CANDIDATE ID: 320

CANDIDATE ID: 320

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9956050e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:   1.1000000e-48

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG11857 (fdoH) (b3893)
   Products of gene:
     - FDOH-MONOMER (formate dehydrogenase-O, β subunit)
     - FORMATEDEHYDROGO-CPLX (formate dehydrogenase-O)
       Reactions:
        formate[periplasmic space] + a menaquinone + 2 H+  ->  CO2[periplasmic space] + a menaquinol + H+[periplasmic space]
         In pathways
         PWY0-1321 (formate to nitrate electron transfer)
         PWY0-1356 (formate to dimethyl sulfoxide electron transfer)
         PWY0-1355 (formate to trimethylamine N-oxide electron transfer)

- EG11856 (fdoI) (b3892)
   Products of gene:
     - FDOI-MONOMER (formate dehydrogenase-O, γ subunit)
     - FORMATEDEHYDROGO-CPLX (formate dehydrogenase-O)
       Reactions:
        formate[periplasmic space] + a menaquinone + 2 H+  ->  CO2[periplasmic space] + a menaquinol + H+[periplasmic space]
         In pathways
         PWY0-1321 (formate to nitrate electron transfer)
         PWY0-1356 (formate to dimethyl sulfoxide electron transfer)
         PWY0-1355 (formate to trimethylamine N-oxide electron transfer)

- EG11229 (fdnI) (b1476)
   Products of gene:
     - FDNI-MONOMER (formate dehydrogenase N, γ subunit)
     - ALPHA-SUBUNIT-CPLX (trimer complex of formate dehydrogenase-N α, β and γ subunits)
     - FORMATEDEHYDROGN-CPLX (formate dehydrogenase-N)
       Reactions:
        formate[periplasmic space] + a menaquinone + 2 H+  ->  CO2[periplasmic space] + a menaquinol + H+[periplasmic space]
         In pathways
         PWY0-1321 (formate to nitrate electron transfer)
         PWY0-1356 (formate to dimethyl sulfoxide electron transfer)
         PWY0-1355 (formate to trimethylamine N-oxide electron transfer)

- EG11228 (fdnH) (b1475)
   Products of gene:
     - FDNH-MONOMER (formate dehydrogenase N, β subunit)
     - ALPHA-SUBUNIT-CPLX (trimer complex of formate dehydrogenase-N α, β and γ subunits)
     - FORMATEDEHYDROGN-CPLX (formate dehydrogenase-N)
       Reactions:
        formate[periplasmic space] + a menaquinone + 2 H+  ->  CO2[periplasmic space] + a menaquinol + H+[periplasmic space]
         In pathways
         PWY0-1321 (formate to nitrate electron transfer)
         PWY0-1356 (formate to dimethyl sulfoxide electron transfer)
         PWY0-1355 (formate to trimethylamine N-oxide electron transfer)



Back to top


ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 129
Effective number of orgs (counting one per cluster within 468 clusters): 81

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XAUT78245 ncbi Xanthobacter autotrophicus Py24
WSUC273121 ncbi Wolinella succinogenes DSM 17404
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1143
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen4
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
STHE292459 ncbi Symbiobacterium thermophilum IAM 148634
SSP94122 ncbi Shewanella sp. ANA-34
SSON300269 ncbi Shigella sonnei Ss0464
SSED425104 ncbi Shewanella sediminis HAW-EB34
SPRO399741 ncbi Serratia proteamaculans 5684
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-14
SMEL266834 ncbi Sinorhizobium meliloti 10214
SLOI323850 ncbi Shewanella loihica PV-43
SLAC55218 Ruegeria lacuscaerulensis4
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
SACI56780 ncbi Syntrophus aciditrophicus SB4
RPOM246200 ncbi Ruegeria pomeroyi DSS-34
RFER338969 ncbi Rhodoferax ferrireducens T1184
REUT381666 ncbi Ralstonia eutropha H164
RDEN375451 ncbi Roseobacter denitrificans OCh 1144
PTHE370438 ncbi Pelotomaculum thermopropionicum SI4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
OCAR504832 ncbi Oligotropha carboxidovorans OM54
OANT439375 ncbi Ochrobactrum anthropi ATCC 491884
MTHE264732 ncbi Moorella thermoacetica ATCC 390733
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSP409 Methylobacterium sp.4
MPET420662 ncbi Methylibium petroleiphilum PM14
MMAG342108 ncbi Magnetospirillum magneticum AMB-14
MCAP243233 ncbi Methylococcus capsulatus Bath4
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
HINF71421 ncbi Haemophilus influenzae Rd KW204
HINF374930 ncbi Haemophilus influenzae PittEE4
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HHAL349124 ncbi Halorhodospira halophila SL13
HDUC233412 ncbi Haemophilus ducreyi 35000HP4
HBUT415426 ncbi Hyperthermus butylicus DSM 54563
HARS204773 ncbi Herminiimonas arsenicoxydans4
GURA351605 ncbi Geobacter uraniireducens Rf44
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DSHI398580 ncbi Dinoroseobacter shibae DFL 124
DHAF138119 ncbi Desulfitobacterium hafniense Y514
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G203
DARO159087 ncbi Dechloromonas aromatica RCB4
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CSP501479 Citreicella sp. SE454
CJEJ407148 ncbi Campylobacter jejuni jejuni 811163
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1763
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29014
BXEN266265 ncbi Burkholderia xenovorans LB4004
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTHA271848 ncbi Burkholderia thailandensis E2644
BSP36773 Burkholderia sp.4
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
ASP76114 ncbi Aromatoleum aromaticum EbN14
ASP232721 ncbi Acidovorax sp. JS423
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AHYD196024 Aeromonas hydrophila dhakensis4
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C4
ACAU438753 ncbi Azorhizobium caulinodans ORS 5714
ABAU360910 ncbi Bordetella avium 197N4
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3454
AAEO224324 ncbi Aquifex aeolicus VF54


