CANDIDATE ID: 322

CANDIDATE ID: 322

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9971250e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:   6.4075000e-32

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7417 (ygbJ) (b2736)
   Products of gene:
     - G7417-MONOMER (predicted dehydrogenase, with NAD(P)-binding Rossmann-fold domain)

- G6278 (glxR) (b0509)
   Products of gene:
     - G6278-MONOMER (tartronate semialdehyde reductase 2)
     - CPLX0-7616 (tartronate semialdehyde reductase 2)
       Reactions:
        D-glycerate + NAD+  =  tartronate semialdehyde + NADH + H+
         In pathways
         GLYCOL-GLYOXDEG-PWY (superpathway of glycol metabolism and degradation)
         GLYCOLATEMET-PWY (glycolate and glyoxylate degradation I)

- EG11847 (yihU) (b3882)
   Products of gene:
     - EG11847-MONOMER (succinate semialdehyde reductase)
     - CPLX0-7794 (succinate semialdehyde reductase)
       Reactions:
        NAD+ + 4-hydroxybutyrate  =  NADH + succinate semialdehyde + H+
         In pathways
         PWY-5677 (PWY-5677)
         PWY-5022 (PWY-5022)

- EG11176 (garR) (b3125)
   Products of gene:
     - TSA-REDUCT-MONOMER (tartronate semialdehyde reductase)
       Reactions:
        NAD(P)H + tartronate semialdehyde + H+  ->  NAD(P)+ + D-glycerate
         In pathways
         GLYCOL-GLYOXDEG-PWY (superpathway of glycol metabolism and degradation)
         GLYCOLATEMET-PWY (glycolate and glyoxylate degradation I)
         GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)
         PWY-6516 (PWY-6516)
         GALACTARDEG-PWY (D-galactarate degradation I)
         GLUCARDEG-PWY (D-glucarate degradation I)



Back to top


ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 217
Effective number of orgs (counting one per cluster within 468 clusters): 159

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A4
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110184
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103314
XCAM487884 Xanthomonas campestris pv. paulliniae3
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-104
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80043
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339133
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3064
XAUT78245 ncbi Xanthobacter autotrophicus Py24
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1143
VEIS391735 ncbi Verminephrobacter eiseniae EF01-24
VCHO345073 ncbi Vibrio cholerae O3953
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169613
TROS309801 ncbi Thermomicrobium roseum DSM 51594
TFUS269800 ncbi Thermobifida fusca YX4
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252593
TDEN243275 ncbi Treponema denticola ATCC 354053
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
SSP94122 ncbi Shewanella sp. ANA-34
SSP84588 ncbi Synechococcus sp. WH 81023
SSP64471 ncbi Synechococcus sp. CC93113
SSP644076 Silicibacter sp. TrichCH4B3
SSP292414 ncbi Ruegeria sp. TM10404
SSP1131 Synechococcus sp. CC96054
SSON300269 ncbi Shigella sonnei Ss0464
SSOL273057 ncbi Sulfolobus solfataricus P24
SSED425104 ncbi Shewanella sediminis HAW-EB34
SPRO399741 ncbi Serratia proteamaculans 5683
SPEA398579 ncbi Shewanella pealeana ATCC 7003453
SONE211586 ncbi Shewanella oneidensis MR-14
SMEL266834 ncbi Sinorhizobium meliloti 10214
SMED366394 ncbi Sinorhizobium medicae WSM4194
SLOI323850 ncbi Shewanella loihica PV-43
SLAC55218 Ruegeria lacuscaerulensis3
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB43
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB3
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23384
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SDEN318161 ncbi Shewanella denitrificans OS2174
SCO ncbi Streptomyces coelicolor A3(2)4
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
SAVE227882 ncbi Streptomyces avermitilis MA-46804
SALA317655 ncbi Sphingopyxis alaskensis RB22564
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99414
RSP357808 ncbi Roseiflexus sp. RS-14
RSP101510 ncbi Rhodococcus jostii RHA14
RSOL267608 ncbi Ralstonia solanacearum GMI10004
RPOM246200 ncbi Ruegeria pomeroyi DSS-34
RMET266264 ncbi Ralstonia metallidurans CH344
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38414
RFER338969 ncbi Rhodoferax ferrireducens T1183
REUT381666 ncbi Ralstonia eutropha H164
REUT264198 ncbi Ralstonia eutropha JMP1344
RETL347834 ncbi Rhizobium etli CFN 424
RDEN375451 ncbi Roseobacter denitrificans OCh 1144
RCAS383372 ncbi Roseiflexus castenholzii DSM 139414
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a3
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-14
PSP296591 ncbi Polaromonas sp. JS6664
PSP117 Pirellula sp.3
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS93
PNAP365044 ncbi Polaromonas naphthalenivorans CJ24
PMEN399739 ncbi Pseudomonas mendocina ymp4
PISL384616 ncbi Pyrobaculum islandicum DSM 41844
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PCRY335284 ncbi Psychrobacter cryohalolentis K54
PATL342610 ncbi Pseudoalteromonas atlantica T6c3
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135144
PARC259536 ncbi Psychrobacter arcticus 273-44
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
PAER178306 ncbi Pyrobaculum aerophilum IM23
OIHE221109 ncbi Oceanobacillus iheyensis HTE8313
OCAR504832 ncbi Oligotropha carboxidovorans OM54
OANT439375 ncbi Ochrobactrum anthropi ATCC 491884
NEUT335283 ncbi Nitrosomonas eutropha C913
NEUR228410 ncbi Nitrosomonas europaea ATCC 197184
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSP409 Methylobacterium sp.4
MSP400668 ncbi Marinomonas sp. MWYL13
MSP266779 ncbi Chelativorans sp. BNC14
MSP189918 ncbi Mycobacterium sp. KMS4
MSP164757 ncbi Mycobacterium sp. JLS4
MSP164756 ncbi Mycobacterium sp. MCS4
MSME246196 ncbi Mycobacterium smegmatis MC2 1554
MPET420662 ncbi Methylibium petroleiphilum PM14
MMAR394221 ncbi Maricaulis maris MCS103
MMAG342108 ncbi Magnetospirillum magneticum AMB-13
MLOT266835 ncbi Mesorhizobium loti MAFF3030994
MCAP243233 ncbi Methylococcus capsulatus Bath4
MAQU351348 ncbi Marinobacter aquaeolei VT84
MAER449447 ncbi Microcystis aeruginosa NIES-8433
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53344
LSPH444177 ncbi Lysinibacillus sphaericus C3-414
LSAK314315 ncbi Lactobacillus sakei sakei 23K3
LMON265669 ncbi Listeria monocytogenes 4b F23654
LMON169963 ncbi Listeria monocytogenes EGD-e4
LINN272626 ncbi Listeria innocua Clip112624
LCHO395495 ncbi Leptothrix cholodnii SP-64
KRAD266940 ncbi Kineococcus radiotolerans SRS302163
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP375286 ncbi Janthinobacterium sp. Marseille3
ILOI283942 ncbi Idiomarina loihiensis L2TR3
HNEP81032 Hyphomonas neptunium4
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237794
HARS204773 ncbi Herminiimonas arsenicoxydans3
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-24
GMET269799 ncbi Geobacter metallireducens GS-153
GKAU235909 ncbi Geobacillus kaustophilus HTA4264
ESP42895 Enterobacter sp.4
ELIT314225 ncbi Erythrobacter litoralis HTCC25944
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DHAF138119 ncbi Desulfitobacterium hafniense Y514
DGEO319795 ncbi Deinococcus geothermalis DSM 113004
DARO159087 ncbi Dechloromonas aromatica RCB4
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CSAL290398 ncbi Chromohalobacter salexigens DSM 30433
CPSY167879 ncbi Colwellia psychrerythraea 34H4
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10623
CMAQ397948 ncbi Caldivirga maquilingensis IC-1674
CDIF272563 ncbi Clostridium difficile 6304
BXEN266265 ncbi Burkholderia xenovorans LB4004
BWEI315730 ncbi Bacillus weihenstephanensis KBAB44
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTHU412694 ncbi Bacillus thuringiensis Al Hakam4
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-273
BTHA271848 ncbi Burkholderia thailandensis E2644
BSUI470137 ncbi Brucella suis ATCC 234453
BSUI204722 ncbi Brucella suis 13303
BSP376 Bradyrhizobium sp.3
BSP36773 Burkholderia sp.4
BPUM315750 ncbi Bacillus pumilus SAFR-0324
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii4
BPER257313 ncbi Bordetella pertussis Tohama I3
BPAR257311 ncbi Bordetella parapertussis 128223
BOVI236 Brucella ovis3
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M3
BMAL320389 ncbi Burkholderia mallei NCTC 102473
BMAL243160 ncbi Burkholderia mallei ATCC 233443
BLIC279010 ncbi Bacillus licheniformis ATCC 145803
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1104
BCLA66692 ncbi Bacillus clausii KSM-K164
BCER572264 ncbi Bacillus cereus 03BB1023
BCER405917 Bacillus cereus W3
BCER315749 ncbi Bacillus cytotoxicus NVH 391-984
BCER288681 ncbi Bacillus cereus E33L3
BCER226900 ncbi Bacillus cereus ATCC 145793
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BCAN483179 ncbi Brucella canis ATCC 233653
BBRO257310 ncbi Bordetella bronchiseptica RB503
BANT592021 ncbi Bacillus anthracis A02483
BANT568206 ncbi Bacillus anthracis CDC 6843
BANT261594 ncbi Bacillus anthracis Ames Ancestor3
BANT260799 ncbi Bacillus anthracis Sterne3
BAMY326423 ncbi Bacillus amyloliquefaciens FZB423
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
ASP76114 ncbi Aromatoleum aromaticum EbN13
ASP62977 ncbi Acinetobacter sp. ADP13
ASP62928 ncbi Azoarcus sp. BH723
ASP232721 ncbi Acidovorax sp. JS424
ASP1667 Arthrobacter sp.4
AMET293826 ncbi Alkaliphilus metalliredigens QYMF4
AHYD196024 Aeromonas hydrophila dhakensis3
ACRY349163 ncbi Acidiphilium cryptum JF-54
ACAU438753 ncbi Azorhizobium caulinodans ORS 5714
ABOR393595 ncbi Alcanivorax borkumensis SK24
ABAU360910 ncbi Bordetella avium 197N4
AAVE397945 ncbi Acidovorax citrulli AAC00-14
AAUR290340 ncbi Arthrobacter aurescens TC14


