CANDIDATE ID: 321

CANDIDATE ID: 321

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9967700e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.8500000e-7

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7507 (ygfU) (b2888)
   Products of gene:
     - YGFU-MONOMER (YgfU NCS2 transporter)

- G7501 (xanQ) (b2882)
   Products of gene:
     - YGFO-MONOMER (XanQ xanthine NCS2 transporter)
       Reactions:
        xanthine[periplasmic space] + H+[periplasmic space]  ->  xanthine[cytosol] + H+[cytosol]

- G6282 (ybbY) (b0513)
   Products of gene:
     - G6282-MONOMER (predicted uracil/xanthine transporter)

- EG11194 (xanP) (b3654)
   Products of gene:
     - YICE-MONOMER (XanP xanthine NCS2 transporter)
       Reactions:
        xanthine[periplasmic space] + H+[periplasmic space]  ->  xanthine[cytosol] + H+[cytosol]



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 251
Effective number of orgs (counting one per cluster within 468 clusters): 160

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XAUT78245 ncbi Xanthobacter autotrophicus Py24
VVUL216895 ncbi Vibrio vulnificus CMCP63
VVUL196600 ncbi Vibrio vulnificus YJ0163
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106333
VFIS312309 ncbi Vibrio fischeri ES1143
VCHO345073 ncbi Vibrio cholerae O3953
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169613
TKOD69014 ncbi Thermococcus kodakarensis KOD14
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
SSP644076 Silicibacter sp. TrichCH4B4
SSP292414 ncbi Ruegeria sp. TM10404
SSON300269 ncbi Shigella sonnei Ss0464
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153054
SPYO370554 ncbi Streptococcus pyogenes MGAS107504
SPYO370553 ncbi Streptococcus pyogenes MGAS20964
SPYO370552 ncbi Streptococcus pyogenes MGAS102703
SPYO370551 ncbi Streptococcus pyogenes MGAS94293
SPYO319701 ncbi Streptococcus pyogenes MGAS61803
SPYO293653 ncbi Streptococcus pyogenes MGAS50054
SPYO286636 ncbi Streptococcus pyogenes MGAS103944
SPYO198466 ncbi Streptococcus pyogenes MGAS3154
SPYO193567 ncbi Streptococcus pyogenes SSI-14
SPYO160490 ncbi Streptococcus pyogenes M1 GAS3
SPRO399741 ncbi Serratia proteamaculans 5684
SPNE488221 ncbi Streptococcus pneumoniae 705853
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-63
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-143
SPNE171101 ncbi Streptococcus pneumoniae R63
SPNE170187 ncbi Streptococcus pneumoniae G543
SPNE1313 Streptococcus pneumoniae3
SMEL266834 ncbi Sinorhizobium meliloti 10213
SMED366394 ncbi Sinorhizobium medicae WSM4193
SLAC55218 Ruegeria lacuscaerulensis3
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14354
SGOR29390 Streptococcus gordonii Challis4
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23383
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122284
SEPI176279 ncbi Staphylococcus epidermidis RP62A4
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SCO ncbi Streptomyces coelicolor A3(2)3
SBOY300268 ncbi Shigella boydii Sb2274
SAVE227882 ncbi Streptomyces avermitilis MA-46803
SAUR93062 ncbi Staphylococcus aureus aureus COL3
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83253
SAUR426430 ncbi Staphylococcus aureus aureus Newman3
SAUR418127 ncbi Staphylococcus aureus aureus Mu34
SAUR367830 Staphylococcus aureus aureus USA3003
SAUR359787 ncbi Staphylococcus aureus aureus JH14
SAUR359786 ncbi Staphylococcus aureus aureus JH94
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4764
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2524
SAUR273036 ncbi Staphylococcus aureus RF1224
SAUR196620 ncbi Staphylococcus aureus aureus MW24
SAUR158879 ncbi Staphylococcus aureus aureus N3154
SAUR158878 ncbi Staphylococcus aureus aureus Mu504
SAGA211110 ncbi Streptococcus agalactiae NEM3164
SAGA208435 ncbi Streptococcus agalactiae 2603V/R4
SAGA205921 ncbi Streptococcus agalactiae A9094
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99413
RSP101510 ncbi Rhodococcus jostii RHA14
RSOL267608 ncbi Ralstonia solanacearum GMI10003
RPOM246200 ncbi Ruegeria pomeroyi DSS-33
RMET266264 ncbi Ralstonia metallidurans CH344
REUT381666 ncbi Ralstonia eutropha H164
REUT264198 ncbi Ralstonia eutropha JMP1344
RDEN375451 ncbi Roseobacter denitrificans OCh 1144
PTHE370438 ncbi Pelotomaculum thermopropionicum SI3
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30003
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a3
PPUT76869 ncbi Pseudomonas putida GB-13
PPUT351746 ncbi Pseudomonas putida F13
PPUT160488 ncbi Pseudomonas putida KT24403
PPRO298386 ncbi Photobacterium profundum SS94
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257454
PMOB403833 ncbi Petrotoga mobilis SJ953
PMEN399739 ncbi Pseudomonas mendocina ymp3
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PINT246198 Prevotella intermedia 173
PGIN242619 ncbi Porphyromonas gingivalis W833
PFUR186497 ncbi Pyrococcus furiosus DSM 36384
PFLU220664 ncbi Pseudomonas fluorescens Pf-53
PFLU216595 ncbi Pseudomonas fluorescens SBW253
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L483
PDIS435591 ncbi Parabacteroides distasonis ATCC 85033
PCRY335284 ncbi Psychrobacter cryohalolentis K53
PATL342610 ncbi Pseudoalteromonas atlantica T6c3
PAER208964 ncbi Pseudomonas aeruginosa PAO13
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA143
PABY272844 ncbi Pyrococcus abyssi GE53
OIHE221109 ncbi Oceanobacillus iheyensis HTE8313
OANT439375 ncbi Ochrobactrum anthropi ATCC 491883
NMEN374833 ncbi Neisseria meningitidis 0534423
NMEN272831 ncbi Neisseria meningitidis FAM183
NMEN122587 ncbi Neisseria meningitidis Z24913
NMEN122586 ncbi Neisseria meningitidis MC583
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-13
MTHE264732 ncbi Moorella thermoacetica ATCC 390734
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSP409 Methylobacterium sp.3
MSME246196 ncbi Mycobacterium smegmatis MC2 1553
MPET420662 ncbi Methylibium petroleiphilum PM13
MMAR444158 ncbi Methanococcus maripaludis C63
MMAR426368 ncbi Methanococcus maripaludis C73
MMAR402880 ncbi Methanococcus maripaludis C53
MMAR267377 ncbi Methanococcus maripaludis S23
MEXT419610 ncbi Methylobacterium extorquens PA14
MABS561007 ncbi Mycobacterium abscessus ATCC 199773
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53344
LSPH444177 ncbi Lysinibacillus sphaericus C3-413
LSAK314315 ncbi Lactobacillus sakei sakei 23K3
LREU557436 ncbi Lactobacillus reuteri DSM 200164
LPLA220668 ncbi Lactobacillus plantarum WCFS13
LMON265669 ncbi Listeria monocytogenes 4b F23654
LMON169963 ncbi Listeria monocytogenes EGD-e4
LLAC272623 ncbi Lactococcus lactis lactis Il14034
LLAC272622 ncbi Lactococcus lactis cremoris SK114
LJOH257314 ncbi Lactobacillus johnsonii NCC 5334
LINN272626 ncbi Listeria innocua Clip112624
LHEL405566 ncbi Lactobacillus helveticus DPC 45714
LGAS324831 ncbi Lactobacillus gasseri ATCC 333234
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118424
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3654
LCHO395495 ncbi Leptothrix cholodnii SP-64
LCAS321967 ncbi Lactobacillus casei ATCC 3344
LBRE387344 ncbi Lactobacillus brevis ATCC 3674
LACI272621 ncbi Lactobacillus acidophilus NCFM4
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP375286 ncbi Janthinobacterium sp. Marseille4
JSP290400 ncbi Jannaschia sp. CCS13
HWAL362976 ncbi Haloquadratum walsbyi DSM 167904
HMAR272569 ncbi Haloarcula marismortui ATCC 430494
HDUC233412 ncbi Haemophilus ducreyi 35000HP4
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-23
GOXY290633 ncbi Gluconobacter oxydans 621H3
GBET391165 ncbi Granulibacter bethesdensis CGDNIH13
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S853
FMAG334413 ncbi Finegoldia magna ATCC 293284
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
EFAE226185 ncbi Enterococcus faecalis V5834
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DSHI398580 ncbi Dinoroseobacter shibae DFL 123
DRAD243230 ncbi Deinococcus radiodurans R14
DPSY177439 ncbi Desulfotalea psychrophila LSv544
DGEO319795 ncbi Deinococcus geothermalis DSM 113003
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G204
CSP501479 Citreicella sp. SE454
CSAL290398 ncbi Chromohalobacter salexigens DSM 30433
CPSY167879 ncbi Colwellia psychrerythraea 34H3
CPHY357809 ncbi Clostridium phytofermentans ISDg3
CPER289380 ncbi Clostridium perfringens SM1014
CPER195103 ncbi Clostridium perfringens ATCC 131244
CPER195102 ncbi Clostridium perfringens 134
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130323
CEFF196164 ncbi Corynebacterium efficiens YS-3143
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131293
CDIF272563 ncbi Clostridium difficile 6304
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto3
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6573
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B4
CBOT498213 ncbi Clostridium botulinum B1 str. Okra3
CBOT441772 ncbi Clostridium botulinum F str. Langeland3
CBOT441771 ncbi Clostridium botulinum A str. Hall3
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193973
CBOT36826 Clostridium botulinum A3
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80524
CACE272562 ncbi Clostridium acetobutylicum ATCC 8243
BWEI315730 ncbi Bacillus weihenstephanensis KBAB44
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTHU412694 ncbi Bacillus thuringiensis Al Hakam4
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-274
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54823
BTHA271848 ncbi Burkholderia thailandensis E2644
BSUB ncbi Bacillus subtilis subtilis 1684
BSP376 Bradyrhizobium sp.3
BSP36773 Burkholderia sp.4
BPUM315750 ncbi Bacillus pumilus SAFR-0324
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BLON206672 ncbi Bifidobacterium longum NCC27053
BLIC279010 ncbi Bacillus licheniformis ATCC 145804
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1103
BFRA295405 ncbi Bacteroides fragilis YCH463
BFRA272559 ncbi Bacteroides fragilis NCTC 93433
BCER572264 ncbi Bacillus cereus 03BB1024
BCER405917 Bacillus cereus W4
BCER315749 ncbi Bacillus cytotoxicus NVH 391-984
BCER288681 ncbi Bacillus cereus E33L4
BCER226900 ncbi Bacillus cereus ATCC 145794
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BANT592021 ncbi Bacillus anthracis A02484
BANT568206 ncbi Bacillus anthracis CDC 6844
BANT261594 ncbi Bacillus anthracis Ames Ancestor4
BANT260799 ncbi Bacillus anthracis Sterne4
BAMY326423 ncbi Bacillus amyloliquefaciens FZB424
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
ASP62977 ncbi Acinetobacter sp. ADP14
ASP232721 ncbi Acidovorax sp. JS424
ASP1667 Arthrobacter sp.3
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4493
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AMET293826 ncbi Alkaliphilus metalliredigens QYMF4
AHYD196024 Aeromonas hydrophila dhakensis4
ACAU438753 ncbi Azorhizobium caulinodans ORS 5714
ABAU360910 ncbi Bordetella avium 197N4
AAUR290340 ncbi Arthrobacter aurescens TC13


