724
ASP232721 ncbi Acidovorax sp. JS424
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AHYD196024 Aeromonas hydrophila dhakensis4
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232704
ACAU438753 ncbi Azorhizobium caulinodans ORS 5713
ABOR393595 ncbi Alcanivorax borkumensis SK24
ABAU360910 ncbi Bordetella avium 197N4
AAVE397945 ncbi Acidovorax citrulli AAC00-14


Names of the homologs of the genes in the group in each of these orgs
  G7575   EG12658   EG11615   EG11614   
YPSE349747 YPSIP31758_3607YPSIP31758_3608YPSIP31758_3607YPSIP31758_3608
YPSE273123 YPTB0469YPTB0468YPTB0469YPTB0468
YPES386656 YPDSF_3556YPDSF_3557YPDSF_3556YPDSF_3557
YPES377628 YPN_3251YPN_3252YPN_3251YPN_3252
YPES360102 YPA_0057YPA_0058YPA_0057YPA_0058
YPES349746 YPANGOLA_A3980YPANGOLA_A3980YPANGOLA_A3979
YPES214092 YPO3507YPO3508YPO3507YPO3508
YPES187410 Y0677Y0676Y0677Y0676
YENT393305 YE0423YE0422YE0423YE0422
XORY342109 XOO1083XOO1084XOO1083XOO1084
XORY291331 XOO1188XOO1189XOO1188XOO1189
XCAM487884 XCC-B100_0846XCC-B100_4083XCC-B100_0846
XCAM314565 XC_0813XC_3981XC_0813
XCAM190485 XCC3351XCC3893XCC3351
XAUT78245 XAUT_1075XAUT_1076XAUT_1075XAUT_1076
VVUL216895 VV2_1278VV2_1277VV2_1278VV2_1277
VVUL196600 VVA0113VVA0112VVA0113VVA0112
VPAR223926 VP1734VP1735VP1734VP1735
VEIS391735 VEIS_0357VEIS_0358VEIS_0357VEIS_0358
VCHO345073 VC0395_0139VC0395_0140VC0395_0139VC0395_0140
TDEN292415 TBD_0136TBD_0135TBD_0136TBD_0135
STYP99287 STM3177STM3178STM4292STM4291
SSP94122 SHEWANA3_1885SHEWANA3_1886SHEWANA3_1886
SSON300269 SSO_3164SSO_3165SSO_4288SSO_4287
SPRO399741 SPRO_3990SPRO_3989SPRO_0478SPRO_0477
SONE211586 SO_2104SO_2105SO_2105
SMEL266834 SMC00458SMC00458SMC02367
SMED366394 SMED_0630SMED_6028SMED_6029
SHIGELLA YGIXYGIYBASRBASS
SGLO343509 SG0959SG0959SG0960
SFLE373384 SFV_3071SFV_3072SFV_4117SFV_4118
SFLE198214 AAN44544.1AAN44545.1AAN45535.1AAN45536.1
SENT454169 SEHA_C3427SEHA_C3428SEHA_C4638SEHA_C4637
SENT321314 SCH_3121SCH_3122SCH_4171SCH_4170
SENT295319 SPA3046SPA3047SPA4110SPA4109
SENT220341 STY3354STY3355STY4491STY4490
SENT209261 T3098T3099T4199T4198
SDYS300267 SDY_3214SDY_3213SDY_3214SDY_4101
SBOY300268 SBO_2884SBO_2885SBO_4140SBO_4139
SBAL402882 SHEW185_1920SHEW185_1921SHEW185_1920SHEW185_1921
SBAL399599 SBAL195_1927SBAL195_1928SBAL195_1927SBAL195_1928
RSPH349102 RSPH17025_3680RSPH17025_3681RSPH17025_3680
RSPH349101 RSPH17029_3075RSPH17029_3076RSPH17029_3815RSPH17029_3076
RSPH272943 RSP_3430RSP_3431RSP_3088RSP_3431
RSOL267608 RSP1554RSP1553RSP1554RSP1553
RPAL316058 RPB_4359RPB_4358RPB_4359RPB_4358
RPAL316057 RPD_4243RPD_4242RPD_4243
RPAL316056 RPC_4906RPC_4905RPC_4906RPC_4905
RMET266264 RMET_5798RMET_4830RMET_4829RMET_5797
RLEG216596 RL2277RL2278PRL120667RL2278
RFER338969 RFER_0503RFER_0504RFER_3820RFER_0504
REUT381666 H16_A1427H16_A1428H16_B2563H16_B2562
REUT264198 REUT_A1337REUT_A1338REUT_B5326REUT_B5325
RETL347834 RHE_CH01286RHE_PF00310RHE_PF00311RHE_PF00310
PSYR223283 PSPTO_1894PSPTO_1893PSPTO_1894PSPTO_1893
PSYR205918 PSYR_3511PSYR_3512PSYR_3511PSYR_3512
PSTU379731 PST_0906PST_0905PST_2709PST_0905
PSP56811 PSYCPRWF_0692PSYCPRWF_0693PSYCPRWF_0692
PSP296591 BPRO_4632BPRO_3675BPRO_3674BPRO_4688
PPUT76869 PPUTGB1_3792PPUTGB1_3791PPUTGB1_3792PPUTGB1_4390
PPUT351746 PPUT_1638PPUT_1639PPUT_3039PPUT_3038
PPUT160488 PP_4225PP_4224PP_2713PP_2714
PNAP365044 PNAP_1535PNAP_1536PNAP_1535PNAP_1536