Names of the homologs of the genes in the group in each of these orgs
  G7417   G6278   EG11847   EG11176   
XORY360094 XOOORF_3158XOOORF_3158XOOORF_3158XOOORF_3158
XORY342109 XOO1742XOO1742XOO1742XOO1742
XORY291331 XOO1846XOO1846XOO1846XOO1846
XCAM487884 XCC-B100_3039XCC-B100_3039XCC-B100_3039
XCAM316273 XCAORF_1517XCAORF_1517XCAORF_1517XCAORF_1517
XCAM314565 XC_2977XC_2977XC_2977
XCAM190485 XCC1264XCC1264XCC1264
XAXO190486 XAC1316XAC1316XAC1316XAC1316
XAUT78245 XAUT_1027XAUT_2369XAUT_1538XAUT_2369
VVUL216895 VV2_1637VV2_1637VV2_0489VV2_1637
VVUL196600 VVA0448VVA0448VVA1038VVA0448
VPAR223926 VPA1118VPA1419VPA0625VPA1118
VFIS312309 VFA0173VFA0173VFA0173
VEIS391735 VEIS_3388VEIS_1704VEIS_3539VEIS_1704
VCHO345073 VC0395_0123VC0395_0123VC0395_0123
VCHO VCA0007VCA0007VCA0007
TROS309801 TRD_A0639TRD_A0460TRD_A0460TRD_A0460
TFUS269800 TFU_1265TFU_1265TFU_1265TFU_1265
TDEN292415 TBD_0081TBD_0081TBD_0081
TDEN243275 TDE_1000TDE_1000TDE_1000
STYP99287 STM2918STM0519STM4023STM3248
SSP94122 SHEWANA3_2766SHEWANA3_2554SHEWANA3_2766SHEWANA3_2554
SSP84588 SYNW2331OR0970SYNW2331OR0970SYNW2331OR0970
SSP64471 GSYN2867GSYN2867GSYN2867
SSP644076 SCH4B_2290SCH4B_2290SCH4B_2290
SSP292414 TM1040_1353TM1040_1353TM1040_1353TM1040_1353
SSP1131 SYNCC9605_2461SYNCC9605_2461SYNCC9605_2461SYNCC9605_2461
SSON300269 SSO_2884SSO_3280SSO_4048SSO_3280
SSOL273057 SSO1560SSO1560SSO1560SSO1560
SSED425104 SSED_2619SSED_2619SSED_1478SSED_2619
SPRO399741 SPRO_1492SPRO_1492SPRO_1492
SPEA398579 SPEA_2778SPEA_2489SPEA_2778
SONE211586 SO_1682SO_2771SO_1682SO_2771
SMEL266834 SMB20668SMB20679SMB20679SMB20679
SMED366394 SMED_4321SMED_4310SMED_5561SMED_5561
SLOI323850 SHEW_1672SHEW_1609SHEW_1672
SLAC55218 SL1157_0432SL1157_0432SL1157_0432
SHIGELLA YHAEYHAEYIHUYHAE
SHAL458817 SHAL_2873SHAL_1782SHAL_2873
SFUM335543 SFUM_2944SFUM_2944SFUM_2944
SFLE373384 SFV_2767SFV_3165SFV_3617SFV_3165
SFLE198214 AAN44632.1AAN44632.1AAN45389.1AAN44632.1
SERY405948 SACE_6730SACE_1936SACE_1936SACE_6730
SENT454169 SEHA_C3107SEHA_C0627SEHA_C4346SEHA_C3546
SENT321314 SCH_2848SCH_0559SCH_3913SCH_3195
SENT295319 SPA2775SPA2203SPA3864SPA3117
SENT220341 STY3430STY0567STY3855STY3430
SENT209261 T3168T2341T3598T3168
SDYS300267 SDY_3319SDY_3319SDY_3319SDY_3319
SDEN318161 SDEN_1938SDEN_2289SDEN_1938SDEN_2289
SCO SCO6205SCO6205SCO6205SCO6205
SBOY300268 SBO_2784SBO_2990SBO_3887SBO_2990
SBAL402882 SHEW185_1494SHEW185_1721SHEW185_1494SHEW185_1721
SBAL399599 SBAL195_1530SBAL195_1764SBAL195_1530SBAL195_1764
SAVE227882 SAV2025SAV2025SAV2025SAV2025
SALA317655 SALA_1843SALA_1843SALA_3056SALA_1843
RXYL266117 RXYL_2852RXYL_1714RXYL_2852RXYL_2852
RSP357808 ROSERS_3990ROSERS_3990ROSERS_3990ROSERS_3990
RSP101510 RHA1_RO01539RHA1_RO03224RHA1_RO03224RHA1_RO02575
RSOL267608 RSP0649RSC3283RSP0649RSC3283
RPOM246200 SPO_2560SPO_0792SPO_0792SPO_0792
RMET266264 RMET_1835RMET_3450RMET_1835RMET_1632
RLEG216596 PRL120616RL3800RL3800RL3800
RFER338969 RFER_0446RFER_3038RFER_0446
REUT381666 H16_A1562H16_A3600H16_B1190H16_B0941
REUT264198 REUT_A1427REUT_A3293REUT_B4259REUT_A1500
RETL347834 RHE_PF00345RHE_CH02433RHE_PF00345RHE_CH02433
RDEN375451 RD1_3786RD1_0684RD1_3786RD1_0684
RCAS383372 RCAS_3343RCAS_3343RCAS_3343RCAS_3343
PSYR223283 PSPTO_5060PSPTO_0783PSPTO_0783PSPTO_5060
PSYR205918 PSYR_0466PSYR_0690PSYR_0466
PSTU379731 PST_3116PST_3116PST_3116PST_3116
PSP312153 PNUC_1634PNUC_0958PNUC_1557PNUC_0958
PSP296591 BPRO_4883BPRO_3102BPRO_2471BPRO_3102
PSP117 RB13140RB3816RB3816
PPUT76869 PPUTGB1_4664PPUTGB1_3864PPUTGB1_3864PPUTGB1_3864
PPUT351746 PPUT_4530PPUT_1570PPUT_1570PPUT_1570
PPUT160488 PP_4666PP_4299PP_4299PP_4299
PPRO298386 PBPRA2273PBPRB1107PBPRA2273
PNAP365044 PNAP_0274PNAP_1600PNAP_1600PNAP_1600
PMEN399739 PMEN_1371PMEN_2771PMEN_1371PMEN_2771
PISL384616 PISL_1265PISL_1265PISL_1265PISL_1265
PHAL326442 PSHAA1459PSHAA1459PSHAA1459PSHAA1459
PFLU220664 PFL_3346PFL_1699PFL_0748PFL_1699
PFLU216595 PFLU2352PFLU1801PFLU1801PFLU1801
PFLU205922 PFL_0696PFL_1596PFL_0696PFL_1596
PENT384676 PSEEN0700PSEEN1670PSEEN1670PSEEN1670
PCRY335284 PCRYO_1513PCRYO_1513PCRYO_1513PCRYO_1513
PATL342610 PATL_0951PATL_2175PATL_0951
PARS340102 PARS_0236PARS_0236PARS_0236PARS_0236
PARC259536 PSYC_0904PSYC_0904PSYC_0904PSYC_0904
PAER208964 PA0743PA1500PA3569PA1500
PAER208963 PA14_54670PA14_45020PA14_18140PA14_45020
PAER178306 PAE1145PAE1145PAE1145
OIHE221109 OB0815OB0581OB0581
OCAR504832 OCAR_6482OCAR_6560OCAR_6560OCAR_6560
OANT439375 OANT_3760OANT_0460OANT_0460OANT_0460
NEUT335283 NEUT_1881NEUT_1881NEUT_1881
NEUR228410 NE0676NE0676NE0676NE0676
MSUC221988 MS1981MS0692MS0692MS0692
MSP409 M446_2626M446_6206M446_3126M446_6206
MSP400668 MMWYL1_2549MMWYL1_0115MMWYL1_0115
MSP266779 MESO_2516MESO_4460MESO_2516MESO_4460
MSP189918 MKMS_5436MKMS_5436MKMS_5436MKMS_5436
MSP164757 MJLS_5726MJLS_5726MJLS_5726MJLS_5726
MSP164756 MMCS_5347MMCS_5347MMCS_5347MMCS_5347
MSME246196 MSMEG_5477MSMEG_5477MSMEG_5477MSMEG_5477
MPET420662 MPE_A3763MPE_A0975MPE_A0975MPE_A0975
MMAR394221 MMAR10_1542MMAR10_1552MMAR10_1542
