CANDIDATE ID: 311

CANDIDATE ID: 311

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9958750e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7806 (tatA) (b3836)
   Products of gene:
     - TATA (TatA)
     - TATABCE-CPLX (TatABCE protein export complex)
       Reactions:
        a polypeptide[cytosol]  ->  a polypeptide[periplasmic space]

- EG11476 (ubiB) (b3835)
   Products of gene:
     - 2-OCTAPRENYLPHENOL-HYDROX-MONOMER (2-octaprenylphenol hydroxylase)
       Reactions:
        2-octaprenylphenol + oxygen + 2 H+  ->  2-octaprenyl-6-hydroxyphenol + H2O
         In pathways
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))

- EG11474 (yigP) (b3834)
   Products of gene:
     - EG11474-MONOMER (conserved protein)

- EG11473 (ubiE) (b3833)
   Products of gene:
     - 2-OCTAPRENYL-METHOXY-BENZOQ-METH-MONOMER (bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase and S-adenosylmethionine:2-DMK methyltransferase)
       Reactions:
        demethylmenaquinol-8 + S-adenosyl-L-methionine  ->  menaquinol-8 + S-adenosyl-L-homocysteine + H+
         In pathways
         PWY-5838 (superpathway of menaquinone-8 biosynthesis I)
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         MENAQUINONESYN-PWY (menaquinone-8 biosynthesis)
        2-octaprenyl-6-methoxy-1,4-benzoquinol + S-adenosyl-L-methionine  ->  2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol + S-adenosyl-L-homocysteine + H+
         In pathways
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         PWY-5870 (PWY-5870)
         UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 158
Effective number of orgs (counting one per cluster within 468 clusters): 101

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A3
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110183
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103313
XCAM487884 Xanthomonas campestris pv. paulliniae3
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-103
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80043
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339133
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3063
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VEIS391735 ncbi Verminephrobacter eiseniae EF01-23
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TTUR377629 ncbi Teredinibacter turnerae T79013
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252593
TCRU317025 ncbi Thiomicrospira crunogena XCL-23
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
SSP94122 ncbi Shewanella sp. ANA-34
SSON300269 ncbi Shigella sonnei Ss0464
SSED425104 ncbi Shewanella sediminis HAW-EB34
SPRO399741 ncbi Serratia proteamaculans 5684
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-14
SLOI323850 ncbi Shewanella loihica PV-44
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SDEN318161 ncbi Shewanella denitrificans OS2174
SDEG203122 ncbi Saccharophagus degradans 2-404
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
RSOL267608 ncbi Ralstonia solanacearum GMI10003
RMET266264 ncbi Ralstonia metallidurans CH343
REUT381666 ncbi Ralstonia eutropha H163
REUT264198 ncbi Ralstonia eutropha JMP1343
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-13
PSP296591 ncbi Polaromonas sp. JS6663
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24403
PPRO298386 ncbi Photobacterium profundum SS94
PNAP365044 ncbi Polaromonas naphthalenivorans CJ23
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PMEN399739 ncbi Pseudomonas mendocina ymp4
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 374
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PARC259536 ncbi Psychrobacter arcticus 273-43
PAER208964 ncbi Pseudomonas aeruginosa PAO13
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA143
NOCE323261 ncbi Nitrosococcus oceani ATCC 197074
NMUL323848 ncbi Nitrosospira multiformis ATCC 251964
NEUT335283 ncbi Nitrosomonas eutropha C913
NEUR228410 ncbi Nitrosomonas europaea ATCC 197183
MSP400668 ncbi Marinomonas sp. MWYL13
MPET420662 ncbi Methylibium petroleiphilum PM13
MFLA265072 ncbi Methylobacillus flagellatus KT3
MCAP243233 ncbi Methylococcus capsulatus Bath3
MAQU351348 ncbi Marinobacter aquaeolei VT83
LPNE400673 ncbi Legionella pneumophila Corby3
LPNE297246 ncbi Legionella pneumophila Paris3
LPNE297245 ncbi Legionella pneumophila Lens3
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 13
LCHO395495 ncbi Leptothrix cholodnii SP-63
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP375286 ncbi Janthinobacterium sp. Marseille3
ILOI283942 ncbi Idiomarina loihiensis L2TR4
HSOM228400 ncbi Haemophilus somnus 23364
HSOM205914 ncbi Haemophilus somnus 129PT4
HHAL349124 ncbi Halorhodospira halophila SL14
HDUC233412 ncbi Haemophilus ducreyi 35000HP4
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HARS204773 ncbi Herminiimonas arsenicoxydans3
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DARO159087 ncbi Dechloromonas aromatica RCB3
CVIO243365 ncbi Chromobacterium violaceum ATCC 124723
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CPSY167879 ncbi Colwellia psychrerythraea 34H4
CJAP155077 Cellvibrio japonicus4
BVIE269482 ncbi Burkholderia vietnamiensis G43
BTHA271848 ncbi Burkholderia thailandensis E2643
BSP36773 Burkholderia sp.3
BPSE320373 ncbi Burkholderia pseudomallei 6683
BPSE320372 ncbi Burkholderia pseudomallei 1710b3
BPSE272560 ncbi Burkholderia pseudomallei K962433
BPET94624 Bordetella petrii3
BPER257313 ncbi Bordetella pertussis Tohama I3
BPAR257311 ncbi Bordetella parapertussis 128223
BMAL320389 ncbi Burkholderia mallei NCTC 102473
BMAL320388 ncbi Burkholderia mallei SAVP13
BMAL243160 ncbi Burkholderia mallei ATCC 233443
BCEN331272 ncbi Burkholderia cenocepacia HI24243
BCEN331271 ncbi Burkholderia cenocepacia AU 10543
BBRO257310 ncbi Bordetella bronchiseptica RB503
BAMB398577 ncbi Burkholderia ambifaria MC40-63
BAMB339670 ncbi Burkholderia ambifaria AMMD3
ASP76114 ncbi Aromatoleum aromaticum EbN13
ASP62977 ncbi Acinetobacter sp. ADP13
ASP62928 ncbi Azoarcus sp. BH723
ASP232721 ncbi Acidovorax sp. JS423
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AHYD196024 Aeromonas hydrophila dhakensis4
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232703
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ABOR393595 ncbi Alcanivorax borkumensis SK23
ABAU360910 ncbi Bordetella avium 197N3
AAVE397945 ncbi Acidovorax citrulli AAC00-13