PMUL272843 PM0214PM0215PM0214PM0215
PMEN399739 PMEN_1995PMEN_1460PMEN_1459PMEN_1460
PING357804 PING_1228PING_1229PING_1228
PFLU220664 PFL_4181PFL_3853PFL_3852PFL_1442
PFLU216595 PFLU3126PFLU5110PFLU5111PFLU3127
PFLU205922 PFL_3354PFL_3934PFL_3354PFL_3355
PENT384676 PSEEN3671PSEEN3670PSEEN2757PSEEN2758
PATL342610 PATL_0644PATL_0643PATL_0644PATL_0643
PARC259536 PSYC_2076PSYC_2077PSYC_2076
PAER208964 PA4776PA4777PA2479PA0757
PAER208963 PA14_63150PA14_63160PA14_32580PA14_54500
OCAR504832 OCAR_4874OCAR_4873OCAR_4874
OANT439375 OANT_3252OANT_3251OANT_3516OANT_0470
NHAM323097 NHAM_0998NHAM_3294NHAM_0998NHAM_0997
NEUT335283 NEUT_1564NEUT_1565NEUT_1564NEUT_1565
NEUR228410 NE0344NE0343NE0344NE0343
NARO279238 SARO_2066SARO_2066SARO_0442
MSUC221988 MS1246MS1244MS1246MS1244
MSP409 M446_0136M446_0137M446_6140M446_6141
MSP400668 MMWYL1_2328MMWYL1_2327MMWYL1_2328MMWYL1_4162
MPET420662 MPE_A2754MPE_A2755MPE_A3169MPE_A2755
MLOT266835 MLR7684MLL7952MLL7953MLL7952
MFLA265072 MFLA_1307MFLA_1308MFLA_1307MFLA_1308
MCAP243233 MCA_1939MCA_1938MCA_1764MCA_1765
MAQU351348 MAQU_0286MAQU_0285MAQU_0286MAQU_0285
LPNE400673 LPC_0716LPC_0715LPC_0716LPC_0715
LPNE297246 LPP1255LPP1254LPP1255LPP1254
LPNE297245 LPL1254LPL1253LPL1254LPL1253
LPNE272624 LPG1292LPG1291LPG1292LPG1291
LCHO395495 LCHO_2624LCHO_3012LCHO_3011LCHO_0275
KPNE272620 GKPORF_B2772GKPORF_B2773GKPORF_B5234GKPORF_B5233
JSP375286 MMA_2863MMA_2864MMA_3063MMA_2864
ILOI283942 IL0095IL1647IL0095IL1647
HINF71421 HI_1708HI_1707HI_1708HI_1707
HINF374930 CGSHIEE_03490CGSHIEE_03495CGSHIEE_03490CGSHIEE_03495
HINF281310 NTHI2016NTHI2015NTHI2016NTHI2015
HCHE349521 HCH_06618HCH_06619HCH_06618HCH_06619
HARS204773 HEAR2100HEAR2101HEAR2689HEAR2631
GMET269799 GMET_0688GMET_0687GMET_0688GMET_0687
FTUL458234 FTA_0585FTA_1869FTA_0585FTA_1869
FTUL418136 FTW_0370FTW_0175FTW_0370FTW_0175
FTUL401614 FTN_1465FTN_1617FTN_1465FTN_1617
FTUL393115 FTF1557CFTF0094CFTF1557CFTF0094C
FTUL393011 FTH_0553FTH_1701FTH_0553FTH_1701
FTUL351581 FTL_0552FTL_1762FTL_0552FTL_1762
FRANT FT.1559CQSECFT.1559CQSEC
FPHI484022 FPHI_1209FPHI_1001FPHI_1209FPHI_1001
ESP42895 ENT638_3429ENT638_3430ENT638_3617ENT638_3618
ELIT314225 ELI_03645ELI_03645ELI_11925
EFER585054 EFER_2967EFER_2968EFER_4172EFER_4171
ECOO157 YGIXYGIYBASRBASS
ECOL83334 ECS3907ECS3909ECS5095ECS5094
ECOL585397 ECED1_3682ECED1_3683ECED1_4847ECED1_4846
ECOL585057 ECIAI39_3520ECIAI39_3521ECIAI39_4537ECIAI39_4536
ECOL585056 ECUMN_3510ECUMN_3511ECUMN_4645ECUMN_4644
ECOL585055 EC55989_3441EC55989_3442EC55989_4604EC55989_4603
ECOL585035 ECS88_3411ECS88_3412ECS88_4615ECS88_4614
ECOL585034 ECIAI1_3173ECIAI1_3174ECIAI1_4343ECIAI1_4342
ECOL481805 ECOLC_0672ECOLC_0671ECOLC_3914ECOLC_3915
ECOL469008 ECBD_0714ECBD_0713ECBD_3918ECBD_3919
ECOL439855 ECSMS35_3314ECSMS35_3315ECSMS35_4578ECSMS35_4577
ECOL413997 ECB_02897ECB_02898ECB_03984ECB_03983
ECOL409438 ECSE_3306ECSE_3307ECSE_4411ECSE_4410
ECOL405955 APECO1_3396APECO1_3395APECO1_2338APECO1_2339
ECOL364106 UTI89_C3450UTI89_C3451UTI89_C4707UTI89_C4706
ECOL362663 ECP_3112ECP_3113ECP_4356ECP_4355
ECOL331111 ECE24377A_3490ECE24377A_3491ECE24377A_4667ECE24377A_4666
ECOL316407 ECK3016:JW2993:B3025ECK3017:JW2994:B3026ECK4106:JW4074:B4113ECK4105:JW4073:B4112
ECOL199310 C3764C3765C5118C5117
ECAR218491 ECA0008ECA0007ECA4044ECA4045
DARO159087 DARO_2815DARO_2816DARO_2815DARO_1580
CVIO243365 CV_0891CV_0892CV_0891CV_0892