MMAG342108 AMB3587AMB3587AMB3587
MLOT266835 MLR0254MLR0254MLR0254MLR0254
MCAP243233 MCA_2048MCA_2048MCA_2048MCA_2048
MAQU351348 MAQU_2129MAQU_3742MAQU_2129MAQU_3742
MAER449447 MAE_39960MAE_39960MAE_39960
LWEL386043 LWE0989LWE0989LWE0989LWE0989
LSPH444177 BSPH_1307BSPH_1298BSPH_1307BSPH_1298
LSAK314315 LSA0463LSA0463LSA0463
LMON265669 LMOF2365_1026LMOF2365_1026LMOF2365_1026LMOF2365_1026
LMON169963 LMO1005LMO1005LMO1005LMO1005
LINN272626 LIN1004LIN1004LIN1004LIN1004
LCHO395495 LCHO_1636LCHO_1133LCHO_1123LCHO_1123
KRAD266940 KRAD_2146KRAD_2146KRAD_2146
KPNE272620 GKPORF_B0664GKPORF_B2883GKPORF_B2883GKPORF_B2883
JSP375286 MMA_0381MMA_0381MMA_0381
ILOI283942 IL0867IL1375IL0867
HNEP81032 HNE_1826HNE_0895HNE_1826HNE_1826
HCHE349521 HCH_00638HCH_00576HCH_00638HCH_00576
HAUR316274 HAUR_1907HAUR_1907HAUR_1907HAUR_1907
HARS204773 HEAR0334HEAR0334HEAR0334
GTHE420246 GTNG_0889GTNG_0889GTNG_0889GTNG_0889
GMET269799 GMET_3011GMET_3011GMET_3011
GKAU235909 GK1027GK1027GK1027GK1027
ESP42895 ENT638_3567ENT638_3567ENT638_3567ENT638_3567
ELIT314225 ELI_01625ELI_01625ELI_10045ELI_01625
EFER585054 EFER_4367EFER_4367EFER_4367EFER_4367
ECOO157 YHAEYBBQYIHUYHAE
ECOL83334 ECS4003ECS0570ECS4805ECS4003
ECOL585397 ECED1_3189ECED1_0529ECED1_4582ECED1_3786
ECOL585057 ECIAI39_3624ECIAI39_3624ECIAI39_3118ECIAI39_3624
ECOL585056 ECUMN_3607ECUMN_0550ECUMN_4409ECUMN_3607
ECOL585055 EC55989_3003EC55989_0524EC55989_4353EC55989_3543
ECOL585035 ECS88_3003ECS88_0508ECS88_4324ECS88_3513
ECOL585034 ECIAI1_2831ECIAI1_0512ECIAI1_4082ECIAI1_3273
ECOL481805 ECOLC_0976ECOLC_3113ECOLC_4139ECOLC_0575
ECOL469008 ECBD_0988ECBD_3148ECBD_4145ECBD_0617
ECOL439855 ECSMS35_3420ECSMS35_0552ECSMS35_4267ECSMS35_3420
ECOL413997 ECB_02586ECB_00459ECB_03767ECB_02990
ECOL409438 ECSE_2984ECSE_0535ECSE_4165ECSE_3409
ECOL405955 APECO1_3788APECO1_1505APECO1_2588APECO1_3302
ECOL364106 UTI89_C3102UTI89_C0538UTI89_C4463UTI89_C3556
ECOL362663 ECP_2714ECP_0570ECP_4088ECP_3215
ECOL331111 ECE24377A_3033ECE24377A_0546ECE24377A_4405ECE24377A_3603
ECOL316407 ECK2731:JW2706:B2736ECK0502:JW0497:B0509ECK3875:JW3853:B3882ECK3113:JW5526:B3125
ECOL199310 C3297C0624C4826C3880
ECAR218491 ECA4327ECA3573ECA3573ECA3573
DHAF138119 DSY4169DSY4169DSY4169DSY4169
DGEO319795 DGEO_2614DGEO_2614DGEO_2614DGEO_2614
DARO159087 DARO_3340DARO_3340DARO_3339DARO_3340
CVIO243365 CV_2081CV_3870CV_2081CV_3870
CSAL290398 CSAL_3178CSAL_1751CSAL_1751
CPSY167879 CPS_3424CPS_2007CPS_3424CPS_2007
CPEL335992 SAR11_0778SAR11_0863SAR11_0778
CMAQ397948 CMAQ_0209CMAQ_0209CMAQ_1097CMAQ_0209
CDIF272563 CD2813CD2813CD2813CD2813
BXEN266265 BXE_B2172BXE_C0957BXE_B1087BXE_C0957
BWEI315730 BCERKBAB4_2160BCERKBAB4_3871BCERKBAB4_2160BCERKBAB4_3871
BVIE269482 BCEP1808_3334BCEP1808_1804BCEP1808_3334BCEP1808_1804
BTHU412694 BALH_2097BALH_3659BALH_2097BALH_3659
BTHU281309 BT9727_2129BT9727_3784BT9727_3784
BTHA271848 BTH_II0977BTH_I2171BTH_II1800BTH_I2171
BSUI470137 BSUIS_A1365BSUIS_A0990BSUIS_A1365
BSUI204722 BR_1314BR_0950BR_1314
BSP376 BRADO2551BRADO3140BRADO6761
BSP36773 BCEP18194_B0478BCEP18194_A5180BCEP18194_B0717BCEP18194_A5180
BPUM315750 BPUM_3559BPUM_3559BPUM_3559BPUM_3559
BPSE320373 BURPS668_A2013BURPS668_2261BURPS668_A0921BURPS668_2261
BPSE320372 BURPS1710B_B0533BURPS1710B_B2557BURPS1710B_B2557BURPS1710B_B2557
BPSE272560 BPSS1415BPSL1450BPSS0620BPSL1450
BPET94624 BPET2509BPET0669BPET2509BPET2509
BPER257313 BP1447BP3053BP1447
BPAR257311 BPP1554BPP3779BPP1554
BOVI236 GBOORFA0146GBOORF0975GBOORF1323
BMEL224914 BMEII1090BMEI1024BMEI0688
BMAL320389 BMA10247_A1857BMA10247_A1857BMA10247_A1857
BMAL243160 BMA_A0577BMA_A0577BMA_A0577
BLIC279010 BL00292BL03574BL00292
BJAP224911 BLR2928BLR3168BLR3957BLR3168
BCLA66692 ABC2403ABC2403ABC1808ABC2403
BCER572264 BCA_2422BCA_4155BCA_4155
BCER405917 BCE_2381BCE_4109BCE_4109
BCER315749 BCER98_1728BCER98_2741BCER98_1728BCER98_1728
BCER288681 BCE33L2115BCE33L3799BCE33L3799
BCER226900 BC_2289BC_4042BC_4042
BCEN331272 BCEN2424_5155BCEN2424_1880BCEN2424_4960BCEN2424_1880
BCEN331271 BCEN_3212BCEN_6199BCEN_3407BCEN_6199
BCAN483179 BCAN_A1339BCAN_A0962BCAN_A1339
BBRO257310 BB1031BB4224BB4070
BANT592021 BAA_2411BAA_2411BAA_2411
BANT568206 BAMEG_2247BAMEG_2247BAMEG_2247
BANT261594 GBAA2353GBAA2353GBAA2353
BANT260799 BAS2192BAS2192BAS2192
BAMY326423 RBAM_013720RBAM_013720RBAM_013720
BAMB398577 BAMMC406_5073BAMMC406_1789BAMMC406_4901BAMMC406_1789
BAMB339670 BAMB_4550BAMB_1817BAMB_4382BAMB_1817
ASP76114 EBA3884EBA3884EBA3884
ASP62977 ACIAD1605ACIAD1605ACIAD1605
ASP62928 AZO3363AZO3363AZO3363
ASP232721 AJS_2005AJS_0417AJS_2005AJS_2005
ASP1667 ARTH_0273ARTH_3690ARTH_1322ARTH_3690
AMET293826 AMET_2959AMET_2959AMET_2959AMET_2959
AHYD196024 AHA_1061AHA_2083AHA_2083
ACRY349163 ACRY_2431ACRY_1159ACRY_0625ACRY_1159
ACAU438753 AZC_2777AZC_3490AZC_3490AZC_3490
ABOR393595 ABO_1503ABO_1232ABO_0022ABO_1232
ABAU360910 BAV1760BAV2903BAV1760BAV1760
AAVE397945 AAVE_2600AAVE_0633AAVE_2600AAVE_2600
AAUR290340 AAUR_0255AAUR_3507AAUR_3507AAUR_3507


