CANDIDATE ID: 339

CANDIDATE ID: 339

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9960017e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG10978 (sspB) (b3228)
   Products of gene:
     - EG10978-MONOMER (SspB)
     - CPLX0-2681 (ClpXP protease specificity-enhancing factor)

- EG10977 (sspA) (b3229)
   Products of gene:
     - EG10977-MONOMER (stringent starvation protein A)

- EG10908 (rpsI) (b3230)
   Products of gene:
     - EG10908-MONOMER (30S ribosomal subunit protein S9)
     - CPLX0-3953 (30S ribosomal subunit)
       Regulatees:
        TU00345 (rpsB-tsf)
     - CPLX0-3964 (ribosome)

- EG10874 (rplM) (b3231)
   Products of gene:
     - EG10874-MONOMER (50S ribosomal subunit protein L13)
     - CPLX0-3962 (50S ribosomal subunit)
     - CPLX0-3964 (ribosome)



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 215
Effective number of orgs (counting one per cluster within 468 clusters): 140

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A4
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110184
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103314
XFAS405440 ncbi Xylella fastidiosa M124
XFAS183190 ncbi Xylella fastidiosa Temecula14
XFAS160492 ncbi Xylella fastidiosa 9a5c4
XCAM487884 Xanthomonas campestris pv. paulliniae4
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-104
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80044
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339134
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3064
XAUT78245 ncbi Xanthobacter autotrophicus Py23
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VEIS391735 ncbi Verminephrobacter eiseniae EF01-24
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TTUR377629 ncbi Teredinibacter turnerae T79014
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252594
TCRU317025 ncbi Thiomicrospira crunogena XCL-24
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
SSP94122 ncbi Shewanella sp. ANA-34
SSON300269 ncbi Shigella sonnei Ss0464
SSED425104 ncbi Shewanella sediminis HAW-EB34
SPRO399741 ncbi Serratia proteamaculans 5684
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-14
SMEL266834 ncbi Sinorhizobium meliloti 10213
SMED366394 ncbi Sinorhizobium medicae WSM4193
SLOI323850 ncbi Shewanella loihica PV-44
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SDEN318161 ncbi Shewanella denitrificans OS2174
SDEG203122 ncbi Saccharophagus degradans 2-404
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170253
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170293
RSOL267608 ncbi Ralstonia solanacearum GMI10004
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111703
RPAL316058 ncbi Rhodopseudomonas palustris HaA23
RPAL316056 ncbi Rhodopseudomonas palustris BisB183
RPAL316055 ncbi Rhodopseudomonas palustris BisA533
RPAL258594 ncbi Rhodopseudomonas palustris CGA0093
RMET266264 ncbi Ralstonia metallidurans CH344
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38413
RFER338969 ncbi Rhodoferax ferrireducens T1184
REUT381666 ncbi Ralstonia eutropha H164
REUT264198 ncbi Ralstonia eutropha JMP1344
RETL347834 ncbi Rhizobium etli CFN 423
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP56811 Psychrobacter sp.4
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-14
PSP296591 ncbi Polaromonas sp. JS6664
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS94
PNAP365044 ncbi Polaromonas naphthalenivorans CJ24
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PMEN399739 ncbi Pseudomonas mendocina ymp4
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 374
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PCRY335284 ncbi Psychrobacter cryohalolentis K54
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PARC259536 ncbi Psychrobacter arcticus 273-44
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
OCAR504832 ncbi Oligotropha carboxidovorans OM53
OANT439375 ncbi Ochrobactrum anthropi ATCC 491883
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2553
NOCE323261 ncbi Nitrosococcus oceani ATCC 197074
NMUL323848 ncbi Nitrosospira multiformis ATCC 251964
NMEN374833 ncbi Neisseria meningitidis 0534424
NMEN272831 ncbi Neisseria meningitidis FAM184
NMEN122587 ncbi Neisseria meningitidis Z24914
NMEN122586 ncbi Neisseria meningitidis MC584
NHAM323097 ncbi Nitrobacter hamburgensis X143
NGON242231 ncbi Neisseria gonorrhoeae FA 10904
NEUT335283 ncbi Nitrosomonas eutropha C914
NEUR228410 ncbi Nitrosomonas europaea ATCC 197184
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSP409 Methylobacterium sp.3
MSP400668 ncbi Marinomonas sp. MWYL14
MPET420662 ncbi Methylibium petroleiphilum PM14
MMAR394221 ncbi Maricaulis maris MCS103
MMAG342108 ncbi Magnetospirillum magneticum AMB-13
MLOT266835 ncbi Mesorhizobium loti MAFF3030993
MFLA265072 ncbi Methylobacillus flagellatus KT4
MCAP243233 ncbi Methylococcus capsulatus Bath4
MAQU351348 ncbi Marinobacter aquaeolei VT84
LPNE400673 ncbi Legionella pneumophila Corby4
LPNE297246 ncbi Legionella pneumophila Paris4
LPNE297245 ncbi Legionella pneumophila Lens4
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 14
LCHO395495 ncbi Leptothrix cholodnii SP-64
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP375286 ncbi Janthinobacterium sp. Marseille4
ILOI283942 ncbi Idiomarina loihiensis L2TR4
HSOM228400 ncbi Haemophilus somnus 23364
HSOM205914 ncbi Haemophilus somnus 129PT4
HNEP81032 Hyphomonas neptunium3
HINF71421 ncbi Haemophilus influenzae Rd KW204
HINF374930 ncbi Haemophilus influenzae PittEE4
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HHAL349124 ncbi Halorhodospira halophila SL14
HDUC233412 ncbi Haemophilus ducreyi 35000HP4
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HARS204773 ncbi Herminiimonas arsenicoxydans4
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-004
FTUL418136 ncbi Francisella tularensis tularensis WY96-34184
FTUL401614 ncbi Francisella novicida U1124
FTUL393115 ncbi Francisella tularensis tularensis FSC1984
FTUL393011 ncbi Francisella tularensis holarctica OSU184
FTUL351581 Francisella tularensis holarctica FSC2004
FRANT ncbi Francisella tularensis tularensis SCHU S44
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250174
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DNOD246195 ncbi Dichelobacter nodosus VCS1703A4
DARO159087 ncbi Dechloromonas aromatica RCB4
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA4
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)3
CPSY167879 ncbi Colwellia psychrerythraea 34H4
CJAP155077 Cellvibrio japonicus3
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1114
CBUR360115 ncbi Coxiella burnetii RSA 3314
CBUR227377 ncbi Coxiella burnetii RSA 4934
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTHA271848 ncbi Burkholderia thailandensis E2644
BSUI470137 ncbi Brucella suis ATCC 234453
BSUI204722 ncbi Brucella suis 13303
BSP36773 Burkholderia sp.4
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii4
BPER257313 ncbi Bordetella pertussis Tohama I4
BPAR257311 ncbi Bordetella parapertussis 128224
BMEL359391 ncbi Brucella melitensis biovar Abortus 23083
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M3
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1103
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BCAN483179 ncbi Brucella canis ATCC 233653
BBRO257310 ncbi Bordetella bronchiseptica RB504
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9413
ASP76114 ncbi Aromatoleum aromaticum EbN14
ASP62977 ncbi Acinetobacter sp. ADP14
ASP62928 ncbi Azoarcus sp. BH724
ASP232721 ncbi Acidovorax sp. JS424
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AHYD196024 Aeromonas hydrophila dhakensis4
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232704
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ABOR393595 ncbi Alcanivorax borkumensis SK24
ABAU360910 ncbi Bordetella avium 197N4
AAVE397945 ncbi Acidovorax citrulli AAC00-14