CTEP194439 CT_0194CT_0195CT_0194
CSP78 CAUL_2423CAUL_2424CAUL_3896
CSP501479 CSE45_2955CSE45_2956CSE45_2955CSE45_2956
CSAL290398 CSAL_1783CSAL_1782CSAL_1783CSAL_1782
CPSY167879 CPS_2786CPS_2786CPS_2785
CJAP155077 CJA_0139CJA_3510CJA_3511CJA_3510
CBUR434922 COXBU7E912_1312COXBU7E912_1313COXBU7E912_1312COXBU7E912_1313
CBUR360115 COXBURSA331_A1372COXBURSA331_A1373COXBURSA331_A1372COXBURSA331_A1373
CBUR227377 CBU_1227CBU_1228CBU_1227CBU_1228
BVIE269482 BCEP1808_2733BCEP1808_6287BCEP1808_5450BCEP1808_2765
BTHA271848 BTH_I0673BTH_I0674BTH_II1765BTH_I0641
BSP36773 BCEP18194_A5949BCEP18194_B1763BCEP18194_B0768BCEP18194_A5981
BPSE320373 BURPS668_0845BURPS668_A0957BURPS668_A0958BURPS668_0808
BPSE320372 BURPS1710B_A1062BURPS1710B_A1063BURPS1710B_B2592BURPS1710B_A1024
BPSE272560 BPSL0806BPSL0807BPSS0643BPSL0774
BPET94624 BPET2692BPET2054BPET2692BPET2054
BPER257313 BP3534BP2206BP3534BP2548
BPAR257311 BPP2861BPP2862BPP2538BPP2631
BOVI236 GBOORFA0229GBOORFA0228GBOORFA0229
BMEL359391 BAB2_0222BAB2_0221BAB2_0222
BMEL224914 BMEII1014BMEII1015BMEII1014
BMAL320389 BMA10247_0051BMA10247_0052BMA10247_A1570BMA10247_0019
BMAL320388 BMASAVP1_A0603BMASAVP1_A0604BMASAVP1_A0603BMASAVP1_A2670
BMAL243160 BMA_0308BMA_0309BMA_A0830BMA_0270
BCEN331272 BCEN2424_2618BCEN2424_4925BCEN2424_4924BCEN2424_2654
BCEN331271 BCEN_3443BCEN_3442BCEN_3443BCEN_2043
BBRO257310 BB3182BB3183BB1983BB2074
BAMB398577 BAMMC406_6226BAMMC406_6227BAMMC406_4873BAMMC406_2575
BAMB339670 BAMB_2665BAMB_4357BAMB_4356BAMB_2701
BABO262698 BRUAB2_0224BRUAB2_0223BRUAB2_0224
ASP76114 EBA6235EBA6233EBA6235EBA1181
ASP62977 ACIAD2961ACIAD2960ACIAD2239ACIAD2238
ASP62928 AZO0264AZO0263AZO0264AZO0263
ASP232721 AJS_3999AJS_1359AJS_1953AJS_1640
ASAL382245 ASA_1091ASA_1090ASA_1091ASA_1090
APLE434271 APJL_1079APJL_1080APJL_1079APJL_1080
APLE416269 APL_1063APL_1064APL_1063APL_1064
AHYD196024 AHA_3222AHA_3223AHA_3222AHA_3223
AFER243159 AFE_1062AFE_1063AFE_1062AFE_1063
ACAU438753 AZC_1129AZC_1941AZC_1129
ABOR393595 ABO_0031ABO_2000ABO_2001ABO_2000
ABAU360910 BAV2117BAV2311BAV2117BAV2311
AAVE397945 AAVE_3964AAVE_3963AAVE_3964AAVE_4637


Organism features enriched in list (features available for 165 out of the 178 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00361591692
Arrangment:Singles 0.006310893286
Disease:Bubonic_plague 0.000481066
Disease:Dysentery 0.000481066
Disease:Gastroenteritis 0.00029901013
Disease:Legionnaire's_disease 0.006249444
Disease:Tularemia 0.001737755
Endospores:No 7.504e-1029211
GC_Content_Range4:0-40 1.955e-2015213
GC_Content_Range4:40-60 0.000020685224
GC_Content_Range4:60-100 3.723e-765145
GC_Content_Range7:30-40 2.533e-1215166
GC_Content_Range7:50-60 1.270e-753107
GC_Content_Range7:60-70 6.386e-965134
Genome_Size_Range5:0-2 1.229e-1410155
Genome_Size_Range5:2-4 1.335e-730197
Genome_Size_Range5:4-6 5.339e-1998184
Genome_Size_Range5:6-10 8.872e-62747
Genome_Size_Range9:1-2 1.980e-1010128
Genome_Size_Range9:2-3 3.199e-615120
Genome_Size_Range9:4-5 1.090e-85196
Genome_Size_Range9:5-6 4.068e-84788
Genome_Size_Range9:6-8 1.020e-72638
Gram_Stain:Gram_Neg 9.441e-32153333
Habitat:Multiple 0.000021571178
Habitat:Specialized 0.0094786853
Motility:No 3.441e-720151
Motility:Yes 2.869e-8105267
Optimal_temp.:- 0.002299487257
Optimal_temp.:25-30 0.00440551119
Oxygen_Req:Anaerobic 9.101e-115102
Oxygen_Req:Facultative 4.427e-885201
