CANDIDATE ID: 314

CANDIDATE ID: 314

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9986350e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:   8.0000000e-89

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7233 (emrK) (b2368)
   Products of gene:
     - G7233-MONOMER (EmrK putative membrane fusion protein)
     - CPLX0-2161 (EmrKY-TolC putative multidrug efflux transport system)
       Reactions:
        multidrug[cytosol] + H+[periplasmic space]  ->  multidrug[extracellular space] + H+[cytosol]

- EG13283 (emrY) (b2367)
   Products of gene:
     - EMRY-MONOMER (EmrY putative multidrug MFS transporter)
     - CPLX0-2161 (EmrKY-TolC putative multidrug efflux transport system)
       Reactions:
        multidrug[cytosol] + H+[periplasmic space]  ->  multidrug[extracellular space] + H+[cytosol]

- EG11439 (emrB) (b2686)
   Products of gene:
     - EMRB-MONOMER (EmrB multidrug MFS transporter)
     - CPLX0-2121 (EmrAB-TolC multidrug efflux transport system)
       Reactions:
        multidrug[cytosol] + H+[periplasmic space]  ->  multidrug[extracellular space] + H+[cytosol]

- EG11354 (emrA) (b2685)
   Products of gene:
     - EG11354-MONOMER (EmrA Membrane Fusion Protein)
     - CPLX0-2121 (EmrAB-TolC multidrug efflux transport system)
       Reactions:
        multidrug[cytosol] + H+[periplasmic space]  ->  multidrug[extracellular space] + H+[cytosol]



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 201
Effective number of orgs (counting one per cluster within 468 clusters): 134

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM44
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A4
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110184
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103314
XCAM487884 Xanthomonas campestris pv. paulliniae4
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-104
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80044
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339134
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3064
XAUT78245 ncbi Xanthobacter autotrophicus Py24
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TTUR377629 ncbi Teredinibacter turnerae T79014
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
SSP94122 ncbi Shewanella sp. ANA-34
SSON300269 ncbi Shigella sonnei Ss0464
SSED425104 ncbi Shewanella sediminis HAW-EB34
SPRO399741 ncbi Serratia proteamaculans 5684
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-13
SMEL266834 ncbi Sinorhizobium meliloti 10214
SMED366394 ncbi Sinorhizobium medicae WSM4194
SLOI323850 ncbi Shewanella loihica PV-44
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB4
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
SALA317655 ncbi Sphingopyxis alaskensis RB22564
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170254
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170294
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.14
RSOL267608 ncbi Ralstonia solanacearum GMI10004
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111704
RPAL316058 ncbi Rhodopseudomonas palustris HaA24
RPAL316057 ncbi Rhodopseudomonas palustris BisB54
RPAL316056 ncbi Rhodopseudomonas palustris BisB184
RPAL316055 ncbi Rhodopseudomonas palustris BisA534
RPAL258594 ncbi Rhodopseudomonas palustris CGA0094
RMET266264 ncbi Ralstonia metallidurans CH344
RMAS416276 ncbi Rickettsia massiliae MTU54
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38414
RFER338969 ncbi Rhodoferax ferrireducens T1184
RFEL315456 ncbi Rickettsia felis URRWXCal24
REUT381666 ncbi Ralstonia eutropha H164
REUT264198 ncbi Ralstonia eutropha JMP1344
RETL347834 ncbi Rhizobium etli CFN 424
RCON272944 ncbi Rickettsia conorii Malish 74
RCAN293613 ncbi Rickettsia canadensis McKiel4
RAKA293614 ncbi Rickettsia akari Hartford4
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSP296591 ncbi Polaromonas sp. JS6664
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS94
PNAP365044 ncbi Polaromonas naphthalenivorans CJ24
PMEN399739 ncbi Pseudomonas mendocina ymp4
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
OCAR504832 ncbi Oligotropha carboxidovorans OM54
OANT439375 ncbi Ochrobactrum anthropi ATCC 491884
NMEN374833 ncbi Neisseria meningitidis 0534424
NMEN272831 ncbi Neisseria meningitidis FAM184
NMEN122587 ncbi Neisseria meningitidis Z24914
NMEN122586 ncbi Neisseria meningitidis MC584
NHAM323097 ncbi Nitrobacter hamburgensis X144
NGON242231 ncbi Neisseria gonorrhoeae FA 10904
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124444
MSP409 Methylobacterium sp.4
MSP400668 ncbi Marinomonas sp. MWYL14
MSP266779 ncbi Chelativorans sp. BNC14
MMAG342108 ncbi Magnetospirillum magneticum AMB-14
MLOT266835 ncbi Mesorhizobium loti MAFF3030994
MEXT419610 ncbi Methylobacterium extorquens PA14
MCAP243233 ncbi Methylococcus capsulatus Bath4
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP375286 ncbi Janthinobacterium sp. Marseille4
HINF71421 ncbi Haemophilus influenzae Rd KW204
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HARS204773 ncbi Herminiimonas arsenicoxydans4
GURA351605 ncbi Geobacter uraniireducens Rf44
GSUL243231 ncbi Geobacter sulfurreducens PCA4
GOXY290633 ncbi Gluconobacter oxydans 621H4
GMET269799 ncbi Geobacter metallireducens GS-154
GBET391165 ncbi Granulibacter bethesdensis CGDNIH14
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-004
FTUL418136 ncbi Francisella tularensis tularensis WY96-34184
FTUL401614 ncbi Francisella novicida U1124
FTUL393115 ncbi Francisella tularensis tularensis FSC1984
FTUL393011 ncbi Francisella tularensis holarctica OSU184
FTUL351581 Francisella tularensis holarctica FSC2004
FRANT ncbi Francisella tularensis tularensis SCHU S44
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250174
FJOH376686 ncbi Flavobacterium johnsoniae UW1014
ESP42895 Enterobacter sp.4
ELIT314225 ncbi Erythrobacter litoralis HTCC25944
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DPSY177439 ncbi Desulfotalea psychrophila LSv544
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CTEP194439 ncbi Chlorobium tepidum TLS3
CSP78 Caulobacter sp.4
CSP501479 Citreicella sp. SE454
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE254
CCHL340177 ncbi Chlorobium chlorochromatii CaD34
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1114
CBUR360115 ncbi Coxiella burnetii RSA 3314
CBUR227377 ncbi Coxiella burnetii RSA 4934
CAULO ncbi Caulobacter crescentus CB154
BXEN266265 ncbi Burkholderia xenovorans LB4004
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTRI382640 ncbi Bartonella tribocorum CIP 1054764
BTHA271848 ncbi Burkholderia thailandensis E2644
BSUI470137 ncbi Brucella suis ATCC 234454
BSUI204722 ncbi Brucella suis 13304
BSP376 Bradyrhizobium sp.4
BSP36773 Burkholderia sp.4
BQUI283165 ncbi Bartonella quintana Toulouse4
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii4
BPER257313 ncbi Bordetella pertussis Tohama I4
BOVI236 Brucella ovis4
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M4
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1104
BHEN283166 ncbi Bartonella henselae Houston-14
BFRA295405 ncbi Bacteroides fragilis YCH464
BFRA272559 ncbi Bacteroides fragilis NCTC 93434
BCIC186490 Candidatus Baumannia cicadellinicola4
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BCAN483179 ncbi Brucella canis ATCC 233654
BBRO257310 ncbi Bordetella bronchiseptica RB504
BBAC360095 ncbi Bartonella bacilliformis KC5834
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
ASP76114 ncbi Aromatoleum aromaticum EbN14
ASP62977 ncbi Acinetobacter sp. ADP14
ASP232721 ncbi Acidovorax sp. JS424
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
AHYD196024 Aeromonas hydrophila dhakensis4
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232704
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C4
ACRY349163 ncbi Acidiphilium cryptum JF-54
ACAU438753 ncbi Azorhizobium caulinodans ORS 5714
ABAU360910 ncbi Bordetella avium 197N4
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3453
AAVE397945 ncbi Acidovorax citrulli AAC00-13