Organism features enriched in list (features available for 201 out of the 217 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.0062268117
Arrangment:Pairs 0.006558249112
Disease:Dysentery 0.001598366
Disease:Opportunistic_infections 0.004713455
Endospores:No 5.400e-649211
GC_Content_Range4:0-40 5.217e-2124213
GC_Content_Range4:40-60 0.001362393224
GC_Content_Range4:60-100 1.198e-1184145
GC_Content_Range7:0-30 3.163e-7247
GC_Content_Range7:30-40 6.776e-1322166
GC_Content_Range7:50-60 1.790e-658107
GC_Content_Range7:60-70 2.000e-1179134
Genome_Size_Range5:0-2 1.141e-293155
Genome_Size_Range5:2-4 3.299e-644197
Genome_Size_Range5:4-6 2.647e-23117184
Genome_Size_Range5:6-10 1.018e-103747
Genome_Size_Range9:1-2 5.987e-233128
Genome_Size_Range9:2-3 8.146e-818120
Genome_Size_Range9:4-5 0.00001945196
Genome_Size_Range9:5-6 2.611e-176688
Genome_Size_Range9:6-8 7.244e-93038
Genome_Size_Range9:8-10 0.008545279
Gram_Stain:Gram_Neg 3.246e-6140333
Gram_Stain:Gram_Pos 0.001775938150
Habitat:Host-associated 1.616e-646206
Habitat:Multiple 0.001717976178
Habitat:Terrestrial 0.00335231831
Motility:No 1.425e-727151
Motility:Yes 1.064e-16139267
Optimal_temp.:- 0.0029157103257
Optimal_temp.:30 0.00800691015
Optimal_temp.:37 0.005032626106
Oxygen_Req:Aerobic 0.000128683185
Oxygen_Req:Anaerobic 6.501e-119102
Oxygen_Req:Facultative 0.007426781201
Shape:Coccus 1.673e-7982
Shape:Irregular_coccus 0.0062268117
Shape:Rod 8.185e-15162347
Shape:Sphere 0.0029072119
Shape:Spiral 0.0000620234
Temp._range:Psychrophilic 0.008545279