Names of the homologs of the genes in the group in each of these orgs
  EG11857   EG11856   EG11229   EG11228   
YPSE349747 YPSIP31758_4118YPSIP31758_4117YPSIP31758_4117YPSIP31758_4118
YPSE273123 YPTB3928YPTB3929YPTB3929YPTB3928
YPES386656 YPDSF_0036YPDSF_0037YPDSF_0037YPDSF_0036
YPES377628 YPN_3704YPN_3703YPN_3703YPN_3704
YPES360102 YPA_3028YPA_3029YPA_3029YPA_3028
YPES349746 YPANGOLA_A3769YPANGOLA_A3768YPANGOLA_A3768YPANGOLA_A3769
YPES214092 YPO4057YPO4056YPO4056YPO4057
YPES187410 Y4077Y4076Y4076Y4077
YENT393305 YE4134YE4133YE4133YE4134
XAUT78245 XAUT_0661XAUT_0660XAUT_0660XAUT_0661
WSUC273121 WS0936WS1148WS1148WS0936
VVUL216895 VV1_3033VV1_2592VV1_2592VV1_3033
VVUL196600 VV1252VV1698VV1698VV1252
VPAR223926 VP1927VP1515VP1515VP1927
VFIS312309 VFA0081VF1357VFA0081
SWOL335541 SWOL_0798SWOL_1823SWOL_0797SWOL_0798
STYP99287 STM4036STM4035STM1568STM1569
STHE292459 STH3100STH112STH112STH3100
SSP94122 SHEWANA3_2090SHEWANA3_2091SHEWANA3_2091SHEWANA3_0103
SSON300269 SSO_4062SSO_4061SSO_1648SSO_1649
SSED425104 SSED_2922SSED_4415SSED_4415SSED_2798
SPRO399741 SPRO_0085SPRO_0086SPRO_0086SPRO_0085
SPEA398579 SPEA_0439SPEA_0440SPEA_0440SPEA_0439
SONE211586 SO_0102SO_0103SO_0103SO_0102
SMEL266834 SMA0005SMA0007SMA0007SMA0005
SLOI323850 SHEW_3157SHEW_0065SHEW_0065
SLAC55218 SL1157_1489SL1157_3196SL1157_3196SL1157_1489
SHIGELLA FDOHFDOIFDNIFDNH
SHAL458817 SHAL_0494SHAL_0495SHAL_0495SHAL_0494
SFLE373384 SFV_3602SFV_3603SFV_1745SFV_1746
SFLE198214 AAN45404.1AAN45403.1AAN43321.1AAN43322.1
SENT454169 SEHA_C4362SEHA_C4361SEHA_C1745SEHA_C1746
SENT321314 SCH_3926SCH_3925SCH_1569SCH_1570
SENT295319 SPA3878SPA3877SPA1300SPA1299
SENT220341 STY3841STY3842STY3842STY3841
SENT209261 T3584T3585T3585T3584
SDYS300267 SDY_3850SDY_3851SDY_1606SDY_1605
SBOY300268 SBO_3907SBO_3906SBO_1581SBO_1582
SBAL402882 SHEW185_0101SHEW185_0102SHEW185_0102SHEW185_0101
SBAL399599 SBAL195_0106SBAL195_0107SBAL195_0107SBAL195_0106
SACI56780 SYN_00604SYN_00632SYN_00632SYN_00604
RPOM246200 SPO_3558SPO_1794SPO_1794SPO_3558
RFER338969 RFER_4089RFER_3258RFER_3258RFER_4089
REUT381666 H16_B1453H16_B1454H16_B1454H16_B1453
RDEN375451 RD1_0974RD1_2895RD1_2895RD1_0974
PTHE370438 PTH_1713PTH_2705PTH_2705PTH_1713
PSTU379731 PST_0165PST_0164PST_0164PST_0165
PPUT76869 PPUTGB1_0533PPUTGB1_0534PPUTGB1_0534PPUTGB1_0533
PPUT351746 PPUT_0524PPUT_0525PPUT_0525PPUT_0524
PPUT160488 PP_0490PP_0491PP_0491PP_0490
PMUL272843 PM0407PM0406PM0406PM0407
PLUM243265 PLU4888PLU4889PLU4889PLU4888
PFLU205922 PFL_2699PFL_2700PFL_2700PFL_2699
PENT384676 PSEEN0565PSEEN0566PSEEN0566PSEEN0565
PAER208964 PA4811PA4810PA4810PA4811
PAER208963 PA14_63580PA14_63570PA14_63570PA14_63580
OCAR504832 OCAR_6767OCAR_5161OCAR_5161OCAR_5160
OANT439375 OANT_2864OANT_2865OANT_2865OANT_2864
MTHE264732 MOTH_0451MOTH_0452MOTH_0451
MSUC221988 MS1029MS0889MS1028MS1029
MSP409 M446_5827M446_3089M446_3089M446_5827
MPET420662 MPE_A0859MPE_A1173MPE_A1173MPE_A0859
MMAG342108 AMB1649AMB2674AMB2674AMB1649
MCAP243233 MCA_1209MCA_1208MCA_1208MCA_1209
KPNE272620 GKPORF_B3530GKPORF_B3529GKPORF_B0954GKPORF_B0955
HINF71421 HI_0007HI_0008HI_0008HI_0007
HINF374930 CGSHIEE_03280CGSHIEE_03275CGSHIEE_03275CGSHIEE_03280
HINF281310 NTHI0010NTHI0011NTHI0011NTHI0010
HHAL349124 HHAL_1935HHAL_1164HHAL_1935
HDUC233412 HD_0349HD_1111HD_1111HD_0349
HBUT415426 HBUT_1052HBUT_1053HBUT_1052
HARS204773 HEAR3343HEAR1415HEAR1415HEAR3343
GURA351605 GURA_3373GURA_3372GURA_3372GURA_3373
ESP42895 ENT638_4086ENT638_4087ENT638_2052ENT638_2053
EFER585054 EFER_3884EFER_3885EFER_1492EFER_1491
ECOO157 FDOHFDOIFDNIFDNH
ECOL83334 ECS4819ECS4818ECS2080ECS2079
ECOL585397 ECED1_4596ECED1_4595ECED1_1627ECED1_1626
ECOL585057 ECIAI39_3106ECIAI39_3107ECIAI39_1739ECIAI39_1738
ECOL585056 ECUMN_4423ECUMN_4422ECUMN_1730ECUMN_1729
ECOL585055 EC55989_4370EC55989_4369EC55989_1608EC55989_1607
ECOL585035 ECS88_4341ECS88_4340ECS88_1569ECS88_1568
ECOL585034 ECIAI1_4097ECIAI1_4096ECIAI1_1480ECIAI1_1479
ECOL481805 ECOLC_4125ECOLC_4126ECOLC_2181ECOLC_2182
ECOL469008 ECBD_4132ECBD_4133ECBD_2163ECBD_2164
ECOL439855 ECSMS35_4279ECSMS35_4278ECSMS35_1698ECSMS35_1699
ECOL413997 ECB_03778ECB_03777ECB_01434ECB_01433
ECOL409438 ECSE_4179ECSE_4178ECSE_1565ECSE_1564
ECOL405955 APECO1_2572APECO1_2573APECO1_611APECO1_2572
ECOL364106 UTI89_C4480UTI89_C4479UTI89_C1692UTI89_C1691
ECOL362663 ECP_4105ECP_4104ECP_1477ECP_1476
ECOL331111 ECE24377A_4422ECE24377A_4421ECE24377A_1658ECE24377A_1657
ECOL316407 ECK3886:JW3864:B3893ECK3885:JW3863:B3892ECK1470:JW1472:B1476ECK1469:JW1471:B1475
ECOL199310 C4843C4842C1907C1906
ECAR218491 ECA1407ECA1406ECA1406ECA1407
DSHI398580 DSHI_1237DSHI_0506DSHI_0506DSHI_1237
DHAF138119 DSY3100DSY3099DSY3099DSY3100
DDES207559 DDE_0718DDE_0680DDE_0718
DARO159087 DARO_1817DARO_1816DARO_1816DARO_1817
CVIO243365 CV_3840CV_3841CV_3841CV_3840
CSP501479 CSE45_3304CSE45_5342CSE45_5342CSE45_3304
CJEJ407148 C8J_1484C8J_1412C8J_1412
CJEJ354242 CJJ81176_1571CJJ81176_1501CJJ81176_1501
CHYD246194 CHY_0794CHY_0795CHY_0795CHY_0794
BXEN266265 BXE_B2552BXE_B2551BXE_B2551BXE_B2552
BVIE269482 BCEP1808_4487BCEP1808_4488BCEP1808_4488BCEP1808_4487
BTHA271848 BTH_II0708BTH_II0709BTH_II0709BTH_II0708
BSP36773 BCEP18194_B2099BCEP18194_B2098BCEP18194_B2098BCEP18194_B2099
BPSE320373 BURPS668_A2395BURPS668_A2394BURPS668_A2394BURPS668_A2395
BPSE320372 BURPS1710B_B0860BURPS1710B_B0859BURPS1710B_B0859BURPS1710B_B0860
BPSE272560 BPSS1666BPSS1665BPSS1665BPSS1666
BMAL320389 BMA10247_A0572BMA10247_A0573BMA10247_A0573BMA10247_A0572
BMAL320388 BMASAVP1_1693BMASAVP1_1694BMASAVP1_1694BMASAVP1_1693
BMAL243160 BMA_A1682BMA_A1681BMA_A1681BMA_A1682
BCEN331272 BCEN2424_3985BCEN2424_3986BCEN2424_3986BCEN2424_3985
BCEN331271 BCEN_4381BCEN_4380BCEN_4380BCEN_4381
BAMB398577 BAMMC406_3880BAMMC406_3881BAMMC406_3881BAMMC406_3880
BAMB339670 BAMB_3378BAMB_3379BAMB_3379BAMB_3378
ASP76114 EBA3055EBA2933EBA2933EBA3055
ASP232721 AJS_2422AJS_3461AJS_3461
APLE434271 APJL_0906APJL_0907APJL_0907APJL_0906
APLE416269 APL_0894APL_0895APL_0895APL_0894
AHYD196024 AHA_2525AHA_3061AHA_3061AHA_2525
AEHR187272 MLG_1676MLG_1289MLG_1289MLG_1676
ADEH290397 ADEH_3755ADEH_3756ADEH_3756ADEH_3755
ACAU438753 AZC_1158AZC_1157AZC_1157AZC_1158
ABAU360910 BAV3144BAV3145BAV3145BAV3144
ABAC204669 ACID345_0869ACID345_0870ACID345_0870ACID345_0869
AAEO224324 AQ_1046AQ_1049AQ_1049AQ_1046