Names of the homologs of the genes in the group in each of these orgs
  G7507   G7501   G6282   EG11194   
YPSE349747 YPSIP31758_0034YPSIP31758_0034YPSIP31758_0034YPSIP31758_0034
YPSE273123 YPTB0031YPTB0031YPTB0031YPTB0031
YPES386656 YPDSF_3871YPDSF_3871YPDSF_3871YPDSF_3871
YPES377628 YPN_3816YPN_3816YPN_3816YPN_3816
YPES360102 YPA_3508YPA_3508YPA_3508YPA_3508
YPES349746 YPANGOLA_A0039YPANGOLA_A0039YPANGOLA_A0039YPANGOLA_A0039
YPES214092 YPO0034YPO0034YPO0034YPO0034
YPES187410 Y0107Y0107Y0107Y0107
YENT393305 YE0041YE0041YE1129YE0041
XAUT78245 XAUT_3292XAUT_3292XAUT_2628XAUT_3292
VVUL216895 VV1_0856VV1_0856VV1_0856
VVUL196600 VV0238VV0238VV0238
VPAR223926 VP0156VP0156VP0156
VFIS312309 VF0116VF0116VF0116
VCHO345073 VC0395_A2284VC0395_A2284VC0395_A2284
VCHO VC2712VC2712VC2712
TKOD69014 TK1212TK1212TK1212TK1212
STYP99287 STM3747STM3747STM0524STM3747
SSP644076 SCH4B_0964SCH4B_0964SCH4B_0964SCH4B_0964
SSP292414 TM1040_3473TM1040_3473TM1040_3473TM1040_3473
SSON300269 SSO_3041SSO_3751SSO_3751SSO_3751
SSAP342451 SSP2324SSP2324SSP2324SSP2324
SPYO370554 MGAS10750_SPY1008MGAS10750_SPY1008MGAS10750_SPY1008MGAS10750_SPY1008
SPYO370553 MGAS2096_SPY0933MGAS2096_SPY0933MGAS2096_SPY0933MGAS2096_SPY0933
SPYO370552 MGAS10270_SPY0973MGAS10270_SPY0973MGAS10270_SPY0973
SPYO370551 MGAS9429_SPY0976MGAS9429_SPY0976MGAS9429_SPY0976
SPYO319701 M28_SPY0833M28_SPY0833M28_SPY0833
SPYO293653 M5005_SPY0859M5005_SPY0859M5005_SPY0859M5005_SPY0859
SPYO286636 M6_SPY0855M6_SPY0855M6_SPY0855M6_SPY0855
SPYO198466 SPYM3_0795SPYM3_0795SPYM3_0795SPYM3_0795
SPYO193567 SPS0994SPS0994SPS0994SPS0994
SPYO160490 SPY1137SPY1137SPY1137
SPRO399741 SPRO_4873SPRO_4873SPRO_3522SPRO_4873
SPNE488221 SP70585_1902SP70585_1902SP70585_1902
SPNE487214 SPH_1963SPH_1963SPH_1963
SPNE487213 SPT_1765SPT_1765SPT_1765
SPNE171101 SPR1663SPR1663SPR1663
SPNE170187 SPN02161SPN02161SPN02161
SPNE1313 SPJ_1753SPJ_1753SPJ_1753
SMEL266834 SMB20134SMC02513SMC02513
SMED366394 SMED_4001SMED_4001SMED_2911
SLAC55218 SL1157_0240SL1157_0240SL1157_0240
SHIGELLA YGFUYICEYICEYICE
SHAL458817 SHAL_0658SHAL_1373SHAL_0658SHAL_1373
SHAE279808 SH2584SH2584SH2584SH2584
SGOR29390 SGO_1157SGO_1157SGO_1157SGO_1157
SFLE373384 SFV_2936SFV_3875SFV_3875SFV_3875
SFLE198214 AAN44360.1AAN45141.1AAN45141.1AAN45141.1
SERY405948 SACE_6737SACE_6737SACE_6737
SEPI176280 SE_2349SE_2349SE_2349SE_2349
SEPI176279 SERP0068SERP0068SERP0068SERP0068
SENT454169 SEHA_C4073SEHA_C4073SEHA_C0631SEHA_C4073
SENT321314 SCH_3671SCH_3671SCH_0563SCH_3671
SENT295319 SPA3598SPA3598SPA2199SPA3598
SENT220341 STY4046STY4046STY0572STY4046
SENT209261 T3772T3772T2337T3772
SDYS300267 SDY_4086SDY_4086SDY_4086SDY_4086
SCO SCO6212SCO6212SCO6212
SBOY300268 SBO_3104SBO_3723SBO_3723SBO_3723
SAVE227882 SAV1508SAV1508SAV1508
SAUR93062 SACOL0459SACOL0459SACOL0459
SAUR93061 SAOUHSC_00373SAOUHSC_00373SAOUHSC_00373
SAUR426430 NWMN_0379NWMN_0379NWMN_0379
SAUR418127 SAHV_0386SAHV_0386SAHV_0386SAHV_0386
SAUR367830 SAUSA300_0387SAUSA300_0387SAUSA300_0387
SAUR359787 SAURJH1_0447SAURJH1_0447SAURJH1_0447SAURJH1_0447
SAUR359786 SAURJH9_0436SAURJH9_0436SAURJH9_0436SAURJH9_0436
SAUR282459 SAS0365SAS0365SAS0365SAS0365
SAUR282458 SAR0407SAR0407SAR0407SAR0407
SAUR273036 SAB0339SAB0339SAB0339SAB0339
SAUR196620 MW0365MW0365MW0365MW0365
SAUR158879 SA0374SA0374SA0374SA0374
SAUR158878 SAV0389SAV0389SAV0389SAV0389
SAGA211110 GBS1116GBS1116GBS1116GBS1116
SAGA208435 SAG_1085SAG_1085SAG_1085SAG_1085
SAGA205921 SAK_1170SAK_1170SAK_1170SAK_1170
RXYL266117 RXYL_2840RXYL_2840RXYL_2840
RSP101510 RHA1_RO01569RHA1_RO01569RHA1_RO01569RHA1_RO01569
RSOL267608 RSC2118RSC2118RSC2118
RPOM246200 SPO_0874SPO_0874SPO_0874
RMET266264 RMET_0883RMET_3725RMET_3725RMET_0883
REUT381666 H16_A1007H16_B1490H16_B1490H16_A1007