Names of the homologs of the genes in the group in each of these orgs
  G7233   EG13283   EG11439   EG11354   
ZMOB264203 ZMO0965ZMO0966ZMO0966ZMO0965
YPSE349747 YPSIP31758_3201YPSIP31758_3202YPSIP31758_3202YPSIP31758_3201
YPSE273123 YPTB0856YPTB0855YPTB0855YPTB0856
YPES386656 YPDSF_2903YPDSF_2904YPDSF_2904YPDSF_2903
YPES377628 YPN_0829YPN_0828YPN_0828YPN_0829
YPES360102 YPA_2758YPA_2759YPA_2759YPA_2758
YPES349746 YPANGOLA_A3460YPANGOLA_A3461YPANGOLA_A3461YPANGOLA_A3460
YPES214092 YPO3267YPO3268YPO3268YPO3267
YPES187410 Y0922Y0921Y0921Y0922
YENT393305 YE3242YE3243YE3243YE3242
XORY360094 XOOORF_2999XOOORF_2998XOOORF_2998XOOORF_2999
XORY342109 XOO1890XOO1891XOO1891XOO1890
XORY291331 XOO2000XOO2001XOO2001XOO2000
XCAM487884 XCC-B100_2898XCC-B100_2897XCC-B100_2897XCC-B100_2898
XCAM316273 XCAORF_1669XCAORF_1670XCAORF_1670XCAORF_1669
XCAM314565 XC_2838XC_2837XC_2837XC_2838
XCAM190485 XCC1399XCC1400XCC1400XCC1399
XAXO190486 XAC1445XAC1446XAC1446XAC1445
XAUT78245 XAUT_1512XAUT_1513XAUT_1513XAUT_1512
VVUL216895 VV2_0170VV2_0169VV2_0169VV2_0170
VVUL196600 VVA0680VVA0679VVA0679VVA0680
VPAR223926 VPA0097VPA0098VPA0098VPA0097
VFIS312309 VF0878VFA1104VFA1104VF0878
VCHO345073 VC0395_A1021VC0395_A1022VC0395_A1022VC0395_A1021
VCHO VC1410VC1411VC1411VC1410
TTUR377629 TERTU_3717TERTU_3718TERTU_3718TERTU_3717
STYP99287 STM2814STM2815STM2815STM2814
SSP94122 SHEWANA3_2225SHEWANA3_2224SHEWANA3_2224SHEWANA3_2225
SSON300269 SSO_2459SSO_2830SSO_2830SSO_2829
SSED425104 SSED_4202SSED_0453SSED_0453SSED_4202
SPRO399741 SPRO_3743SPRO_3744SPRO_3744SPRO_3743
SPEA398579 SPEA_2191SPEA_2190SPEA_2190SPEA_2191
SONE211586 SO_0524SO_0525SO_0525
SMEL266834 SMC03168SMC03167SMC03167SMC03168
SMED366394 SMED_2795SMED_2794SMED_2794SMED_2795
SLOI323850 SHEW_1543SHEW_3405SHEW_3405SHEW_3406
SHIGELLA EMRKEMRBEMRBEMRK
SHAL458817 SHAL_2164SHAL_2163SHAL_2163SHAL_0505
SFUM335543 SFUM_3316SFUM_3317SFUM_3317SFUM_3316
SFLE373384 SFV_2427SFV_2818SFV_2818SFV_2427
SFLE198214 AAN43946.1AAN44205.1AAN44205.1AAN43946.1
SENT454169 SEHA_C2997SEHA_C2998SEHA_C2998SEHA_C2997
SENT321314 SCH_2748SCH_2749SCH_2749SCH_2748
SENT295319 SPA2672SPA2673SPA2673SPA2672
SENT220341 STY2940STY2941STY2941STY2940
SENT209261 T2711T2712T2712T2711
SDYS300267 SDY_2563SDY_2562SDY_2562SDY_2880
SBOY300268 SBO_2394SBO_2831SBO_2831SBO_2832
SBAL402882 SHEW185_3843SHEW185_3842SHEW185_3842SHEW185_3843
SBAL399599 SBAL195_3969SBAL195_3968SBAL195_3968SBAL195_3969
SALA317655 SALA_3115SALA_3117SALA_3117SALA_3115
RSPH349102 RSPH17025_2257RSPH17025_2256RSPH17025_2256RSPH17025_2257
RSPH349101 RSPH17029_0912RSPH17029_0913RSPH17029_0913RSPH17029_0912
RSPH272943 RSP_2237RSP_2238RSP_2238RSP_2237
RSOL267608 RSC1293RSC1292RSC1292RSC1293
RRUB269796 RRU_A0859RRU_A0858RRU_A0858RRU_A0859
RPAL316058 RPB_1980RPB_1981RPB_1981RPB_0207
RPAL316057 RPD_3406RPD_3405RPD_3405RPD_3406
RPAL316056 RPC_2180RPC_0486RPC_0486RPC_3595
RPAL316055 RPE_2092RPE_0190RPE_0190RPE_0189
RPAL258594 RPA3697RPA3698RPA3698RPA3697
RMET266264 RMET_4314RMET_2028RMET_2028RMET_4314
RMAS416276 RMA_0334RMA_0207RMA_0207RMA_0334
RLEG216596 RL4180RL3783RL3783RL4180
RFER338969 RFER_1515RFER_1516RFER_1516RFER_1515
RFEL315456 RF_1044RF_1124RF_1124RF_1044
REUT381666 H16_A2297H16_A2298H16_A2298H16_A2297
REUT264198 REUT_C6205REUT_C6206REUT_A2025REUT_A2024
RETL347834 RHE_CH03652RHE_CH03356RHE_CH03356RHE_CH03652
RCON272944 RC0327RC0200RC0200RC0327
RCAN293613 A1E_01400A1E_00805A1E_00805A1E_01400
RAKA293614 A1C_01775A1C_01105A1C_01105A1C_01775
PSYR223283 PSPTO_3748PSPTO_3747PSPTO_3747PSPTO_3748
PSYR205918 PSYR_1730PSYR_1731PSYR_1731PSYR_1730
PSP296591 BPRO_3235BPRO_3234BPRO_3234BPRO_3235
PPUT76869 PPUTGB1_2373PPUTGB1_2374PPUTGB1_2374PPUTGB1_2373
PPUT351746 PPUT_2225PPUT_2226PPUT_2226PPUT_2225
PPUT160488 PP_3549PP_3548PP_3548PP_3549
PPRO298386 PBPRB1862PBPRB1863PBPRB1863PBPRB1862
PNAP365044 PNAP_1445PNAP_1446PNAP_1446PNAP_1445
PMEN399739 PMEN_2735PMEN_2736PMEN_2736PMEN_2735
PLUM243265 PLU1276PLU1275PLU1275PLU1276
PFLU220664 PFL_3917PFL_3916PFL_3916PFL_3917
PFLU216595 PFLU3876PFLU3875PFLU3875PFLU3876
PFLU205922 PFL_3643PFL_3642PFL_3642PFL_3643
PENT384676 PSEEN2993PSEEN2992PSEEN2992PSEEN2993
PAER208964 PA5159PA5160PA5160PA5159
PAER208963 PA14_68130PA14_68140PA14_68140PA14_68130
OCAR504832 OCAR_5230OCAR_5231OCAR_5231OCAR_5230
OANT439375 OANT_4226OANT_4227OANT_4227OANT_4226
NMEN374833 NMCC_1826NMCC_1825NMCC_1825NMCC_1826
NMEN272831 NMC1853NMC1852NMC1852NMC1853
NMEN122587 NMA2169NMA2168NMA2168NMA2169
NMEN122586 NMB_0318NMB_0319NMB_0319NMB_0318
NHAM323097 NHAM_0616NHAM_0615NHAM_0615NHAM_0616
NGON242231 NGO1683NGO1682NGO1682NGO1683
NARO279238 SARO_1715SARO_1714SARO_1714SARO_1715
MSP409 M446_6561M446_6590M446_6560M446_6561
MSP400668 MMWYL1_2004MMWYL1_0098MMWYL1_0098MMWYL1_2004
MSP266779 MESO_1920MESO_1919MESO_1919MESO_1920
MMAG342108 AMB3998AMB3999AMB3999AMB3998
MLOT266835 MLR8231MLR8233MLR8233MLR8231