Organism features enriched in list (features available for 122 out of the 129 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00700161192
Arrangment:Pairs 0.005422433112
Disease:Bubonic_plague 0.000076166
Disease:Dysentery 0.000076166
Disease:Gastroenteritis 0.00001771013
Disease:Glanders_and_pneumonia 0.008985833
Disease:Melioidosis 0.008985833
Disease:Opportunistic_infections 0.000375755
Disease:chronic_bronchitis 0.008985833
Endospores:No 0.000415629211
Endospores:Yes 0.0043780453
GC_Content_Range4:0-40 1.993e-187213
GC_Content_Range4:40-60 1.145e-976224
GC_Content_Range7:30-40 3.856e-127166
GC_Content_Range7:50-60 4.210e-946107
GC_Content_Range7:60-70 0.005741338134
Genome_Size_Range5:0-2 5.254e-108155
Genome_Size_Range5:2-4 9.916e-818197
Genome_Size_Range5:4-6 8.169e-1879184
Genome_Size_Range5:6-10 0.00539311747
Genome_Size_Range9:1-2 3.449e-78128
Genome_Size_Range9:2-3 0.000028710120
Genome_Size_Range9:3-4 0.0050625877
Genome_Size_Range9:4-5 1.995e-74096
Genome_Size_Range9:5-6 3.738e-83988
Genome_Size_Range9:6-8 0.00361471538
Gram_Stain:Gram_Neg 7.191e-18109333
Gram_Stain:Gram_Pos 2.858e-143150
Habitat:Multiple 0.000998551178
Motility:No 2.230e-107151
Motility:Yes 1.640e-883267
Optimal_temp.:- 0.009205964257
Oxygen_Req:Aerobic 0.000010920185
Oxygen_Req:Anaerobic 0.001741111102
Oxygen_Req:Facultative 6.486e-1173201
Pathogenic_in:Human 0.002824657213
Pathogenic_in:No 0.000877833226
Shape:Coccus 2.281e-6382
Shape:Rod 3.295e-898347