Names of the homologs of the genes in the group in each of these orgs
  EG10978   EG10977   EG10908   EG10874   
YPSE349747 YPSIP31758_0463YPSIP31758_0462YPSIP31758_0461YPSIP31758_0459
YPSE273123 YPTB3505YPTB3506YPTB3507YPTB3508
YPES386656 YPDSF_0337YPDSF_0336YPDSF_0335YPDSF_0334
YPES377628 YPN_3442YPN_3443YPN_3444YPN_3445
YPES360102 YPA_3743YPA_3742YPA_3741YPA_3740
YPES349746 YPANGOLA_A1131YPANGOLA_A1132YPANGOLA_A1133YPANGOLA_A1134
YPES214092 YPO3560YPO3561YPO3562YPO3563
YPES187410 Y0131Y0132Y0133Y0134
YENT393305 YE3738YE3739YE3740YE3741
XORY360094 XOOORF_1949XOOORF_1948XOOORF_0650XOOORF_0649
XORY342109 XOO2598XOO2599XOO3928XOO3929
XORY291331 XOO2758XOO2759XOO4152XOO4153
XFAS405440 XFASM12_1941XFASM12_1942XFASM12_0875XFASM12_0876
XFAS183190 PD_1773PD_1774PD_0751PD_0752
XFAS160492 XF0912XF0911XF1536XF1537
XCAM487884 XCC-B100_1852XCC-B100_1851XCC-B100_0507XCC-B100_0506
XCAM316273 XCAORF_2593XCAORF_2594XCAORF_4035XCAORF_4036
XCAM314565 XC_1796XC_1795XC_0491XC_0490
XCAM190485 XCC2320XCC2321XCC0477XCC0476
XAXO190486 XAC2453XAC2454XAC0488XAC0487
XAUT78245 XAUT_3331XAUT_4345XAUT_4344
VVUL216895 VV1_0593VV1_0594VV1_0598VV1_0599
VVUL196600 VV0600VV0599VV0595VV0594
VPAR223926 VP0445VP0444VP0439VP0438
VFIS312309 VF2215VF2216VF2221VF2222
VEIS391735 VEIS_3931VEIS_3932VEIS_2639VEIS_2638
VCHO345073 VC0395_A0109VC0395_A0108VC0395_A0104VC0395_A0103
VCHO VC0577VC0576VC0571VC0570
TTUR377629 TERTU_3675TERTU_3676TERTU_3679TERTU_3680
TDEN292415 TBD_1829TBD_1830TBD_0454TBD_0453
TCRU317025 TCR_1738TCR_1739TCR_0462TCR_0461
STYP99287 STM3341STM3342STM3344STM3345
SSP94122 SHEWANA3_0605SHEWANA3_0604SHEWANA3_0693SHEWANA3_0692
SSON300269 SSO_3369SSO_3370SSO_3371SSO_3372
SSED425104 SSED_0805SSED_0804SSED_0748SSED_0747
SPRO399741 SPRO_4346SPRO_4347SPRO_4348SPRO_4349
SPEA398579 SPEA_3532SPEA_3533SPEA_3594SPEA_3595
SONE211586 SO_0612SO_0611SO_3939SO_3940
SMEL266834 SMC00383SMC01803SMC01804
SMED366394 SMED_3505SMED_0861SMED_0862
SLOI323850 SHEW_0574SHEW_0573SHEW_3293SHEW_3294
SHIGELLA SSPBSSPARPSIRPLM
SHAL458817 SHAL_3626SHAL_3627SHAL_3682SHAL_3683
SGLO343509 SG0219SG0218SG0217SG0216
SFLE373384 SFV_3255SFV_3256SFV_3257SFV_3258
SFLE198214 AAN44732.1AAN44733.1AAN44734.1AAN44735.1
SENT454169 SEHA_C3639SEHA_C3640SEHA_C3642SEHA_C3643
SENT321314 SCH_3279SCH_3280SCH_3282SCH_3283
SENT295319 SPA3209SPA3210SPA3211SPA3212
SENT220341 STY3522STY3523STY3524STY3525
SENT209261 T3258T3259T3260T3261
SDYS300267 SDY_3404SDY_3405SDY_3406SDY_3407
SDEN318161 SDEN_3197SDEN_3198SDEN_0507SDEN_0506
SDEG203122 SDE_3159SDE_3160SDE_3163SDE_3164
SBOY300268 SBO_3161SBO_3160SBO_3159SBO_3158
SBAL402882 SHEW185_3759SHEW185_3760SHEW185_0703SHEW185_0702
SBAL399599 SBAL195_3885SBAL195_3886SBAL195_0733SBAL195_0732
RSPH349102 RSPH17025_2783RSPH17025_2175RSPH17025_2176
RSPH349101 RSPH17029_2805RSPH17029_1650RSPH17029_1651
RSOL267608 RSC2925RSC2926RSC0491RSC0490
RRUB269796 RRU_A3193RRU_A2151RRU_A2152
RPAL316058 RPB_0908RPB_2672RPB_2671
RPAL316056 RPC_3336RPC_2697RPC_2696
RPAL316055 RPE_3417RPE_2858RPE_2857
RPAL258594 RPA3159RPA2768RPA2767
RMET266264 RMET_3226RMET_3227RMET_0411RMET_0410
RLEG216596 RL2759RL1672RL1673
RFER338969 RFER_2968RFER_2967RFER_0722RFER_0721
REUT381666 H16_A3394H16_A3395H16_A0483H16_A0482
REUT264198 REUT_A3089REUT_A3090REUT_A0469REUT_A0468
RETL347834 RHE_CH02424RHE_CH01570RHE_CH01571
PSYR223283 PSPTO_4423PSPTO_4424PSPTO_4425PSPTO_4426
PSYR205918 PSYR_4117PSYR_4118PSYR_4119PSYR_4120
PSTU379731 PST_1067PST_1066PST_1062PST_1061
PSP56811 PSYCPRWF_0792PSYCPRWF_0793PSYCPRWF_0797PSYCPRWF_0798
PSP312153 PNUC_0129PNUC_0128PNUC_1885PNUC_1886
PSP296591 BPRO_0825BPRO_0824BPRO_4112BPRO_4113
PPUT76869 PPUTGB1_4528PPUTGB1_4529PPUTGB1_4533PPUTGB1_4534
PPUT351746 PPUT_4403PPUT_4404PPUT_4408PPUT_4409
PPUT160488 PP_1321PP_1320PP_1316PP_1315
PPRO298386 PBPRA3231PBPRA3232PBPRA3236PBPRA3237
PNAP365044 PNAP_0717PNAP_0716PNAP_0501PNAP_0500
PMUL272843 PM0523PM0522PM0521PM0520
PMEN399739 PMEN_0907PMEN_0906PMEN_0902PMEN_0901
PLUM243265 PLU4012PLU4013PLU4014PLU4015
PING357804 PING_2870PING_2871PING_2876PING_2877
PHAL326442 PSHAA2526PSHAA2527PSHAA2531PSHAA2532
PFLU220664 PFL_5076PFL_5077PFL_5081PFL_5082
PFLU216595 PFLU0845PFLU0844PFLU0840PFLU0839
PFLU205922 PFL_4688PFL_4689PFL_4693PFL_4694
PENT384676 PSEEN4501PSEEN4502PSEEN4506PSEEN4507
PCRY335284 PCRYO_1587PCRYO_1586PCRYO_1748PCRYO_1747
PATL342610 PATL_3697PATL_3698PATL_3702PATL_3703
PARC259536 PSYC_1424PSYC_1423PSYC_1566PSYC_1565
PAER208964 PA4427PA4428PA4432PA4433
PAER208963 PA14_57520PA14_57530PA14_57580PA14_57590
OCAR504832 OCAR_5755OCAR_5896OCAR_5895
OANT439375 OANT_2385OANT_2496OANT_2495
NWIN323098 NWI_1706NWI_1422NWI_1421
NOCE323261 NOC_0295NOC_0296NOC_2837NOC_2836
NMUL323848 NMUL_A1001NMUL_A1002NMUL_A0560NMUL_A0561
NMEN374833 NMCC_0263NMCC_0262NMCC_0130NMCC_0129
NMEN272831 NMC1924NMC1925NMC2037NMC2038
NMEN122587 NMA0499NMA0498NMA0379NMA0378
NMEN122586 NMB_1952NMB_1953NMB_2056NMB_2057
NHAM323097 NHAM_2428NHAM_2454NHAM_2455
NGON242231 NGO2131NGO2130NGO2025NGO2024
NEUT335283 NEUT_1114NEUT_1113NEUT_0763NEUT_0762
NEUR228410 NE0813NE0812NE1483NE1484
