CANDIDATE ID: 329

CANDIDATE ID: 329

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9962583e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6465 (lolA) (b0891)
   Products of gene:
     - G6465-MONOMER (periplasmic chaperone, effects translocation of lipoproteins from inner membrane to outer)

- G6464 (ftsK) (b0890)
   Products of gene:
     - G6464-MONOMER (essential cell division protein FtsK)
     - CPLX0-3959 (Xer site-specific recombination system)

- EG12690 (rarA) (b0892)
   Products of gene:
     - EG12690-MONOMER (recombination factor)

- EG11032 (trxB) (b0888)
   Products of gene:
     - THIOREDOXIN-REDUCT-NADPH-MONOMER (thioredoxin reductase monomer)
     - THIOREDOXIN-REDUCT-NADPH-CPLX (thioredoxin reductase)
       Reactions:
        an oxidized thioredoxin + NADPH + H+  ->  a reduced thioredoxin + NADP+
         In pathways
         THIOREDOX-PWY (thioredoxin pathway)



Back to top


ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 280
Effective number of orgs (counting one per cluster within 468 clusters): 196

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM43
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A4
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110184
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103314
XFAS405440 ncbi Xylella fastidiosa M124
XFAS183190 ncbi Xylella fastidiosa Temecula14
XFAS160492 ncbi Xylella fastidiosa 9a5c4
XCAM487884 Xanthomonas campestris pv. paulliniae4
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-104
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80044
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339134
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3064
XAUT78245 ncbi Xanthobacter autotrophicus Py23
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VEIS391735 ncbi Verminephrobacter eiseniae EF01-24
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TTUR377629 ncbi Teredinibacter turnerae T79014
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB43
TSP1755 Thermoanaerobacter sp.3
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332233
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252594
TCRU317025 ncbi Thiomicrospira crunogena XCL-24
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
STHE292459 ncbi Symbiobacterium thermophilum IAM 148633
SSP94122 ncbi Shewanella sp. ANA-34
SSP644076 Silicibacter sp. TrichCH4B3
SSP292414 ncbi Ruegeria sp. TM10403
SSON300269 ncbi Shigella sonnei Ss0464
SSED425104 ncbi Shewanella sediminis HAW-EB34
SPRO399741 ncbi Serratia proteamaculans 5684
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-14
SMEL266834 ncbi Sinorhizobium meliloti 10213
SMED366394 ncbi Sinorhizobium medicae WSM4193
SLOI323850 ncbi Shewanella loihica PV-44
SLAC55218 Ruegeria lacuscaerulensis3
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23383
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SDEN318161 ncbi Shewanella denitrificans OS2174
SDEG203122 ncbi Saccharophagus degradans 2-404
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
SALA317655 ncbi Sphingopyxis alaskensis RB22563
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170253
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170293
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.13
RSP101510 ncbi Rhodococcus jostii RHA13
RSOL267608 ncbi Ralstonia solanacearum GMI10004
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111703
RPOM246200 ncbi Ruegeria pomeroyi DSS-33
RPAL316058 ncbi Rhodopseudomonas palustris HaA23
RPAL316057 ncbi Rhodopseudomonas palustris BisB53
RPAL316056 ncbi Rhodopseudomonas palustris BisB183
RPAL316055 ncbi Rhodopseudomonas palustris BisA533
RPAL258594 ncbi Rhodopseudomonas palustris CGA0093
RMET266264 ncbi Ralstonia metallidurans CH344
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38413
RFER338969 ncbi Rhodoferax ferrireducens T1184
REUT381666 ncbi Ralstonia eutropha H164
REUT264198 ncbi Ralstonia eutropha JMP1344
RETL347834 ncbi Rhizobium etli CFN 423
RDEN375451 ncbi Roseobacter denitrificans OCh 1143
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP56811 Psychrobacter sp.4
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-13
PSP296591 ncbi Polaromonas sp. JS6664
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS94
PNAP365044 ncbi Polaromonas naphthalenivorans CJ24
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PMEN399739 ncbi Pseudomonas mendocina ymp4
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 374
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PCRY335284 ncbi Psychrobacter cryohalolentis K54
PCAR338963 ncbi Pelobacter carbinolicus DSM 23803
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PARC259536 ncbi Psychrobacter arcticus 273-44
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
OCAR504832 ncbi Oligotropha carboxidovorans OM53
OANT439375 ncbi Ochrobactrum anthropi ATCC 491883
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2553
NOCE323261 ncbi Nitrosococcus oceani ATCC 197073
NMUL323848 ncbi Nitrosospira multiformis ATCC 251964
NMEN374833 ncbi Neisseria meningitidis 0534424
NMEN272831 ncbi Neisseria meningitidis FAM184
NMEN122587 ncbi Neisseria meningitidis Z24914
NMEN122586 ncbi Neisseria meningitidis MC584
NHAM323097 ncbi Nitrobacter hamburgensis X143
NGON242231 ncbi Neisseria gonorrhoeae FA 10904
NFAR247156 ncbi Nocardia farcinica IFM 101523
NEUT335283 ncbi Nitrosomonas eutropha C914
NEUR228410 ncbi Nitrosomonas europaea ATCC 197184
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124443
MXAN246197 ncbi Myxococcus xanthus DK 16223
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-13
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra3
MTUB336982 ncbi Mycobacterium tuberculosis F113
MTHE264732 ncbi Moorella thermoacetica ATCC 390733
MTBRV ncbi Mycobacterium tuberculosis H37Rv3
MTBCDC ncbi Mycobacterium tuberculosis CDC15513
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSP409 Methylobacterium sp.3
MSP400668 ncbi Marinomonas sp. MWYL14
MSP266779 ncbi Chelativorans sp. BNC13
MSP189918 ncbi Mycobacterium sp. KMS3
MSP164757 ncbi Mycobacterium sp. JLS3
MSP164756 ncbi Mycobacterium sp. MCS3
MSME246196 ncbi Mycobacterium smegmatis MC2 1553
MPET420662 ncbi Methylibium petroleiphilum PM14
MMAR394221 ncbi Maricaulis maris MCS103
MMAG342108 ncbi Magnetospirillum magneticum AMB-13
MLOT266835 ncbi Mesorhizobium loti MAFF3030993
MLEP272631 ncbi Mycobacterium leprae TN3
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK3
MFLA265072 ncbi Methylobacillus flagellatus KT4
MEXT419610 ncbi Methylobacterium extorquens PA13
MCAP243233 ncbi Methylococcus capsulatus Bath4
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P23
MBOV233413 ncbi Mycobacterium bovis AF2122/973
MAVI243243 ncbi Mycobacterium avium 1043
MAQU351348 ncbi Marinobacter aquaeolei VT84
MABS561007 ncbi Mycobacterium abscessus ATCC 199773
LPNE400673 ncbi Legionella pneumophila Corby4
LPNE297246 ncbi Legionella pneumophila Paris4
LPNE297245 ncbi Legionella pneumophila Lens4
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 14
LHEL405566 ncbi Lactobacillus helveticus DPC 45713
LCHO395495 ncbi Leptothrix cholodnii SP-64
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP375286 ncbi Janthinobacterium sp. Marseille4
JSP290400 ncbi Jannaschia sp. CCS13
ILOI283942 ncbi Idiomarina loihiensis L2TR4
HSOM228400 ncbi Haemophilus somnus 23364
HSOM205914 ncbi Haemophilus somnus 129PT4
HNEP81032 Hyphomonas neptunium3
HMOD498761 ncbi Heliobacterium modesticaldum Ice13
HINF71421 ncbi Haemophilus influenzae Rd KW204
HINF374930 ncbi Haemophilus influenzae PittEE4
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HHAL349124 ncbi Halorhodospira halophila SL14
HDUC233412 ncbi Haemophilus ducreyi 35000HP4
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HARS204773 ncbi Herminiimonas arsenicoxydans4
GURA351605 ncbi Geobacter uraniireducens Rf43
GSUL243231 ncbi Geobacter sulfurreducens PCA3
GOXY290633 ncbi Gluconobacter oxydans 621H3
GMET269799 ncbi Geobacter metallireducens GS-153
GBET391165 ncbi Granulibacter bethesdensis CGDNIH13
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-003
FTUL418136 ncbi Francisella tularensis tularensis WY96-34183
FTUL401614 ncbi Francisella novicida U1124
FTUL393115 ncbi Francisella tularensis tularensis FSC1983
FTUL393011 ncbi Francisella tularensis holarctica OSU183
FTUL351581 Francisella tularensis holarctica FSC2003
FRANT ncbi Francisella tularensis tularensis SCHU S43
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250174
ESP42895 Enterobacter sp.4
ELIT314225 ncbi Erythrobacter litoralis HTCC25943
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DSHI398580 ncbi Dinoroseobacter shibae DFL 123
DNOD246195 ncbi Dichelobacter nodosus VCS1703A4
DARO159087 ncbi Dechloromonas aromatica RCB4
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CSP78 Caulobacter sp.3
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CPSY167879 ncbi Colwellia psychrerythraea 34H4
CPHY357809 ncbi Clostridium phytofermentans ISDg3
CJEI306537 ncbi Corynebacterium jeikeium K4113
CJAP155077 Cellvibrio japonicus4
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29013
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130323
CEFF196164 ncbi Corynebacterium efficiens YS-3143
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131293
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1114
CBUR360115 ncbi Coxiella burnetii RSA 3314
CBUR227377 ncbi Coxiella burnetii RSA 4934
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN3
CBLO203907 ncbi Candidatus Blochmannia floridanus3
CAULO ncbi Caulobacter crescentus CB153
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTRI382640 ncbi Bartonella tribocorum CIP 1054763
BTHA271848 ncbi Burkholderia thailandensis E2644
BSUI470137 ncbi Brucella suis ATCC 234453
BSUI204722 ncbi Brucella suis 13303
BSP376 Bradyrhizobium sp.3
BSP36773 Burkholderia sp.4
BQUI283165 ncbi Bartonella quintana Toulouse3
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii4
BPER257313 ncbi Bordetella pertussis Tohama I4
BPAR257311 ncbi Bordetella parapertussis 128224
BOVI236 Brucella ovis3
BMEL359391 ncbi Brucella melitensis biovar Abortus 23083
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M3
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1103
BHEN283166 ncbi Bartonella henselae Houston-13
BCIC186490 Candidatus Baumannia cicadellinicola3
BCEN331272 ncbi Burkholderia cenocepacia HI24243
BCEN331271 ncbi Burkholderia cenocepacia AU 10543
BCAN483179 ncbi Brucella canis ATCC 233653
BBRO257310 ncbi Bordetella bronchiseptica RB504
BBAC360095 ncbi Bartonella bacilliformis KC5833
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9413
ASP76114 ncbi Aromatoleum aromaticum EbN14
ASP62977 ncbi Acinetobacter sp. ADP14
ASP62928 ncbi Azoarcus sp. BH724
ASP232721 ncbi Acidovorax sp. JS424
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AHYD196024 Aeromonas hydrophila dhakensis4
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232703
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ACRY349163 ncbi Acidiphilium cryptum JF-53
ACAU438753 ncbi Azorhizobium caulinodans ORS 5713
ABOR393595 ncbi Alcanivorax borkumensis SK24
ABAU360910 ncbi Bordetella avium 197N4
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3454
AAVE397945 ncbi Acidovorax citrulli AAC00-14