Names of the homologs of the genes in the group in each of these orgs
  G7806   EG11476   EG11474   EG11473   
YPSE349747 YPSIP31758_0274YPSIP31758_0273YPSIP31758_0272YPSIP31758_0271
YPSE273123 YPTB0258YPTB0257YPTB0256YPTB0255
YPES386656 YPDSF_3395YPDSF_3396YPDSF_3397YPDSF_3398
YPES377628 YPN_0186YPN_0185YPN_0184YPN_0183
YPES360102 YPA_0246YPA_0245YPA_0244YPA_0243
YPES349746 YPANGOLA_A3638YPANGOLA_A3639YPANGOLA_A3640YPANGOLA_A3641
YPES214092 YPO3778YPO3779YPO3780YPO3781
YPES187410 Y0452Y0451Y0450Y0449
YENT393305 YE0259YE0258YE0257YE0256
XORY360094 XOOORF_0381XOOORF_5038XOOORF_0909
XORY342109 XOO4152XOO0322XOO3758
XORY291331 XOO4408XOO0350XOO3987
XCAM487884 XCC-B100_4297XCC-B100_0246XCC-B100_0709
XCAM316273 XCAORF_0153XCAORF_4299XCAORF_3822
XCAM314565 XC_4184XC_0234XC_0673
XCAM190485 XCC4093XCC0224XCC3488
XAXO190486 XAC4218XAC0242XAC0643
VVUL216895 VV1_0906VV1_0907VV1_0908VV1_0909
VVUL196600 VV0180VV0179VV0178VV0177
VPAR223926 VP0098VP0097VP0096VP0095
VFIS312309 VF0049VF0048VF0047VF0046
VEIS391735 VEIS_0701VEIS_1321VEIS_1318
VCHO345073 VC0395_A2429VC0395_A2430VC0395_A2431VC0395_A2432
VCHO VC0086VC0085VC0084VC0083
TTUR377629 TERTU_3196TERTU_3597TERTU_3595
TDEN292415 TBD_1704TBD_0213TBD_0215
TCRU317025 TCR_1972TCR_0400TCR_0402
STYP99287 STM3973STM3972STM3971STM3970
SSP94122 SHEWANA3_3728SHEWANA3_3727SHEWANA3_3726SHEWANA3_3725
SSON300269 SSO_4011SSO_4010SSO_4009SSO_4008
SSED425104 SSED_4099SSED_4098SSED_4097SSED_4096
SPRO399741 SPRO_0251SPRO_0250SPRO_0249SPRO_0248
SPEA398579 SPEA_3795SPEA_3794SPEA_3793SPEA_3792
SONE211586 SO_4202SO_4201SO_4200SO_4199
SLOI323850 SHEW_3376SHEW_3375SHEW_3374SHEW_3373
SHIGELLA S3840YIGRYIGPUBIE
SHAL458817 SHAL_3882SHAL_3881SHAL_3880SHAL_3879
SGLO343509 SG0112SG0111SG0110SG0109
SFLE373384 SFV_3662SFV_3663SFV_3664SFV_3665
SFLE198214 AAN45349.1AAN45348.1AAN45347.1AAN45346.1
SENT454169 SEHA_C4300SEHA_C4299SEHA_C4298SEHA_C4297
SENT321314 SCH_3871SCH_3870SCH_3869SCH_3868
SENT295319 SPA3814SPA3813SPA3812SPA3811
SENT220341 STY3586STY3587STY3588STY3589
SENT209261 T3324T3325T3326T3327
SDYS300267 SDY_3907SDY_3908SDY_3909SDY_3910
SDEN318161 SDEN_0458SDEN_0459SDEN_0460SDEN_0461
SDEG203122 SDE_3224SDE_2702SDE_2701SDE_2700
SBOY300268 SBO_3850SBO_3849SBO_3848SBO_3847
SBAL402882 SHEW185_0416SHEW185_0417SHEW185_0418SHEW185_0419
SBAL399599 SBAL195_0428SBAL195_0429SBAL195_0430SBAL195_0431
RSOL267608 RSC2942RSC0461RSC0458
RMET266264 RMET_3237RMET_0374RMET_0371
REUT381666 H16_A3405H16_A0448H16_A0445
REUT264198 REUT_A3100REUT_A0434REUT_A0431
PSYR223283 PSPTO_5155PSPTO_5152PSPTO_5151PSPTO_5150
PSYR205918 PSYR_0384PSYR_0387PSYR_0388PSYR_0389
PSTU379731 PST_0335PST_0338PST_0339PST_0340
PSP312153 PNUC_0116PNUC_1894PNUC_1897
PSP296591 BPRO_0814BPRO_0863BPRO_0860
PPUT76869 PPUTGB1_1038PPUTGB1_5063PPUTGB1_5062PPUTGB1_5061
PPUT351746 PPUT_1082PPUT_4887PPUT_4886PPUT_4885
PPUT160488 PP_1041PP_5012PP_5011
PPRO298386 PBPRA0119PBPRA0118PBPRA0117PBPRA0116
PNAP365044 PNAP_0706PNAP_0784PNAP_0781
PMUL272843 PM1689PM1688PM1687PM1686
PMEN399739 PMEN_0518PMEN_0521PMEN_0522PMEN_0523
PLUM243265 PLU4410PLU4411PLU4412PLU4413
PING357804 PING_0320PING_0321PING_0322PING_0323
PHAL326442 PSHAA2929PSHAA2928PSHAA2927PSHAA2926
PFLU220664 PFL_0422PFL_0425PFL_0426PFL_0427
PFLU216595 PFLU0384PFLU0387PFLU0388PFLU0389
PFLU205922 PFL_0382PFL_0385PFL_0386PFL_0387
PENT384676 PSEEN5078PSEEN5075PSEEN5074PSEEN5073
PATL342610 PATL_4213PATL_4211PATL_4210PATL_4209
PARC259536 PSYC_2000PSYC_0711PSYC_0713
PAER208964 PA5068PA5065PA5063
PAER208963 PA14_66960PA14_66920PA14_66900
NOCE323261 NOC_3058NOC_2345NOC_2344NOC_2343
NMUL323848 NMUL_A0810NMUL_A0988NMUL_A0989NMUL_A2269
NEUT335283 NEUT_1913NEUT_1164NEUT_1436
NEUR228410 NE0639NE1869NE1146
MSP400668 MMWYL1_0743MMWYL1_0745MMWYL1_0746
MPET420662 MPE_A0841MPE_A1067MPE_A2735
MFLA265072 MFLA_0258MFLA_0696MFLA_0698
MCAP243233 MCA_1488MCA_2019MCA_2017
MAQU351348 MAQU_3420MAQU_3417MAQU_3415
LPNE400673 LPC_3206LPC_3204LPC_3203
LPNE297246 LPP2972LPP2971LPP2970
LPNE297245 LPL2820LPL2819LPL2818
LPNE272624 LPG2905LPG2904LPG2903
LCHO395495 LCHO_1608LCHO_4010LCHO_3512
KPNE272620 GKPORF_B5083GKPORF_B3683GKPORF_B3682GKPORF_B3681
JSP375286 MMA_3279MMA_3108MMA_3111
ILOI283942 IL2370IL2371IL2372IL2373
HSOM228400 HSM_1658HSM_1657HSM_1656HSM_1655
HSOM205914 HS_0545HS_0544HS_0543HS_0542
HHAL349124 HHAL_1089HHAL_1207HHAL_1206HHAL_1205
HDUC233412 HD_0716HD_0717HD_0718HD_0719
HCHE349521 HCH_01076HCH_01080HCH_01081HCH_01082
HARS204773 HEAR3060HEAR2853HEAR2856
ESP42895 ENT638_3957ENT638_3958ENT638_3959ENT638_3960
EFER585054 EFER_3644EFER_3645EFER_3646EFER_3647
ECOO157 TATAYIGRYIGPUBIE
ECOL83334 ECS4766ECS4765ECS4764ECS4763
ECOL585397 ECED1_4540ECED1_4539ECED1_4538ECED1_4537
ECOL585057 ECIAI39_3159ECIAI39_3160ECIAI39_3161ECIAI39_3162
ECOL585056 ECUMN_4362ECUMN_4361ECUMN_4360ECUMN_4359
ECOL585055 EC55989_4313EC55989_4312EC55989_4311EC55989_4310
ECOL585035 ECS88_4286ECS88_4285ECS88_4284ECS88_4283
ECOL585034 ECIAI1_4031ECIAI1_4030ECIAI1_4029ECIAI1_4028
ECOL481805 ECOLC_4172ECOLC_4173ECOLC_4174ECOLC_4175
ECOL469008 ECBD_4187ECBD_4188ECBD_4189ECBD_4190
ECOL439855 ECSMS35_4219ECSMS35_4218ECSMS35_4217ECSMS35_4216
ECOL413997 ECB_03729ECB_03728ECB_03727ECB_03726
ECOL409438 ECSE_4124ECSE_4123ECSE_4122ECSE_4121
ECOL405955 APECO1_2619APECO1_2620APECO1_2621APECO1_2622
ECOL364106 UTI89_C4423UTI89_C4422UTI89_C4421UTI89_C4420
ECOL362663 ECP_4051ECP_4050ECP_4049ECP_4048
ECOL331111 ECE24377A_4357ECE24377A_4356ECE24377A_4355ECE24377A_4354
ECOL316407 ECK3830:JW3813:B3836ECK3829:JW3812:B3835ECK3828:JW3811:B3834ECK3827:JW5581:B3833
ECOL199310 C4785C4784C4783C4782
ECAR218491 ECA0199ECA0198ECA0197ECA0196
DARO159087 DARO_3375DARO_3869DARO_4117
CVIO243365 CV_0623CV_0991CV_0989
CSAL290398 CSAL_0593CSAL_0595CSAL_0596CSAL_0597
CPSY167879 CPS_0163CPS_0296CPS_0295CPS_0294
CJAP155077 CJA_0743CJA_3645CJA_3644CJA_3643
BVIE269482 BCEP1808_0415BCEP1808_2835BCEP1808_2838
BTHA271848 BTH_I2982BTH_I0556BTH_I0553
BSP36773 BCEP18194_A3534BCEP18194_A6056BCEP18194_A6059
BPSE320373 BURPS668_3655BURPS668_0670BURPS668_0667
BPSE320372 BURPS1710B_A3980BURPS1710B_A0897BURPS1710B_A0894
BPSE272560 BPSL3128BPSL0640BPSL0637
BPET94624 BPET0129BPET0484BPET0482
BPER257313 BP3777BP0164BP0161
BPAR257311 BPP4276BPP3992BPP3995
BMAL320389 BMA10247_2754BMA10247_2401BMA10247_2398
BMAL320388 BMASAVP1_A3250BMASAVP1_A2757BMASAVP1_A2760
BMAL243160 BMA_2703BMA_0189BMA_0186
BCEN331272 BCEN2424_0436BCEN2424_2729BCEN2424_2732
BCEN331271 BCEN_2671BCEN_2117BCEN_2120
BBRO257310 BB4863BB4465BB4468
BAMB398577 BAMMC406_0363BAMMC406_2647BAMMC406_2650
BAMB339670 BAMB_0354BAMB_2780BAMB_2783
ASP76114 EBB38EBA3613EBA3016
ASP62977 ACIAD0523ACIAD0382ACIAD0384
ASP62928 AZO3340AZO0377AZO0162
ASP232721 AJS_0781AJS_0870AJS_0867
ASAL382245 ASA_4306ASA_4307ASA_4308ASA_4309
APLE434271 APJL_2033APJL_2032APJL_2031APJL_2030
APLE416269 APL_1985APL_1984APL_1983APL_1982
AHYD196024 AHA_0087AHA_0086AHA_0085AHA_0084
AFER243159 AFE_0062AFE_2723AFE_2738
AEHR187272 MLG_2612MLG_0071MLG_0070MLG_0069
ABOR393595 ABO_2250ABO_2248ABO_2246
ABAU360910 BAV3323BAV3075BAV3089
AAVE397945 AAVE_1053AAVE_3641AAVE_3644