Back to top


ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 353
Effective number of orgs (counting one per cluster within 468 clusters): 267

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317580
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329530
YPES386656 ncbi Yersinia pestis Pestoides F0
YPES377628 ncbi Yersinia pestis Nepal5160
YPES360102 ncbi Yersinia pestis Antiqua0
YPES349746 ncbi Yersinia pestis Angola0
YPES214092 ncbi Yersinia pestis CO920
YPES187410 ncbi Yersinia pestis KIM 100
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80810
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79010
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SGLO343509 ncbi Sodalis glossinidius morsitans1
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEG203122 ncbi Saccharophagus degradans 2-400
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2050
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL258594 ncbi Rhodopseudomonas palustris CGA0090
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSP56811 Psychrobacter sp.1
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO11
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PAST100379 Onion yellows phytoplasma0
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2551
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X141
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
MXAN246197 ncbi Myxococcus xanthus DK 16220
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MEXT419610 ncbi Methylobacterium extorquens PA11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GURA351605 ncbi Geobacter uraniireducens Rf41
GSUL243231 ncbi Geobacter sulfurreducens PCA1
GOXY290633 ncbi Gluconobacter oxydans 621H0
GFOR411154 ncbi Gramella forsetii KT08030
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRED349161 ncbi Desulfotomaculum reducens MI-10
DRAD243230 ncbi Deinococcus radiodurans R10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.1
CSP501479 Citreicella sp. SE450
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1010
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29010
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1111
CBUR360115 ncbi Coxiella burnetii RSA 3311
CBUR227377 ncbi Coxiella burnetii RSA 4931
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB151
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BMAL320388 ncbi Burkholderia mallei SAVP10
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL030
APLE416269 ncbi Actinobacillus pleuropneumoniae L200
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3451


Names of the homologs of the genes in the group in each of these orgs
  G7417   G6278   EG11847   EG11176   
ZMOB264203
YPSE349747
YPSE273123
YPES386656
YPES377628
YPES360102
YPES349746
YPES214092
YPES187410
YENT393305
XFAS405440
XFAS183190
XFAS160492
WSUC273121
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTUR377629
TTHE300852
TTHE262724
TTEN273068
TSP28240
TSP1755
TPSE340099
TPET390874
TPEN368408
TPAL243276
TMAR243274
TLET416591
TKOD69014
TERY203124
TELO197221
TDEN326298
TCRU317025
TACI273075
SWOL335541
STRO369723
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP387093
SSP321332
SSP321327
SSAP342451
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SHAE279808
SGOR29390
SGLO343509 SG0507
SEPI176280
SEPI176279
SELO269084
SDEG203122
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037
SAGA211110
SAGA208435
SAGA205921
SACI56780
SACI330779
RTYP257363
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RPAL258594
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PTHE370438
PSP56811 PSYCPRWF_0297
PRUM264731
PPEN278197 PEPE_0356
PMOB403833
PMAR93060
PMAR74547 PMT2105
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539 PRO_1229
PMAR146891
PLUT319225
PLUM243265 PLU2507
PINT246198
PHOR70601
PGIN242619
PFUR186497
PDIS435591
PCAR338963
PAST100379
PACN267747
PABY272844
OTSU357244
NWIN323098 NWI_2156
NSP387092
NSP103690
NSEN222891
NPHA348780
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097 NHAM_2556
NGON242231
MXAN246197
MTUB419947 MRA_0760
MTUB336982 TBFG_10765
MTHE349307
MTHE264732
MTHE187420
MTBRV RV0751C
MTBCDC MT0775
MSYN262723
MSTA339860
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MFLA265072
MEXT419610 MEXT_2653
MCAP340047
MBUR259564
MBOV410289 BCG_0802C
MBOV233413 MB0773C
MBAR269797
MART243272
MAEO419665
MACE188937
LXYL281090
LREU557436
LPLA220668 LP_2548
LLAC272622
LJOH257314
LINT363253
LINT267671
LINT189518
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LBRE387344 LVIS_1796
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HMUK485914 HMUK_2760
HMOD498761
HMAR272569
HINF374930
HINF281310
HHEP235279
HDUC233412
HBUT415426
HACI382638
GVIO251221
GURA351605 GURA_0588
GSUL243231 GSU_1372
GOXY290633
GFOR411154
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FRANT
FPHI484022
FNUC190304
FNOD381764
FMAG334413
FJOH376686
ERUM302409
ERUM254945
ECHA205920
ECAN269484
DVUL882
DSP255470
DSP216389
DRED349161
DRAD243230
DPSY177439
DOLE96561
DNOD246195
DETH243164
DDES207559
CVES412965
CTRA471473
CTRA471472
CTET212717
CTEP194439
CSUL444179
CSP78 CAUL_3060
CSP501479
CRUT413404
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPER289380
CNOV386415
CMUR243161
CMIC443906
CMIC31964
CMET456442
CKOR374847
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CJAP155077
CHYD246194
CHUT269798
CHOM360107
CGLU196627
CFET360106
CFEL264202
CEFF196164
CDIP257309 DIP2079
CDES477974
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922 COXBU7E912_1148
CBUR360115 COXBURSA331_A1018
CBUR227377 CBU_0926
CBOT536232
CBOT515621
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CBLO291272
CBLO203907
CAULO CC1574
CABO218497
BTUR314724
BTRI382640
BTHE226186
BSP107806
BQUI283165
BMAL320388
BLON206672
BHER314723
BHEN283166
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BBUR224326
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AVAR240292
AURANTIMONAS
APLE434271
APLE416269
APHA212042
APER272557
AORE350688
ANAE240017
AMAR329726
AMAR234826
ALAI441768 ACL_0082
AFUL224325
AFER243159
ADEH290397
ACEL351607
ABAC204669 ACID345_1903