Names of the homologs of the genes in the group in each of these orgs
  G6465   G6464   EG12690   EG11032   
ZMOB264203 ZMO1702ZMO0121ZMO1142
YPSE349747 YPSIP31758_2595YPSIP31758_2596YPSIP31758_2594YPSIP31758_2598
YPSE273123 YPTB1402YPTB1401YPTB1403YPTB1399
YPES386656 YPDSF_2318YPDSF_2319YPDSF_2317YPDSF_2321
YPES377628 YPN_2603YPN_2604YPN_2602YPN_2606
YPES360102 YPA_0667YPA_0666YPA_0668YPA_0664
YPES349746 YPANGOLA_A1614YPANGOLA_A1613YPANGOLA_A1615YPANGOLA_A1611
YPES214092 YPO1377YPO1376YPO1378YPO1374
YPES187410 Y2798Y2800Y2797Y2802
YENT393305 YE1526YE1525YE1527YE1523
XORY360094 XOOORF_2775XOOORF_2777XOOORF_2772XOOORF_2778
XORY342109 XOO2403XOO2405XOO2401XOO2406
XORY291331 XOO2544XOO2546XOO2542XOO2547
XFAS405440 XFASM12_0795XFASM12_0793XFASM12_0796XFASM12_0791
XFAS183190 PD_0672PD_0670PD_0673PD_0669
XFAS160492 XF1452XF1450XF1453XF1448
XCAM487884 XCC-B100_2273XCC-B100_2271XCC-B100_2275XCC-B100_2270
XCAM316273 XCAORF_2254XCAORF_2252XCAORF_2255XCAORF_2250
XCAM314565 XC_2211XC_2213XC_2209XC_2214
XCAM190485 XCC1974XCC1972XCC1976XCC1971
XAXO190486 XAC2008XAC2006XAC2010XAC2005
XAUT78245 XAUT_1841XAUT_4770XAUT_2753
VVUL216895 VV1_2949VV1_2950VV1_2947VV1_2810
VVUL196600 VV1323VV1322VV1324VV1455
VPAR223926 VP1106VP1105VP1107VP1251
VFIS312309 VF0906VF0905VF0907VF0902
VEIS391735 VEIS_1760VEIS_1759VEIS_1761VEIS_1758
VCHO345073 VC0395_A0626VC0395_A1493VC0395_A0627VC0395_A0803
VCHO VC1107VC1903VC1108VC1182
TTUR377629 TERTU_1970TERTU_1969TERTU_1971TERTU_1968
TTEN273068 TTE1378TTE1784TTE2220
TSP1755 TETH514_1631TETH514_1284TETH514_0924
TPSE340099 TETH39_1195TETH39_0710TETH39_0445
TDEN292415 TBD_1497TBD_1002TBD_1496TBD_1001
TCRU317025 TCR_0765TCR_0764TCR_0766TCR_0763
STYP99287 STM0961STM0960STM0962STM0958
STHE292459 STH1561STH2401STH1072
SSP94122 SHEWANA3_2051SHEWANA3_2050SHEWANA3_2052SHEWANA3_2047
SSP644076 SCH4B_3436SCH4B_1072SCH4B_3922
SSP292414 TM1040_0060TM1040_0288TM1040_0614
SSON300269 SSO_0892SSO_0891SSO_0893SSO_0889
SSED425104 SSED_2128SSED_2127SSED_2129SSED_2124
SPRO399741 SPRO_1684SPRO_1683SPRO_1685SPRO_1681
SPEA398579 SPEA_2232SPEA_2233SPEA_2231SPEA_2258
SONE211586 SO_2307SO_2306SO_2308SO_2303
SMEL266834 SMC03808SMC01279SMC01224
SMED366394 SMED_3052SMED_1015SMED_1248
SLOI323850 SHEW_2023SHEW_2024SHEW_2022SHEW_2028
SLAC55218 SL1157_1457SL1157_1603SL1157_2002
SHIGELLA LOLAFTSKYCAJTRXB
SHAL458817 SHAL_2216SHAL_2217SHAL_2215SHAL_2024
SGLO343509 SG1109SG1108SG1110SG1106
SFLE373384 SFV_0882SFV_0881SFV_0883SFV_0879
SFLE198214 AAN42483.1AAN42482.1AAN42484.1AAN42480.1
SERY405948 SACE_5889SACE_2048SACE_7384
SENT454169 SEHA_C1060SEHA_C1059SEHA_C1061SEHA_C1057
SENT321314 SCH_0915SCH_0914SCH_0916SCH_0912
SENT295319 SPA1837SPA1838SPA1836SPA1840
SENT220341 STY0959STY0958STY0960STY0956
SENT209261 T1973T1974T1972T1976
SDYS300267 SDY_2370SDY_2371SDY_2369SDY_2373
SDEN318161 SDEN_1744SDEN_1743SDEN_1745SDEN_1713
SDEG203122 SDE_1694SDE_1693SDE_1695SDE_1692
SBOY300268 SBO_0824SBO_0823SBO_0825SBO_0821
SBAL402882 SHEW185_2214SHEW185_2215SHEW185_2213SHEW185_2218
SBAL399599 SBAL195_2322SBAL195_2323SBAL195_2321SBAL195_2326
SALA317655 SALA_2669SALA_2156SALA_0145
RSPH349102 RSPH17025_2900RSPH17025_2506RSPH17025_0256
RSPH349101 RSPH17029_0145RSPH17029_0389RSPH17029_0228
RSPH272943 RSP_1495RSP_1743RSP_1576
RSP101510 RHA1_RO06750RHA1_RO07134RHA1_RO03650
RSOL267608 RSC2340RSP0884RSC2338RSC2342
RRUB269796 RRU_A3705RRU_A2660RRU_A2898
RPOM246200 SPO_3416SPO_0515SPO_0903
RPAL316058 RPB_0377RPB_2324RPB_1512
RPAL316057 RPD_0444RPD_3155RPD_1453
RPAL316056 RPC_0276RPC_3416RPC_3838
RPAL316055 RPE_0398RPE_3556RPE_3964
RPAL258594 RPA0279RPA3220RPA4075
RMET266264 RMET_0686RMET_1596RMET_0694RMET_0684
RLEG216596 RL4563RL1807RL3428
RFER338969 RFER_3177RFER_3178RFER_3176RFER_3179
REUT381666 H16_A0755H16_A1582H16_A0763H16_A0753
REUT264198 REUT_A2599REUT_A2600REUT_A2595REUT_A2601
RETL347834 RHE_CH03972RHE_CH01708RHE_CH02975
RDEN375451 RD1_0033RD1_1439RD1_3505
PSYR223283 PSPTO_3348PSPTO_3349PSPTO_3347PSPTO_1178
PSYR205918 PSYR_3178PSYR_3179PSYR_3177PSYR_1016
PSTU379731 PST_2292PST_2293PST_2291PST_2294
PSP56811 PSYCPRWF_0893PSYCPRWF_0620PSYCPRWF_0257PSYCPRWF_0619
PSP312153 PNUC_0690PNUC_0748PNUC_0689
PSP296591 BPRO_3798BPRO_3799BPRO_3797BPRO_3801
PPUT76869 PPUTGB1_3608PPUTGB1_3609PPUTGB1_3607PPUTGB1_0820
PPUT351746 PPUT_1830PPUT_1829PPUT_1831PPUT_0809
PPUT160488 PP_4003PP_4004PP_4002PP_0786
PPRO298386 PBPRA1163PBPRA1162PBPRA1164PBPRA1159
PNAP365044 PNAP_3210PNAP_3211PNAP_3209PNAP_3213
PMUL272843 PM0256PM0255PM0257PM0573
PMEN399739 PMEN_2387PMEN_2388PMEN_2386PMEN_2389
PLUM243265 PLU1602PLU1601PLU1603PLU1599
PING357804 PING_1663PING_1662PING_1664PING_2209
PHAL326442 PSHAA1715PSHAA1716PSHAA1714PSHAA1720
PFLU220664 PFL_3879PFL_3880PFL_3878PFL_0945
PFLU216595 PFLU3800PFLU3801PFLU3799PFLU5162
PFLU205922 PFL_3585PFL_3586PFL_3584PFL_0887
PENT384676 PSEEN2213PSEEN2212PSEEN2214PSEEN0924
PCRY335284 PCRYO_1753PCRYO_0430PCRYO_0103PCRYO_0429
PCAR338963 PCAR_0647PCAR_2328PCAR_2943
PATL342610 PATL_2459PATL_2460PATL_2458PATL_2370
PARC259536 PSYC_1571PSYC_0389PSYC_0094PSYC_0388
PAER208964 PA2614PA2615PA2613PA2616
PAER208963 PA14_30310PA14_30290PA14_30320PA14_30280
OCAR504832 OCAR_4355OCAR_5709OCAR_5125
OANT439375 OANT_0960OANT_1983OANT_1664
NWIN323098 NWI_0083NWI_1392NWI_2453
NOCE323261 NOC_0348NOC_0347NOC_0345
NMUL323848 NMUL_A0178NMUL_A0176NMUL_A0179NMUL_A0023
NMEN374833 NMCC_0570NMCC_1226NMCC_1143NMCC_1239
NMEN272831 NMC0566NMC1251NMC1159NMC1261
NMEN122587 NMA0830NMA1527NMA1433NMA1538
NMEN122586 NMB_0622NMB_1314NMB_1258NMB_1324
NHAM323097 NHAM_0090NHAM_1573NHAM_2880
NGON242231 NGO0205NGO0851NGO0696NGO0580
NFAR247156 NFA38640NFA36450NFA56620
NEUT335283 NEUT_2489NEUT_2488NEUT_2490NEUT_0792
NEUR228410 NE1052NE1051NE1053NE1929
NARO279238 SARO_0435SARO_2547SARO_2343
MXAN246197 MXAN_1460MXAN_2846MXAN_1954
MVAN350058 MVAN_2393MVAN_2635MVAN_6067
MTUB419947 MRA_2774MRA_2588MRA_3952
MTUB336982 TBFG_12761TBFG_12580TBFG_13948
MTHE264732 MOTH_1072MOTH_1656MOTH_2420
MTBRV RV2748CRV2559CRV3913
MTBCDC MT2819MT2636MT4032
MSUC221988 MS1452MS1454MS1451MS0951
MSP409 M446_4908M446_6365M446_3793
MSP400668 MMWYL1_3255MMWYL1_3256MMWYL1_3254MMWYL1_3225
MSP266779 MESO_3235MESO_1650MESO_2112
MSP189918 MKMS_2167MKMS_2372MKMS_5491
MSP164757 MJLS_2108MJLS_2364MJLS_5778