REUT264198 REUT_A2436REUT_A3080REUT_A3072REUT_A2436
RDEN375451 RD1_4153RD1_4153RD1_4153RD1_4153
PTHE370438 PTH_2271PTH_0868PTH_2271
PSYR223283 PSPTO_0772PSPTO_0772PSPTO_0772
PSYR205918 PSYR_0676PSYR_0676PSYR_0676
PPUT76869 PPUTGB1_3854PPUTGB1_3597PPUTGB1_3597
PPUT351746 PPUT_1578PPUT_1841PPUT_1841
PPUT160488 PP_4290PP_3992PP_3992
PPRO298386 PBPRA1931PBPRA0186PBPRA1931PBPRA0186
PPEN278197 PEPE_1835PEPE_1454PEPE_1835PEPE_1454
PMOB403833 PMOB_1726PMOB_1726PMOB_1726
PMEN399739 PMEN_0163PMEN_2762PMEN_2762
PLUM243265 PLU0247PLU0247PLU0247PLU0247
PINT246198 PIN_A2042PIN_A2042PIN_A2042
PGIN242619 PG_2148PG_2148PG_2148
PFUR186497 PF1240PF1240PF1240PF1240
PFLU220664 PFL_4371PFL_3157PFL_0731
PFLU216595 PFLU4364PFLU2710PFLU0673
PFLU205922 PFL_1701PFL_2573PFL_3433PFL_2573
PENT384676 PSEEN1681PSEEN2224PSEEN2224
PDIS435591 BDI_1503BDI_1503BDI_1503
PCRY335284 PCRYO_1300PCRYO_1913PCRYO_1913
PATL342610 PATL_2223PATL_2223PATL_2223
PAER208964 PA1507PA0352PA0352
PAER208963 PA14_44950PA14_04610PA14_04610
PABY272844 PAB1838PAB1838PAB1838
OIHE221109 OB1062OB1062OB1062
OANT439375 OANT_0967OANT_0967OANT_0967
NMEN374833 NMCC_0873NMCC_0873NMCC_0873
NMEN272831 NMC0908NMC0908NMC0908
NMEN122587 NMA1126NMA1126NMA1126
NMEN122586 NMB_0930NMB_0930NMB_0930
MVAN350058 MVAN_5275MVAN_5275MVAN_5275
MTHE264732 MOTH_2478MOTH_2118MOTH_2118MOTH_2478
MSUC221988 MS0575MS0575MS0575MS0575
MSP409 M446_5248M446_5248M446_5248
MSME246196 MSMEG_1293MSMEG_1293MSMEG_1293
MPET420662 MPE_A0781MPE_A0781MPE_A0781
MMAR444158 MMARC6_0206MMARC6_0206MMARC6_0206
MMAR426368 MMARC7_1705MMARC7_1705MMARC7_1705
MMAR402880 MMARC5_0895MMARC5_0895MMARC5_0895
MMAR267377 MMP0681MMP0681MMP0681
MEXT419610 MEXT_1691MEXT_1691MEXT_3343MEXT_1691
MABS561007 MAB_2932CMAB_2932CMAB_2932C
LWEL386043 LWE1903LWE1903LWE1903LWE1903
LSPH444177 BSPH_0744BSPH_0744BSPH_0744
LSAK314315 LSA0013LSA0013LSA0013
LREU557436 LREU_1828LREU_1828LREU_1828LREU_1828
LPLA220668 LP_2710LP_2710LP_2710
LMON265669 LMOF2365_1913LMOF2365_1913LMOF2365_1913LMOF2365_1913
LMON169963 LMO1884LMO1884LMO1884LMO1884
LLAC272623 L160092L160092L160092L160092
LLAC272622 LACR_1266LACR_1266LACR_1266LACR_1266
LJOH257314 LJ_0226LJ_0226LJ_0226LJ_0226
LINN272626 LIN1997LIN1997LIN1997LIN1997
LHEL405566 LHV_0252LHV_0252LHV_0252LHV_0252
LGAS324831 LGAS_0228LGAS_0228LGAS_0228LGAS_0228
LDEL390333 LDB0295LDB0295LDB0295LDB0295
LDEL321956 LBUL_0249LBUL_0249LBUL_0249LBUL_0249
LCHO395495 LCHO_1141LCHO_1141LCHO_1141LCHO_1141
LCAS321967 LSEI_1118LSEI_1118LSEI_1118LSEI_1118
LBRE387344 LVIS_1838LVIS_1838LVIS_1044LVIS_1838
LACI272621 LBA0239LBA0239LBA0239LBA0239
KPNE272620 GKPORF_B3374GKPORF_B3374GKPORF_B3374GKPORF_B3374
JSP375286 MMA_3675MMA_0226MMA_1239MMA_0226
JSP290400 JANN_2606JANN_2606JANN_2606
HWAL362976 HQ2096AHQ2096AHQ1934AHQ2096A
HMAR272569 PNG7256PNG7256RRNAC1444PNG7256
HDUC233412 HD_1811HD_1811HD_1811HD_1811
GTHE420246 GTNG_1398GTNG_1398GTNG_1398
GOXY290633 GOX0901GOX0901GOX0901
GBET391165 GBCGDNIH1_1636GBCGDNIH1_1636GBCGDNIH1_1636
FSUC59374 FSU2151FSU2151FSU2151
FMAG334413 FMG_1015FMG_1015FMG_1015FMG_1015
ESP42895 ENT638_0073ENT638_0073ENT638_0073ENT638_0073
EFER585054 EFER_3947EFER_3947EFER_3947EFER_3947
EFAE226185 EF_2364EF_2573EF_2364EF_2364
ECOO157 YGFUYGFOYBBYYICE
ECOL83334 ECS3760ECS3755ECS0575ECS4530
ECOL585397 ECED1_3347ECED1_3342ECED1_0532ECED1_4339
ECOL585057 ECIAI39_3303ECIAI39_3297ECIAI39_0476ECIAI39_4176
ECOL585056 ECUMN_3230ECUMN_3225ECUMN_0553ECUMN_4170
ECOL585055 EC55989_3174EC55989_3169EC55989_0527EC55989_4121
ECOL585035 ECS88_3167ECS88_3161ECS88_0512ECS88_4070
ECOL585034 ECIAI1_3007ECIAI1_3002ECIAI1_0515ECIAI1_3828
ECOL481805 ECOLC_0821ECOLC_0826ECOLC_3110ECOLC_0057
ECOL469008 ECBD_0850ECBD_0855ECBD_3145ECBD_0070
ECOL439855 ECSMS35_3020ECSMS35_3015ECSMS35_0555ECSMS35_3989