Organism features enriched in list (features available for 331 out of the 353 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.00075001617
Arrangment:Pairs 0.006902753112
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00183671111
Disease:Wide_range_of_infections 0.00183671111
Endospores:No 9.340e-10154211
Endospores:Yes 0.00369612153
GC_Content_Range4:0-40 1.314e-20173213
GC_Content_Range4:60-100 1.783e-1640145
GC_Content_Range7:0-30 0.00001384047
GC_Content_Range7:30-40 1.106e-13133166
GC_Content_Range7:50-60 0.000025942107
GC_Content_Range7:60-70 5.577e-1537134
Genome_Size_Range5:0-2 2.321e-38150155
Genome_Size_Range5:2-4 0.0006942129197
Genome_Size_Range5:4-6 3.247e-2745184
Genome_Size_Range5:6-10 7.696e-10747
Genome_Size_Range9:0-1 1.427e-72727
Genome_Size_Range9:1-2 3.524e-29123128
Genome_Size_Range9:2-3 7.946e-893120
Genome_Size_Range9:4-5 2.569e-73296
Genome_Size_Range9:5-6 1.340e-181388
Genome_Size_Range9:6-8 1.049e-8538
Gram_Stain:Gram_Neg 8.161e-6164333
Habitat:Host-associated 5.400e-8147206
Habitat:Multiple 0.000025279178
Habitat:Terrestrial 0.00288211031
Motility:No 6.280e-8113151
Motility:Yes 1.609e-16103267
Optimal_temp.:- 0.0090228134257
Optimal_temp.:25-30 0.0002158319
Optimal_temp.:37 0.008935670106
Oxygen_Req:Aerobic 0.000389587185
Oxygen_Req:Anaerobic 2.675e-1288102
Oxygen_Req:Facultative 0.000771497201
Pathogenic_in:Human 0.0034932135213
Shape:Coccus 2.950e-66582
Shape:Irregular_coccus 0.00075001617
Shape:Rod 3.036e-18147347
Shape:Sphere 0.00186511719
Shape:Spiral 0.00022592934
Temp._range:Psychrophilic 0.005922019



Back to top


ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 1
Effective number of orgs (counting one per cluster within 468 clusters): 1

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
PISL384616 ncbi Pyrobaculum islandicum DSM 4184 0.00810483224


Names of the homologs of the genes in the group in each of these orgs
  G7417   G6278   EG11847   EG11176   
PISL384616 PISL_1265PISL_1265PISL_1265PISL_1265


Organism features enriched in list (features available for 1 out of the 1 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Optimal_temp.:100 0.005145813



Back to top


ORGANISMS DEPLETED FOR GROUP:




Back to top


PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GLUCARDEG-PWY (D-glucarate degradation I)1521220.5417
GALACTARDEG-PWY (D-galactarate degradation I)1511200.5299
PWY-561 (superpathway of glyoxylate cycle)1621250.5267
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951390.5164
GLYOXYLATE-BYPASS (glyoxylate cycle)1691260.5087
GALACTCAT-PWY (D-galactonate degradation)104920.5039
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491140.4905
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)1351070.4905
GLYCOLATEMET-PWY (glycolate and glyoxylate degradation I)2701660.4892
PHENYLALANINE-DEG1-PWY (phenylalanine degradation I (aerobic))2891720.4819
SO4ASSIM-PWY (sulfate reduction I (assimilatory))3111780.4695
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651950.4642
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)2121390.4633
PWY-5148 (acyl-CoA hydrolysis)2271450.4616
PWY0-823 (arginine degradation III (arginine decarboxylase/agmatinase pathway))2451520.4598
PWY-6196 (serine racemization)102860.4595
VALDEG-PWY (valine degradation I)2901690.4592
PWY-4041 (γ-glutamyl cycle)2791630.4459
PWY-6087 (4-chlorocatechol degradation)2231410.4450
PWY-5340 (sulfate activation for sulfonation)3851980.4431
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491500.4352
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491500.4352
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001690.4349
PWY-6134 (tyrosine biosynthesis IV)89760.4333
CHOLINE-BETAINE-ANA-PWY (choline degradation I)1351000.4332
PWY-2361 (3-oxoadipate degradation)82720.4329
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))1381010.4294
PWY0-1313 (acetate conversion to acetyl-CoA)3851960.4292
TYRFUMCAT-PWY (tyrosine degradation I)1841220.4277
PWY-6185 (4-methylcatechol degradation (ortho cleavage))107850.4264
PWY-5918 (heme biosynthesis I)2721570.4229
AST-PWY (arginine degradation II (AST pathway))120910.4203
GLUTAMINDEG-PWY (glutamine degradation I)1911240.4199
GLUCONSUPER-PWY (D-gluconate degradation)2291390.4139
ACETATEUTIL-PWY (superpathway of acetate utilization and formation)2371420.4126
PWY-4221 (pantothenate and coenzymeA biosynthesis II)112850.4035
PWY-5386 (methylglyoxal degradation I)3051660.4028
GLYCOCAT-PWY (glycogen degradation I)2461440.4019
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861590.4015
PWY-6374 (vibriobactin biosynthesis)77660.4011



Back to top


PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6278   EG11847   EG11176   
G74170.9996170.999740.999696
G62780.999620.999925
EG118470.999677
EG11176



Back to top


PAIRWISE BLAST SCORES:

  G7417   G6278   EG11847   EG11176   
G74170.0f0-2.7e-252.5e-31
G6278-0.0f0-3.0e-58
EG118471.1e-262.1e-250.0f06.3e-33
EG111762.9e-373.2e-541.6e-360.0f0