MEXT419610 MEXT_4102MEXT_4101MEXT_4101MEXT_4102
MCAP243233 MCA_2257MCA_2258MCA_2258MCA_2257
KPNE272620 GKPORF_B2341GKPORF_B2342GKPORF_B2342GKPORF_B2341
JSP375286 MMA_1123MMA_1124MMA_1124MMA_1123
HINF71421 HI_0898HI_0897HI_0897HI_0898
HINF281310 NTHI1063NTHI1062NTHI1062NTHI1063
HARS204773 HEAR0985HEAR0986HEAR0986HEAR0985
GURA351605 GURA_2705GURA_2706GURA_2706GURA_2705
GSUL243231 GSU_1481GSU_1480GSU_1480GSU_1481
GOXY290633 GOX0784GOX0783GOX0783GOX0784
GMET269799 GMET_1375GMET_1374GMET_1374GMET_1375
GBET391165 GBCGDNIH1_1724GBCGDNIH1_1723GBCGDNIH1_1723GBCGDNIH1_1724
FTUL458234 FTA_0726FTA_0727FTA_0727FTA_0726
FTUL418136 FTW_0687FTW_0688FTW_0688FTW_0687
FTUL401614 FTN_1276FTN_1275FTN_1275FTN_1276
FTUL393115 FTF1257FTF1256FTF1256FTF1257
FTUL393011 FTH_0689FTH_0690FTH_0690FTH_0689
FTUL351581 FTL_0687FTL_0688FTL_0688FTL_0687
FRANT EMRA1EMRBEMRBEMRA1
FPHI484022 FPHI_1408FPHI_1409FPHI_1409FPHI_1408
FJOH376686 FJOH_1354FJOH_3377FJOH_4904FJOH_1354
ESP42895 ENT638_3163ENT638_3164ENT638_3164ENT638_3163
ELIT314225 ELI_15015ELI_15010ELI_15010ELI_15015
EFER585054 EFER_0386EFER_0385EFER_0385EFER_0386
ECOO157 EMRKEMRBEMRBEMRA
ECOL83334 ECS3247ECS3548ECS3548ECS3547
ECOL585397 ECED1_2815ECED1_3140ECED1_3140ECED1_3139
ECOL585057 ECIAI39_2511ECIAI39_2876ECIAI39_2876ECIAI39_2875
ECOL585056 ECUMN_2697ECUMN_3011ECUMN_3011ECUMN_3010
ECOL585055 EC55989_2661EC55989_2953EC55989_2953EC55989_2952
ECOL585035 ECS88_2563ECS88_2951ECS88_2951ECS88_2950
ECOL585034 ECIAI1_2433ECIAI1_2781ECIAI1_2781ECIAI1_2780
ECOL481805 ECOLC_1301ECOLC_1302ECOLC_1302ECOLC_1022
ECOL469008 ECBD_1304ECBD_1305ECBD_1305ECBD_1035
ECOL439855 ECSMS35_2518ECSMS35_2808ECSMS35_2808ECSMS35_2807
ECOL413997 ECB_02278ECB_02541ECB_02541ECB_02540
ECOL409438 ECSE_2665ECSE_2939ECSE_2939ECSE_2938
ECOL405955 APECO1_4168APECO1_4169APECO1_4169APECO1_4168
ECOL364106 UTI89_C2700UTI89_C3046UTI89_C3046UTI89_C3045
ECOL362663 ECP_2393ECP_2651ECP_2651ECP_2650
ECOL331111 ECE24377A_2654ECE24377A_2969ECE24377A_2969ECE24377A_2968
ECOL316407 ECK2364:JW2365:B2368ECK2680:JW2661:B2686ECK2680:JW2661:B2686ECK2679:JW2660:B2685
ECOL199310 C2904C3239C3239C3238
ECAR218491 ECA3512ECA3513ECA3513ECA3512
DPSY177439 DP0154DP0155DP0155DP0154
CVIO243365 CV_0767CV_0766CV_0766CV_0767
CTEP194439 CT_0104CT_0104CT_0105
CSP78 CAUL_3187CAUL_3188CAUL_3188CAUL_3187
CSP501479 CSE45_4792CSE45_4793CSE45_4793CSE45_4792
CSAL290398 CSAL_0552CSAL_0553CSAL_0553CSAL_0552
CPRO264201 PC0128PC0127PC0127PC0128
CCHL340177 CAG_0040CAG_0039CAG_0039CAG_0040
CBUR434922 COXBU7E912_0866COXBU7E912_0865COXBU7E912_0865COXBU7E912_0866
CBUR360115 COXBURSA331_A1150COXBURSA331_A1151COXBURSA331_A1151COXBURSA331_A1150
CBUR227377 CBU_0798CBU_0797CBU_0797CBU_0798
CAULO CC3714CC3715CC3715CC3714
BXEN266265 BXE_B0736BXE_B1129BXE_B1129BXE_B0736
BVIE269482 BCEP1808_1470BCEP1808_0055BCEP1808_1469BCEP1808_1470
BTRI382640 BT_1746BT_1747BT_1747BT_2461
BTHA271848 BTH_I2560BTH_I0022BTH_I0022BTH_I2560
BSUI470137 BSUIS_A1104BSUIS_A1103BSUIS_A1103BSUIS_A1104
BSUI204722 BR_1060BR_1059BR_1059BR_1060
BSP376 BRADO5674BRADO5120BRADO5120BRADO5674
BSP36773 BCEP18194_A4645BCEP18194_A3229BCEP18194_A3229BCEP18194_A4645
BQUI283165 BQ10020BQ10030BQ10030BQ12200
BPSE320373 BURPS668_1744BURPS668_0023BURPS668_1743BURPS668_1744
BPSE320372 BURPS1710B_A2078BURPS1710B_A0247BURPS1710B_A2077BURPS1710B_A2078
BPSE272560 BPSL1914BPSL0022BPSL0022BPSL1914
BPET94624 BPET3075BPET3076BPET3076BPET3075
BPER257313 BP2289BP2290BP2290BP2289
BOVI236 GBOORFA0119GBOORF1057GBOORF1057GBOORFA0119
BMEL224914 BMEII1118BMEI0927BMEI0927BMEII1118
BMAL320389 BMA10247_0995BMA10247_0994BMA10247_0994BMA10247_0995
BMAL320388 BMASAVP1_A1503BMASAVP1_A3503BMASAVP1_A3503BMASAVP1_A1503
BMAL243160 BMA_1057BMA_2770BMA_2770BMA_1057
BJAP224911 BLL6622BLR7594BLL0931BLL6622
BHEN283166 BH12700BH12710BH12710BH15290
BFRA295405 BF3297BF2678BF2678BF3297
BFRA272559 BF3136BF2700BF2700BF3136
BCIC186490 BCI_0460BCI_0459BCI_0459BCI_0460
BCEN331272 BCEN2424_1504BCEN2424_0047BCEN2424_1503BCEN2424_1504
BCEN331271 BCEN_1024BCEN_0023BCEN_1023BCEN_1024
BCAN483179 BCAN_A1075BCAN_A1074BCAN_A1074BCAN_A1075
BBRO257310 BB1888BB1887BB1887BB1888
BBAC360095 BARBAKC583_1088BARBAKC583_1089BARBAKC583_1089BARBAKC583_0117
BAMB398577 BAMMC406_1426BAMMC406_0046BAMMC406_1425BAMMC406_1426
BAMB339670 BAMB_1386BAMB_0037BAMB_1385BAMB_1386
ASP76114 EBA3446EBA3448EBA3448EBA3446
ASP62977 ACIAD0926ACIAD0927ACIAD0927ACIAD0926
ASP232721 AJS_0262AJS_0261AJS_0261AJS_0262
ASAL382245 ASA_3977ASA_3978ASA_3978ASA_3977
AHYD196024 AHA_0355AHA_0354AHA_0354AHA_0355
AFER243159 AFE_2181AFE_0913AFE_0913AFE_2181
ADEH290397 ADEH_1574ADEH_1573ADEH_1573ADEH_1574
ACRY349163 ACRY_0561ACRY_0562ACRY_1891ACRY_0561
ACAU438753 AZC_4436AZC_4437AZC_4437AZC_4436
ABAU360910 BAV2191BAV2192BAV2192BAV2191
ABAC204669 ACID345_3095ACID345_1476ACID345_3094
AAVE397945 AAVE_0322AAVE_0322AAVE_0323