MSP164756 MMCS_2121MMCS_2325MMCS_5402
MSME246196 MSMEG_2690MSMEG_3021MSMEG_6933
MPET420662 MPE_A1121MPE_A1120MPE_A1122MPE_A1118
MMAR394221 MMAR10_2944MMAR10_1767MMAR10_2145
MMAG342108 AMB0016AMB3482AMB0663
MLOT266835 MLL4243MLR0329MLL2552
MLEP272631 ML0977ML0510ML2703
MGIL350054 MFLV_3994MFLV_3766MFLV_0839
MFLA265072 MFLA_1125MFLA_1124MFLA_1128MFLA_1119
MEXT419610 MEXT_4034MEXT_0275MEXT_1092
MCAP243233 MCA_1783MCA_1695MCA_1782MCA_1694
MBOV410289 BCG_2764CBCG_2582CBCG_0019
MBOV233413 MB2769CMB2589CMB3944
MAVI243243 MAV_3639MAV_3435MAV_5301
MAQU351348 MAQU_1549MAQU_1550MAQU_1548MAQU_1753
MABS561007 MAB_3074CMAB_2853CMAB_4940
LPNE400673 LPC_1206LPC_1207LPC_1205LPC_1208
LPNE297246 LPP1729LPP1730LPP1728LPP1731
LPNE297245 LPL1729LPL1730LPL1728LPL1731
LPNE272624 LPG1765LPG1766LPG1764LPG1767
LHEL405566 LHV_0707LHV_1284LHV_1713
LCHO395495 LCHO_0757LCHO_0756LCHO_0758LCHO_0754
KPNE272620 GKPORF_B5364GKPORF_B5363GKPORF_B5365GKPORF_B5360
JSP375286 MMA_1155MMA_1154MMA_1156MMA_1153
JSP290400 JANN_0428JANN_0621JANN_3338
ILOI283942 IL0666IL0667IL0665IL0670
HSOM228400 HSM_1283HSM_0376HSM_1282HSM_1028
HSOM205914 HS_0814HS_1186HS_0813HS_1148
HNEP81032 HNE_3541HNE_2642HNE_0548
HMOD498761 HM1_2337HM1_2414HM1_0984
HINF71421 HI_1591HI_1592HI_1590HI_1158
HINF374930 CGSHIEE_05575CGSHIEE_05580CGSHIEE_05570CGSHIEE_06250
HINF281310 NTHI1456NTHI1455NTHI1458NTHI1327
HHAL349124 HHAL_1394HHAL_1396HHAL_1393HHAL_2289
HDUC233412 HD_1237HD_1476HD_1296HD_0333
HCHE349521 HCH_02446HCH_02445HCH_02447HCH_02344
HARS204773 HEAR1019HEAR1018HEAR1020HEAR1017
GURA351605 GURA_4392GURA_1704GURA_4032
GSUL243231 GSU_3112GSU_2067GSU_0488
GOXY290633 GOX0803GOX1664GOX0131
GMET269799 GMET_0367GMET_0939GMET_3070
GBET391165 GBCGDNIH1_2128GBCGDNIH1_0581GBCGDNIH1_0720
FTUL458234 FTA_1805FTA_1804FTA_1656
FTUL418136 FTW_0278FTW_0279FTW_1580
FTUL401614 FTN_0293FTN_0294FTN_1413FTN_0580
FTUL393115 FTF1636FTF1635FTF0489C
FTUL393011 FTH_1643FTH_1642FTH_1519
FTUL351581 FTL_1706FTL_1705FTL_1571
FRANT LOLAFTSKTRXB
FPHI484022 FPHI_0532FPHI_0531FPHI_1274FPHI_0259
ESP42895 ENT638_1415ENT638_1414ENT638_1416ENT638_1412
ELIT314225 ELI_11845ELI_01935ELI_04700
EFER585054 EFER_1040EFER_1039EFER_1041EFER_1036
ECOO157 LOLAFTSKYCAJTRXB
ECOL83334 ECS0976ECS0975ECS0977ECS0973
ECOL585397 ECED1_0865ECED1_0864ECED1_0866ECED1_0862
ECOL585057 ECIAI39_2257ECIAI39_2260ECIAI39_2256ECIAI39_2262
ECOL585056 ECUMN_1086ECUMN_1085ECUMN_1087ECUMN_1083
ECOL585055 EC55989_0936EC55989_0935EC55989_0937EC55989_0933
ECOL585035 ECS88_0922ECS88_0921ECS88_0923ECS88_0917
ECOL585034 ECIAI1_0931ECIAI1_0930ECIAI1_0932ECIAI1_0928
ECOL481805 ECOLC_2705ECOLC_2706ECOLC_2704ECOLC_2708
ECOL469008 ECBD_2704ECBD_2705ECBD_2703ECBD_2707
ECOL439855 ECSMS35_2229ECSMS35_2230ECSMS35_2228ECSMS35_2233
ECOL413997 ECB_00895ECB_00894ECB_00896ECB_00892
ECOL409438 ECSE_0949ECSE_0948ECSE_0950ECSE_0946
ECOL405955 APECO1_1198APECO1_1199APECO1_1197APECO1_1201
ECOL364106 UTI89_C0906UTI89_C0905UTI89_C0907UTI89_C0903
ECOL362663 ECP_0905ECP_0904ECP_0906ECP_0902
ECOL331111 ECE24377A_0966ECE24377A_0965ECE24377A_0967ECE24377A_0962
ECOL316407 ECK0882:JW0874:B0891ECK0881:JW0873:B0890ECK0883:JW0875:B0892ECK0879:JW0871:B0888
ECOL199310 C1028C1027C1029C1025
ECAR218491 ECA2646ECA2647ECA2645ECA2649
DSHI398580 DSHI_0059DSHI_0313DSHI_2654
DNOD246195 DNO_0484DNO_0483DNO_0485DNO_1099
DARO159087 DARO_1296DARO_1295DARO_1298DARO_1293
CVIO243365 CV_1614CV_2479CV_1376CV_2813
CSP78 CAUL_5007CAUL_1651CAUL_4304
CSAL290398 CSAL_2435CSAL_2436CSAL_1327CSAL_2959
CPSY167879 CPS_2758CPS_2759CPS_2757CPS_2762
CPHY357809 CPHY_2757CPHY_0502CPHY_0254
CJEI306537 JK1126JK1039JK2093
CJAP155077 CJA_2555CJA_2556CJA_2554CJA_2561
CHYD246194 CHY_1159CHY_2201CHY_0906
CGLU196627 CG2158CG1839CG3422
CEFF196164 CE1861CE1749CE2933
CDIP257309 DIP1461DIP1351DIP2373
CBUR434922 COXBU7E912_1281COXBU7E912_1282COXBU7E912_1280COXBU7E912_1283
CBUR360115 COXBURSA331_A1342COXBURSA331_A1343COXBURSA331_A1341COXBURSA331_A1344
CBUR227377 CBU_1190CBU_1191CBU_1189CBU_1193
CBLO291272 BPEN_396BPEN_397BPEN_398
CBLO203907 BFL385BFL386BFL387
CAULO CC3704CC1283CC2871
BVIE269482 BCEP1808_0892BCEP1808_2410BCEP1808_0893BCEP1808_0890
BTRI382640 BT_2504BT_1491BT_0748
BTHA271848 BTH_I1562BTH_I1561BTH_I1563BTH_I1560
BSUI470137 BSUIS_A1735BSUIS_A1254BSUIS_A1555
BSUI204722 BR_1895BR_1206BR_1499
BSP376 BRADO0224BRADO4634BRADO1321
BSP36773 BCEP18194_A4079BCEP18194_A4078BCEP18194_A4080BCEP18194_A4077
BQUI283165 BQ12430BQ07960BQ09280
BPSE320373 BURPS668_2989BURPS668_1185BURPS668_2988BURPS668_2991
BPSE320372 BURPS1710B_A3332BURPS1710B_A1415BURPS1710B_A3331BURPS1710B_A3335
BPSE272560 BPSL2603BPSL1109BPSL2602BPSL2605
BPET94624 BPET1575BPET1574BPET1586BPET1573
BPER257313 BP2472BP2473BP2471BP2474
BPAR257311 BPP3461BPP3462BPP3460BPP3463
BOVI236 GBOORF1892GBOORF1217GBOORF1513
BMEL359391 BAB1_1895BAB1_1228BAB1_1518
BMEL224914 BMEI0168BMEI0784BMEI0512
BMAL320389 BMA10247_1989BMA10247_1990BMA10247_1988BMA10247_1991
BMAL320388 BMASAVP1_A0791BMASAVP1_A1032BMASAVP1_A0792BMASAVP1_A0789
BMAL243160 BMA_2121BMA_2122BMA_2120BMA_2123
BJAP224911 BLR0616BLL5367BLR7381
BHEN283166 BH15510BH10240BH11660
BCIC186490 BCI_0319BCI_0320BCI_0321
BCEN331272 BCEN2424_2321BCEN2424_0977BCEN2424_0974
BCEN331271 BCEN_1709BCEN_0498BCEN_0495
BCAN483179 BCAN_A1938BCAN_A1228BCAN_A1536
BBRO257310 BB3910BB3911BB3909BB3912
BBAC360095 BARBAKC583_0093BARBAKC583_0726BARBAKC583_0981
BAMB398577 BAMMC406_0848BAMMC406_2240BAMMC406_0849BAMMC406_0846
BAMB339670 BAMB_0836BAMB_2360BAMB_0837BAMB_0834
BABO262698 BRUAB1_1872BRUAB1_1211BRUAB1_1492
ASP76114 EBA7039EBA7041EBA7036EBA7042
ASP62977 ACIAD2937ACIAD0891ACIAD3596ACIAD0890
ASP62928 AZO1366AZO1365AZO1367AZO1363
ASP232721 AJS_3381AJS_3382AJS_3365AJS_3383
ASAL382245 ASA_2437ASA_2438ASA_2436ASA_2440
APLE434271 APJL_0503APJL_0613APJL_0464APJL_0084
APLE416269 APL_0474APL_0618APL_0438APL_0084
AHYD196024 AHA_1866AHA_1865AHA_1867AHA_1863
AFER243159 AFE_2655AFE_2653AFE_2657
AEHR187272 MLG_1711MLG_1712MLG_1710MLG_0248
ACRY349163 ACRY_0378ACRY_0163ACRY_2441
ACAU438753 AZC_0096AZC_2527AZC_1148
ABOR393595 ABO_1291ABO_1290ABO_1292ABO_1289
ABAU360910 BAV2694BAV2695BAV2692BAV2696
ABAC204669 ACID345_1574ACID345_1757ACID345_2614ACID345_1337
AAVE397945 AAVE_3425AAVE_3426AAVE_1873AAVE_3427