MSUC221988 MS1280MS1281MS1282MS1283
MSP409 M446_5058M446_4611M446_4612
MSP400668 MMWYL1_2397MMWYL1_2398MMWYL1_2399MMWYL1_2400
MPET420662 MPE_A0853MPE_A0852MPE_A3156MPE_A3157
MMAR394221 MMAR10_0117MMAR10_1513MMAR10_1514
MMAG342108 AMB3942AMB3556AMB3557
MLOT266835 MLL0063MLL8456MLL8458
MFLA265072 MFLA_0264MFLA_0263MFLA_0056MFLA_0055
MCAP243233 MCA_1958MCA_1959MCA_0905MCA_0904
MAQU351348 MAQU_2466MAQU_2467MAQU_2471MAQU_2472
LPNE400673 LPC_0434LPC_0433LPC_0429LPC_0428
LPNE297246 LPP2756LPP2757LPP2761LPP2762
LPNE297245 LPL2629LPL2630LPL2634LPL2635
LPNE272624 LPG2701LPG2702LPG2706LPG2707
LCHO395495 LCHO_0934LCHO_0933LCHO_3451LCHO_3452
KPNE272620 GKPORF_B2962GKPORF_B2963GKPORF_B2964GKPORF_B2965
JSP375286 MMA_3267MMA_3268MMA_0295MMA_0294
ILOI283942 IL0420IL0419IL0415IL0414
HSOM228400 HSM_1222HSM_1221HSM_1220HSM_1219
HSOM205914 HS_0755HS_0754HS_0753HS_0752
HNEP81032 HNE_2391HNE_2315HNE_2316
HINF71421 HI_1440HI_1441HI_1442HI_1443
HINF374930 CGSHIEE_04800CGSHIEE_04805CGSHIEE_04810CGSHIEE_04815
HINF281310 NTHI1690NTHI1689NTHI1688NTHI1687
HHAL349124 HHAL_2105HHAL_2106HHAL_2076HHAL_2077
HDUC233412 HD_1426HD_1425HD_1493HD_1494
HCHE349521 HCH_10003HCH_05897HCH_05901HCH_05902
HARS204773 HEAR3048HEAR3049HEAR0241HEAR0240
FTUL458234 FTA_1249FTA_1692FTA_1252FTA_1253
FTUL418136 FTW_0564FTW_1612FTW_0566FTW_0567
FTUL401614 FTN_1291FTN_0549FTN_1289FTN_1288
FTUL393115 FTF1276FTF0458FTF1274FTF1273
FTUL393011 FTH_1160FTH_1552FTH_1162FTH_1163
FTUL351581 FTL_1184FTL_1606FTL_1186FTL_1187
FRANT SSPBSSPARPSIRPLM
FPHI484022 FPHI_1396FPHI_0288FPHI_1398FPHI_1399
ESP42895 ENT638_3663ENT638_3664ENT638_3665ENT638_3666
EFER585054 EFER_3198EFER_3199EFER_3201EFER_3202
ECOO157 SSPBSSPARPSIRPLM
ECOL83334 ECS4101ECS4102ECS4103ECS4104
ECOL585397 ECED1_3878ECED1_3879ECED1_3880ECED1_3881
ECOL585057 ECIAI39_3717ECIAI39_3718ECIAI39_3720ECIAI39_3721
ECOL585056 ECUMN_3702ECUMN_3703ECUMN_3704ECUMN_3705
ECOL585055 EC55989_3641EC55989_3642EC55989_3643EC55989_3644
ECOL585035 ECS88_3604ECS88_3605ECS88_3606ECS88_3607
ECOL585034 ECIAI1_3370ECIAI1_3371ECIAI1_3372ECIAI1_3373
ECOL481805 ECOLC_0478ECOLC_0477ECOLC_0476ECOLC_0475
ECOL469008 ECBD_0519ECBD_0518ECBD_0517ECBD_0516
ECOL439855 ECSMS35_3523ECSMS35_3524ECSMS35_3525ECSMS35_3527
ECOL413997 ECB_03088ECB_03089ECB_03090ECB_03091
ECOL409438 ECSE_3507ECSE_3508ECSE_3509ECSE_3510
ECOL405955 APECO1_3216APECO1_3215APECO1_3214APECO1_3213
ECOL364106 UTI89_C3657UTI89_C3658UTI89_C3660UTI89_C3661
ECOL362663 ECP_3310ECP_3311ECP_3313ECP_3314
ECOL331111 ECE24377A_3710ECE24377A_3712ECE24377A_3713ECE24377A_3714
ECOL316407 ECK3217:JW3197:B3228ECK3218:JW3198:B3229ECK3219:JW3199:B3230ECK3220:JW3200:B3231
ECOL199310 C3981C3982C3984C3985
ECAR218491 ECA0309ECA0308ECA0307ECA0306
DNOD246195 DNO_0850DNO_0851DNO_1130DNO_1129
DARO159087 DARO_0813DARO_0812DARO_0650DARO_0649
CVIO243365 CV_4004CV_4005CV_3696CV_3697
CVES412965 COSY_0008COSY_0009COSY_0842COSY_0843
CSAL290398 CSAL_2204CSAL_2205CSAL_2206CSAL_2207
CRUT413404 RMAG_0008RMAG_0935RMAG_0936
CPSY167879 CPS_4436CPS_4437CPS_4442CPS_4443
CJAP155077 CJA_2783CJA_2786CJA_2787
CBUR434922 COXBU7E912_0255COXBU7E912_0254COXBU7E912_0253COXBU7E912_0252
CBUR360115 COXBURSA331_A1938COXBURSA331_A1939COXBURSA331_A1940COXBURSA331_A1941
CBUR227377 CBU_1746CBU_1747CBU_1748CBU_1749
BVIE269482 BCEP1808_0424BCEP1808_0423BCEP1808_0646BCEP1808_0645
BTHA271848 BTH_I2973BTH_I2974BTH_I1234BTH_I1233
BSUI470137 BSUIS_A0878BSUIS_A0827BSUIS_A0828
BSUI204722 BR_0839BR_0790BR_0791
BSP36773 BCEP18194_A3543BCEP18194_A3542BCEP18194_A3766BCEP18194_A3765
BPSE320373 BURPS668_3646BURPS668_3647BURPS668_3377BURPS668_3378
BPSE320372 BURPS1710B_A3971BURPS1710B_A3972BURPS1710B_A3695BURPS1710B_A3696
BPSE272560 BPSL3119BPSL3120BPSL2910BPSL2911
BPET94624 BPET0118BPET0119BPET0594BPET0593
BPER257313 BP0273BP0274BP2961BP2962
BPAR257311 BPP4287BPP4286BPP3883BPP3884
BMEL359391 BAB1_0859BAB1_0810BAB1_0811
BMEL224914 BMEI1125BMEI1169BMEI1168
BMAL320389 BMA10247_2744BMA10247_2745BMA10247_2520BMA10247_2519
BMAL320388 BMASAVP1_A3260BMASAVP1_A3259BMASAVP1_A0254BMASAVP1_A0253
BMAL243160 BMA_2694BMA_2695BMA_2342BMA_2341
BJAP224911 BLR4332BLL4962BLL4963
BCEN331272 BCEN2424_0445BCEN2424_0444BCEN2424_0680BCEN2424_0679
BCEN331271 BCEN_2662BCEN_2663BCEN_0197BCEN_0196
BCAN483179 BCAN_A0854BCAN_A0803BCAN_A0804
BBRO257310 BB4874BB4873BB4356BB4357
BAMB398577 BAMMC406_0372BAMMC406_0371BAMMC406_0600BAMMC406_0599
BAMB339670 BAMB_0363BAMB_0362BAMB_0574BAMB_0573
BABO262698 BRUAB1_0852BRUAB1_0804BRUAB1_0805
ASP76114 EBA1194EBA1195EBA937EBA938
ASP62977 ACIAD3015ACIAD3014ACIAD3013ACIAD3012
ASP62928 AZO0964AZO0963AZO2759AZO2760
ASP232721 AJS_0793AJS_0792AJS_0626AJS_0625
ASAL382245 ASA_0339ASA_0338ASA_0334ASA_0333
APLE434271 APJL_0647APJL_0648APJL_0595APJL_0594
APLE416269 APL_0657APL_0658APL_0601APL_0600
AHYD196024 AHA_3899AHA_3900AHA_3904AHA_3905
AFER243159 AFE_2836AFE_2807AFE_0036AFE_0035
AEHR187272 MLG_2207MLG_2208MLG_2241MLG_2242
ABOR393595 ABO_0582ABO_0581ABO_0577ABO_0576
ABAU360910 BAV3333BAV3332BAV2969BAV2970
AAVE397945 AAVE_3692AAVE_3693AAVE_4052AAVE_4053