ECOL413997 ECB_02720ECB_02715ECB_00463ECB_03512
ECOL409438 ECSE_3151ECSE_3146ECSE_0538ECSE_3937
ECOL405955 APECO1_3639APECO1_3644APECO1_1502APECO1_2807
ECOL364106 UTI89_C3272UTI89_C3267UTI89_C0541UTI89_C4199
ECOL362663 ECP_2881ECP_2876ECP_0573ECP_3752
ECOL331111 ECE24377A_3213ECE24377A_3208ECE24377A_0550ECE24377A_4158
ECOL316407 ECK2883:JW5470:B2888ECK2878:JW2850:B2882ECK0506:JW0501:B0513ECK3644:JW3629:B3654
ECOL199310 C3465C3460C0627C4479
ECAR218491 ECA0035ECA0035ECA1256ECA0035
DSHI398580 DSHI_3202DSHI_3202DSHI_3202
DRAD243230 DR_A0176DR_A0176DR_A0176DR_A0176
DPSY177439 DP1412DP1412DP1412DP1412
DGEO319795 DGEO_2599DGEO_2599DGEO_2599
DDES207559 DDE_0701DDE_0701DDE_0701DDE_0701
CSP501479 CSE45_5022CSE45_1992CSE45_1992CSE45_1992
CSAL290398 CSAL_1785CSAL_1785CSAL_1785
CPSY167879 CPS_2522CPS_2522CPS_2522
CPHY357809 CPHY_1498CPHY_1498CPHY_1498
CPER289380 CPR_0384CPR_0384CPR_1486CPR_0384
CPER195103 CPF_0385CPF_0385CPF_1756CPF_0385
CPER195102 CPE0397CPE0397CPE1505CPE0397
CGLU196627 CG2590CG2590CG2590
CEFF196164 CE2267CE2267CE2267
CDIP257309 DIP1943DIP1943DIP1943
CDIF272563 CD3180CD2091CD3180CD2075
CBOT536232 CLM_3283CLM_0384CLM_0384
CBOT515621 CLJ_B3141CLJ_B0370CLJ_B0370
CBOT508765 CLL_A0639CLL_A1696CLL_A1433CLL_A1696
CBOT498213 CLD_1655CLD_0437CLD_0437
CBOT441772 CLI_2943CLI_0386CLI_0386
CBOT441771 CLC_2784CLC_0374CLC_0374
CBOT441770 CLB_2851CLB_0359CLB_0359
CBOT36826 CBO2887CBO0316CBO0316
CBEI290402 CBEI_1981CBEI_2426CBEI_1715CBEI_2426
CACE272562 CAC0872CAC0872CAC0872
BWEI315730 BCERKBAB4_1491BCERKBAB4_1491BCERKBAB4_4913BCERKBAB4_1491
BVIE269482 BCEP1808_2720BCEP1808_4599BCEP1808_2720BCEP1808_4599
BTHU412694 BALH_1418BALH_1418BALH_4895BALH_1418
BTHU281309 BT9727_1448BT9727_1448BT9727_5076BT9727_1448
BTHE226186 BT_4473BT_4473BT_4473
BTHA271848 BTH_I0683BTH_I1007BTH_I0252BTH_I1007
BSUB BSU22060BSU32430BSU37940BSU32430
BSP376 BRADO1735BRADO1735BRADO1735
BSP36773 BCEP18194_A5937BCEP18194_B2088BCEP18194_B2088BCEP18194_B2088
BPUM315750 BPUM_1943BPUM_1943BPUM_3441BPUM_1943
BPSE320373 BURPS668_0858BURPS668_1222BURPS668_0279BURPS668_1222
BPSE320372 BURPS1710B_A1073BURPS1710B_A1450BURPS1710B_A0495BURPS1710B_A1450
BPSE272560 BPSL0817BPSL1136BPSL0282BPSL1136
BMAL320389 BMA10247_0064BMA10247_0349BMA10247_3342BMA10247_0349
BMAL320388 BMASAVP1_A0616BMASAVP1_A1066BMASAVP1_A3006BMASAVP1_A1066
BMAL243160 BMA_0320BMA_1892BMA_3337BMA_1892
BLON206672 BL0892BL0892BL0892
BLIC279010 BL00679BL00679BL03897BL00679
BJAP224911 BLR6162BLR6162BLR6162
BFRA295405 BF3579BF3579BF3579
BFRA272559 BF3384BF3384BF3384
BCER572264 BCA_1629BCA_1629BCA_5547BCA_1629
BCER405917 BCE_1698BCE_1698BCE_5524BCE_1698
BCER315749 BCER98_1303BCER98_1303BCER98_3916BCER98_1303
BCER288681 BCE33L1449BCE33L1449BCE33L4601BCE33L1449
BCER226900 BC_1570BC_1570BC_5395BC_1570
BCEN331272 BCEN2424_2606BCEN2424_4002BCEN2424_2606BCEN2424_4002
BCEN331271 BCEN_1996BCEN_4364BCEN_1996BCEN_4364
BANT592021 BAA_1661BAA_1661BAA_5672BAA_1661
BANT568206 BAMEG_3001BAMEG_3001BAMEG_5689BAMEG_3001
BANT261594 GBAA1592GBAA1592GBAA5645GBAA1592
BANT260799 BAS1476BAS1476BAS5247BAS1476
BAMY326423 RBAM_020250RBAM_020250RBAM_035190RBAM_020250
BAMB398577 BAMMC406_2526BAMMC406_3915BAMMC406_3915BAMMC406_3915
BAMB339670 BAMB_2653BAMB_3408BAMB_3408BAMB_3408
ASP62977 ACIAD0762ACIAD0702ACIAD0702ACIAD0702
ASP232721 AJS_1113AJS_1113AJS_0048AJS_1113
ASP1667 ARTH_3428ARTH_3428ARTH_3428
ASAL382245 ASA_1259ASA_1259ASA_1259
APLE434271 APJL_1095APJL_1095APJL_1095APJL_1095
APLE416269 APL_1079APL_1079APL_1079APL_1079
AMET293826 AMET_0604AMET_0604AMET_0465AMET_0604
AHYD196024 AHA_2586AHA_2174AHA_1273AHA_1273
ACAU438753 AZC_0790AZC_0790AZC_0139AZC_0790
ABAU360910 BAV0446BAV0446BAV0446BAV0446
AAUR290340 AAUR_3403AAUR_3403AAUR_3403