Organism features enriched in list (features available for 151 out of the 158 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00065091292
Arrangment:Pairs 0.009757138112
Arrangment:Singles 0.008973985286
Disease:Bubonic_plague 0.000280166
Disease:Dysentery 0.000280166
Disease:Gastroenteritis 0.00013251013
Disease:Legionnaire's_disease 0.004368444
Endospores:No 3.232e-730211
GC_Content_Range4:0-40 3.506e-239213
GC_Content_Range4:40-60 1.518e-989224
GC_Content_Range4:60-100 0.000359853145
GC_Content_Range7:30-40 4.887e-159166
GC_Content_Range7:50-60 1.214e-750107
GC_Content_Range7:60-70 0.000029753134
Genome_Size_Range5:0-2 6.164e-231155
Genome_Size_Range5:2-4 2.938e-629197
Genome_Size_Range5:4-6 1.710e-2398184
Genome_Size_Range5:6-10 0.00023302347
Genome_Size_Range9:1-2 3.717e-181128
Genome_Size_Range9:2-3 0.000042015120
Genome_Size_Range9:4-5 5.337e-84796
Genome_Size_Range9:5-6 2.268e-125188
Genome_Size_Range9:6-8 0.00001182238
Gram_Stain:Gram_Neg 2.100e-28140333
Motility:No 2.173e-1012151
Motility:Yes 4.385e-15110267
Optimal_temp.:- 0.004671579257
Oxygen_Req:Anaerobic 2.305e-113102
Oxygen_Req:Facultative 8.747e-981201
Pathogenic_in:No 0.000048339226
Pathogenic_in:Plant 0.0039470915
Shape:Coccus 1.541e-8382
Shape:Rod 1.374e-14128347
Shape:Spiral 0.0020976234
Temp._range:Mesophilic 0.0034505133473
Temp._range:Psychrophilic 0.001424879
Temp._range:Thermophilic 0.0002536135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 319
Effective number of orgs (counting one per cluster within 468 clusters): 246