Back to top


ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 429
Effective number of orgs (counting one per cluster within 468 clusters): 330

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79010
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SGLO343509 ncbi Sodalis glossinidius morsitans0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2170
SDEG203122 ncbi Saccharophagus degradans 2-401
SCO ncbi Streptomyces coelicolor A3(2)0
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170250
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170290
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.10
RSP357808 ncbi Roseiflexus sp. RS-11
RSP101510 ncbi Rhodococcus jostii RHA11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111700
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316058 ncbi Rhodopseudomonas palustris HaA20
RPAL316057 ncbi Rhodopseudomonas palustris BisB50
RPAL316056 ncbi Rhodopseudomonas palustris BisB180
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RPAL258594 ncbi Rhodopseudomonas palustris CGA0090
RMAS416276 ncbi Rickettsia massiliae MTU50
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38410
RFEL315456 ncbi Rickettsia felis URRWXCal20
RETL347834 ncbi Rhizobium etli CFN 420
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139411
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30001
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a1
PSP56811 Psychrobacter sp.0
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMOB403833 ncbi Petrotoga mobilis SJ950
PMEN399739 ncbi Pseudomonas mendocina ymp0
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PINT246198 Prevotella intermedia 170
PING357804 ncbi Psychromonas ingrahamii 370
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PFLU220664 ncbi Pseudomonas fluorescens Pf-50
PFLU216595 ncbi Pseudomonas fluorescens SBW250
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PARC259536 ncbi Psychrobacter arcticus 273-40
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8310
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSP35761 Nocardioides sp.1
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16220
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP400668 ncbi Marinomonas sp. MWYL10
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM205914 ncbi Haemophilus somnus 129PT1
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HCHE349521 ncbi Hahella chejuensis KCTC 23960
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-20
GOXY290633 ncbi Gluconobacter oxydans 621H0
GKAU235909 ncbi Geobacillus kaustophilus HTA4260
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DRAD243230 ncbi Deinococcus radiodurans R10
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDIF272563 ncbi Clostridium difficile 6300
CCUR360105 ncbi Campylobacter curvus 525.921
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80520
CAULO ncbi Caulobacter crescentus CB150
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
CABO218497 ncbi Chlamydophila abortus S26/30
BWEI315730 ncbi Bacillus weihenstephanensis KBAB40
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHU412694 ncbi Bacillus thuringiensis Al Hakam0
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-270
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSUI470137 ncbi Brucella suis ATCC 234450
BSUI204722 ncbi Brucella suis 13300
BSUB ncbi Bacillus subtilis subtilis 1680
BSP376 Bradyrhizobium sp.0
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPUM315750 ncbi Bacillus pumilus SAFR-0320
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23080
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M0
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145800
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BHAL272558 ncbi Bacillus halodurans C-1250
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCLA66692 ncbi Bacillus clausii KSM-K160
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1020
BCER405917 Bacillus cereus W0
BCER315749 ncbi Bacillus cytotoxicus NVH 391-980
BCER288681 ncbi Bacillus cereus E33L0
BCER226900 ncbi Bacillus cereus ATCC 145790
BCAN483179 ncbi Brucella canis ATCC 233650
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02480
BANT568206 ncbi Bacillus anthracis CDC 6840
BANT261594 ncbi Bacillus anthracis Ames Ancestor0
BANT260799 ncbi Bacillus anthracis Sterne0
BAMY326423 ncbi Bacillus amyloliquefaciens FZB420
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9410
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP1667 Arthrobacter sp.0
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K11
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG10
AMET293826 ncbi Alkaliphilus metalliredigens QYMF1
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
AAVE397945 ncbi Acidovorax citrulli AAC00-10
AAUR290340 ncbi Arthrobacter aurescens TC10