Organism features enriched in list (features available for 204 out of the 215 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00009031792
Arrangment:Singles 0.0056009113286
Disease:Brucellosis 0.005079655
Disease:Bubonic_plague 0.001748966
Disease:Dysentery 0.001748966
Disease:Gastroenteritis 0.00196181013
Disease:Tularemia 0.005079655
Endospores:No 7.614e-1434211
GC_Content_Range4:0-40 1.901e-2421213
GC_Content_Range4:40-60 3.721e-9111224
GC_Content_Range4:60-100 0.000011272145
GC_Content_Range7:30-40 4.483e-1421166
GC_Content_Range7:50-60 2.766e-1066107
GC_Content_Range7:60-70 1.915e-772134
Genome_Size_Range5:0-2 1.838e-1714155
Genome_Size_Range5:2-4 0.000297351197
Genome_Size_Range5:4-6 2.800e-17110184
Genome_Size_Range5:6-10 0.00006462947
Genome_Size_Range9:0-1 0.0000993127
Genome_Size_Range9:1-2 7.296e-1313128
Genome_Size_Range9:2-3 0.000401027120
Genome_Size_Range9:4-5 4.697e-65396
Genome_Size_Range9:5-6 4.447e-105788
Genome_Size_Range9:6-8 2.511e-62738
Gram_Stain:Gram_Neg 1.138e-40188333
Habitat:Multiple 0.004365175178
Habitat:Specialized 0.0001477753
Motility:No 1.080e-1022151
Motility:Yes 6.821e-9126267
Optimal_temp.:- 0.0051589103257
Optimal_temp.:25-30 0.00007811519
Optimal_temp.:35-37 9.130e-71313
Oxygen_Req:Aerobic 0.008288476185
Oxygen_Req:Anaerobic 5.727e-146102
Oxygen_Req:Facultative 3.924e-8100201
Pathogenic_in:Animal 0.00065483566
Pathogenic_in:No 0.000663962226
Pathogenic_in:Plant 0.00210581115
Shape:Coccobacillus 8.047e-61111
Shape:Coccus 1.936e-61182
Shape:Rod 3.308e-14163347
Shape:Spiral 0.0013572434
Temp._range:Mesophilic 0.0000769182473
Temp._range:Psychrophilic 0.001217689
Temp._range:Thermophilic 3.301e-6135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 246
Effective number of orgs (counting one per cluster within 468 clusters): 214