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WSUC273121 ncbi Wolinella succinogenes DSM 17401
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB41
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.1
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332231
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX1
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen1
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE292459 ncbi Symbiobacterium thermophilum IAM 148631
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81021
SSP64471 ncbi Synechococcus sp. CC93111
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP1148 ncbi Synechocystis sp. PCC 68031
SSP1131 Synechococcus sp. CC96051
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SGOR29390 Streptococcus gordonii Challis0
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122281
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SCO ncbi Streptomyces coelicolor A3(2)1
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SARE391037 ncbi Salinispora arenicola CNS-2051
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI56780 ncbi Syntrophus aciditrophicus SB1
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RALB246199 Ruminococcus albus 80
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI1
PRUM264731 ncbi Prevotella ruminicola 231
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96011
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE50
NSP387092 ncbi Nitratiruptor sp. SB155-20
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
NFAR247156 ncbi Nocardia farcinica IFM 101521
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E1
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A1
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LMON265669 ncbi Listeria monocytogenes 4b F23651
LMON169963 ncbi Listeria monocytogenes EGD-e1
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LINN272626 ncbi Listeria innocua Clip112621
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HINF71421 ncbi Haemophilus influenzae Rd KW201
HINF374930 ncbi Haemophilus influenzae PittEE1
HINF281310 ncbi Haemophilus influenzae 86-028NP1
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba1
GOXY290633 ncbi Gluconobacter oxydans 621H1
GBET391165 ncbi Granulibacter bethesdensis CGDNIH11
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI31
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
FALN326424 ncbi Frankia alni ACN14a1
EFAE226185 ncbi Enterococcus faecalis V5830
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough1
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRED349161 ncbi Desulfotomaculum reducens MI-11
DRAD243230 ncbi Deinococcus radiodurans R11
DPSY177439 ncbi Desulfotalea psychrophila LSv541
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G201
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1011
CPER195103 ncbi Clostridium perfringens ATCC 131241
CPER195102 ncbi Clostridium perfringens 131
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4111
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CDIF272563 ncbi Clostridium difficile 6301
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto1
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6571
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CBOT498213 ncbi Clostridium botulinum B1 str. Okra1
CBOT441772 ncbi Clostridium botulinum F str. Langeland1
CBOT441771 ncbi Clostridium botulinum A str. Hall1
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193971
CBOT36826 Clostridium botulinum A1
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80521
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4001
BWEI315730 ncbi Bacillus weihenstephanensis KBAB41
BTUR314724 ncbi Borrelia turicatae 91E1350
BTHU412694 ncbi Bacillus thuringiensis Al Hakam1
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-271
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BSUB ncbi Bacillus subtilis subtilis 1681
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BPUM315750 ncbi Bacillus pumilus SAFR-0321
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145801
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1021
BCER315749 ncbi Bacillus cytotoxicus NVH 391-981
BCER288681 ncbi Bacillus cereus E33L1
BCER226900 ncbi Bacillus cereus ATCC 145791
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02481
BANT568206 ncbi Bacillus anthracis CDC 6841
BANT261594 ncbi Bacillus anthracis Ames Ancestor1
BANT260799 ncbi Bacillus anthracis Sterne1
BAMY326423 ncbi Bacillus amyloliquefaciens FZB421
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG11
AMET293826 ncbi Alkaliphilus metalliredigens QYMF1
AMAR329726 ncbi Acaryochloris marina MBIC110171
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C1
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
ABUT367737 ncbi Arcobacter butzleri RM40180
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3451
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G7806   EG11476   EG11474   EG11473   
WSUC273121 WS1220
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496 TW0058
TWHI203267 TW053
TVOL273116
TTHE300852 TTHA1854
TTHE262724 TT_C1503
TTEN273068 TTE1190
TSP28240
TSP1755 TETH514_1464
TPSE340099 TETH39_1025
TPET390874
TPEN368408
TPAL243276
TMAR243274
TLET416591
TKOD69014
TFUS269800 TFU_2697
TERY203124 TERY_3425
TDEN326298
TDEN243275
TACI273075
SWOL335541 SWOL_0342
STRO369723 STROP_4067
STOK273063
STHE322159 STER_1047
STHE299768 STR1062
STHE292459 STH2515
STHE264199 STU1062
SSUI391296
SSUI391295
SSP84588 SYNW2524OR1109
SSP64471 GSYN3114
SSP387093
SSP1148 SLL0095
SSP1131 SYNCC9605_2693
SSOL273057
SSAP342451 SSP1275
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SHAE279808 SH1443
SGOR29390
SERY405948 SACE_6904
SEPI176280 SE_1158
SEPI176279 SERP1039
SCO SCO4556
SAVE227882 SAV4831
SAUR93062 SACOL1511
SAUR93061 SAOUHSC_01487
SAUR426430 NWMN_1380
SAUR418127 SAHV_1459
SAUR367830 SAUSA300_1360
SAUR359787 SAURJH1_1558
SAUR359786 SAURJH9_1528
SAUR282459 SAS1412
SAUR282458 SAR1480
SAUR273036 SAB1333C
SAUR196620 MW1360
SAUR158879 SA1303
SAUR158878 SAV1471
SARE391037 SARE_4465
SAGA211110
SAGA208435
SAGA205921
SACI56780 SYN_00297
SACI330779
RSAL288705 RSAL33209_2638
RALB246199
PTOR263820
PTHE370438 PTH_1439
PRUM264731 GFRORF0722
PPEN278197
PMOB403833
PMAR74547 PMT2272
PMAR74546 PMT9312_1806
PMAR59920 PMN2A_1325
PMAR167555 NATL1_21981
PMAR167546 P9301ORF_1946
PMAR167542
PMAR167540 PMM1714
PMAR167539 PRO_1883
PMAR146891 A9601_19231
PLUT319225
PISL384616
PINT246198 PIN_A1773
PHOR70601
PGIN242619 PG_0977
PFUR186497
PDIS435591 BDI_1988
PAST100379
PARS340102
PAER178306
PACN267747 PPA1943
PABY272844
NSP387092
NPHA348780 NP1742A
NFAR247156 NFA51290
MVAN350058 MVAN_0983
MTUB419947 MRA_0565
MTUB336982 TBFG_10568
MTHE349307
MTHE187420 MTH1645
MTBRV RV0558
MTBCDC MT0584
MSYN262723
MSUC221988 MS0500
MSTA339860 MSP_1282
MSP189918 MKMS_0777
MSP164757 MJLS_0757
MSP164756 MMCS_0763
MSME246196 MSMEG_1115
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407 MEMAR_1843
MMAR267377
MLEP272631 ML2273
MLAB410358 MLAB_0176
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054 MFLV_5258
MGEN243273
MFLO265311
MCAP340047
MBUR259564 MBUR_1648
MBOV410289 BCG_0603
MBOV233413 MB0573
MBAR269797 MBAR_A2578
MAVI243243 MAV_4584
MART243272
MAEO419665
MACE188937 MA1861
MABS561007 MAB_3930C
LXYL281090 LXX01820
LWEL386043 LWE1957
LSAK314315
LREU557436 LREU_1080
LPLA220668 LP_3431
LMON265669 LMOF2365_1960
LMON169963 LMO1931
LMES203120 LEUM_2020
LLAC272623
LLAC272622 LACR_1836
LJOH257314 LJ_0053
LINT363253
LINT267671 LIC_20171
LINT189518 LB215
LINN272626 LIN2045
LHEL405566
LGAS324831 LGAS_0051
LDEL390333
LDEL321956
LCAS321967
LBRE387344 LVIS_1920
LBOR355277 LBJ_4143
LBOR355276 LBL_4158
LBIF456481
LBIF355278
LACI272621
IHOS453591
HWAL362976
HSP64091 VNG1770C
HSAL478009 OE3490R
HPYL85963 JHP0303
HPYL357544 HPAG1_0323
HPY HP0320
HMUK485914
HMAR272569
HINF71421 HI_0187
HINF374930 CGSHIEE_02325
HINF281310 NTHI0279
HHEP235279
HBUT415426
HACI382638 HAC_1001
GOXY290633 GOX2499
GBET391165 GBCGDNIH1_0158
FSUC59374
FSP1855 FRANEAN1_6097
FSP106370 FRANCCI3_0535
FNUC190304
FNOD381764
FMAG334413
FJOH376686 FJOH_1467
FALN326424 FRAAL1028
EFAE226185
DVUL882 DVU_3174
DSP255470
DSP216389
DRED349161 DRED_2198
DRAD243230 DR_2405
DPSY177439 DP1332
DGEO319795 DGEO_0058
DETH243164
DDES207559 DDE_3185
CTRA471473
CTRA471472
CTET212717
CTEP194439 CT_0462
CSUL444179
CPRO264201 PC1060
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPER289380 CPR_2537
CPER195103 CPF_2852
CPER195102 CPE2528
CNOV386415
CMUR243161
CMIC443906 CMM_2808
CMIC31964 CMS3012
CMET456442 MBOO_2205
CMAQ397948
CKOR374847
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537 JK1865
CHUT269798 CHU_2710
CHOM360107
CGLU196627 CG0556
CFET360106
CFEL264202
CEFF196164 CE0481
CDIP257309 DIP0426
CDIF272563 CD2747
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBOT536232 CLM_0029
CBOT515621 CLJ_B0028
CBOT508765 CLL_A0101
CBOT498213 CLD_0793
CBOT441772 CLI_0039
CBOT441771 CLC_0043
CBOT441770 CLB_0035
CBOT36826 CBO0026
CBEI290402 CBEI_2963
CACE272562 CAC0033
CABO218497
BXEN266265 BXE_B1986
BWEI315730 BCERKBAB4_1437
BTUR314724
BTHU412694 BALH_1367
BTHU281309 BT9727_1395
BTHE226186 BT_4216
BSUB BSU22750
BSP107806
BPUM315750 BPUM_2006
BLON206672
BLIC279010 BL02783
BHER314723
BGAR290434
BFRA295405 BF0917
BFRA272559 BF0839
BCIC186490
BCER572264 BCA_1572
BCER315749 BCER98_1236
BCER288681 BCE33L1395
BCER226900 BC_1513
BBUR224326
BAPH372461
BAPH198804
BANT592021 BAA_1603
BANT568206 BAMEG_3059
BANT261594 GBAA1534
BANT260799 BAS1423
BAMY326423 RBAM_020910
BAFZ390236
AYEL322098
AURANTIMONAS
ASP1667 ARTH_3132
APER272557
AORE350688
ANAE240017 ANA_1626
AMET293826 AMET_2350
AMAR329726 AM1_5607
ALAI441768
AFUL224325
ADEH290397 ADEH_1699
ACEL351607 ACEL_0265
ABUT367737
ABAC204669 ACID345_2248
AAEO224324