Names of the homologs of the genes in the group in each of these orgs
  EG11857   EG11856   EG11229   EG11228   
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTUR377629
TTHE300852
TTHE262724
TTEN273068
TSP28240
TSP1755
TPSE340099
TPET390874
TPAL243276
TMAR243274
TLET416591
TFUS269800
TERY203124
TELO197221
TDEN326298
TDEN243275
TCRU317025
TACI273075
STRO369723
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP387093
SSP321332
SSP321327
SSP1148
SSP1131
SSOL273057
SSAP342451
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SHAE279808
SGOR29390
SGLO343509
SEPI176280
SEPI176279
SELO269084
SDEN318161
SDEG203122 SDE_2352
SCO
SAVE227882 SAV6625
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037
SALA317655
SAGA211110
SAGA208435
SAGA205921
SACI330779
RTYP257363
RSPH349102
RSPH349101
RSPH272943
RSP357808 ROSERS_1792
RSP101510 RHA1_RO11226
RSAL288705
RRUB269796
RRIC452659
RRIC392021
RPRO272947
RPAL316058
RPAL316057
RPAL316056
RPAL316055
RPAL258594
RMAS416276
RLEG216596
RFEL315456
RETL347834
RCON272944
RCAS383372 RCAS_2172
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PSYR223283 PSPTO_3601
PSYR205918 PSYR_3372
PSP56811
PSP117
PRUM264731
PPEN278197
PMOB403833
PMEN399739
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PINT246198
PING357804
PHOR70601
PHAL326442
PGIN242619
PFUR186497
PFLU220664
PFLU216595
PDIS435591
PCRY335284
PCAR338963
PATL342610
PAST100379
PARC259536
PABY272844
OTSU357244
OIHE221109
NWIN323098
NSP387092 NIS_1818
NSP35761 NOCA_2933
NSP103690
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NGON242231
NFAR247156
NEUT335283
NEUR228410
NARO279238
MXAN246197
MVAN350058
MTUB419947
MTUB336982
MTHE349307
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP400668
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407
MMAR267377
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MFLA265072
MCAP340047
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243 MAV_0423
MART243272
MAQU351348
MAER449447
MAEO419665
MACE188937
MABS561007
LXYL281090
LWEL386043
LSPH444177
LSAK314315
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LPLA220668
LMON265669
LMON169963
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT363253
LINT267671
LINT189518
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
ILOI283942
IHOS453591
HWAL362976
HSP64091
HSOM205914 HS_0899
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032
HMUK485914
HMOD498761
HMAR272569
HCHE349521
HAUR316274
HACI382638
GVIO251221
GTHE420246
GOXY290633
GKAU235909
GFOR411154
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855 FRANEAN1_6516
FSP106370
FRANT
FPHI484022
FNUC190304
FNOD381764
FMAG334413
FJOH376686
FALN326424
ERUM302409
ERUM254945
ELIT314225
EFAE226185
ECHA205920
ECAN269484
DRAD243230
DNOD246195
DGEO319795
CVES412965
CTRA471473
CTRA471472
CTET212717
CTEP194439
CSUL444179
CSP78
CRUT413404
CPSY167879
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPER289380
CPER195103
CPER195102
CPEL335992
CNOV386415
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKLU431943
CJEI306537
CJAP155077
CHUT269798
CGLU196627
CFEL264202
CEFF196164
CDIP257309
CDIF272563
CCUR360105 CCV52592_1778
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT536232
CBOT515621
CBOT508765
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CBLO291272
CBLO203907
CBEI290402
CAULO
CACE272562
CABO218497
BWEI315730
BTUR314724
BTRI382640
BTHU412694
BTHU281309
BTHE226186
BSUI470137
BSUI204722
BSUB
BSP376
BSP107806
BQUI283165
BPUM315750
BOVI236
BMEL359391
BMEL224914
BLON206672
BLIC279010
BHER314723
BHEN283166
BHAL272558
BGAR290434
BFRA295405
BFRA272559
BCLA66692
BCIC186490
BCER572264
BCER405917
BCER315749
BCER288681
BCER226900
BCAN483179
BBUR224326
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BANT592021
BANT568206
BANT261594
BANT260799
BAMY326423
BAFZ390236
BABO262698
AYEL322098
AVAR240292
AURANTIMONAS
ASP62977
ASP1667
APHA212042
APER272557 APE2605
AORE350688
ANAE240017
AMET293826 AMET_1331
AMAR329726
AMAR234826
ALAI441768
AFUL224325
AFER243159
ACEL351607
ABUT367737
ABOR393595
AAVE397945
AAUR290340


Organism features enriched in list (features available for 398 out of the 429 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00403657392
Disease:Gastroenteritis 0.0001007213
Endospores:No 0.0015335159211
Endospores:Yes 0.00023604753
GC_Content_Range4:0-40 2.027e-25198213
GC_Content_Range4:40-60 4.708e-7126224
GC_Content_Range4:60-100 9.086e-873145
GC_Content_Range7:0-30 6.416e-94747
GC_Content_Range7:30-40 1.482e-15151166
GC_Content_Range7:50-60 1.610e-750107
GC_Content_Range7:60-70 8.122e-866134
Genome_Size_Range5:0-2 4.287e-10135155
Genome_Size_Range5:2-4 1.650e-7161197
Genome_Size_Range5:4-6 3.529e-1781184
Genome_Size_Range5:6-10 0.00028192147
Genome_Size_Range9:0-1 0.00002502727
Genome_Size_Range9:1-2 2.128e-6108128
Genome_Size_Range9:2-3 0.0000184100120
Genome_Size_Range9:3-4 0.00855606177
Genome_Size_Range9:4-5 8.634e-94196
Genome_Size_Range9:5-6 8.309e-74088
Genome_Size_Range9:6-8 0.00036781638
Gram_Stain:Gram_Neg 8.630e-16184333
Gram_Stain:Gram_Pos 1.058e-12135150
Habitat:Host-associated 0.0011781156206
Habitat:Multiple 0.0005211105178
Motility:No 2.346e-8129151
Motility:Yes 1.181e-8151267
Optimal_temp.:30-37 0.00091521818
Oxygen_Req:Aerobic 0.0004162143185
Oxygen_Req:Facultative 0.0000656117201
Oxygen_Req:Microaerophilic 0.0017078618
Shape:Coccus 9.284e-87582
Shape:Rod 6.413e-9206347
Shape:Sphere 0.00569401819