Pathogenic_in:Animal 0.00072743066
Pathogenic_in:No 0.002269550226
Shape:Coccobacillus 0.0002894911
Shape:Coccus 4.724e-7682
Shape:Rod 1.654e-19144347
Temp._range:Mesophilic 0.0001037149473
Temp._range:Thermophilic 0.0006254235



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 420
Effective number of orgs (counting one per cluster within 468 clusters): 336

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XFAS405440 ncbi Xylella fastidiosa M121
XFAS183190 ncbi Xylella fastidiosa Temecula11
WSUC273121 ncbi Wolinella succinogenes DSM 17401
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VFIS312309 ncbi Vibrio fischeri ES1140
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79010
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-11
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE292459 ncbi Symbiobacterium thermophilum IAM 148630
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93111
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96051
SSOL273057 ncbi Sulfolobus solfataricus P20
SSED425104 ncbi Shewanella sediminis HAW-EB31
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SPEA398579 ncbi Shewanella pealeana ATCC 7003450
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SLOI323850 ncbi Shewanella loihica PV-40
SLAC55218 Ruegeria lacuscaerulensis1
SHAL458817 ncbi Shewanella halifaxensis HAW-EB40
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2171
SDEG203122 ncbi Saccharophagus degradans 2-400
SCO ncbi Streptomyces coelicolor A3(2)0
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2051
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP357808 ncbi Roseiflexus sp. RS-11
RSP101510 ncbi Rhodococcus jostii RHA11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111700
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-30
RPAL258594 ncbi Rhodopseudomonas palustris CGA0091
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RDEN375451 ncbi Roseobacter denitrificans OCh 1141
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PPRO298386 ncbi Photobacterium profundum SS90
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PMOB403833 ncbi Petrotoga mobilis SJ951
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO11
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1251
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PCAR338963 ncbi Pelobacter carbinolicus DSM 23801
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8310
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP35761 Nocardioides sp.0
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197071
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534421
NMEN272831 ncbi Neisseria meningitidis FAM181
NMEN122587 ncbi Neisseria meningitidis Z24911
NMEN122586 ncbi Neisseria meningitidis MC581
NFAR247156 ncbi Nocardia farcinica IFM 101520
MXAN246197 ncbi Myxococcus xanthus DK 16220
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390731
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1550
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-11
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MEXT419610 ncbi Methylobacterium extorquens PA11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-411
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
JSP290400 ncbi Jannaschia sp. CCS11
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GURA351605 ncbi Geobacter uraniireducens Rf41