Organism features enriched in list (features available for 301 out of the 319 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 3.229e-87192
Arrangment:Clusters 0.00017681617
Disease:Food_poisoning 0.002458199
Disease:Gastroenteritis 0.0066006213
Disease:Pharyngitis 0.004823888
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00063501111
Disease:Wide_range_of_infections 0.00063501111
Disease:bronchitis_and_pneumonitis 0.004823888
Disease:meningitis 0.009450877
Endospores:No 9.761e-21162211
Endospores:Yes 0.00001064253
GC_Content_Range4:0-40 1.073e-23167213
GC_Content_Range4:40-60 4.397e-787224
GC_Content_Range4:60-100 1.466e-846145
GC_Content_Range7:0-30 2.776e-63947
GC_Content_Range7:30-40 1.796e-15128166
GC_Content_Range7:50-60 1.531e-1026107
GC_Content_Range7:60-70 1.008e-1037134
Genome_Size_Range5:0-2 6.670e-14119155
Genome_Size_Range5:2-4 0.0002280121197
Genome_Size_Range5:4-6 1.683e-1748184
Genome_Size_Range5:6-10 0.00031971347
Genome_Size_Range9:0-1 0.00018242327
Genome_Size_Range9:1-2 7.243e-1096128
Genome_Size_Range9:2-3 6.454e-683120
Genome_Size_Range9:4-5 1.840e-82596
Genome_Size_Range9:5-6 9.670e-82388
Genome_Size_Range9:6-8 0.0000537838
Gram_Stain:Gram_Neg 2.730e-4293333
Gram_Stain:Gram_Pos 8.676e-32136150
Motility:No 5.444e-17121151
Motility:Yes 5.023e-8106267
Optimal_temp.:- 3.208e-6106257
Optimal_temp.:25-30 0.0000159119
Optimal_temp.:30-37 5.274e-61818
Optimal_temp.:35-37 0.0066006213
Optimal_temp.:37 0.000080772106
Oxygen_Req:Aerobic 9.912e-769185
Oxygen_Req:Anaerobic 3.758e-1486102
Salinity:Non-halophilic 0.002627667106
Shape:Coccobacillus 0.0037258111
Shape:Coccus 2.130e-86582
Shape:Irregular_coccus 0.00001051717
Shape:Rod 5.896e-16132347
Shape:Sphere 0.00044541719
Shape:Spiral 3.624e-63034
Temp._range:Hyperthermophilic 3.797e-62223