Organism features enriched in list (features available for 262 out of the 280 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 3.460e-72092
Disease:Bubonic_plague 0.007979366
Disease:Dysentery 0.007979366
Endospores:No 1.732e-961211
Endospores:Yes 2.437e-7753
GC_Content_Range4:0-40 3.379e-3329213
GC_Content_Range4:40-60 0.0000239124224
GC_Content_Range4:60-100 1.353e-17109145
GC_Content_Range7:0-30 1.249e-10247
GC_Content_Range7:30-40 7.405e-2027166
GC_Content_Range7:50-60 2.988e-1077107
GC_Content_Range7:60-70 5.146e-21107134
Genome_Size_Range5:0-2 1.098e-2517155
Genome_Size_Range5:2-4 0.001657073197
Genome_Size_Range5:4-6 4.675e-22136184
Genome_Size_Range5:6-10 3.486e-63647
Genome_Size_Range9:0-1 0.0000165227
Genome_Size_Range9:1-2 1.638e-1915128
Genome_Size_Range9:2-3 0.000352838120
Genome_Size_Range9:4-5 9.832e-107096
Genome_Size_Range9:5-6 4.411e-106688
Genome_Size_Range9:6-8 1.670e-63138
Gram_Stain:Gram_Neg 3.064e-32218333
Gram_Stain:Gram_Pos 7.434e-1528150
Habitat:Multiple 0.000369598178
Habitat:Specialized 5.937e-6953
Motility:No 5.044e-645151
Motility:Yes 5.235e-6146267
Optimal_temp.:25-30 1.731e-71919
Optimal_temp.:35-37 0.00002581313
Oxygen_Req:Aerobic 8.164e-6107185
Oxygen_Req:Anaerobic 1.258e-1215102
Oxygen_Req:Facultative 0.0009990107201
Pathogenic_in:Animal 0.00968433866
Shape:Coccobacillus 0.00013421111
Shape:Coccus 3.654e-101282
Shape:Rod 1.012e-24215347
Shape:Sphere 0.0011812219
Shape:Spiral 0.0000204434
Temp._range:Hyperthermophilic 0.0001462223
Temp._range:Mesophilic 0.0013720226473
Temp._range:Psychrophilic 0.007874689
Temp._range:Thermophilic 0.0000673535