Back to top


ORGANISMS ENRICHED FOR GROUP:




Back to top


ORGANISMS DEPLETED FOR GROUP:




Back to top


PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-901 (selenocysteine biosynthesis I (bacteria))2301110.5202
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181070.5138
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176940.5064
AST-PWY (arginine degradation II (AST pathway))120750.5038
GALACTITOLCAT-PWY (galactitol degradation)73560.5036
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)195960.4752
ECASYN-PWY (enterobacterial common antigen biosynthesis)191940.4678
GLYCOCAT-PWY (glycogen degradation I)2461080.4624
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251020.4570
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149800.4564
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001180.4430
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50400.4323
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45370.4236
PWY-46 (putrescine biosynthesis III)138720.4143
PWY-1269 (CMP-KDO biosynthesis I)3251190.4100
PWY0-1182 (trehalose degradation II (trehalase))70470.4077
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81510.4032
PWY-5913 (TCA cycle variation IV)3011130.4017



Back to top


PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11856   EG11229   EG11228   
EG118570.9995350.9993340.999807
EG118560.9998040.999359
EG112290.999524
EG11228



Back to top


PAIRWISE BLAST SCORES:

  EG11857   EG11856   EG11229   EG11228   
EG118570.0f0--5.9e-124
EG11856-0.0f02.4e-56-
EG11229-4.4e-480.0f0-
EG112281.7e-128--0.0f0



Back to top


PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- FORMATEDEHYDROGO-CPLX (formate dehydrogenase-O) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.500, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9997 0.9994 EG11856 (fdoI) FDOI-MONOMER (formate dehydrogenase-O, γ subunit)
   *in cand* 0.9997 0.9993 EG11857 (fdoH) FDOH-MONOMER (formate dehydrogenase-O, β subunit)
                NIL    NIL EG11858 (fdoG) FDOG-MONOMER (formate dehydrogenase-O, α subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9994 EG11228 (fdnH) FDNH-MONOMER (formate dehydrogenase N, β subunit)
   *in cand* 0.9997 0.9993 EG11229 (fdnI) FDNI-MONOMER (formate dehydrogenase N, γ subunit)

- ALPHA-SUBUNIT-CPLX (trimer complex of formate dehydrogenase-N α, β and γ subunits) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.500, average score: 1.000)
  Genes in pathway or complex:
                NIL    NIL EG11227 (fdnG) FDNG-MONOMER (formate dehydrogenase N, α subunit)
   *in cand* 0.9997 0.9994 EG11228 (fdnH) FDNH-MONOMER (formate dehydrogenase N, β subunit)
   *in cand* 0.9997 0.9993 EG11229 (fdnI) FDNI-MONOMER (formate dehydrogenase N, γ subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9994 EG11856 (fdoI) FDOI-MONOMER (formate dehydrogenase-O, γ subunit)
   *in cand* 0.9997 0.9993 EG11857 (fdoH) FDOH-MONOMER (formate dehydrogenase-O, β subunit)

- PWY0-1355 (formate to trimethylamine N-oxide electron transfer) (degree of match pw to cand: 0.400, degree of match cand to pw: 1.000, average score: 0.730)
  Genes in pathway or complex:
   *in cand* 0.9997 0.9993 EG11229 (fdnI) FDNI-MONOMER (formate dehydrogenase N, γ subunit)
   *in cand* 0.9997 0.9994 EG11228 (fdnH) FDNH-MONOMER (formate dehydrogenase N, β subunit)
                NIL    NIL EG11227 (fdnG) FDNG-MONOMER (formate dehydrogenase N, α subunit)
   *in cand* 0.9997 0.9994 EG11856 (fdoI) FDOI-MONOMER (formate dehydrogenase-O, γ subunit)
   *in cand* 0.9997 0.9993 EG11857 (fdoH) FDOH-MONOMER (formate dehydrogenase-O, β subunit)
                NIL    NIL EG11858 (fdoG) FDOG-MONOMER (formate dehydrogenase-O, α subunit)
             0.5764 0.3292 G7023 (torY) G7023-MONOMER (trimethylamine N-oxide reductase III, c-type cytochrome subunit)
             0.4801 0.2764 G7022 (torZ) G7022-MONOMER (trimethylamine N-oxide reductase III, TorZ subunit)
             0.4610 0.2001 EG11814 (torA) TORA-MONOMER (trimethylamine N-oxide reductase, catalytic subunit)
             0.5953 0.4588 EG11815 (torC) EG11815-MONOMER (TorC trimethylamine N-oxide reductase, cytochrome c-type subunit)
  All candidate genes found in this pathway

- FORMATEDEHYDROGN-CPLX (formate dehydrogenase-N) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.500, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9997 0.9993 EG11229 (fdnI) FDNI-MONOMER (formate dehydrogenase N, γ subunit)
   *in cand* 0.9997 0.9994 EG11228 (fdnH) FDNH-MONOMER (formate dehydrogenase N, β subunit)
                NIL    NIL EG11227 (fdnG) FDNG-MONOMER (formate dehydrogenase N, α subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9994 EG11856 (fdoI) FDOI-MONOMER (formate dehydrogenase-O, γ subunit)
   *in cand* 0.9997 0.9993 EG11857 (fdoH) FDOH-MONOMER (formate dehydrogenase-O, β subunit)