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-21
GSUL243231 ncbi Geobacter sulfurreducens PCA0
GOXY290633 ncbi Gluconobacter oxydans 621H0
GKAU235909 ncbi Geobacillus kaustophilus HTA4261
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP106370 ncbi Frankia sp. CcI30
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DSHI398580 ncbi Dinoroseobacter shibae DFL 121
DRED349161 ncbi Desulfotomaculum reducens MI-10
DRAD243230 ncbi Deinococcus radiodurans R11
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DHAF138119 ncbi Desulfitobacterium hafniense Y510
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29010
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDIF272563 ncbi Clostridium difficile 6300
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138261
CCHL340177 ncbi Chlorobium chlorochromatii CaD31
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80521
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
CABO218497 ncbi Chlamydophila abortus S26/30
BWEI315730 ncbi Bacillus weihenstephanensis KBAB41
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054761
BTHU412694 ncbi Bacillus thuringiensis Al Hakam1
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-271
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSUI470137 ncbi Brucella suis ATCC 234451
BSUB ncbi Bacillus subtilis subtilis 1680
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPUM315750 ncbi Bacillus pumilus SAFR-0320
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145800
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BHAL272558 ncbi Bacillus halodurans C-1250
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCLA66692 ncbi Bacillus clausii KSM-K160
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1021
BCER405917 Bacillus cereus W1
BCER315749 ncbi Bacillus cytotoxicus NVH 391-980
BCER288681 ncbi Bacillus cereus E33L1
BCER226900 ncbi Bacillus cereus ATCC 145791
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02481
BANT568206 ncbi Bacillus anthracis CDC 6841
BANT261594 ncbi Bacillus anthracis Ames Ancestor1
BANT260799 ncbi Bacillus anthracis Sterne1
BAMY326423 ncbi Bacillus amyloliquefaciens FZB420
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.0
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG10
AMET293826 ncbi Alkaliphilus metalliredigens QYMF0
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACRY349163 ncbi Acidiphilium cryptum JF-50
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40180
AAUR290340 ncbi Arthrobacter aurescens TC11
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G7575   EG12658   EG11615   EG11614   
XFAS405440 XFASM12_0287
XFAS183190 PD_0266
WSUC273121 WS0640
WPIP955
WPIP80849
VFIS312309
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTUR377629
TTHE300852 TTHA1363
TTHE262724 TT_C0998
TTEN273068
TSP28240
TSP1755
TROS309801
TPSE340099
TPET390874
TPEN368408
TPAL243276
TMAR243274
TLET416591
TKOD69014
TFUS269800
TERY203124
TELO197221 TLL1910
TDEN326298
TDEN243275
TCRU317025
TACI273075
SWOL335541
STRO369723 STROP_1594
STOK273063
STHE322159
STHE299768
STHE292459
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471 GSYN0709
SSP387093
SSP321332
SSP321327
SSP1148
SSP1131 SYNCC9605_1617
SSOL273057
SSED425104 SSED_0167
SSAP342451
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SPEA398579