Back to top


ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 215
Effective number of orgs (counting one per cluster within 468 clusters): 162

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WSUC273121 ncbi Wolinella succinogenes DSM 17400
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TSP28240 Thermotoga sp.0
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO1
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-11
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen1
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)1
SSP321327 ncbi Synechococcus sp. JA-3-3Ab1
SSP1148 ncbi Synechocystis sp. PCC 68030
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis1
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63011
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RALB246199 Ruminococcus albus 81
PTOR263820 ncbi Picrophilus torridus DSM 97900
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OIHE221109 ncbi Oceanobacillus iheyensis HTE8311
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSP103690 ncbi Nostoc sp. PCC 71201
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8431
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74211
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FSP106370 ncbi Frankia sp. CcI31
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293281
FALN326424 ncbi Frankia alni ACN14a1
EFAE226185 ncbi Enterococcus faecalis V5831
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough1
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DETH243164 ncbi Dehalococcoides ethenogenes 1951
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G201
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CTET212717 ncbi Clostridium tetani E881
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CPER195103 ncbi Clostridium perfringens ATCC 131241
CPER195102 ncbi Clostridium perfringens 131
CNOV386415 ncbi Clostridium novyi NT1
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFET360106 ncbi Campylobacter fetus fetus 82-401
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CDIF272563 ncbi Clostridium difficile 6301
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138260
CCAV227941 ncbi Chlamydophila caviae GPIC1
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto1
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6571
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CBOT498213 ncbi Clostridium botulinum B1 str. Okra1
CBOT441772 ncbi Clostridium botulinum F str. Langeland1
CBOT441771 ncbi Clostridium botulinum A str. Hall1
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193971
CBOT36826 Clostridium botulinum A1
CABO218497 ncbi Chlamydophila abortus S26/31
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1350
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)1
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)1
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs1
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ABUT367737 ncbi Arcobacter butzleri RM40181
AAUR290340 ncbi Arthrobacter aurescens TC11
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G6465   G6464   EG12690   EG11032   
WSUC273121
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TSP28240
TPET390874
TPEN368408
TPAL243276 TP_0999
TMAR243274
TLET416591 TLET_1083
TKOD69014
TERY203124
TELO197221 TLL1924
TDEN326298
TACI273075
SWOL335541 SWOL_0463
STOK273063
STHE322159 STER_1935
STHE299768 STR1957
STHE264199 STU1957
SSUI391296
SSUI391295
SSP387093 SUN_1351
SSP321332 CYB_2806
SSP321327 CYA_1362
SSP1148
SSOL273057
SSAP342451
SPYO370554
SPYO370553 MGAS2096_SPY1726
SPYO370552
SPYO370551 MGAS9429_SPY1704
SPYO319701
SPYO293653 M5005_SPY1699
SPYO286636 M6_SPY1705
SPYO198466
SPYO193567
SPYO186103
SPYO160490 SPY1992
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SHAE279808
SGOR29390 SGO_1828
SEPI176280
SEPI176279
SELO269084 SYC0901_C
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SAGA211110
SAGA208435
SAGA205921
SACI330779
RALB246199 GRAORF_2024
PTOR263820
PMOB403833
PMAR74547 PMT1618
PMAR167542 P9515ORF_1374
PISL384616
PHOR70601
PFUR186497
PAST100379
PARS340102
PAER178306
PABY272844
OIHE221109 OB2017
NSP387092 NIS_0826
NSP103690 ALR2204
NPHA348780 NP2680A
MTHE349307
MTHE187420
MSYN262723
MSTA339860
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBAR269797
MART243272
MAER449447 MAE_52800
MAEO419665
MACE188937
LSPH444177
LSAK314315 LSA0839
LREU557436 LREU_0488
LPLA220668 LP_1543
LLAC272623 L99272
LLAC272622 LACR_0082
LJOH257314
LINT267671 LIC_11470
LINT189518 LA2494
LGAS324831
LDEL390333
LDEL321956
LBRE387344 LVIS_2111
LBOR355277 LBJ_1491
LBOR355276 LBL_1715
IHOS453591
HWAL362976 HQ1652A
HSP64091 VNG1259G
HSAL478009 OE2805R
HPYL85963
HPYL357544
HPY
HMUK485914 HMUK_2414
HMAR272569 RRNAC1129
HHEP235279
HBUT415426
HACI382638
GVIO251221 GLR2109
FSUC59374 FSU1748
FSP106370 FRANCCI3_4536
FNUC190304 FN0297
FNOD381764
FMAG334413 FMG_0621
FALN326424 FRAAL6872
EFAE226185 EF_1979
DVUL882 DVU_1667
DSP255470 CBDBA1249
DSP216389 DEHABAV1_1119
DETH243164 DET_1309
DDES207559 DDE_1955
CTRA471473 CTLON_0350
CTRA471472 CTL0354
CTET212717 CTC_01286
CSUL444179
CPNE182082 CPB0322
CPNE138677 CPJ0314
CPNE115713 CPN0314
CPNE115711 CP_0444
CPER195103 CPF_1930
CPER195102 CPE1676
CNOV386415 NT01CX_2285
CMUR243161 TC_0375
CMET456442
CMAQ397948
CKOR374847
CJEJ407148 C8J_0823
CJEJ360109
CJEJ354242 CJJ81176_0893
CJEJ195099
CJEJ192222 CJ0886C
CHOM360107
CFET360106 CFF8240_0684
CFEL264202 CF0539
CDIF272563 CD1324
CCUR360105 CCV52592_1296
CCON360104
CCAV227941 CCA_00468
CBOT536232 CLM_2700
CBOT515621 CLJ_B2632
CBOT508765 CLL_A1284
CBOT498213 CLD_2233
CBOT441772 CLI_2463
CBOT441771 CLC_2254
CBOT441770 CLB_2271
CBOT36826 CBO2408
CABO218497 CAB454
BXEN266265
BTUR314724
BSP107806 BU314
BHER314723
BGAR290434
BBUR224326
BAPH372461 BCC_194
BAPH198804 BUSG304
BAFZ390236
AYEL322098
AURANTIMONAS
APER272557
AORE350688 CLOS_1539
ALAI441768
AFUL224325
ABUT367737 ABU_1159
AAUR290340 AAUR_PTC20059
AAEO224324


Organism features enriched in list (features available for 205 out of the 215 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.009624579
Arrangment:Chains 9.119e-85592
Arrangment:Clusters 6.633e-61517
Disease:Botulism 0.005206655
Disease:Pharyngitis 0.000213688
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 8.504e-61111
Disease:Wide_range_of_infections 8.504e-61111
Disease:bronchitis_and_pneumonitis 0.000213688
Endospores:No 1.983e-21127211
GC_Content_Range4:0-40 7.644e-21127213
GC_Content_Range4:40-60 0.001331063224
GC_Content_Range4:60-100 1.555e-1514145
GC_Content_Range7:0-30 2.042e-103747
GC_Content_Range7:30-40 1.201e-990166
GC_Content_Range7:50-60 2.316e-716107
GC_Content_Range7:60-70 5.235e-1512134
Genome_Size_Range5:0-2 2.786e-24107155
Genome_Size_Range5:4-6 2.373e-2216184
Genome_Size_Range5:6-10 0.0000120447
Genome_Size_Range9:0-1 5.668e-82327
Genome_Size_Range9:1-2 9.820e-1684128
Genome_Size_Range9:2-3 0.000154559120
Genome_Size_Range9:4-5 4.580e-81296
Genome_Size_Range9:5-6 2.516e-13488
Genome_Size_Range9:6-8 0.0000633338
Gram_Stain:Gram_Neg 9.918e-1967333
Gram_Stain:Gram_Pos 0.000030073150
Habitat:Host-associated 0.001393288206
Habitat:Multiple 0.000946247178
Habitat:Specialized 0.00005363253
Habitat:Terrestrial 0.0033742431
Motility:No 5.862e-778151
Motility:Yes 0.003735080267
Optimal_temp.:- 0.000062069257
Optimal_temp.:30-35 0.008261767
Optimal_temp.:30-37 0.00019471418
Optimal_temp.:37 0.000434852106
Oxygen_Req:Aerobic 4.533e-1033185
Oxygen_Req:Anaerobic 2.565e-1064102
Oxygen_Req:Microaerophilic 0.00444571218
Pathogenic_in:Human 0.004515188213
Pathogenic_in:Swine 0.005206655
Shape:Coccus 3.035e-146082
Shape:Irregular_coccus 1.229e-81717
Shape:Rod 1.116e-2563347
Shape:Sphere 0.00001061619
Shape:Spiral 6.051e-82734
Temp._range:Hyperthermophilic 1.674e-82123
Temp._range:Mesophilic 0.0067011156473