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
AST-PWY (arginine degradation II (AST pathway))1201030.6789
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181410.6630
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951280.6249
GLYCOCAT-PWY (glycogen degradation I)2461450.6235
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001550.5827
PWY-5918 (heme biosynthesis I)2721470.5803
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81710.5535
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251290.5525
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761120.5520
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861470.5513
PWY-1269 (CMP-KDO biosynthesis I)3251560.5434
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911160.5406
PWY-5386 (methylglyoxal degradation I)3051500.5362
PWY-4041 (γ-glutamyl cycle)2791430.5360
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149990.5294
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901440.5211
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911440.5191
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391560.5187
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961450.5166
TYRFUMCAT-PWY (tyrosine degradation I)1841100.5122
GALACTITOLCAT-PWY (galactitol degradation)73630.5103
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481560.5033
GLUCARDEG-PWY (D-glucarate degradation I)152970.5021
PWY0-981 (taurine degradation IV)106780.5019
PWY-5913 (TCA cycle variation IV)3011440.4995
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831080.4989
GLUCONSUPER-PWY (D-gluconate degradation)2291230.4968
PWY-5148 (acyl-CoA hydrolysis)2271220.4939
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491270.4809
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491270.4809
LIPASYN-PWY (phospholipases)2121150.4768
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911080.4766
PWY0-1182 (trehalose degradation II (trehalase))70580.4702
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94690.4655
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001390.4646
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135850.4546
PWY-6196 (serine racemization)102700.4400
PWY-6134 (tyrosine biosynthesis IV)89640.4368
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291420.4328
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981570.4306
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551220.4301
PWY-561 (superpathway of glyoxylate cycle)162920.4282
GALACTARDEG-PWY (D-galactarate degradation I)151880.4279
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135820.4277
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138830.4265
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96660.4256
GLYOXYLATE-BYPASS (glyoxylate cycle)169940.4243
PWY-3162 (tryptophan degradation V (side chain pathway))94650.4243
P601-PWY (D-camphor degradation)95650.4198
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)2121070.4145
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50430.4117
DAPLYSINESYN-PWY (lysine biosynthesis I)3421420.4097
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651470.4077
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91620.4066
GLYCOLATEMET-PWY (glycolate and glyoxylate degradation I)2701230.4059
P344-PWY (acrylonitrile degradation)2101050.4038
PWY-6087 (4-chlorocatechol degradation)2231090.4036
PWY0-901 (selenocysteine biosynthesis I (bacteria))2301110.4027