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis1
WPIP80849 Wolbachia endosymbiont of Brugia malayi1
UURE95667 Ureaplasma urealyticum serovar 131
UURE95664 Ureaplasma urealyticum serovar 101
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278151
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-11
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 70
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSP84588 ncbi Synechococcus sp. WH 81021
SSP64471 ncbi Synechococcus sp. CC93111
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)1
SSP321327 ncbi Synechococcus sp. JA-3-3Ab1
SSP292414 ncbi Ruegeria sp. TM10401
SSP1131 Synechococcus sp. CC96051
SSOL273057 ncbi Sulfolobus solfataricus P20
SRUB309807 ncbi Salinibacter ruber DSM 138551
SPNE170187 ncbi Streptococcus pneumoniae G541
SMAR399550 ncbi Staphylothermus marinus F10
SLAC55218 Ruegeria lacuscaerulensis1
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SELO269084 ncbi Synechococcus elongatus PCC 63011
SCO ncbi Streptomyces coelicolor A3(2)1
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SARE391037 ncbi Salinispora arenicola CNS-2051
SALA317655 ncbi Sphingopyxis alaskensis RB22561
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington1
RSP101510 ncbi Rhodococcus jostii RHA11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa1
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith1
RPRO272947 ncbi Rickettsia prowazekii Madrid E1
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal21
RCON272944 ncbi Rickettsia conorii Malish 71
RCAN293613 ncbi Rickettsia canadensis McKiel1
RBEL391896 ncbi Rickettsia bellii OSU 85-3891
RBEL336407 ncbi Rickettsia bellii RML369-C1
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford1
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP117 Pirellula sp.1
PRUM264731 ncbi Prevotella ruminicola 230
PMOB403833 ncbi Petrotoga mobilis SJ951
PMAR93060 ncbi Prochlorococcus marinus MIT 92151
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96011
PLUT319225 ncbi Chlorobium luteolum DSM 2731
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PAST100379 Onion yellows phytoplasma1
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSP35761 Nocardioides sp.0
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NFAR247156 ncbi Nocardia farcinica IFM 101521
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1550
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LSPH444177 ncbi Lysinibacillus sphaericus C3-411
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LACI272621 ncbi Lactobacillus acidophilus NCFM1
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74211
GOXY290633 ncbi Gluconobacter oxydans 621H1
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH11
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI31
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FMAG334413 ncbi Finegoldia magna ATCC 293281
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
EFAE226185 ncbi Enterococcus faecalis V5831
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRAD243230 ncbi Deinococcus radiodurans R10
DPSY177439 ncbi Desulfotalea psychrophila LSv541
DOLE96561 ncbi Desulfococcus oleovorans Hxd31
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPER289380 ncbi Clostridium perfringens SM1011
CPER195103 ncbi Clostridium perfringens ATCC 131241
CPER195102 ncbi Clostridium perfringens 131
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C1
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138261
CCHL340177 ncbi Chlorobium chlorochromatii CaD31
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80521
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4001
BTUR314724 ncbi Borrelia turicatae 91E1351
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH1
BGAR290434 ncbi Borrelia garinii PBi1
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BBUR224326 ncbi Borrelia burgdorferi B311
BAFZ390236 ncbi Borrelia afzelii PKo1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB1
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.0
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AMAR234826 ncbi Anaplasma marginale St. Maries0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C1
ACRY349163 ncbi Acidiphilium cryptum JF-51
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
ABUT367737 ncbi Arcobacter butzleri RM40180
AAUR290340 ncbi Arthrobacter aurescens TC10
AAEO224324 ncbi Aquifex aeolicus VF51