Back to top


PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



Back to top


GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G7417 (centered at G7417)
G6278 (centered at G6278)
EG11847 (centered at EG11847)
EG11176 (centered at EG11176)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7417   G6278   EG11847   EG11176   
245/623250/623227/623219/623
AAEO224324:0:Tyes00--
AAUR290340:2:Tyes0318231823182
AAVE397945:0:Tyes1935019351935
ABAC204669:0:Tyes-0--
ABAU360910:0:Tyes0114800
ABOR393595:0:Tyes1511123501235
ABUT367737:0:Tyes-0-0
ACAU438753:0:Tyes0719719719
ACRY349163:8:Tyes18185340534
AEHR187272:0:Tyes00--
AHYD196024:0:Tyes010101010-
ALAI441768:0:Tyes-0--
AMET293826:0:Tyes0000
ASAL382245:5:Tyes--00
ASP1667:3:Tyes0344710623447
ASP232721:2:Tyes1535015351535
ASP62928:0:Tyes00-0
ASP62977:0:Tyes-000
ASP76114:2:Tyes00-0
BABO262698:1:Tno0-0-
BAMB339670:2:Tno166-0-
BAMB339670:3:Tno-0-0
BAMB398577:2:Tno172-0-
BAMB398577:3:Tno-0-0
BAMY326423:0:Tyes00-0
BANT260799:0:Tno00-0
BANT261594:2:Tno00-0
BANT568206:2:Tyes00-0
BANT592021:2:Tno00-0
BBRO257310:0:Tyes032333070-
BCAN483179:1:Tno3700370-
BCEN331271:0:Tno-0-0
BCEN331271:1:Tno0-196-
BCEN331272:2:Tyes194-0-
BCEN331272:3:Tyes-0-0
BCER226900:1:Tyes01709-1709
BCER288681:0:Tno01674-1674
BCER315749:1:Tyes094400
BCER405917:1:Tyes01631-1631
BCER572264:1:Tno01711-1711
BCLA66692:0:Tyes5955950595
BHAL272558:0:Tyes-0-0
BJAP224911:0:Fyes02401030240
BLIC279010:0:Tyes4820-482
BMAL243160:0:Tno0-00
BMAL320389:0:Tyes0-00
BMEL224914:0:Tno0---
BMEL224914:1:Tno-3460-
BMEL359391:1:Tno0-0-
BOVI236:0:Tyes0---
BOVI236:1:Tyes-0302-
BPAR257311:0:Tno021310-
BPER257313:0:Tyes014640-
BPET94624:0:Tyes1851018511851
BPSE272560:0:Tyes780-0-
BPSE272560:1:Tyes-0-0
BPSE320372:0:Tno0201520152015
BPSE320373:0:Tno1085-0-
BPSE320373:1:Tno-0-0
BPUM315750:0:Tyes0000
BSP36773:1:Tyes0-240-
BSP36773:2:Tyes-0-0
BSP376:0:Tyes0-5704011
BSUB:0:Tyes-0-0
BSUI204722:1:Tyes3580358-
BSUI470137:1:Tno3670367-
BTHA271848:0:Tno0-822-
BTHA271848:1:Tno-0-0
BTHU281309:1:Tno01647-1647
BTHU412694:1:Tno0148801488
BVIE269482:6:Tyes0-0-
BVIE269482:7:Tyes-0-0
BWEI315730:4:Tyes0165801658
BXEN266265:0:Tyes-0-0
BXEN266265:1:Tyes0-1058-
CACE272562:1:Tyes-0-0
CAULO:0:Tyes-0--
CBEI290402:0:Tyes-0-0
CBOT508765:1:Tyes-0-0
CBUR227377:1:Tyes--0-
CBUR360115:1:Tno--0-
CBUR434922:2:Tno--0-
CDIF272563:1:Tyes0000
CDIP257309:0:Tyes0---
CMAQ397948:0:Tyes008840
CPEL335992:0:Tyes-0830
CPER195102:1:Tyes-0-0
CPER195103:0:Tno-0-0
CPSY167879:0:Tyes1363013630
CSAL290398:0:Tyes14460-0
CSP78:2:Tyes-0--
CVIO243365:0:Tyes0183001830
DARO159087:0:Tyes1101
DGEO319795:0:Tyes0000
DHAF138119:0:Tyes0000
DSHI398580:0:Tyes0---
DSHI398580:5:Tyes-0--
ECAR218491:0:Tyes775000
ECOL199310:0:Tno2618041233189
ECOL316407:0:Tno2234028852617
ECOL331111:6:Tno2379037042929
ECOL362663:0:Tno2146035102646
ECOL364106:1:Tno2560039083014
ECOL405955:2:Tyes2256034542716
ECOL409438:6:Tyes2497037082928
ECOL413997:0:Tno2137033352543
ECOL439855:4:Tno2776035902776
ECOL469008:0:Tno374251535240
ECOL481805:0:Tno402254735780
ECOL585034:0:Tno2298035182731
ECOL585035:0:Tno2406036832899
ECOL585055:0:Tno2462037852986
ECOL585056:2:Tno3062038603062
ECOL585057:0:Tno5065060506
ECOL585397:0:Tno2588039503168
ECOL83334:0:Tno3515043463515
ECOLI:0:Tno2281034432674
ECOO157:0:Tno3528043723528
EFAE226185:3:Tyes00--
EFER585054:1:Tyes0000
ELIT314225:0:Tyes0017090
ESP42895:1:Tyes0000
FALN326424:0:Tyes00--
FSP106370:0:Tyes00--
FSP1855:0:Tyes-0-0
GBET391165:0:Tyes-0-0
GKAU235909:1:Tyes0000
GMET269799:1:Tyes-000
GSUL243231:0:Tyes-0--
GTHE420246:1:Tyes0000
GURA351605:0:Tyes-0--
HARS204773:0:Tyes-000
HAUR316274:2:Tyes0000
HCHE349521:0:Tyes600600
HHAL349124:0:Tyes00--
HINF71421:0:Tno0-0-
HMUK485914:1:Tyes--0-
HNEP81032:0:Tyes9120912912
HSOM205914:1:Tyes0-0-
HSOM228400:0:Tno0-0-
ILOI283942:0:Tyes05300-
JSP290400:1:Tyes-0-0
JSP375286:0:Tyes-000
KPNE272620:2:Tyes0218621862186
KRAD266940:2:Fyes00-0
LBRE387344:2:Tyes-0--
LCAS321967:1:Tyes-0-0
LCHO395495:0:Tyes5131000
LINN272626:1:Tno0000
LLAC272623:0:Tyes-0-0