Organism features enriched in list (features available for 188 out of the 201 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 3.480e-61292
Disease:Bubonic_plague 0.001064566
Disease:Dysentery 0.001064566
Disease:Gastroenteritis 0.00096281013
Disease:Opportunistic_infections 0.003362255
Disease:Tularemia 0.003362255
Endospores:No 6.339e-1134211
Endospores:Yes 9.421e-9153
GC_Content_Range4:0-40 1.772e-2021213
GC_Content_Range4:40-60 0.000119992224
GC_Content_Range4:60-100 8.746e-975145
GC_Content_Range7:30-40 1.329e-1121166
GC_Content_Range7:50-60 1.044e-758107
GC_Content_Range7:60-70 1.744e-1074134
Genome_Size_Range5:0-2 1.628e-1217155
Genome_Size_Range5:2-4 6.681e-1032197
Genome_Size_Range5:4-6 9.675e-21109184
Genome_Size_Range5:6-10 2.706e-63047
Genome_Size_Range9:1-2 2.821e-817128
Genome_Size_Range9:2-3 1.001e-716120
Genome_Size_Range9:3-4 0.00678351677
Genome_Size_Range9:4-5 5.219e-65096
Genome_Size_Range9:5-6 2.425e-135988
Genome_Size_Range9:6-8 3.734e-72738
Gram_Stain:Gram_Neg 3.470e-41177333
Habitat:Multiple 5.786e-783178
Habitat:Specialized 0.0000424553
Motility:No 7.708e-1217151
Motility:Yes 1.310e-7115267
Optimal_temp.:25-30 2.407e-101919
Optimal_temp.:35-37 0.0052709913
Oxygen_Req:Aerobic 0.001136675185
Oxygen_Req:Anaerobic 6.741e-910102
Oxygen_Req:Facultative 0.000035086201
Pathogenic_in:Animal 0.00623303066
Pathogenic_in:Human 0.001443484213
Pathogenic_in:No 0.001816558226
Shape:Coccus 1.350e-6982
Shape:Rod 4.793e-18158347
Shape:Sphere 0.0050344119
Shape:Spiral 0.0001656234
Temp._range:Mesophilic 0.0000201170473
Temp._range:Thermophilic 0.0001161235