Names of the homologs of the genes in the group in each of these orgs
  EG10978   EG10977   EG10908   EG10874   
WSUC273121
WPIP955 WD_0066
WPIP80849 WB_0660
UURE95667 UU576
UURE95664 UUR10_0676
UPAR505682 UPA3_0615
UMET351160
TWHI218496
TWHI203267
TVOL273116
TPEN368408
TPAL243276
TLET416591
TKOD69014
TERY203124
TELO197221 TLR0108
TDEN326298
TDEN243275 TDE_0852
TACI273075
STRO369723 STROP_3864
STOK273063
SSUI391295 SSU05_1898
SSP84588 SYNW2093OR2804
SSP64471 GSYN0434
SSP387093 SUN_0189
SSP321332 CYB_1583
SSP321327 CYA_1448
SSP292414 TM1040_1384
SSP1131 SYNCC9605_0350
SSOL273057
SRUB309807 SRU_0038
SPNE170187 SPN08184
SMAR399550
SLAC55218 SL1157_2810
SERY405948 SACE_6781
SELO269084 SYC1891_D
SCO SCO4734
SAVE227882 SAV4957
SARE391037 SARE_4254
SALA317655 SALA_0244
SACI330779
RTYP257363 RT0226
RSP101510 RHA1_RO06170
RSAL288705
RRIC452659 RRIOWA_0381
RRIC392021 A1G_01800
RPRO272947 RP234
RMAS416276
RFEL315456 RF_0995
RCON272944 RC0316
RCAN293613 A1E_01350
RBEL391896 A1I_06600
RBEL336407 RBE_0223
RALB246199
RAKA293614 A1C_01720
PTOR263820
PSP117 RB10469
PRUM264731
PMOB403833 PMOB_0800
PMAR93060 P9215_18041
PMAR74547 PMT1758
PMAR74546 PMT9312_1625
PMAR59920 PMN2A_1103
PMAR167555 NATL1_19781
PMAR167546 P9301ORF_1757
PMAR167542 P9515ORF_1787
PMAR167540 PMM1532
PMAR167539 PRO_1686
PMAR146891 A9601_17401
PLUT319225 PLUT_0401
PISL384616
PINT246198
PHOR70601
PGIN242619
PFUR186497
PDIS435591
PAST100379 PAM139
PARS340102
PAER178306
PACN267747 PPA1803
PABY272844
OTSU357244
NSP387092 NIS_1610
NSP35761
NSEN222891
NPHA348780
NFAR247156 NFA8660
MVAN350058
MTUB419947
MTUB336982
MTHE349307
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP189918
MSP164757
MSP164756
MSME246196
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAEO419665
MACE188937
MABS561007
LXYL281090 LXX20030
LSPH444177 BSPH_4582
LMES203120 LEUM_0231
LJOH257314 LJ_0367
LINT267671 LIC_10761
LINT189518 LA3408
LHEL405566 LHV_0344
LGAS324831 LGAS_0322
LDEL321956 LBUL_0383
LCAS321967
LBOR355277
LBOR355276
LACI272621 LBA0324
KRAD266940 KRAD_0720
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HMUK485914
HMAR272569
HHEP235279
HBUT415426
HAUR316274
HACI382638
GVIO251221 GLL1892
GOXY290633 GOX0451
GFOR411154
GBET391165 GBCGDNIH1_0966
FSUC59374 FSU1421
FSP1855
FSP106370 FRANCCI3_0614
FNUC190304 FN0330
FNOD381764 FNOD_0433
FMAG334413 FMG_1478
FJOH376686
FALN326424
ERUM302409
ERUM254945
EFAE226185 EF_3230
ECHA205920
ECAN269484
DSP255470
DSP216389
DRAD243230
DPSY177439 DP1327
DOLE96561 DOLE_0946
DGEO319795 DGEO_1734
DETH243164
CTRA471473
CTRA471472
CTEP194439 CT_1783
CSUL444179
CPRO264201 PC1757
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPER289380 CPR_2363
CPER195103 CPF_2678
CPER195102 CPE2369
CPEL335992
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CHUT269798 CHU_3039
CHOM360107
CGLU196627
CFET360106
CFEL264202
CEFF196164
CDIP257309
CDES477974 DAUD_0331
CCUR360105
CCON360104 CCC13826_0737
CCHL340177 CAG_1650
CCAV227941
CBEI290402 CBEI_0187
CABO218497
BXEN266265 BXE_C1190
BTUR314724 BT0338
BTHE226186
BLON206672 BL1572
BHER314723 BH0338
BGAR290434 BG0339
BFRA295405
BFRA272559
BBUR224326 BB_0338
BAFZ390236 BAPKO_0347
AYEL322098 AYWB_581
AURANTIMONAS
ASP1667
APHA212042
APER272557
AMAR234826
AFUL224325
ADEH290397 ADEH_3371
ACRY349163 ACRY_2249
ACEL351607 ACEL_0341
ABUT367737
AAUR290340
AAEO224324 AQ_1877