LMES203120:1:Tyes00--
LMON169963:0:Tno0000
LMON265669:0:Tyes0000
LPLA220668:0:Tyes-0--
LPNE272624:0:Tno0-0-
LPNE297245:1:Fno0-0-
LPNE297246:1:Fyes0-0-
LPNE400673:0:Tno0-0-
LSAK314315:0:Tyes00-0
LSPH444177:1:Tyes9090
LWEL386043:0:Tyes0000
MABS561007:1:Tyes0-3312-
MAER449447:0:Tyes00-0
MAQU351348:2:Tyes0160301603
MAVI243243:0:Tyes0-0-
MBOV233413:0:Tno--0-
MBOV410289:0:Tno--0-
MCAP243233:0:Tyes0000
MEXT419610:0:Tyes-0--
MGIL350054:3:Tyes0-0-
MLOT266835:2:Tyes0000
MMAG342108:0:Tyes000-
MMAR394221:0:Tyes0100-
MPET420662:1:Tyes2781000
MSME246196:0:Tyes0000
MSP164756:1:Tno0000
MSP164757:0:Tno0000
MSP189918:2:Tyes0000
MSP266779:1:Tyes-0-0
MSP266779:3:Tyes0-0-
MSP400668:0:Tyes24550-0
MSP409:2:Tyes034634763463
MSUC221988:0:Tyes1330000
MTBCDC:0:Tno--0-
MTBRV:0:Tno--0-
MTUB336982:0:Tno--0-
MTUB419947:0:Tyes--0-
MVAN350058:0:Tyes0-0-
NARO279238:0:Tyes0-0-
NEUR228410:0:Tyes0000
NEUT335283:2:Tyes-000
NFAR247156:2:Tyes3663-0-
NHAM323097:2:Tyes--0-
NMUL323848:3:Tyes-0-0
NOCE323261:1:Tyes00--
NSP35761:1:Tyes0-0-
NWIN323098:0:Tyes--0-
OANT439375:4:Tyes0---
OANT439375:5:Tyes-000
OCAR504832:0:Tyes0787878
OIHE221109:0:Tyes2510-0
PAER178306:0:Tyes00-0
PAER208963:0:Tyes2975218002180
PAER208964:0:Tno07642860764
PARC259536:0:Tyes0000
PARS340102:0:Tyes0000
PATL342610:0:Tyes012300-
PCRY335284:1:Tyes0000
PENT384676:0:Tyes0909909909
PFLU205922:0:Tyes09070907
PFLU216595:1:Tyes520000
PFLU220664:0:Tyes25619370937
PHAL326442:1:Tyes0000
PING357804:0:Tyes00--
PISL384616:0:Tyes0000
PLUM243265:0:Fyes0---
PMAR167539:0:Tyes-0--
PMAR74547:0:Tyes-0--
PMEN399739:0:Tyes0142101421
PMUL272843:1:Tyes0-0-
PNAP365044:8:Tyes0133513351335
PPEN278197:0:Tyes-0--
PPRO298386:1:Tyes--0-
PPRO298386:2:Tyes-0-0
PPUT160488:0:Tno364000
PPUT351746:0:Tyes2966000
PPUT76869:0:Tno811000
PSP117:0:Tyes52080-0
PSP296591:2:Tyes23896340634
PSP312153:0:Tyes68406070
PSP56811:2:Tyes--0-
PSTU379731:0:Tyes0000
PSYR205918:0:Tyes0-2280
PSYR223283:2:Tyes4224004224
RCAS383372:0:Tyes0000
RDEN375451:4:Tyes2909029090
RETL347834:4:Tyes0-0-
RETL347834:5:Tyes-0-0
REUT264198:2:Tyes--0-
REUT264198:3:Tyes01892-70
REUT381666:1:Tyes--2490
REUT381666:2:Tyes01964--
RFER338969:1:Tyes025920-
RLEG216596:5:Tyes0---
RLEG216596:6:Tyes-000
RMET266264:2:Tyes19918071990
RPAL316055:0:Tyes-0403-
RPAL316056:0:Tyes0-0-
RPAL316057:0:Tyes0-0-
RPAL316058:0:Tyes0-0-
RPOM246200:1:Tyes1729000
RRUB269796:1:Tyes0-0-
RSOL267608:0:Tyes0-0-
RSOL267608:1:Tyes-0-0
RSP101510:3:Fyes0168116811034
RSP357808:0:Tyes0000
RSPH272943:4:Tyes-00-
RSPH349101:2:Tno-00-
RSPH349102:5:Tyes00--
RXYL266117:0:Tyes1116011161116
SALA317655:1:Tyes0012240
SAVE227882:1:Fyes0000
SBAL399599:3:Tyes02350235
SBAL402882:1:Tno02240224
SBOY300268:1:Tyes01971051197
SCO:2:Fyes0000
SDEN318161:0:Tyes03510351
SDYS300267:1:Tyes0000
SENT209261:0:Tno79501217795
SENT220341:0:Tno2568029892568
SENT295319:0:Tno55401599884
SENT321314:2:Tno2331034172683
SENT454169:2:Tno2389035762814
SERY405948:0:Tyes4670004670
SFLE198214:0:Tyes007820
SFLE373384:0:Tno0378809378
SFUM335543:0:Tyes00-0
SGLO343509:3:Tyes---0
SHAL458817:0:Tyes111801118-
SHIGELLA:0:Tno003860
SLAC55218:1:Fyes-000
SLOI323850:0:Tyes63063-
SMED366394:1:Tyes--00
SMED366394:2:Tyes110--
SMEL266834:1:Tyes0111111
SONE211586:1:Tyes0107401074
SPEA398579:0:Tno3050305-
SPRO399741:1:Tyes0-00
SSED425104:0:Tyes1194119401194
SSOL273057:0:Tyes0000
SSON300269:1:Tyes03761100376
SSP1131:0:Tyes0000
SSP1148:0:Tyes0--0
SSP292414:2:Tyes0000
SSP644076:7:Fyes-000
SSP64471:0:Tyes00-0
SSP84588:0:Tyes00-0
SSP94122:1:Tyes21602160
STHE292459:0:Tyes0--0
STYP99287:1:Tyes2378034752707
TDEN243275:0:Tyes00-0
TDEN292415:0:Tyes00-0
TFUS269800:0:Tyes0000
TROS309801:0:Tyes179000
VCHO:1:Fyes00-0
VCHO345073:0:Tno00-0
VEIS391735:1:Tyes1681018310
VFIS312309:1:Tyes00-0
VPAR223926:0:Tyes5008010500
VVUL196600:1:Tyes005940
VVUL216895:0:Tno1064106401064
XAUT78245:1:Tyes013495121349
XAXO190486:0:Tyes0000
XCAM190485:0:Tyes0-00
XCAM314565:0:Tno0-00
XCAM316273:0:Tno0000
XCAM487884:0:Tno0-00
XORY291331:0:Tno0000
XORY342109:0:Tyes0000
XORY360094:0:Tno0000



Back to top