Organism features enriched in list (features available for 235 out of the 251 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00002035592
Arrangment:Clusters 0.00004671517
Arrangment:Pairs 7.495e-972112
Disease:Bubonic_plague 0.004127366
Disease:Dysentery 0.004127366
Disease:Gastroenteritis 0.00643511013
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00003961111
Disease:Wide_range_of_infections 0.00067331011
Endospores:Yes 0.00001423653
Genome_Size_Range5:0-2 1.478e-1227155
Genome_Size_Range5:4-6 9.311e-8103184
Genome_Size_Range5:6-10 0.00004183247
Genome_Size_Range9:1-2 1.411e-727128
Genome_Size_Range9:4-5 0.00099985296
Genome_Size_Range9:5-6 0.00013225188
Genome_Size_Range9:6-8 0.00020522638
Gram_Stain:Gram_Neg 0.0000136110333
Gram_Stain:Gram_Pos 5.200e-15101150
Habitat:Aquatic 0.00009042191
Habitat:Multiple 3.229e-799178
Habitat:Specialized 0.00092341153
Habitat:Terrestrial 0.00310982031
Optimal_temp.:- 0.009736592257
Optimal_temp.:30-37 5.276e-81818
Oxygen_Req:Aerobic 0.000231556185
Oxygen_Req:Facultative 4.511e-15125201
Pathogenic_in:Human 2.598e-8117213
Pathogenic_in:No 0.000042169226
Shape:Coccus 0.00006324982
Shape:Rod 0.0000462162347
Temp._range:Hyperthermophilic 0.0033600323
Temp._range:Mesophilic 1.182e-6212473
Temp._range:Thermophilic 0.0004903535