SMUT210007
SMAR399550
SLOI323850
SLAC55218 SL1157_1045
SHAL458817
SHAE279808
SGOR29390
SFUM335543
SERY405948 SACE_2832
SEPI176280
SEPI176279
SELO269084
SDEN318161 SDEN_0110
SDEG203122
SCO
SAVE227882
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037 SARE_1383
SAGA211110
SAGA208435
SAGA205921
SACI56780
SACI330779
RXYL266117
RTYP257363
RSP357808 ROSERS_2626
RSP101510 RHA1_RO00073
RSAL288705
RRUB269796
RRIC452659
RRIC392021
RPRO272947
RPOM246200
RPAL258594 RPA1915
RMAS416276
RFEL315456
RDEN375451 RD1_2944
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PTHE370438
PSP312153
PSP117
PRUM264731
PPRO298386
PPEN278197 PEPE_1796
PMOB403833 PMOB_0851
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PLUM243265 PLU3178
PISL384616
PINT246198
PHOR70601
PHAL326442 PSHAB0161
PGIN242619
PFUR186497
PDIS435591
PCRY335284
PCAR338963 PCAR_3082
PAST100379
PARS340102
PAER178306
PACN267747
PABY272844
OTSU357244
OIHE221109
NSP387092
NSP35761
NSP103690
NSEN222891
NPHA348780
NOCE323261 NOC_1354
NMUL323848
NMEN374833 NMCC_0434
NMEN272831 NMC0429
NMEN122587 NMA0670
NMEN122586 NMB_1792
NFAR247156
MXAN246197
MVAN350058
MTUB419947
MTUB336982
MTHE349307
MTHE264732 MOTH_1478
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP189918
MSP164757
MSP164756
MSME246196
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407
MMAR267377
MMAG342108 AMB3243
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MEXT419610 MEXT_1411
MCAP340047
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAER449447
MAEO419665
MACE188937
MABS561007 MAB_1721
LXYL281090
LWEL386043
LSPH444177 BSPH_4524
LSAK314315
LREU557436
LPLA220668
LMON265669
LMON169963
LMES203120
LLAC272623 L0128
LLAC272622 LACR_1092
LJOH257314
LINT363253
LINT267671
LINT189518
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967 LSEI_2680
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
KRAD266940 KRAD_2802
JSP290400 JANN_3492
IHOS453591
HWAL362976
HSP64091
HSOM228400
HSOM205914
HSAL478009
HPYL85963
HPYL357544
HPY
HMUK485914
HMOD498761
HMAR272569
HHEP235279
HHAL349124
HDUC233412
HBUT415426
HAUR316274
HACI382638
GVIO251221
GURA351605 GURA_1986
GTHE420246 GTNG_2302
GSUL243231
GOXY290633
GKAU235909 GK2373
GFOR411154
GBET391165
FSUC59374
FSP106370
FNUC190304
FNOD381764
FMAG334413
FJOH376686
FALN326424
ERUM302409
ERUM254945
EFAE226185
ECHA205920
ECAN269484
DVUL882
DSP255470
DSP216389
DSHI398580 DSHI_3125
DRED349161
DRAD243230 DR_2328
DPSY177439
DOLE96561
DNOD246195
DHAF138119
DGEO319795
DETH243164
DDES207559
CVES412965
CTRA471473
CTRA471472
CTET212717
CSUL444179
CRUT413404
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPER289380
CPER195103
CPER195102
CPEL335992
CNOV386415
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CHYD246194
CHUT269798
CHOM360107
CGLU196627
CFET360106
CFEL264202
CEFF196164
CDIP257309
CDIF272563
CDES477974
CCUR360105
CCON360104 CCC13826_1969
CCHL340177 CAG_0439
CCAV227941
CBOT536232
CBOT515621
CBOT508765
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CBLO291272
CBLO203907
CBEI290402 CBEI_3564
CACE272562
CABO218497
BWEI315730 BCERKBAB4_1216
BTUR314724
BTRI382640 BT_0698
BTHU412694 BALH_1163
BTHU281309 BT9727_1192
BTHE226186
BSUI470137 BSUIS_B0234
BSUB
BSP107806
BQUI283165
BPUM315750
BLON206672
BLIC279010
BHER314723
BHEN283166
BHAL272558
BGAR290434
BFRA295405
BFRA272559
BCLA66692
BCIC186490
BCER572264 BCA_1352