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 392
Effective number of orgs (counting one per cluster within 468 clusters): 312

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VEIS391735 ncbi Verminephrobacter eiseniae EF01-20
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE292459 ncbi Symbiobacterium thermophilum IAM 148630
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP292414 ncbi Ruegeria sp. TM10400
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SLAC55218 Ruegeria lacuscaerulensis0
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SGOR29390 Streptococcus gordonii Challis0
SGLO343509 ncbi Sodalis glossinidius morsitans0
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2170
SCO ncbi Streptomyces coelicolor A3(2)0
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2050
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RSP357808 ncbi Roseiflexus sp. RS-10
RSP101510 ncbi Rhodococcus jostii RHA11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RPOM246200 ncbi Ruegeria pomeroyi DSS-30
RDEN375451 ncbi Roseobacter denitrificans OCh 1140
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RALB246199 Ruminococcus albus 80
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 231
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMUL272843 ncbi Pasteurella multocida multocida Pm700
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PING357804 ncbi Psychromonas ingrahamii 370
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8310
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSP35761 Nocardioides sp.1
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NFAR247156 ncbi Nocardia farcinica IFM 101521
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
MXAN246197 ncbi Myxococcus xanthus DK 16220
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E0
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM10
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCHO395495 ncbi Leptothrix cholodnii SP-60
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
JSP290400 ncbi Jannaschia sp. CCS10
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-20
GKAU235909 ncbi Geobacillus kaustophilus HTA4260
GFOR411154 ncbi Gramella forsetii KT08030
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP106370 ncbi Frankia sp. CcI30
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DRAD243230 ncbi Deinococcus radiodurans R10
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DHAF138119 ncbi Desulfitobacterium hafniense Y510
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
DARO159087 ncbi Dechloromonas aromatica RCB0
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29011
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDIF272563 ncbi Clostridium difficile 6300
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
CABO218497 ncbi Chlamydophila abortus S26/30
BWEI315730 ncbi Bacillus weihenstephanensis KBAB41
BTUR314724 ncbi Borrelia turicatae 91E1350
BTHU412694 ncbi Bacillus thuringiensis Al Hakam1
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-271
BSUB ncbi Bacillus subtilis subtilis 1681
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BPAR257311 ncbi Bordetella parapertussis 128220
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145801
BHER314723 ncbi Borrelia hermsii DAH0
BHAL272558 ncbi Bacillus halodurans C-1250
BGAR290434 ncbi Borrelia garinii PBi0
BCLA66692 ncbi Bacillus clausii KSM-K161
BCER572264 ncbi Bacillus cereus 03BB1021
BCER288681 ncbi Bacillus cereus E33L1
BCER226900 ncbi Bacillus cereus ATCC 145791
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02481
BANT568206 ncbi Bacillus anthracis CDC 6841
BANT261594 ncbi Bacillus anthracis Ames Ancestor1
BANT260799 ncbi Bacillus anthracis Sterne1
BAMY326423 ncbi Bacillus amyloliquefaciens FZB421
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP62928 ncbi Azoarcus sp. BH720
ASP1667 Arthrobacter sp.0
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL030
APLE416269 ncbi Actinobacillus pleuropneumoniae L200
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG10
AMET293826 ncbi Alkaliphilus metalliredigens QYMF0
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
AAUR290340 ncbi Arthrobacter aurescens TC10
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G7233   EG13283   EG11439   EG11354   
XFAS405440
XFAS183190
XFAS160492
WSUC273121
WPIP955
WPIP80849
VEIS391735
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852
TTHE262724
TTEN273068
TSP28240
TSP1755
TROS309801
TPSE340099
TPET390874
TPEN368408
TPAL243276
TMAR243274
TLET416591
TKOD69014
TFUS269800
TERY203124
TELO197221
TDEN326298
TDEN292415
TDEN243275
TCRU317025
TACI273075
SWOL335541
STRO369723
STOK273063
STHE322159
STHE299768
STHE292459
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP387093
SSP321332
SSP321327
SSP292414
SSP1148
SSP1131
SSOL273057
SSAP342451
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SLAC55218
SHAE279808 SH0706
SGOR29390
SGLO343509
SERY405948 SACE_1355
SEPI176280
SEPI176279
SELO269084
SDEN318161
SCO
SAVE227882
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037
SAGA211110
SAGA208435
SAGA205921
SACI56780
SACI330779
RXYL266117
RSP357808
RSP101510 RHA1_RO06023
RSAL288705
RPOM246200
RDEN375451
RCAS383372
RBEL391896
RALB246199
PTOR263820
PSP312153
PSP117
PRUM264731 GFRORF0501
PPEN278197
PMUL272843
PMOB403833
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PISL384616
PINT246198
PING357804
PHOR70601
PHAL326442
PGIN242619
PFUR186497
PCAR338963
PAST100379
PARS340102
PAER178306
PACN267747
PABY272844
OTSU357244
OIHE221109
NWIN323098
NSP387092 NIS_1720
NSP35761 NOCA_4349
NSP103690
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NFAR247156 NFA47060
NEUT335283
NEUR228410
MXAN246197
MVAN350058 MVAN_4474
MTUB419947
MTUB336982
MTHE349307
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSUC221988
MSTA339860
MSP189918
MSP164757
MSP164756
MSME246196 MSMEG_5046
MSED399549
MPUL272635
MPNE272634
MPET420662
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407
MMAR267377
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MFLA265072
MCAP340047
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAQU351348
MAER449447
MAEO419665
MACE188937
MABS561007
LXYL281090
LWEL386043
LSPH444177
LSAK314315
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LPLA220668
LMON265669
LMON169963
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT363253
LINT267671
LINT189518
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCHO395495
LCAS321967
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
KRAD266940
JSP290400
ILOI283942
IHOS453591
HWAL362976
HSP64091
HSOM228400
HSOM205914
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032
HMUK485914
HMAR272569
HHEP235279
HHAL349124
HDUC233412
HBUT415426
HAUR316274
HACI382638
GVIO251221
GTHE420246
GKAU235909
GFOR411154
FSUC59374
FSP106370
FNUC190304
FNOD381764
FMAG334413
FALN326424 FRAAL2091
ERUM302409
ERUM254945
EFAE226185
ECHA205920
ECAN269484
DVUL882
DSP255470
DSP216389
DSHI398580
DRAD243230
DOLE96561
DNOD246195
DHAF138119
DGEO319795
DETH243164
DDES207559
DARO159087
CVES412965
CTRA471473
CTRA471472
CTET212717
CSUL444179
CRUT413404
CPSY167879
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPER289380
CPER195103
CPER195102
CPEL335992
CNOV386415
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CJAP155077
CHYD246194 CHY_1864
CHUT269798
CHOM360107
CGLU196627
CFET360106
CFEL264202
CEFF196164
CDIP257309
CDIF272563
CDES477974
CCUR360105
CCON360104
CCAV227941
CBOT536232
CBOT515621
CBOT508765
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CBLO291272
CBLO203907
CACE272562
CABO218497
BWEI315730 BCERKBAB4_4399
BTUR314724
BTHU412694 BALH_4152
BTHU281309 BT9727_4299
BSUB BSU09010
BSP107806
BPAR257311
BLON206672
BLIC279010 BL03187
BHER314723
BHAL272558
BGAR290434
BCLA66692 ABC1392
BCER572264 BCA_4677
BCER288681 BCE33L4310
BCER226900 BC_4568
BBUR224326
BBAC264462
BAPH372461
BAPH198804
BANT592021 BAA_4822
BANT568206 BAMEG_4842
BANT261594 GBAA4812
BANT260799 BAS4464
BAMY326423 RBAM_009290
BAFZ390236
AYEL322098
AVAR240292
AURANTIMONAS
ASP62928
ASP1667
APLE434271
APLE416269
APHA212042
APER272557
AORE350688
ANAE240017
AMET293826
AMAR329726
AMAR234826
ALAI441768
AFUL224325
AEHR187272
ACEL351607
ABUT367737
ABOR393595
AAUR290340
AAEO224324