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11476   EG11474   EG11473   
G78060.99950.9994530.999366
EG114760.9996490.999919
EG114740.999638
EG11473



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PAIRWISE BLAST SCORES:

  G7806   EG11476   EG11474   EG11473   
G78060.0f0---
EG11476-0.0f0--
EG11474--0.0f0-
EG11473---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ALL-CHORISMATE-PWY (superpathway of chorismate) (degree of match pw to cand: 0.035, degree of match cand to pw: 0.500, average score: 0.580)
  Genes in pathway or complex:
             0.0169 0.0014 EG10799 (purN) GART-MONOMER (phosphoribosylglycinamide formyltransferase 1)
             0.7341 0.4393 EG11375 (folE) GTP-CYCLOHYDRO-I-MONOMER (GTP cyclohydrolase I monomer)
             0.6013 0.1475 EG11138 (nudB) H2NEOPTERINP3PYROPHOSPHOHYDRO-MONOMER (dihydroneopterin triphosphate pyrophosphohydrolase)
             0.7563 0.6655 EG11673 (folB) H2NEOPTERINALDOL-MONOMER (FolB)
             0.4614 0.0814 EG11374 (folK) H2PTERIDINEPYROPHOSPHOKIN-MONOMER (6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase)
             0.7864 0.6494 G6862 (folM) G6862-MONOMER (dihydromonapterin reductase / dihydrofolate reductase)
             0.6768 0.5002 EG10326 (folA) DIHYDROFOLATEREDUCT-MONOMER (dihydrofolate reductase)
             0.4334 0.0269 EG10327 (folC) FOLC-MONOMER (bifunctional folypolyglutamate synthetase / dihydrofolate synthetase)
             0.1998 0.0287 EG10328 (folD) FOLD-MONOMER (FolD)
             0.8246 0.7096 EG10682 (pabA) PABASYN-COMPII-MONOMER (PabA)
             0.0197 0.0028 EG10683 (pabB) PABASYN-COMPI-MONOMER (PabB)
             0.4502 0.1204 EG50011 (folP) H2PTEROATESYNTH-MONOMER (FolP)
             0.0271 0.0035 EG11493 (pabC) ADCLY-MONOMER (pabC)
             0.9850 0.9835 EG11369 (ubiC) CHORPYRLY-MONOMER (chorismate lyase)
             0.9921 0.9892 EG11370 (ubiA) 4OHBENZOATE-OCTAPRENYLTRANSFER-MONOMER (4-hydroxybenzoate octaprenyltransferase)
             0.7331 0.3492 EG11044 (ubiX) UBIX-MONOMER (3-octaprenyl-4-hydroxybenzoate decarboxylase together with UbiG)
             0.9974 0.9960 EG11396 (ubiD) EG11396-MONOMER (3-octaprenyl-4-hydroxybenzoate carboxy-lyase monomer)
   *in cand* 0.9998 0.9995 EG11476 (ubiB) 2-OCTAPRENYLPHENOL-HYDROX-MONOMER (2-octaprenylphenol hydroxylase)
             0.3014 0.0258 EG11143 (ubiG) DHHB-METHYLTRANSFER-MONOMER (UbiG)
             0.9806 0.9631 EG11324 (ubiH) OCTAPRENYL-METHOXYPHENOL-OH-MONOMER (2-octaprenyl-6-methoxyphenol hydroxylase)
             0.8588 0.5544 G6365 (ubiF) OCTAPRENYL-METHYL-METHOXY-BENZOQ-OH-MON (2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone hydroxylase)
             0.5133 0.3731 EG11040 (tyrB) TYRB-MONOMER (TyrB)
             0.0832 0.0268 EG10096 (aspC) ASPAMINOTRANS-MONOMER (AspC)
             0.2789 0.0308 EG10707 (pheA) CHORISMUTPREPHENDEHYDRAT-MONOMER (PheA)
             0.2017 0.0717 EG11039 (tyrA) CHORISMUTPREPHENDEHYDROG-MONOMER (TyrA)
             0.9929 0.9908 EG10497 (ilvE) BRANCHED-CHAINAMINOTRANSFER-MONOMER (IlvE)
             0.1811 0.0021 EG11026 (trpC) PRAI-IGPS (indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase)
             0.1993 0.0006 EG11027 (trpD) ANTHRANSYNCOMPII-MONOMER (anthranilate synthase component II)
             0.3776 0.0278 EG11028 (trpE) ANTHRANSYNCOMPI-MONOMER (anthranilate synthase component I)
             0.4604 0.0377 EG11024 (trpA) TRYPSYN-APROTEIN (tryptophan synthase, α subunit)
             0.4698 0.0366 EG11025 (trpB) TRYPSYN-BPROTEIN (tryptophan synthase, β subunit)
             0.0430 0.0278 EG10075 (aroC) AROC-MONOMER (AroC)
             0.2998 0.0276 EG10073 (aroA) AROA-MONOMER (3-phosphoshikimate-1-carboxyvinyltransferase)
             0.9895 0.9832 EG10082 (aroL) AROL-MONOMER (shikimate kinase II)
             0.9901 0.9773 EG10081 (aroK) AROK-MONOMER (shikimate kinase I)
             0.9891 0.9841 EG10077 (aroE) AROE-MONOMER (shikimate dehydrogenase)
             0.2063 0.0702 EG10076 (aroD) AROD-MONOMER (AroD)
             0.9937 0.9873 EG10074 (aroB) AROB-MONOMER (3-dehydroquinate synthase)
             0.1537 0.0407 EG10079 (aroG) AROG-MONOMER (AroG)
             0.0644 0.0032 EG10080 (aroH) AROH-MONOMER (AroH)
             0.2273 0.0629 EG10078 (aroF) AROF-MONOMER (AroF)
             0.8689 0.7280 EG11234 (ydiB) EG11234-MONOMER (YdiB)
             0.7997 0.6044 EG10261 (entC) ENTC-MONOMER (isochorismate synthase 1)
             0.2250 0.0734 EG10259 (entA) ENTA-MONOMER (EntA)
             0.3523 0.1997 EG10263 (entE) ENTE-MONOMER (EntE)
             0.1966 0.0990 EG10264 (entF) ENTF-PANT (aryl carrier protein / serine activating enzyme)
             0.2011 0.1213 EG10262 (entD) ENTD-MONOMER (phosphopantetheinyl transferase)
             0.2981 0.1383 EG10260 (entB) ENTB-MONOMER (EntB)
             0.1388 0.0444 EG11110 (ybgC) EG11110-MONOMER (esterase/thioesterase)
             0.8239 0.6016 EG11368 (menB) NAPHTHOATE-SYN-MONOMER (MenB)
             0.5096 0.4098 EG12438 (menH) EG12438-MONOMER ((1R,6R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase)
             0.6612 0.3725 EG10579 (menD) MEND-MONOMER (MenD)
             0.7183 0.4624 EG12362 (menF) MENF-MONOMER (MenF)
             0.5861 0.3862 EG11532 (menC) O-SUCCINYLBENZOATE-COA-SYN-MONOMER (o-succinylbenzoate synthase)
             0.5086 0.2331 EG12437 (menE) O-SUCCINYLBENZOATE-COA-LIG-MONOMER (MenE)
             0.9873 0.9789 EG11880 (menA) DMK-MONOMER (1,4-dihydroxy-2-naphthoate octaprenyltransferase)
   *in cand* 0.9997 0.9994 EG11473 (ubiE) 2-OCTAPRENYL-METHOXY-BENZOQ-METH-MONOMER (bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase and S-adenosylmethionine:2-DMK methyltransferase)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9995 EG11474 (yigP) EG11474-MONOMER (conserved protein)
   *in cand* 0.9996 0.9994 G7806 (tatA) TATA (TatA)
   This pathway has holes

- UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic)) (degree of match pw to cand: 0.222, degree of match cand to pw: 0.500, average score: 0.803)
  Genes in pathway or complex:
             0.8588 0.5544 G6365 (ubiF) OCTAPRENYL-METHYL-METHOXY-BENZOQ-OH-MON (2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone hydroxylase)
   *in cand* 0.9997 0.9994 EG11473 (ubiE) 2-OCTAPRENYL-METHOXY-BENZOQ-METH-MONOMER (bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase and S-adenosylmethionine:2-DMK methyltransferase)
             0.9806 0.9631 EG11324 (ubiH) OCTAPRENYL-METHOXYPHENOL-OH-MONOMER (2-octaprenyl-6-methoxyphenol hydroxylase)
             0.3014 0.0258 EG11143 (ubiG) DHHB-METHYLTRANSFER-MONOMER (UbiG)
   *in cand* 0.9998 0.9995 EG11476 (ubiB) 2-OCTAPRENYLPHENOL-HYDROX-MONOMER (2-octaprenylphenol hydroxylase)
             0.9974 0.9960 EG11396 (ubiD) EG11396-MONOMER (3-octaprenyl-4-hydroxybenzoate carboxy-lyase monomer)
             0.7331 0.3492 EG11044 (ubiX) UBIX-MONOMER (3-octaprenyl-4-hydroxybenzoate decarboxylase together with UbiG)
             0.9921 0.9892 EG11370 (ubiA) 4OHBENZOATE-OCTAPRENYLTRANSFER-MONOMER (4-hydroxybenzoate octaprenyltransferase)
             0.9850 0.9835 EG11369 (ubiC) CHORPYRLY-MONOMER (chorismate lyase)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9995 EG11474 (yigP) EG11474-MONOMER (conserved protein)
   *in cand* 0.9996 0.9994 G7806 (tatA) TATA (TatA)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11473 EG11474 EG11476 G7806 (centered at EG11476)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7806   EG11476   EG11474   EG11473   
165/623350/623100/623416/623
AAUR290340:2:Tyes-0-258
AAVE397945:0:Tyes02540-2543
ABAC204669:0:Tyes---0
ABAU360910:0:Tyes2490-14
ABOR393595:0:Tyes42-0
ACAU438753:0:Tyes-0-1
ACEL351607:0:Tyes---0
ACRY349163:8:Tyes0--1712
ADEH290397:0:Tyes-0--
AEHR187272:0:Tyes2526210
AFER243159:0:Tyes02622-2637
AHYD196024:0:Tyes3210
AMAR234826:0:Tyes-0-443
AMAR329726:9:Tyes-0--
AMET293826:0:Tyes-0--
ANAE240017:0:Tyes---0
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ZMOB264203:0:Tyes-1-0



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