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 367
Effective number of orgs (counting one per cluster within 468 clusters): 306

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VEIS391735 ncbi Verminephrobacter eiseniae EF01-20
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE292459 ncbi Symbiobacterium thermophilum IAM 148630
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP94122 ncbi Shewanella sp. ANA-30
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSED425104 ncbi Shewanella sediminis HAW-EB30
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPEA398579 ncbi Shewanella pealeana ATCC 7003450
SONE211586 ncbi Shewanella oneidensis MR-10
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SLOI323850 ncbi Shewanella loihica PV-40
SGLO343509 ncbi Sodalis glossinidius morsitans0
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2170
SDEG203122 ncbi Saccharophagus degradans 2-400
SBAL402882 ncbi Shewanella baltica OS1850
SBAL399599 ncbi Shewanella baltica OS1950
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SACI56780 ncbi Syntrophus aciditrophicus SB1
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170250
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170290
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.10
RSP357808 ncbi Roseiflexus sp. RS-10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111700
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316058 ncbi Rhodopseudomonas palustris HaA20
RPAL316057 ncbi Rhodopseudomonas palustris BisB50
RPAL316056 ncbi Rhodopseudomonas palustris BisB180
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RPAL258594 ncbi Rhodopseudomonas palustris CGA0090
RMAS416276 ncbi Rickettsia massiliae MTU50
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38410
RFER338969 ncbi Rhodoferax ferrireducens T1180
RFEL315456 ncbi Rickettsia felis URRWXCal20
RETL347834 ncbi Rhizobium etli CFN 420
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSTU379731 ncbi Pseudomonas stutzeri A15010
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP296591 ncbi Polaromonas sp. JS6661
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PNAP365044 ncbi Polaromonas naphthalenivorans CJ21
PMUL272843 ncbi Pasteurella multocida multocida Pm700
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PING357804 ncbi Psychromonas ingrahamii 370
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OCAR504832 ncbi Oligotropha carboxidovorans OM50
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP35761 Nocardioides sp.0
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16220
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP400668 ncbi Marinomonas sp. MWYL10
MSP266779 ncbi Chelativorans sp. BNC10
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLOT266835 ncbi Mesorhizobium loti MAFF3030990
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HINF71421 ncbi Haemophilus influenzae Rd KW200
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HCHE349521 ncbi Hahella chejuensis KCTC 23960
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GURA351605 ncbi Geobacter uraniireducens Rf40
GSUL243231 ncbi Geobacter sulfurreducens PCA0
GMET269799 ncbi Geobacter metallireducens GS-150
GKAU235909 ncbi Geobacillus kaustophilus HTA4260
GFOR411154 ncbi Gramella forsetii KT08030
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRED349161 ncbi Desulfotomaculum reducens MI-11
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DHAF138119 ncbi Desulfitobacterium hafniense Y510
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DARO159087 ncbi Dechloromonas aromatica RCB0
CVIO243365 ncbi Chromobacterium violaceum ATCC 124720
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5551
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29010
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB150
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BSUI470137 ncbi Brucella suis ATCC 234450
BSUI204722 ncbi Brucella suis 13300
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPET94624 Bordetella petrii0
BPER257313 ncbi Bordetella pertussis Tohama I1
BPAR257311 ncbi Bordetella parapertussis 128220
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23080
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M0
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BHAL272558 ncbi Bacillus halodurans C-1250
BGAR290434 ncbi Borrelia garinii PBi0
BCLA66692 ncbi Bacillus clausii KSM-K160
BCIC186490 Candidatus Baumannia cicadellinicola0
BCAN483179 ncbi Brucella canis ATCC 233650
BBUR224326 ncbi Borrelia burgdorferi B310
BBRO257310 ncbi Bordetella bronchiseptica RB501
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9410
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294131
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62928 ncbi Azoarcus sp. BH720
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs1
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C1
ACRY349163 ncbi Acidiphilium cryptum JF-50
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3450
AAVE397945 ncbi Acidovorax citrulli AAC00-11
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G7507   G7501   G6282   EG11194   
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
WSUC273121
WPIP955
WPIP80849
VEIS391735
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852
TTHE262724
TTEN273068
TSP28240
TSP1755
TROS309801
TPSE340099
TPET390874
TPEN368408
TPAL243276
TMAR243274
TLET416591
TFUS269800
TERY203124
TELO197221
TDEN326298
TDEN292415
TDEN243275
TCRU317025
TACI273075
SWOL335541
STRO369723
STOK273063
STHE322159
STHE299768
STHE292459
STHE264199
SSUI391296
SSUI391295
SSP94122
SSP84588
SSP64471
SSP387093
SSP321332
SSP321327
SSP1148
SSP1131
SSOL273057
SSED425104
SRUB309807
SPEA398579
SONE211586
SMUT210007
SMAR399550
SLOI323850
SGLO343509
SFUM335543
SELO269084
SDEN318161
SDEG203122
SBAL402882
SBAL399599
SARE391037
SALA317655
SACI56780 SYN_00733
SACI330779
RTYP257363
RSPH349102
RSPH349101
RSPH272943
RSP357808
RSAL288705
RRUB269796
RRIC452659
RRIC392021
RPRO272947
RPAL316058
RPAL316057
RPAL316056
RPAL316055
RPAL258594
RMAS416276
RLEG216596
RFER338969
RFEL315456
RETL347834
RCON272944
RCAS383372
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PSTU379731
PSP56811
PSP312153
PSP296591 BPRO_0117
PSP117
PRUM264731
PNAP365044 PNAP_0076
PMUL272843
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PISL384616
PING357804
PHOR70601
PHAL326442
PCAR338963
PAST100379
PARS340102
PARC259536
PAER178306
PACN267747
OTSU357244
OCAR504832
NWIN323098
NSP387092
NSP35761
NSP103690
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NHAM323097
NGON242231
NFAR247156
NEUT335283
NEUR228410
NARO279238
MXAN246197
MTUB419947
MTUB336982
MTHE349307
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP400668
MSP266779
MSP189918
MSP164757
MSP164756
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR394221
MMAR368407
MMAG342108
MLOT266835
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MFLA265072
MCAP340047
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAQU351348
MAER449447
MAEO419665
MACE188937
LXYL281090
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LINT363253
LINT267671
LINT189518
LBOR355277
LBOR355276
LBIF456481
LBIF355278
KRAD266940
ILOI283942
IHOS453591
HSP64091
HSOM228400
HSOM205914
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032
HMUK485914
HMOD498761
HINF71421
HINF374930
HINF281310
HHEP235279
HHAL349124
HCHE349521
HBUT415426
HAUR316274
HARS204773
HACI382638
GVIO251221
GURA351605
GSUL243231
GMET269799
GKAU235909
GFOR411154
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSP1855
FSP106370
FRANT
FPHI484022
FNUC190304
FNOD381764
FJOH376686
FALN326424
ERUM302409
ERUM254945
ELIT314225
ECHA205920
ECAN269484
DVUL882
DSP255470
DSP216389
DRED349161 DRED_1236
DOLE96561
DNOD246195
DHAF138119
DETH243164
DARO159087
CVIO243365
CVES412965
CTRA471473
CTRA471472
CTET212717
CTEP194439
CSUL444179
CSP78
CRUT413404
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPEL335992
CNOV386415
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CKLU431943 CKL_1200
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CJAP155077
CHYD246194
CHUT269798
CHOM360107
CFET360106
CFEL264202
CDES477974
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBLO291272
CBLO203907
CAULO
CABO218497
BXEN266265
BTUR314724
BTRI382640
BSUI470137
BSUI204722
BSP107806
BQUI283165
BPET94624
BPER257313 BP2269
BPAR257311
BOVI236
BMEL359391
BMEL224914
BHER314723
BHEN283166
BHAL272558
BGAR290434
BCLA66692
BCIC186490
BCAN483179
BBUR224326
BBRO257310 BB1455
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BAFZ390236
BABO262698
AYEL322098
AVAR240292 AVA_B0104
AURANTIMONAS
ASP76114
ASP62928
APHA212042
APER272557
AORE350688 CLOS_0576
ANAE240017
AMAR329726
AMAR234826
ALAI441768
AFUL224325
AFER243159
AEHR187272
ADEH290397 ADEH_0054
ACRY349163
ACEL351607
ABUT367737
ABOR393595
ABAC204669
AAVE397945 AAVE_0102
AAEO224324