BCER405917 BCE_1414
BCER315749
BCER288681 BCE33L1194
BCER226900 BC_1301
BBUR224326
BBAC360095
BAPH372461
BAPH198804
BANT592021 BAA_1380
BANT568206 BAMEG_3284
BANT261594 GBAA1313
BANT260799 BAS1214
BAMY326423
BAFZ390236
AYEL322098
AVAR240292
AURANTIMONAS
ASP1667
APHA212042
APER272557
AORE350688
ANAE240017
AMET293826
AMAR329726
AMAR234826
ALAI441768
AFUL224325
AEHR187272
ADEH290397
ACRY349163
ACEL351607
ABUT367737
AAUR290340 AAUR_0802
AAEO224324


Organism features enriched in list (features available for 397 out of the 420 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00083387592
Arrangment:Clusters 0.00130161717
Arrangment:Singles 0.0054549182286
Disease:Gastroenteritis 0.0008760313
Endospores:No 9.983e-12179211
Endospores:Yes 4.321e-105353
GC_Content_Range4:0-40 1.108e-25198213
GC_Content_Range4:40-60 0.0000170130224
GC_Content_Range4:60-100 4.336e-1068145
GC_Content_Range7:0-30 5.658e-94747
GC_Content_Range7:30-40 1.001e-15151166
GC_Content_Range7:50-60 5.735e-947107
GC_Content_Range7:60-70 1.457e-1257134
Genome_Size_Range5:0-2 4.146e-18145155
Genome_Size_Range5:2-4 2.233e-6158197
Genome_Size_Range5:4-6 1.527e-2076184
Genome_Size_Range5:6-10 8.408e-61847
Genome_Size_Range9:0-1 0.00002332727
Genome_Size_Range9:1-2 5.204e-13118128
Genome_Size_Range9:2-3 1.785e-6102120
Genome_Size_Range9:4-5 1.100e-84196
Genome_Size_Range9:5-6 1.777e-93588
Genome_Size_Range9:6-8 1.571e-61238
Gram_Stain:Gram_Neg 8.506e-38160333
Gram_Stain:Gram_Pos 9.475e-31150150
Habitat:Multiple 0.0000458101178
Habitat:Specialized 0.00216504553
Motility:No 4.942e-9130151
Motility:Yes 8.613e-10148267
Optimal_temp.:- 0.0071548163257
Optimal_temp.:25-30 2.423e-6319
Optimal_temp.:30-37 0.00087391818
Oxygen_Req:Aerobic 0.0036645113185
Oxygen_Req:Anaerobic 5.412e-1296102
Oxygen_Req:Facultative 7.920e-7111201
Pathogenic_in:Animal 0.00266253566
Pathogenic_in:No 0.0063266166226
Pathogenic_in:Plant 0.0043913515
Shape:Coccobacillus 0.0000704111
Shape:Coccus 7.830e-87582
Shape:Irregular_coccus 0.00130161717
Shape:Rod 2.583e-18190347
Shape:Sphere 0.00546581819
Shape:Spiral 1.320e-63434
Temp._range:Hyperthermophilic 0.00011772323
Temp._range:Mesophilic 0.0004226308473
Temp._range:Thermophilic 0.00074993235



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181460.6236
GLYCOCAT-PWY (glycogen degradation I)2461560.6230
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951340.5998
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001700.5994
PWY-5918 (heme biosynthesis I)2721610.5967
TYRFUMCAT-PWY (tyrosine degradation I)1841290.5953
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861630.5796
PWY-4041 (γ-glutamyl cycle)2791600.5737
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911630.5687
PWY-1269 (CMP-KDO biosynthesis I)3251720.5629
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911270.5581
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961630.5580
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901610.5566
AST-PWY (arginine degradation II (AST pathway))120950.5470
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481740.5336
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251360.5305
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391710.5289
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491060.5283
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761170.5265