Back to top


ORGANISMS ENRICHED FOR GROUP:




Back to top


ORGANISMS DEPLETED FOR GROUP:




Back to top


PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GLYCOCAT-PWY (glycogen degradation I)2462210.7290
PWY-4041 (γ-glutamyl cycle)2792320.6918
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2912360.6805
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2962380.6783
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3002380.6663
GLUTATHIONESYN-PWY (glutathione biosynthesis)3392530.6520
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2902310.6512
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181920.6361
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951790.6357
PWY-5918 (heme biosynthesis I)2722180.6230
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3292430.6149
PWY-1269 (CMP-KDO biosynthesis I)3252410.6132
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2862230.6117
TYRFUMCAT-PWY (tyrosine degradation I)1841680.6034
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251900.5971
PWY-5148 (acyl-CoA hydrolysis)2271900.5899
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491440.5827
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831640.5792
P344-PWY (acrylonitrile degradation)2101770.5640
NAGLIPASYN-PWY (lipid IVA biosynthesis)3482430.5627
PWY-5913 (TCA cycle variation IV)3012220.5600
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911650.5540
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222690.5476
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3982600.5450
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551960.5341
PWY-5028 (histidine degradation II)1301250.5286
PWY-5669 (phosphatidylethanolamine biosynthesis I)4162640.5277
PLPSAL-PWY (pyridoxal 5'-phosphate salvage pathway)3742480.5264
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911580.5050
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3002130.5048
PWY-5084 (2-ketoglutarate dehydrogenase complex)3262230.4941
AST-PWY (arginine degradation II (AST pathway))1201140.4915
DAPLYSINESYN-PWY (lysine biosynthesis I)3422290.4883
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491860.4881
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491860.4881
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761470.4866
PWY-5938 ((R)-acetoin biosynthesis I)3762420.4816
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))1381240.4816
CHOLINE-BETAINE-ANA-PWY (choline degradation I)1351220.4803
PWY0-501 (lipoate biosynthesis and incorporation I)3852450.4779
PWY-5340 (sulfate activation for sulfonation)3852450.4779
VALDEG-PWY (valine degradation I)2902040.4765
PWY-46 (putrescine biosynthesis III)1381230.4738
SO4ASSIM-PWY (sulfate reduction I (assimilatory))3112130.4726
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3652360.4714
GLUCONSUPER-PWY (D-gluconate degradation)2291730.4690
PWY-6389 ((S)-acetoin biosynthesis)3682360.4634
PWY-6087 (4-chlorocatechol degradation)2231690.4629
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)1121050.4593
REDCITCYC (TCA cycle variation II)1741420.4589
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96940.4545
PWY-5386 (methylglyoxal degradation I)3052060.4449
PWY-6193 (3-chlorocatechol degradation II (ortho))1941510.4446
PROSYN-PWY (proline biosynthesis I)4752720.4437
PHENYLALANINE-DEG1-PWY (phenylalanine degradation I (aerobic))2891980.4407
CATECHOL-ORTHO-CLEAVAGE-PWY (catechol degradation to β-ketoadipate)103970.4405
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561290.4386
KDOSYN-PWY (KDO transfer to lipid IVA I)1801410.4279
PWY0-1337 (oleate β-oxidation)1991510.4261
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)1791400.4246
P601-PWY (D-camphor degradation)95900.4246
PWY-3162 (tryptophan degradation V (side chain pathway))94890.4215
PWY0-862 (cis-dodecenoyl biosynthesis)3432190.4206
BRANCHED-CHAIN-AA-SYN-PWY (superpathway of leucine, valine, and isoleucine biosynthesis)4582630.4180
GALACTCAT-PWY (D-galactonate degradation)104950.4176
PWY0-981 (taurine degradation IV)106960.4153
LIPASYN-PWY (phospholipases)2121560.4135
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)2121560.4135
GLUT-REDOX-PWY (glutathione redox reactions II)2461730.4122
GLYOXYLATE-BYPASS (glyoxylate cycle)1691320.4068



Back to top


PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6464   EG12690   EG11032   
G64650.9998210.9998250.999607
G64640.9996460.999536
EG126900.99932
EG11032



Back to top


PAIRWISE BLAST SCORES:

  G6465   G6464   EG12690   EG11032   
G64650.0f0---
G6464-0.0f0--
EG12690--0.0f0-
EG11032---0.0f0