Organism features enriched in list (features available for 369 out of the 392 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 3.846e-88092
Arrangment:Clusters 0.00036551717
Arrangment:Filaments 0.00985961010
Disease:Gastroenteritis 0.0029524313
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00617731111
Disease:Wide_range_of_infections 0.00617731111
Endospores:No 2.826e-13173211
Endospores:Yes 0.00065144453
GC_Content_Range4:0-40 3.271e-19183213
GC_Content_Range4:40-60 2.442e-6116224
GC_Content_Range4:60-100 3.610e-669145
GC_Content_Range7:0-30 6.690e-74447
GC_Content_Range7:30-40 1.303e-11139166
GC_Content_Range7:50-60 3.819e-941107
GC_Content_Range7:60-70 1.126e-759134
Genome_Size_Range5:0-2 3.932e-12132155
Genome_Size_Range5:2-4 1.019e-8155197
Genome_Size_Range5:4-6 9.678e-2067184
Genome_Size_Range5:6-10 4.079e-61547
Genome_Size_Range9:0-1 3.012e-62727
Genome_Size_Range9:1-2 1.426e-7105128
Genome_Size_Range9:2-3 6.205e-8100120
Genome_Size_Range9:4-5 3.746e-64196
Genome_Size_Range9:5-6 2.287e-122688
Genome_Size_Range9:6-8 2.701e-7938
Gram_Stain:Gram_Neg 1.456e-39139333
Gram_Stain:Gram_Pos 1.734e-25143150
Habitat:Multiple 0.000049792178
Habitat:Specialized 0.00005594653
Motility:No 1.010e-12130151
Motility:Yes 6.014e-7141267
Optimal_temp.:- 0.0090511151257
Optimal_temp.:30-37 0.00022731818
Oxygen_Req:Aerobic 0.0009383101185
Oxygen_Req:Anaerobic 2.785e-684102
Oxygen_Req:Facultative 0.0005958110201
Pathogenic_in:Human 0.0034778121213
Pathogenic_in:No 0.0021360158226
Shape:Coccus 4.057e-77182
Shape:Irregular_coccus 0.00036551717
Shape:Rod 2.079e-22166347
Shape:Sphere 0.00163571819
Shape:Spiral 0.00002213234
Temp._range:Hyperthermophilic 0.00002082323
Temp._range:Mesophilic 0.0001021283473
Temp._range:Thermophilic 0.00191193035



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GLYCOCAT-PWY (glycogen degradation I)2461750.6717
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001890.6337
PWY-1269 (CMP-KDO biosynthesis I)3251960.6265
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491240.6112
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961840.6085
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951450.6078
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911820.6064
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901800.5950
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481950.5720
PWY-5918 (heme biosynthesis I)2721700.5694
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911380.5688
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251520.5676
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861740.5631
PWY-4041 (γ-glutamyl cycle)2791710.5592
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181480.5591
PWY-5028 (histidine degradation II)1301080.5582
PWY-5913 (TCA cycle variation IV)3011770.5489
TYRFUMCAT-PWY (tyrosine degradation I)1841320.5467
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112970.5442
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96860.5233
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761240.5126
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831270.5123
AST-PWY (arginine degradation II (AST pathway))120970.5075
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391810.4938
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491500.4883
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491500.4883
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291770.4873
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911270.4869
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561110.4808
GLUCONSUPER-PWY (D-gluconate degradation)2291410.4780
KDOSYN-PWY (KDO transfer to lipid IVA I)1801200.4691
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)1791190.4647
GALACTITOLCAT-PWY (galactitol degradation)73670.4638
PWY-5148 (acyl-CoA hydrolysis)2271380.4621
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551480.4590
PWY-46 (putrescine biosynthesis III)1381000.4587
PWY-5669 (phosphatidylethanolamine biosynthesis I)4161970.4577
GALACTCAT-PWY (D-galactonate degradation)104830.4553
REDCITCYC (TCA cycle variation II)1741150.4505
PWY-3162 (tryptophan degradation V (side chain pathway))94770.4477
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981910.4474
PWY0-981 (taurine degradation IV)106830.4459
P601-PWY (D-camphor degradation)95770.4427
PWY0-1353 (succinate to cytochrome bd oxidase electron transfer)1781130.4224
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001580.4206
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135940.4204
PWY0-1182 (trehalose degradation II (trehalase))70610.4177
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138950.4174
PLPSAL-PWY (pyridoxal 5'-phosphate salvage pathway)3741800.4159
P344-PWY (acrylonitrile degradation)2101250.4158
PWY-6087 (4-chlorocatechol degradation)2231300.4158
PWY0-501 (lipoate biosynthesis and incorporation I)3851830.4154
DAPLYSINESYN-PWY (lysine biosynthesis I)3421700.4117
PWY-5084 (2-ketoglutarate dehydrogenase complex)3261650.4112
LIPASYN-PWY (phospholipases)2121240.4029
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4221910.4029
PWY-2361 (3-oxoadipate degradation)82660.4016