Organism features enriched in list (features available for 231 out of the 246 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00026972292
Arrangment:Pairs 1.179e-721112
Arrangment:Singles 0.0030858128286
Disease:Pharyngitis 0.000564088
Disease:bronchitis_and_pneumonitis 0.000564088
Endospores:No 1.801e-8115211
Endospores:Yes 0.00695241353
GC_Content_Range4:0-40 0.0001926104213
GC_Content_Range4:40-60 0.003929375224
GC_Content_Range7:0-30 0.00002763247
GC_Content_Range7:50-60 0.000252427107
GC_Content_Range7:60-70 0.004050541134
GC_Content_Range7:70-100 0.00057171011
Genome_Size_Range5:0-2 9.244e-20109155
Genome_Size_Range5:4-6 2.024e-1531184
Genome_Size_Range9:0-1 0.00003572127
Genome_Size_Range9:1-2 3.028e-1488128
Genome_Size_Range9:4-5 1.258e-61896
Genome_Size_Range9:5-6 3.804e-81388
Gram_Stain:Gram_Neg 1.402e-7102333
Habitat:Multiple 0.000011348178
Habitat:Specialized 0.00027093353
Motility:No 0.000176478151
Motility:Yes 1.617e-776267
Optimal_temp.:25-30 0.0007400119
Optimal_temp.:30-37 0.0011823118
Optimal_temp.:37 0.002860754106
Oxygen_Req:Anaerobic 3.050e-661102
Oxygen_Req:Facultative 3.911e-1537201
Shape:Irregular_coccus 1.012e-71717
Shape:Oval 0.009511855
Shape:Rod 5.265e-10102347
Shape:Sphere 0.00006171619
Shape:Spiral 1.134e-62734
Temp._range:Hyperthermophilic 0.00001931923
Temp._range:Mesophilic 0.0007223173473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3002090.7127
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181750.7063
GLYCOCAT-PWY (glycogen degradation I)2461870.7053
PWY-1269 (CMP-KDO biosynthesis I)3252110.6681
PWY-5918 (heme biosynthesis I)2721920.6681
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951560.6459
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861940.6457
PWY-4041 (γ-glutamyl cycle)2791910.6431
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911940.6333
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901930.6290
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961950.6278
NAGLIPASYN-PWY (lipid IVA biosynthesis)3482120.6249
GLUTATHIONESYN-PWY (glutathione biosynthesis)3392090.6238
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251660.6210
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831460.6141
PWY-5913 (TCA cycle variation IV)3011930.6022
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911460.5865
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491250.5824
TYRFUMCAT-PWY (tyrosine degradation I)1841420.5810
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911450.5791
AST-PWY (arginine degradation II (AST pathway))1201070.5615
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291960.5577
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761350.5569
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551670.5425
PWY-5386 (methylglyoxal degradation I)3051840.5318
PWY-5148 (acyl-CoA hydrolysis)2271510.5098
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3982090.5036
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81770.4924
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491570.4899
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491570.4899
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96850.4851
GLUCONSUPER-PWY (D-gluconate degradation)2291480.4830
DAPLYSINESYN-PWY (lysine biosynthesis I)3421890.4816
PWY-5669 (phosphatidylethanolamine biosynthesis I)4162100.4762
PLPSAL-PWY (pyridoxal 5'-phosphate salvage pathway)3741980.4751
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222110.4721
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112920.4691
P344-PWY (acrylonitrile degradation)2101380.4680
PWY-5084 (2-ketoglutarate dehydrogenase complex)3261810.4630
KDOSYN-PWY (KDO transfer to lipid IVA I)1801240.4610
GALACTITOLCAT-PWY (galactitol degradation)73690.4599
REDCITCYC (TCA cycle variation II)1741210.4587
PWY-5028 (histidine degradation II)1301000.4581
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)1791230.4568
P601-PWY (D-camphor degradation)95810.4528
PWY-3162 (tryptophan degradation V (side chain pathway))94800.4486
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94790.4392
CHOLINE-BETAINE-ANA-PWY (choline degradation I)1351000.4377
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561100.4377
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001680.4356
PWY-46 (putrescine biosynthesis III)1381010.4340
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))1381010.4340
PWY-5188 (tetrapyrrole biosynthesis I)4392100.4330
GLUT-REDOX-PWY (glutathione redox reactions II)2461470.4290
POLYISOPRENSYN-PWY (polyisoprenoid biosynthesis (E. coli))116890.4247
LIPASYN-PWY (phospholipases)2121320.4193
PWY0-501 (lipoate biosynthesis and incorporation I)3851930.4179
PWY-6087 (4-chlorocatechol degradation)2231360.4158
PWY-5340 (sulfate activation for sulfonation)3851920.4109
PWY-561 (superpathway of glyoxylate cycle)1621090.4087
GLYOXYLATE-BYPASS (glyoxylate cycle)1691120.4076
PWY-1501 (mandelate degradation I)73640.4074
GLUCARDEG-PWY (D-glucarate degradation I)1521040.4052
PWY0-1182 (trehalose degradation II (trehalase))70620.4046