Organism features enriched in list (features available for 343 out of the 367 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 6.432e-63592
Arrangment:Clusters 0.0000628217
Arrangment:Pairs 2.147e-938112
Disease:Gastroenteritis 0.0076359313
Endospores:Yes 0.00002511753
GC_Content_Range7:0-30 0.00903063547
Genome_Size_Range5:0-2 1.208e-12127155
Genome_Size_Range5:4-6 6.656e-879184
Genome_Size_Range5:6-10 0.00006901547
Genome_Size_Range9:0-1 3.882e-72727
Genome_Size_Range9:1-2 1.450e-7100128
Genome_Size_Range9:4-5 0.00090394396
Genome_Size_Range9:5-6 0.00010993688
Genome_Size_Range9:6-8 0.00030681238
Gram_Stain:Gram_Neg 0.0000158220333
Gram_Stain:Gram_Pos 1.886e-1547150
Habitat:Aquatic 0.00004637091
Habitat:Multiple 2.222e-777178
Habitat:Specialized 0.00061254253
Habitat:Terrestrial 0.00410381131
Optimal_temp.:- 0.0064411164257
Oxygen_Req:Aerobic 0.0001664128185
Oxygen_Req:Facultative 8.482e-1673201
Oxygen_Req:Microaerophilic 0.00005911818
Pathogenic_in:Human 6.079e-895213
Pathogenic_in:No 0.0001658153226
Shape:Coccus 0.00001883182
Shape:Rod 0.0000478182347
Shape:Sphere 0.00003401919
Shape:Spiral 7.224e-93434
Temp._range:Hyperthermophilic 0.00265822023
Temp._range:Mesophilic 4.619e-7256473
Temp._range:Thermophilic 0.00034643035