Back to top


PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



Back to top


GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11032 EG12690 G6464 G6465 (centered at G6465)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6465   G6464   EG12690   EG11032   
188/623370/623402/623399/623
AAUR290340:0:Tyes---0
AAVE397945:0:Tyes1525152601527
ABAC204669:0:Tyes23741912860
ABAU360910:0:Tyes2304
ABOR393595:0:Tyes2130
ABUT367737:0:Tyes-0--
ACAU438753:0:Tyes-024611066
ACEL351607:0:Tyes--0815
ACRY349163:8:Tyes-21602288
ADEH290397:0:Tyes--03255
AEHR187272:0:Tyes1454145514530
AFER243159:0:Tyes2-03
AHYD196024:0:Tyes3240
AMAR234826:0:Tyes-0-135
AMAR329726:9:Tyes--0831
AMET293826:0:Tyes-2140-
ANAE240017:0:Tyes--081
AORE350688:0:Tyes-0--
APHA212042:0:Tyes-287-0
APLE416269:0:Tyes3935353570
APLE434271:0:Tno4025013650
ASAL382245:5:Tyes1204
ASP1667:3:Tyes--20830
ASP232721:2:Tyes1415016
ASP62928:0:Tyes3240
ASP62977:0:Tyes1900125010
ASP76114:2:Tyes1204
AVAR240292:2:Tyes--0-
AVAR240292:3:Tyes---0
BABO262698:1:Tno-6530278
BAMB339670:3:Tno2157230
BAMB398577:3:Tno2142330
BAMY326423:0:Tyes-2280-
BANT260799:0:Tno-2910-
BANT261594:2:Tno-2910-
BANT568206:2:Tyes-3010-
BANT592021:2:Tno-2980-
BAPH198804:0:Tyes---0
BAPH372461:0:Tyes---0
BBAC264462:0:Tyes--4560
BBAC360095:0:Tyes-0594831
BBRO257310:0:Tyes1203
BCAN483179:1:Tno-6780292
BCEN331271:2:Tno-123630
BCEN331272:3:Tyes-134530
BCER226900:1:Tyes-2880-
BCER288681:0:Tno-2980-
BCER315749:1:Tyes-2310-
BCER405917:1:Tyes-3350-
BCER572264:1:Tno-2970-
BCIC186490:0:Tyes01-2
BCLA66692:0:Tyes-12020-
BFRA272559:1:Tyes--9420
BFRA295405:0:Tno--8540
BHAL272558:0:Tyes-11420-
BHEN283166:0:Tyes-4660130
BJAP224911:0:Fyes-047836808
BLIC279010:0:Tyes-2480-
BLON206672:0:Tyes--0597
BMAL243160:1:Tno1203
BMAL320388:1:Tno223430
BMAL320389:1:Tyes1203
BMEL224914:1:Tno-0640362
BMEL359391:1:Tno-6230270
BOVI236:1:Tyes-5770243
BPAR257311:0:Tno1203
BPER257313:0:Tyes1203
BPET94624:0:Tyes21130
BPSE272560:1:Tyes1508015071510
BPSE320372:1:Tno1799017981802
BPSE320373:1:Tno1725017241727
BPUM315750:0:Tyes-2260-
BQUI283165:0:Tyes-3750116
BSP107806:2:Tyes---0
BSP36773:2:Tyes2130
BSP376:0:Tyes-041811025
BSUB:0:Tyes-2390-
BSUI204722:1:Tyes-6590284
BSUI470137:1:Tno-4640288
BTHA271848:1:Tno2130
BTHE226186:0:Tyes--03191
BTHU281309:1:Tno-2870-
BTHU412694:1:Tno-2710-
BTRI382640:1:Tyes-13006700
BVIE269482:7:Tyes2150830
BWEI315730:4:Tyes-2730-
CABO218497:0:Tyes---0
CACE272562:1:Tyes-14780-
CAULO:0:Tyes-246001616
CBEI290402:0:Tyes-1170-
CBLO203907:0:Tyes01-2
CBLO291272:0:Tno01-2
CBOT36826:1:Tno-0--
CBOT441770:0:Tyes-0--
CBOT441771:0:Tno-0--
CBOT441772:1:Tno-0--
CBOT498213:1:Tno-0--
CBOT508765:1:Tyes-0--
CBOT515621:2:Tyes-0--
CBOT536232:0:Tno-0--
CBUR227377:1:Tyes1204
CBUR360115:1:Tno1203
CBUR434922:2:Tno1203
CCAV227941:1:Tyes---0
CCHL340177:0:Tyes--0523
CCUR360105:0:Tyes-0--
CDES477974:0:Tyes-01216-
CDIF272563:1:Tyes-0--
CDIP257309:0:Tyes-11301004
CEFF196164:0:Fyes-11901219
CFEL264202:1:Tyes---0
CFET360106:0:Tyes-0--
CGLU196627:0:Tyes-29901448
CHUT269798:0:Tyes--6160
CHYD246194:0:Tyes-24912610
CJAP155077:0:Tyes1207
CJEI306537:0:Tyes-9401098
CJEJ192222:0:Tyes-0--
CJEJ354242:2:Tyes-0--
CJEJ407148:0:Tno-0--
CKLU431943:1:Tyes-1330-
CMIC31964:2:Tyes--02261
CMIC443906:2:Tyes--01186
CMUR243161:1:Tyes---0
CNOV386415:0:Tyes--0-
CPEL335992:0:Tyes-248-0
CPER195102:1:Tyes-0--
CPER195103:0:Tno-0--
CPER289380:3:Tyes-0109-
CPHY357809:0:Tyes-24812480
CPNE115711:1:Tyes---0
CPNE115713:0:Tno---0
CPNE138677:0:Tno---0
CPNE182082:0:Tno---0
CPRO264201:0:Fyes--014
CPSY167879:0:Tyes1205
CRUT413404:0:Tyes-0-1
CSAL290398:0:Tyes1134113501658
CSP501479:8:Fyes--018
CSP78:2:Tyes-338802682
CTEP194439:0:Tyes--085
CTET212717:0:Tyes-0--
CTRA471472:0:Tyes---0
CTRA471473:0:Tno---0
CVES412965:0:Tyes-0-1
CVIO243365:0:Tyes243111701454
DARO159087:0:Tyes3250
DDES207559:0:Tyes-0--
DETH243164:0:Tyes--0-
DGEO319795:0:Tyes---0
DGEO319795:1:Tyes--0-
DHAF138119:0:Tyes-0460-
DNOD246195:0:Tyes102592
DOLE96561:0:Tyes-4600-
DPSY177439:2:Tyes-730-
DRAD243230:3:Tyes--082
DRED349161:0:Tyes-4990-
DSHI398580:5:Tyes-02562634
DSP216389:0:Tyes--0-
DSP255470:0:Tno--0-
DVUL882:1:Tyes-0--
ECAN269484:0:Tyes-0-118
ECAR218491:0:Tyes1204
ECHA205920:0:Tyes-148-0
ECOL199310:0:Tno3240
ECOL316407:0:Tno3240
ECOL331111:6:Tno4350
ECOL362663:0:Tno3240
ECOL364106:1:Tno3240
ECOL405955:2:Tyes3240
ECOL409438:6:Tyes3240
ECOL413997:0:Tno3240
ECOL439855:4:Tno1205
ECOL469008:0:Tno1204
ECOL481805:0:Tno1204
ECOL585034:0:Tno3240
ECOL585035:0:Tno3240
ECOL585055:0:Tno3240
ECOL585056:2:Tno3240
ECOL585057:0:Tno1406
ECOL585397:0:Tno3240
ECOL83334:0:Tno3240
ECOLI:0:Tno3240
ECOO157:0:Tno3240
EFAE226185:3:Tyes--0-
EFER585054:1:Tyes3240
ELIT314225:0:Tyes-20120563
ERUM254945:0:Tyes-0-147
ERUM302409:0:Tno-0-148
ESP42895:1:Tyes3240
FALN326424:0:Tyes---0
FJOH376686:0:Tyes--2130
FMAG334413:1:Tyes--0-
FNUC190304:0:Tyes--0-
FPHI484022:1:Tyes28328210520
FRANT:0:Tno10641063-0
FSP106370:0:Tyes---0
FSP1855:0:Tyes--05555
FSUC59374:0:Tyes--0-
FTUL351581:0:Tno121120-0
FTUL393011:0:Tno10099-0
FTUL393115:0:Tyes10451044-0
FTUL401614:0:Tyes011111285
FTUL418136:0:Tno01-1079
FTUL458234:0:Tno104103-0
GBET391165:0:Tyes-15470139
GFOR411154:0:Tyes--18670
GKAU235909:1:Tyes-2490-
GMET269799:1:Tyes-05792711
GOXY290633:5:Tyes-66715190
GSUL243231:0:Tyes-261115700
GTHE420246:1:Tyes-01336-
GURA351605:0:Tyes-267302310
GVIO251221:0:Tyes--0-
HARS204773:0:Tyes2130
HAUR316274:2:Tyes--0702
HCHE349521:0:Tyes8685870
HDUC233412:0:Tyes7859938310
HHAL349124:0:Tyes130905
HINF281310:0:Tyes1191181200
HINF374930:0:Tyes120117
HINF71421:0:Tno4264274250
HMAR272569:8:Tyes---0
HMOD498761:0:Tyes-134114420
HMUK485914:1:Tyes---0
HNEP81032:0:Tyes-294320600
HSAL478009:4:Tyes---0
HSOM205914:1:Tyes13750337
HSOM228400:0:Tno9180917667
HSP64091:2:Tno---0
HWAL362976:1:Tyes---0
ILOI283942:0:Tyes1205
JSP290400:1:Tyes-01942942
JSP375286:0:Tyes2130
KPNE272620:2:Tyes4350
KRAD266940:2:Fyes--14990
LACI272621:0:Tyes-0117-
LBIF355278:2:Tyes--01038
LBIF456481:2:Tno--01065
LBOR355276:1:Tyes---0
LBOR355277:1:Tno---0
LBRE387344:2:Tyes--0-
LCAS321967:1:Tyes--0759
LCHO395495:0:Tyes3240
LHEL405566:0:Tyes-0453767
LINN272626:1:Tno-980-
LINT189518:1:Tyes---0