- PWY0-1321 (formate to nitrate electron transfer) (degree of match pw to cand: 0.333, degree of match cand to pw: 1.000, average score: 0.844)
  Genes in pathway or complex:
   *in cand* 0.9997 0.9993 EG11229 (fdnI) FDNI-MONOMER (formate dehydrogenase N, γ subunit)
   *in cand* 0.9997 0.9994 EG11228 (fdnH) FDNH-MONOMER (formate dehydrogenase N, β subunit)
                NIL    NIL EG11227 (fdnG) FDNG-MONOMER (formate dehydrogenase N, α subunit)
   *in cand* 0.9997 0.9994 EG11856 (fdoI) FDOI-MONOMER (formate dehydrogenase-O, γ subunit)
   *in cand* 0.9997 0.9993 EG11857 (fdoH) FDOH-MONOMER (formate dehydrogenase-O, β subunit)
                NIL    NIL EG11858 (fdoG) FDOG-MONOMER (formate dehydrogenase-O, α subunit)
             0.6634 0.3695 EG10638 (narG) NARG-MONOMER (nitrate reductase A, α subunit)
             0.8203 0.3342 EG10639 (narH) NARH-MONOMER (nitrate reductase A, β subunit)
             0.6165 0.2699 EG10640 (narI) NARI-MONOMER (nitrate reductase A, γ subunit)
             0.6360 0.2341 EG10644 (narV) NARV-MONOMER (nitrate reductase Z, γ subunit)
             0.6336 0.3193 EG10648 (narZ) NARZ-MONOMER (nitrate reductase Z, α subunit)
             0.8811 0.5764 EG10647 (narY) NARY-MONOMER (nitrate reductase Z, β subunit)
  All candidate genes found in this pathway

- PWY0-1356 (formate to dimethyl sulfoxide electron transfer) (degree of match pw to cand: 0.444, degree of match cand to pw: 1.000, average score: 0.903)
  Genes in pathway or complex:
   *in cand* 0.9997 0.9993 EG11229 (fdnI) FDNI-MONOMER (formate dehydrogenase N, γ subunit)
   *in cand* 0.9997 0.9994 EG11228 (fdnH) FDNH-MONOMER (formate dehydrogenase N, β subunit)
                NIL    NIL EG11227 (fdnG) FDNG-MONOMER (formate dehydrogenase N, α subunit)
   *in cand* 0.9997 0.9994 EG11856 (fdoI) FDOI-MONOMER (formate dehydrogenase-O, γ subunit)
   *in cand* 0.9997 0.9993 EG11857 (fdoH) FDOH-MONOMER (formate dehydrogenase-O, β subunit)
                NIL    NIL EG11858 (fdoG) FDOG-MONOMER (formate dehydrogenase-O, α subunit)
             0.7795 0.5496 EG10234 (dmsC) DMSC-MONOMER (dimethyl sulfoxide reductase, chain C)
             0.9985 0.9976 EG10233 (dmsB) DMSB-MONOMER (dimethyl sulfoxide reductase, chain B)
             0.7160 0.2655 EG10232 (dmsA) DMSA-MONOMER (dimethyl sulfoxide reductase, chain A)
  All candidate genes found in this pathway