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
IDNCAT-PWY (L-idonate degradation)2461810.5482
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))1211090.4984
PWY0-1314 (fructose degradation)2241630.4962
SERDEG-PWY (L-serine degradation)3492120.4707
PWY-3722 (glycine betaine biosynthesis II (Gram-positive bacteria))1411160.4629
PWY-5480 (pyruvate fermentation to ethanol I)109910.4056
SUCUTIL-PWY (sucrose degradation I)124990.4020
P122-PWY (heterolactic fermentation)119960.4001



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7501   G6282   EG11194   
G75070.9998870.9994150.999896
G75010.9994610.999947
G62820.999456
EG11194



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PAIRWISE BLAST SCORES:

  G7507   G7501   G6282   EG11194   
G75070.0f02.3e-42-2.3e-44
G75018.7e-360.0f0-4.8e-90
G62824.0e-6-0.0f07.4e-7
EG111944.4e-413.2e-93-0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G7501 G7507 (centered at G7507)
EG11194 (centered at EG11194)
G6282 (centered at G6282)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7507   G7501   G6282   EG11194   
247/623253/623174/623257/623
AAUR290340:2:Tyes00-0
AAVE397945:0:Tyes--0-
ABAU360910:0:Tyes0000
ACAU438753:0:Tyes6606600660
ADEH290397:0:Tyes--0-
AHYD196024:0:Tyes128388500
AMET293826:0:Tyes1381380138
AORE350688:0:Tyes-0--
APLE416269:0:Tyes0000
APLE434271:0:Tno0000
ASAL382245:5:Tyes00-0
ASP1667:3:Tyes00-0
ASP232721:2:Tyes1050105001050
ASP62977:0:Tyes54000
AVAR240292:2:Tyes--0-
BAMB339670:2:Tno-000
BAMB339670:3:Tno0---
BAMB398577:2:Tno-000
BAMB398577:3:Tno0---
BAMY326423:0:Tyes0014920
BANT260799:0:Tno0037680
BANT261594:2:Tno0037410
BANT568206:2:Tyes0025790
BANT592021:2:Tno0039450
BBRO257310:0:Tyes--0-
BCEN331271:1:Tno-0-0
BCEN331271:2:Tno0-0-
BCEN331272:2:Tyes-0-0
BCEN331272:3:Tyes0-0-
BCER226900:1:Tyes0037370
BCER288681:0:Tno0031330
BCER315749:1:Tyes0024750
BCER405917:1:Tyes0036300
BCER572264:1:Tno0038480
BFRA272559:1:Tyes00-0
BFRA295405:0:Tno00-0
BJAP224911:0:Fyes00-0
BLIC279010:0:Tyes0015980
BLON206672:0:Tyes00-0
BMAL243160:1:Tno0137927021379
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