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG13283   EG11439   EG11354   
G72330.9998340.9998450.999903
EG132830.9999290.999829
EG114390.999841
EG11354



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PAIRWISE BLAST SCORES:

  G7233   EG13283   EG11439   EG11354   
G72330.0f0--3.1e-88
EG13283-0.0f00-
EG11439-00.0f0-
EG113541.0e-89--0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- CPLX0-2121 (EmrAB-TolC multidrug efflux transport system) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.500, average score: 0.573)
  Genes in pathway or complex:
             0.4166 0.3586 EG11009 (tolC) EG11009-MONOMER (TolC outer membrane channel)
   *in cand* 0.9999 0.9998 EG11439 (emrB) EMRB-MONOMER (EmrB multidrug MFS transporter)
   *in cand* 0.9999 0.9998 EG11354 (emrA) EG11354-MONOMER (EmrA Membrane Fusion Protein)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9999 0.9998 EG13283 (emrY) EMRY-MONOMER (EmrY putative multidrug MFS transporter)
   *in cand* 0.9999 0.9998 G7233 (emrK) G7233-MONOMER (EmrK putative membrane fusion protein)

- CPLX0-2161 (EmrKY-TolC putative multidrug efflux transport system) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.500, average score: 0.649)
  Genes in pathway or complex:
             0.4166 0.3586 EG11009 (tolC) EG11009-MONOMER (TolC outer membrane channel)
   *in cand* 0.9999 0.9998 EG13283 (emrY) EMRY-MONOMER (EmrY putative multidrug MFS transporter)
   *in cand* 0.9999 0.9998 G7233 (emrK) G7233-MONOMER (EmrK putative membrane fusion protein)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9999 0.9998 EG11354 (emrA) EG11354-MONOMER (EmrA Membrane Fusion Protein)
   *in cand* 0.9999 0.9998 EG11439 (emrB) EMRB-MONOMER (EmrB multidrug MFS transporter)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11354 EG11439 (centered at EG11439)
EG13283 G7233 (centered at G7233)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7233   EG13283   EG11439   EG11354   
211/623232/623231/623213/623
AAVE397945:0:Tyes-001
ABAC204669:0:Tyes163001629-
ABAU360910:0:Tyes0110
ACAU438753:0:Tyes0110
ACRY349163:8:Tyes0113350
ADEH290397:0:Tyes1001
AFER243159:0:Tyes1250001250
AHYD196024:0:Tyes1001
ASAL382245:5:Tyes0110
ASP232721:2:Tyes1001
ASP62977:0:Tyes0110
ASP76114:2:Tyes0110
BABO262698:0:Tno0--0
BAMB339670:3:Tno1390013891390
BAMB398577:3:Tno1402014011402
BAMY326423:0:Tyes-0--
BANT260799:0:Tno--0-
BANT261594:2:Tno--0-
BANT568206:2:Tyes--0-
BANT592021:2:Tno--0-
BBAC360095:0:Tyes8978988980
BBRO257310:0:Tyes1001
BCAN483179:1:Tno1001
BCEN331271:2:Tno1017010161017
BCEN331272:3:Tyes1455014541455
BCER226900:1:Tyes--0-
BCER288681:0:Tno--0-
BCER315749:1:Tyes-00-
BCER405917:1:Tyes-02635-
BCER572264:1:Tno--0-
BCIC186490:0:Tyes1001
BCLA66692:0:Tyes-0--
BFRA272559:1:Tyes44000440
BFRA295405:0:Tno62200622
BHEN283166:0:Tyes011225
BJAP224911:0:Fyes5731670505731
BLIC279010:0:Tyes-0--
BMAL243160:1:Tno0153415340
BMAL320388:1:Tno0194919490
BMAL320389:1:Tyes1001
BMEL224914:0:Tno0--0
BMEL224914:1:Tno-00-
BMEL359391:0:Tno0--0
BOVI236:0:Tyes0--0
BOVI236:1:Tyes-00-
BPER257313:0:Tyes0110
BPET94624:0:Tyes0110
BPSE272560:1:Tyes1893001893
BPSE320372:1:Tno1812018111812
BPSE320373:1:Tno1667016661667
BPUM315750:0:Tyes-00-
BQUI283165:0:Tyes011174
BSP36773:2:Tyes1444001444
BSP376:0:Tyes53000530
BSUB:0:Tyes-0--
BSUI204722:1:Tyes1001
BSUI470137:1:Tno1001
BTHA271848:1:Tno2497002497
BTHE226186:0:Tyes0--1583
BTHU281309:1:Tno--0-
BTHU412694:1:Tno--0-
BTRI382640:1:Tyes011402
BVIE269482:7:Tyes1400013991400
BWEI315730:4:Tyes--0-
BXEN266265:1:Tyes39200392
CAULO:0:Tyes0110
CBEI290402:0:Tyes-00-
CBUR227377:1:Tyes1001
CBUR360115:1:Tno0110
CBUR434922:2:Tno1001
CCHL340177:0:Tyes1001
CHYD246194:0:Tyes-0--
CKLU431943:1:Tyes-00-
CPRO264201:0:Fyes1001
CSAL290398:0:Tyes0110
CSP501479:4:Fyes0110
CSP78:2:Tyes0110
CTEP194439:0:Tyes-001
CVIO243365:0:Tyes1001
DPSY177439:2:Tyes0110
DRED349161:0:Tyes-00-
ECAR218491:0:Tyes0110
ECOL199310:0:Tno0335335334
ECOL316407:0:Tno0301301300
ECOL331111:6:Tno0297297296
ECOL362663:0:Tno0261261260