Back to top


GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11228 EG11229 (centered at EG11229)
EG11856 EG11857 (centered at EG11857)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG11857   EG11856   EG11229   EG11228   
166/623167/623157/623164/623
AAEO224324:0:Tyes0110
ABAC204669:0:Tyes0110
ABAU360910:0:Tyes0110
ACAU438753:0:Tyes1001
ACRY349163:8:Tyes0--0
ADEH290397:0:Tyes0110
AEHR187272:0:Tyes38400384
AHYD196024:0:Tyes05255250
AMET293826:0:Tyes---0
APER272557:0:Tyes---0
APLE416269:0:Tyes0110
APLE434271:0:Tno0110
ASAL382245:5:Tyes0--0
ASP232721:2:Tyes010041004-
ASP62928:0:Tyes-00-
ASP76114:2:Tyes760076
BAMB339670:2:Tno0110
BAMB398577:2:Tno0110
BBRO257310:0:Tyes-00-
BCEN331271:1:Tno1001
BCEN331272:2:Tyes0110
BJAP224911:0:Fyes-00-
BMAL243160:0:Tno1001
BMAL320388:0:Tno0110
BMAL320389:0:Tyes0110
BPAR257311:0:Tno-00-
BPER257313:0:Tyes-00-
BPET94624:0:Tyes-00-
BPSE272560:0:Tyes1001
BPSE320372:0:Tno1001
BPSE320373:0:Tno1001
BSP36773:1:Tyes1001
BTHA271848:0:Tno0110
BVIE269482:6:Tyes0110
BXEN266265:1:Tyes0110
CCON360104:2:Tyes-00-
CCUR360105:0:Tyes-0--
CDES477974:0:Tyes0--0
CFET360106:0:Tyes-00-
CHOM360107:1:Tyes-00-
CHYD246194:0:Tyes0110
CJEJ192222:0:Tyes-00-
CJEJ195099:0:Tno-00-
CJEJ354242:2:Tyes7000-
CJEJ360109:0:Tyes-00-
CJEJ407148:0:Tno7200-
CKOR374847:0:Tyes0--0
CSAL290398:0:Tyes-00-
CSP501479:2:Fyes-00-
CSP501479:7:Fyes0--0
CVIO243365:0:Tyes0110
DARO159087:0:Tyes1001
DDES207559:0:Tyes390-39
DETH243164:0:Tyes0--0
DHAF138119:0:Tyes1001
DOLE96561:0:Tyes0--0
DPSY177439:2:Tyes-00-
DRED349161:0:Tyes0--0
DSHI398580:5:Tyes74200742
DSP216389:0:Tyes0--0
DSP255470:0:Tno0--0
DVUL882:1:Tyes0--0
ECAR218491:0:Tyes1001
ECOL199310:0:Tno2895289410
ECOL316407:0:Tno1894189510
ECOL331111:6:Tno2659265810
ECOL362663:0:Tno2625262410
ECOL364106:1:Tno2773277210
ECOL405955:2:Tyes2501250002501
ECOL409438:6:Tyes2673267210
ECOL413997:0:Tno2369236810
ECOL439855:4:Tno2495249401
ECOL469008:0:Tno1965196601
ECOL481805:0:Tno1958195901
ECOL585034:0:Tno2569256810
ECOL585035:0:Tno2682268110
ECOL585055:0:Tno2717271610
ECOL585056:2:Tno2686268510
ECOL585057:0:Tno1357135810
ECOL585397:0:Tno2897289610
ECOL83334:0:Tno2820281910
ECOLI:0:Tno2463246210
ECOO157:0:Tno2931293001
EFER585054:1:Tyes2376237710
ESP42895:1:Tyes2057205801
FSP1855:0:Tyes-0--
GMET269799:1:Tyes0--0
GSUL243231:0:Tyes0--0
GURA351605:0:Tyes1001
HARS204773:0:Tyes1826001826
HBUT415426:0:Tyes01-0
HDUC233412:0:Tyes06776770
HHAL349124:0:Tyes7710-771
HHEP235279:0:Tyes-00-
HINF281310:0:Tyes0110
HINF374930:0:Tyes1001
HINF71421:0:Tno0110
HSOM205914:1:Tyes0---
HSOM228400:0:Tno0--0
JSP290400:1:Tyes0--0
JSP375286:0:Tyes-00-
KPNE272620:2:Tyes2529252801
KRAD266940:2:Fyes0--0
LCHO395495:0:Tyes-00-
MAVI243243:0:Tyes---0
MCAP243233:0:Tyes1001
MEXT419610:0:Tyes-00-
MLOT266835:2:Tyes0--0
MMAG342108:0:Tyes0102510250
MPET420662:1:Tyes03133130
MSME246196:0:Tyes0--0
MSP164756:1:Tno0--0
MSP164757:0:Tno0--0
MSP189918:2:Tyes0--0
MSP266779:3:Tyes-00-
MSP409:2:Tyes2654002654
MSUC221988:0:Tyes1420141142
MTHE264732:0:Tyes01-0
NHAM323097:2:Tyes-00-
NSP35761:1:Tyes---0
NSP387092:0:Tyes0---
OANT439375:4:Tyes0110
OCAR504832:0:Tyes1605110
PACN267747:0:Tyes0--0
PAER178306:0:Tyes0--0
PAER208963:0:Tyes1001
PAER208964:0:Tno1001
PARS340102:0:Tyes0--0
PENT384676:0:Tyes0110
PFLU205922:0:Tyes0110
PISL384616:0:Tyes0--0
PLUM243265:0:Fyes0110
PMUL272843:1:Tyes1001
PNAP365044:8:Tyes-00-
PPRO298386:2:Tyes-00-
PPUT160488:0:Tno0110
PPUT351746:0:Tyes0110
PPUT76869:0:Tno0110
PSP296591:2:Tyes-00-
PSP312153:0:Tyes-00-
PSTU379731:0:Tyes1001
PSYR205918:0:Tyes-0--
PSYR223283:2:Tyes-0--
PTHE370438:0:Tyes09989980
RCAS383372:0:Tyes0---
RDEN375451:4:Tyes0180318030
REUT264198:3:Tyes-00-
REUT381666:1:Tyes0110
RFER338969:1:Tyes83100831
RMET266264:2:Tyes-00-
RPOM246200:1:Tyes1724001724
RSOL267608:1:Tyes-00-
RSP101510:0:Fyes---0
RSP357808:0:Tyes0---
RXYL266117:0:Tyes0--0
SACI56780:0:Tyes2266002266
SAVE227882:1:Fyes-0--
SBAL399599:3:Tyes0110
SBAL402882:1:Tno0110
SBOY300268:1:Tyes2210220901
SDEG203122:0:Tyes---0
SDYS300267:1:Tyes2094209510
SENT209261:0:Tno0110
SENT220341:0:Tno0110
SENT295319:0:Tno2479247810
SENT321314:2:Tno2400239901
SENT454169:2:Tno2508250701
SERY405948:0:Tyes0--0
SFLE198214:0:Tyes2153215201
SFLE373384:0:Tno1764176501
SFUM335543:0:Tyes0--0
SHAL458817:0:Tyes0110
SHIGELLA:0:Tno1655165601
SLAC55218:1:Fyes0167516750
SLOI323850:0:Tyes318900-
SMED366394:1:Tyes-00-
SMEL266834:0:Tyes0110
SONE211586:1:Tyes0110
SPEA398579:0:Tno0110
SPRO399741:1:Tyes0110
SSED425104:0:Tyes145166816680
SSON300269:1:Tyes2289228801
SSP292414:2:Tyes-00-
SSP644076:7:Fyes-00-
SSP94122:1:Tyes2053205420540
STHE292459:0:Tyes3088003088
STYP99287:1:Tyes2454245301
SWOL335541:0:Tyes1100301
TDEN292415:0:Tyes0--0
TKOD69014:0:Tyes0--0
TPEN368408:1:Tyes0--0
TROS309801:1:Tyes0--0
VCHO:0:Tyes-00-
VCHO345073:1:Tno-00-
VEIS391735:1:Tyes0--0
VFIS312309:1:Tyes0--0
VFIS312309:2:Tyes-0--
VPAR223926:1:Tyes41200412
VVUL196600:2:Tyes04484480
VVUL216895:1:Tno41600416
WSUC273121:0:Tyes01951950
XAUT78245:1:Tyes1001
YENT393305:1:Tyes1001
YPES187410:5:Tno1001
YPES214092:3:Tno1001
YPES349746:2:Tno1001
YPES360102:3:Tyes0110
YPES377628:2:Tno1001
YPES386656:2:Tno0110
YPSE273123:2:Tno0110
YPSE349747:2:Tno1001



Back to top