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831180.5126
PWY-5913 (TCA cycle variation IV)3011580.5119
PWY-5148 (acyl-CoA hydrolysis)2271330.5031
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001560.4998
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112860.4997
GALACTITOLCAT-PWY (galactitol degradation)73660.4987
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911180.4888
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491380.4850
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491380.4850
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96760.4780
PWY0-981 (taurine degradation IV)106800.4701
GLUCONSUPER-PWY (D-gluconate degradation)2291290.4685
GLUCARDEG-PWY (D-glucarate degradation I)152990.4597
P344-PWY (acrylonitrile degradation)2101210.4585
PWY-3162 (tryptophan degradation V (side chain pathway))94730.4580
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551360.4563
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291580.4555
PWY-5386 (methylglyoxal degradation I)3051510.4539
P601-PWY (D-camphor degradation)95730.4532
PWY0-1182 (trehalose degradation II (trehalase))70600.4500
PWY-46 (putrescine biosynthesis III)138920.4498
GALACTCAT-PWY (D-galactonate degradation)104760.4410
PWY-6087 (4-chlorocatechol degradation)2231230.4394
GALACTARDEG-PWY (D-galactarate degradation I)151960.4383
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)156980.4382
PWY-5028 (histidine degradation II)130870.4359
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135890.4349
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138900.4327
LIPASYN-PWY (phospholipases)2121180.4307
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981710.4238
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)2121170.4232
PWY-1501 (mandelate degradation I)73590.4214
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81630.4211
PWY-6193 (3-chlorocatechol degradation II (ortho))1941100.4187
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135870.4177
DAPLYSINESYN-PWY (lysine biosynthesis I)3421560.4162
PWY-5669 (phosphatidylethanolamine biosynthesis I)4161740.4160
KDOSYN-PWY (KDO transfer to lipid IVA I)1801030.4043



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG12658   EG11615   EG11614   
G75750.9997610.9996870.999507
EG126580.9995890.999596
EG116150.999641
EG11614



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PAIRWISE BLAST SCORES:

  G7575   EG12658   EG11615   EG11614   
G75750.0f0-9.5e-46-
EG12658-0.0f0--
EG116151.5e-40-0.0f0-
EG11614-3.3e-31-0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11614 EG11615 (centered at EG11615)
EG12658 G7575 (centered at EG12658)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7575   EG12658   EG11615   EG11614   
193/623201/623198/623207/623
AAUR290340:2:Tyes---0
AAVE397945:0:Tyes101666
ABAC204669:0:Tyes-7520-
ABAU360910:0:Tyes01990199
ABOR393595:0:Tyes0200720082007
ACAU438753:0:Tyes08240-
AFER243159:0:Tyes0101
AHYD196024:0:Tyes0101
APLE416269:0:Tyes0101
APLE434271:0:Tno0101
ASAL382245:5:Tyes1010
ASP232721:2:Tyes25710564260
ASP62928:0:Tyes1010
ASP62977:0:Tyes65665510
ASP76114:2:Tyes2989298829890
BABO262698:0:Tno101-
BAMB339670:2:Tno-10-
BAMB339670:3:Tno0--36
BAMB398577:1:Tno01--
BAMB398577:2:Tno--0-
BAMB398577:3:Tno---0
BANT260799:0:Tno---0
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