ECOL364106:1:Tno0343343342
ECOL405955:2:Tyes1001
ECOL409438:6:Tyes0284284283
ECOL413997:0:Tno0271271270
ECOL439855:4:Tno0276276275
ECOL469008:0:Tno2782792790
ECOL481805:0:Tno2872882880
ECOL585034:0:Tno0345345344
ECOL585035:0:Tno0373373372
ECOL585055:0:Tno0292292291
ECOL585056:2:Tno0320320319
ECOL585057:0:Tno0369369368
ECOL585397:0:Tno0320320319
ECOL83334:0:Tno0313313312
ECOLI:0:Tno10323322
ECOO157:0:Tno0313313312
EFER585054:1:Tyes1001
ELIT314225:0:Tyes1001
ESP42895:1:Tyes0110
FALN326424:0:Tyes-0--
FJOH376686:0:Tyes0204335680
FPHI484022:1:Tyes0110
FRANT:0:Tno1001
FSP1855:0:Tyes-01635-
FTUL351581:0:Tno0110
FTUL393011:0:Tno0110
FTUL393115:0:Tyes1001
FTUL401614:0:Tyes1001
FTUL418136:0:Tno0110
FTUL458234:0:Tno0110
GBET391165:0:Tyes1001
GMET269799:1:Tyes1001
GOXY290633:5:Tyes1001
GSUL243231:0:Tyes1001
GURA351605:0:Tyes0110
HARS204773:0:Tyes0110
HCHE349521:0:Tyes-00-
HINF281310:0:Tyes1001
HINF374930:0:Tyes0--0
HINF71421:0:Tno1001
HMOD498761:0:Tyes-00-
JSP375286:0:Tyes0110
KPNE272620:2:Tyes0110
MCAP243233:0:Tyes0110
MEXT419610:0:Tyes1001
MLOT266835:2:Tyes0110
MMAG342108:0:Tyes0110
MSME246196:0:Tyes-0--
MSP266779:3:Tyes1001
MSP400668:0:Tyes1909001909
MSP409:2:Tyes13101
MTHE264732:0:Tyes-00-
MVAN350058:0:Tyes-0--
NARO279238:0:Tyes1001
NFAR247156:2:Tyes-0--
NGON242231:0:Tyes1001
NHAM323097:2:Tyes1001
NMEN122586:0:Tno0110
NMEN122587:0:Tyes1001
NMEN272831:0:Tno1001
NMEN374833:0:Tno1001
NSP35761:1:Tyes-0--
NSP387092:0:Tyes--0-
OANT439375:4:Tyes0110
OCAR504832:0:Tyes0110
PAER208963:0:Tyes0110
PAER208964:0:Tno0110
PARC259536:0:Tyes0--0
PATL342610:0:Tyes0--0
PCRY335284:1:Tyes0--0
PDIS435591:0:Tyes0--0
PENT384676:0:Tyes1001
PFLU205922:0:Tyes1001
PFLU216595:1:Tyes1001
PFLU220664:0:Tyes1001
PLUM243265:0:Fyes1001
PLUT319225:0:Tyes-00-
PMEN399739:0:Tyes0110
PNAP365044:8:Tyes0110
PPRO298386:1:Tyes0110
PPUT160488:0:Tno1001
PPUT351746:0:Tyes0110
PPUT76869:0:Tno0110
PRUM264731:0:Tyes---0
PSP296591:2:Tyes1001
PSP56811:2:Tyes0--0
PSTU379731:0:Tyes0--0
PSYR205918:0:Tyes0110
PSYR223283:2:Tyes1001
PTHE370438:0:Tyes-00-
RAKA293614:0:Fyes11800118
RBEL336407:0:Tyes-171-0
RCAN293613:0:Fyes12000120
RCON272944:0:Tno13100131
RETL347834:5:Tyes29300293
REUT264198:1:Tyes01--
REUT264198:3:Tyes--10
REUT381666:2:Tyes0110
RFEL315456:2:Tyes081810
RFER338969:1:Tyes0110
RLEG216596:6:Tyes40100401
RMAS416276:1:Tyes920092
RMET266264:1:Tyes0--0
RMET266264:2:Tyes-00-
RPAL258594:0:Tyes0110
RPAL316055:0:Tyes1887110
RPAL316056:0:Tyes1688003111
RPAL316057:0:Tyes1001
RPAL316058:0:Tyes1790179117910
RPRO272947:0:Tyes-00-
RRIC392021:0:Fno-00-
RRIC452659:0:Tyes-00-
RRUB269796:1:Tyes1001
RSOL267608:1:Tyes1001
RSP101510:3:Fyes-0--
RSPH272943:4:Tyes0110
RSPH349101:2:Tno0110
RSPH349102:5:Tyes1001
RTYP257363:0:Tno-00-
SALA317655:1:Tyes0110
SBAL399599:3:Tyes1001
SBAL402882:1:Tno1001
SBOY300268:1:Tyes0412412413
SDEG203122:0:Tyes-00-
SDYS300267:1:Tyes100293
SENT209261:0:Tno0110
SENT220341:0:Tno0110
SENT295319:0:Tno0110
SENT321314:2:Tno0110
SENT454169:2:Tno0110
SERY405948:0:Tyes-0--
SFLE198214:0:Tyes02712710
SFLE373384:0:Tno03753750
SFUM335543:0:Tyes0110
SHAE279808:0:Tyes--0-
SHAL458817:0:Tyes1723172217220
SHIGELLA:0:Tno02872870
SLOI323850:0:Tyes0191219121913
SMED366394:3:Tyes1001
SMEL266834:2:Tyes1001
SONE211586:1:Tyes011-
SPEA398579:0:Tno1001
SPRO399741:1:Tyes0110
SSED425104:0:Tyes3862003862
SSON300269:1:Tyes0352352351
SSP644076:3:Fyes0--0
SSP94122:1:Tyes1001
STYP99287:1:Tyes0110
TTUR377629:0:Tyes0110
VCHO:0:Tyes0110
VCHO345073:1:Tno0110
VFIS312309:1:Tyes-00-
VFIS312309:2:Tyes0--0
VPAR223926:0:Tyes0110
VVUL196600:1:Tyes1001
VVUL216895:0:Tno1001
XAUT78245:1:Tyes0110
XAXO190486:0:Tyes0110
XCAM190485:0:Tyes0110
XCAM314565:0:Tno1001
XCAM316273:0:Tno0110
XCAM487884:0:Tno1001
XORY291331:0:Tno0110
XORY342109:0:Tyes0110
XORY360094:0:Tno2002
YENT393305:1:Tyes0110
YPES187410:5:Tno1001
YPES214092:3:Tno0110
YPES349746:2:Tno0110
YPES360102:3:Tyes0110
YPES377628:2:Tno1001
YPES386656:2:Tno0110
YPSE273123:2:Tno1001
YPSE349747:2:Tno0110
ZMOB264203:0:Tyes0110



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