LINT267671:1:Tno---0
LINT363253:3:Tyes01--
LLAC272622:5:Tyes--0-
LLAC272623:0:Tyes--0-
LMES203120:1:Tyes-01153-
LMON169963:0:Tno-920-
LMON265669:0:Tyes-950-
LPLA220668:0:Tyes--0-
LPNE272624:0:Tno1203
LPNE297245:1:Fno1203
LPNE297246:1:Fyes1203
LPNE400673:0:Tno1203
LREU557436:0:Tyes--0-
LSAK314315:0:Tyes--0-
LWEL386043:0:Tyes-950-
LXYL281090:0:Tyes--01207
MABS561007:1:Tyes-22402089
MAER449447:0:Tyes---0
MAQU351348:2:Tyes120205
MAVI243243:0:Tyes-20001842
MBOV233413:0:Tno-18401369
MBOV410289:0:Tno-276625800
MCAP243233:0:Tyes841830
MEXT419610:0:Tyes-37650828
MFLA265072:0:Tyes6590
MGIL350054:3:Tyes-318429530
MLEP272631:0:Tyes-29501332
MLOT266835:2:Tyes-304601737
MMAG342108:0:Tyes-03466647
MMAR394221:0:Tyes-11660378
MPET420662:1:Tyes3240
MSME246196:0:Tyes-03284196
MSP164756:1:Tno-02083314
MSP164757:0:Tno-02593691
MSP189918:2:Tyes-02093355
MSP266779:3:Tyes-15860469
MSP400668:0:Tyes3637350
MSP409:2:Tyes-108324980
MSUC221988:0:Tyes5115135100
MTBCDC:0:Tno-19501464
MTBRV:0:Tno-19301367
MTHE264732:0:Tyes-05721316
MTUB336982:0:Tno-18101366
MTUB419947:0:Tyes-19601398
MVAN350058:0:Tyes-02403656
MXAN246197:0:Tyes-01329475
NARO279238:0:Tyes-021391934
NEUR228410:0:Tyes102892
NEUT335283:2:Tyes1663166216640
NFAR247156:2:Tyes-22302041
NGON242231:0:Tyes0597462353
NHAM323097:2:Tyes-014222704
NMEN122586:0:Tno0665612675
NMEN122587:0:Tyes0636554646
NMEN272831:0:Tno0602529612
NMEN374833:0:Tno0650568663
NMUL323848:3:Tyes1541521550
NOCE323261:1:Tyes32-0
NPHA348780:2:Tyes---0
NSEN222891:0:Tyes-88-0
NSP103690:6:Tyes---0
NSP35761:1:Tyes--02289
NSP387092:0:Tyes-0--
NWIN323098:0:Tyes-013222399
OANT439375:5:Tyes-01057730
OCAR504832:0:Tyes-01356772
OIHE221109:0:Tyes--0-
OTSU357244:0:Fyes-457-0
PACN267747:0:Tyes--01124
PAER208963:0:Tyes2130
PAER208964:0:Tno1203
PARC259536:0:Tyes14853020301
PATL342610:0:Tyes9596940
PCAR338963:0:Tyes-016952315
PCRY335284:1:Tyes16433260325
PDIS435591:0:Tyes--1030
PENT384676:0:Tyes1222122112230
PFLU205922:0:Tyes2722272327210
PFLU216595:1:Tyes1201312
PFLU220664:0:Tyes2898289928970
PGIN242619:0:Tyes--028
PHAL326442:1:Tyes1206
PING357804:0:Tyes102495
PINT246198:0:Tyes---0
PINT246198:1:Tyes--0-
PLUM243265:0:Fyes3240
PLUT319225:0:Tyes--0515
PMAR146891:0:Tyes--01233
PMAR167539:0:Tyes--01178
PMAR167540:0:Tyes--01095
PMAR167542:0:Tyes---0
PMAR167546:0:Tyes--01251
PMAR167555:0:Tyes--01474
PMAR59920:0:Tno--6990
PMAR74546:0:Tyes--01187
PMAR74547:0:Tyes--0-
PMAR93060:0:Tyes--01284
PMEN399739:0:Tyes1203
PMUL272843:1:Tyes102318
PNAP365044:8:Tyes1204
PPEN278197:0:Tyes-0593-
PPRO298386:2:Tyes4350
PPUT160488:0:Tno3211321232100
PPUT351746:0:Tyes1030102910310
PPUT76869:0:Tno2810281128090
PRUM264731:0:Tyes--0500
PSP117:0:Tyes--5060
PSP296591:2:Tyes1204
PSP312153:0:Tyes-1610
PSP56811:2:Tyes6453690368
PSTU379731:0:Tyes1203
PSYR205918:0:Tyes2166216721650
PSYR223283:2:Tyes2142214321410
PTHE370438:0:Tyes-2410-
RAKA293614:0:Fyes-570-0
RALB246199:0:Tyes--0-
RBEL336407:0:Tyes-0-297
RBEL391896:0:Fno-312-0
RCAN293613:0:Fyes-426-0
RCAS383372:0:Tyes--3730
RCON272944:0:Tno-678-0
RDEN375451:4:Tyes-013153252
RETL347834:5:Tyes-223801252
REUT264198:3:Tyes4506
REUT381666:2:Tyes2813100
RFEL315456:2:Tyes-643-0
RFER338969:1:Tyes1203
RLEG216596:6:Tyes-274601609
RMAS416276:1:Tyes-464-0
RMET266264:2:Tyes2909100
RPAL258594:0:Tyes-029563820
RPAL316055:0:Tyes-031293533
RPAL316056:0:Tyes-031413568
RPAL316057:0:Tyes-027391020
RPAL316058:0:Tyes-019641147
RPOM246200:1:Tyes-28370379
RPRO272947:0:Tyes-367-0
RRIC392021:0:Fno-636-0
RRIC452659:0:Tyes-642-0
RRUB269796:1:Tyes-10420238
RSAL288705:0:Tyes--01564
RSOL267608:0:Tyes-0--
RSOL267608:1:Tyes2-04
RSP101510:3:Fyes-309434760
RSP357808:0:Tyes--36730
RSPH272943:4:Tyes-025884
RSPH349101:2:Tno-024583
RSPH349102:5:Tyes-262022280
RTYP257363:0:Tno-377-0
RXYL266117:0:Tyes--8130
SACI56780:0:Tyes-01618-
SALA317655:1:Tyes-254620330
SARE391037:0:Tyes--03172
SAVE227882:1:Fyes--25840
SBAL399599:3:Tyes1205
SBAL402882:1:Tno1205
SBOY300268:1:Tyes3240
SCO:2:Fyes--02416
SDEG203122:0:Tyes2130
SDEN318161:0:Tyes3130320
SDYS300267:1:Tyes1204
SELO269084:0:Tyes---0
SENT209261:0:Tno1204
SENT220341:0:Tno3240
SENT295319:0:Tno1204
SENT321314:2:Tno3240
SENT454169:2:Tno3240
SERY405948:0:Tyes-372605212
SFLE198214:0:Tyes3240
SFLE373384:0:Tno3240
SFUM335543:0:Tyes-7330-
SGLO343509:3:Tyes3240
SGOR29390:0:Tyes--0-
SHAL458817:0:Tyes1941951930
SHIGELLA:0:Tno3240
SLAC55218:1:Fyes-0143538
SLOI323850:0:Tyes1206
SMED366394:3:Tyes-20100230
SMEL266834:2:Tyes-18400184
SONE211586:1:Tyes4350
SPEA398579:0:Tno12028
SPRO399741:1:Tyes3240
SPYO160490:0:Tno--0-
SPYO286636:0:Tno--0-
SPYO293653:0:Tno--0-
SPYO370551:0:Tno--0-
SPYO370553:0:Tno--0-
SRUB309807:1:Tyes--01639
SSED425104:0:Tyes4350
SSON300269:1:Tyes3240
SSP1131:0:Tyes--3190
SSP292414:2:Tyes-0233562
SSP321327:0:Tyes---0
SSP321332:0:Tyes---0
SSP387093:0:Tyes-0--
SSP644076:5:Fyes---0
SSP644076:6:Fyes-0--
SSP644076:7:Fyes--0-
SSP64471:0:Tyes--15730
SSP84588:0:Tyes--15030
SSP94122:1:Tyes4350
STHE264199:0:Tyes--0-
STHE292459:0:Tyes-50113550
STHE299768:0:Tno--0-
STHE322159:2:Tyes--0-
STRO369723:0:Tyes--02752
STYP99287:1:Tyes3240
SWOL335541:0:Tyes--0-
TCRU317025:0:Tyes2130
TDEN243275:0:Tyes--0721
TDEN292415:0:Tyes50014990
TELO197221:0:Tyes---0
TFUS269800:0:Tyes--01060
TLET416591:0:Tyes--0-
TPAL243276:0:Tyes-0--
TPSE340099:0:Tyes-7372590
TROS309801:1:Tyes-0220-
TSP1755:0:Tyes-6923520
TTEN273068:0:Tyes-0393788
TTHE262724:1:Tyes--033
TTHE300852:2:Tyes--037
TTUR377629:0:Tyes2130
VCHO:0:Tyes0792175
VCHO345073:1:Tno08601177
VEIS391735:1:Tyes2130
VFIS312309:2:Tyes4350
VPAR223926:1:Tyes102146
VVUL196600:2:Tyes102133
VVUL216895:1:Tno1321331300
WPIP80849:0:Tyes-196-0
WPIP955:0:Tyes-0-571
XAUT78245:1:Tyes-02944917
XAXO190486:0:Tyes3150
XCAM190485:0:Tyes3150
XCAM314565:0:Tno2405
XCAM316273:0:Tno4250
XCAM487884:0:Tno3150
XFAS160492:2:Tno4250
XFAS183190:1:Tyes3140
XFAS405440:0:Tno4250
XORY291331:0:Tno2405
XORY342109:0:Tyes2405
XORY360094:0:Tno610012
YENT393305:1:Tyes3240
YPES187410:5:Tno1205
YPES214092:3:Tno3240
YPES349746:2:Tno3240
YPES360102:3:Tyes3240
YPES377628:2:Tno1204
YPES386656:2:Tno1204
YPSE273123:2:Tno3240
YPSE349747:2:Tno1204
ZMOB264203:0:Tyes-162401047



Back to top