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG10977   EG10908   EG10874   
EG109780.9998820.9994650.999421
EG109770.9994450.99939
EG109080.999998
EG10874



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PAIRWISE BLAST SCORES:

  EG10978   EG10977   EG10908   EG10874   
EG109780.0f0---
EG10977-0.0f0--
EG10908--0.0f0-
EG10874---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- CPLX0-3964 (ribosome) (degree of match pw to cand: 0.034, degree of match cand to pw: 0.500, average score: 0.685)
  Genes in pathway or complex:
                NIL    NIL EG30077 (rrlA) RRLA-RRNA (23S ribosomal RNA (rrlA))
                NIL    NIL EG30070 (rrfA) RRFA-RRNA (5S ribosomal RNA (rrfA))
             0.9733 0.9366 EG10864 (rplA) EG10864-MONOMER (50S ribosomal subunit protein L1)
             0.9868 0.9692 EG10865 (rplB) EG10865-MONOMER (50S ribosomal subunit protein L2)
             0.9842 0.9657 EG10866 (rplC) EG10866-MONOMER (50S ribosomal subunit protein L3)
             0.9849 0.9685 EG10867 (rplD) EG10867-MONOMER (50S ribosomal subunit protein L4)
             0.9878 0.9742 EG10868 (rplE) EG10868-MONOMER (50S ribosomal subunit protein L5)
             0.9893 0.9752 EG10869 (rplF) EG10869-MONOMER (50S ribosomal subunit protein L6)
             0.9736 0.9372 EG10873 (rplL) MONOMER0-2811 (50S ribosomal subunit protein L7)
             0.9712 0.9370 EG10871 (rplJ) EG10871-MONOMER (50S ribosomal subunit protein L10)
             0.8234 0.5216 EG10870 (rplI) EG10870-MONOMER (50S ribosomal subunit protein L9)
             0.9724 0.9368 EG10872 (rplK) EG10872-MONOMER (50S ribosomal subunit protein L11)
   *in cand* 0.9997 0.9994 EG10874 (rplM) EG10874-MONOMER (50S ribosomal subunit protein L13)
             0.9883 0.9727 EG10875 (rplN) EG10875-MONOMER (50S ribosomal subunit protein L14)
             0.9888 0.9766 EG10876 (rplO) EG10876-MONOMER (50S ribosomal subunit protein L15)
             0.9866 0.9706 EG10877 (rplP) EG10877-MONOMER (50S ribosomal subunit protein L16)
             0.9910 0.9822 EG10878 (rplQ) EG10878-MONOMER (50S ribosomal subunit protein L17)
             0.9891 0.9756 EG10879 (rplR) EG10879-MONOMER (50S ribosomal subunit protein L18)
             0.0681 0.0022 EG10880 (rplS) EG10880-MONOMER (50S ribosomal subunit protein L19)
             0.0391 0.0014 EG10881 (rplT) EG10881-MONOMER (50S ribosomal subunit protein L20)
             0.9876 0.9772 EG50001 (rplU) EG50001-MONOMER (50S ribosomal subunit protein L21)
             0.9850 0.9699 EG10882 (rplV) EG10882-MONOMER (50S ribosomal subunit protein L22)
             0.9839 0.9650 EG10883 (rplW) EG10883-MONOMER (50S ribosomal subunit protein L23)
             0.9889 0.9748 EG10884 (rplX) EG10884-MONOMER (50S ribosomal subunit protein L24)
             0.7405 0.6570 EG10885 (rplY) EG10885-MONOMER (50S ribosomal subunit protein L25)
             0.9827 0.9704 EG50002 (rpmA) EG50002-MONOMER (50S ribosomal subunit protein L27)
             0.5086 0.4150 EG10886 (rpmB) EG10886-MONOMER (50S ribosomal subunit protein L28)
             0.9840 0.9634 EG10887 (rpmC) EG10887-MONOMER (50S ribosomal subunit protein L29)
             0.9906 0.9781 EG10888 (rpmD) EG10888-MONOMER (50S ribosomal subunit protein L30)
             0.9372 0.8872 EG10889 (rpmE) EG10889-MONOMER (50S ribosomal subunit protein L31)
             0.0106 0.0006 EG10890 (rpmF) EG10890-MONOMER (50S ribosomal subunit protein L32)
             0.8872 0.6434 EG10891 (rpmG) EG10891-MONOMER (50S ribosomal subunit protein L33)
             0.8606 0.8390 EG10892 (rpmH) EG10892-MONOMER (50S ribosomal subunit protein L34)
             0.0962 0.0506 EG11231 (rpmI) EG11231-MONOMER (50S ribosomal subunit protein L35)
             0.9826 0.9650 EG11232 (rpmJ) EG11232-MONOMER (50S ribosomal subunit protein L36)
                NIL    NIL EG30084 (rrsA) RRSA-RRNA (16S ribosomal RNA (rrsA))
             0.1002 0.0012 EG10900 (rpsA) EG10900-MONOMER (30S ribosomal subunit protein S1)
             0.3911 0.0449 EG10901 (rpsB) EG10901-MONOMER (30S ribosomal subunit protein S2)
             0.9871 0.9702 EG10902 (rpsC) EG10902-MONOMER (30S ribosomal subunit protein S3)
             0.9890 0.9767 EG10903 (rpsD) EG10903-MONOMER (30S ribosomal subunit protein S4)
             0.9895 0.9759 EG10904 (rpsE) EG10904-MONOMER (30S ribosomal subunit protein S5)
             0.7961 0.5180 EG10905 (rpsF) EG10905-MONOMER (30S ribosomal subunit protein S6)
             0.9883 0.9718 EG10906 (rpsG) EG10906-MONOMER (30S ribosomal subunit protein S7)
             0.9875 0.9748 EG10907 (rpsH) EG10907-MONOMER (30S ribosomal subunit protein S8)
   *in cand* 0.9997 0.9994 EG10908 (rpsI) EG10908-MONOMER (30S ribosomal subunit protein S9)
             0.9859 0.9675 EG10909 (rpsJ) EG10909-MONOMER (30S ribosomal subunit protein S10)
             0.9891 0.9759 EG10910 (rpsK) EG10910-MONOMER (30S ribosomal subunit protein S11)
             0.9863 0.9701 EG10911 (rpsL) EG10911-MONOMER (30S ribosomal subunit protein S12)
             0.9902 0.9776 EG10912 (rpsM) EG10912-MONOMER (30S ribosomal subunit protein S13)
             0.9755 0.9647 EG10913 (rpsN) EG10913-MONOMER (30S ribosomal subunit protein S14)
             0.7164 0.4701 EG10914 (rpsO) EG10914-MONOMER (30S ribosomal subunit protein S15)
             0.1329 0.0026 EG10915 (rpsP) EG10915-MONOMER (30S ribosomal subunit protein S16)
             0.9872 0.9673 EG10916 (rpsQ) EG10916-MONOMER (30S ribosomal subunit protein S17)
             0.8042 0.5318 EG10917 (rpsR) EG10917-MONOMER (30S ribosomal subunit protein S18)
             0.9829 0.9644 EG10918 (rpsS) EG10918-MONOMER (30S ribosomal subunit protein S19)
             0.3449 0.0527 EG10919 (rpsT) EG10919-MONOMER (30S ribosomal subunit protein S20)
             0.6900 0.3953 EG10920 (rpsU) EG10920-MONOMER (30S ribosomal subunit protein S21)
             0.0921 0.0918 EG11508 (sra) EG11508-MONOMER (30S ribosomal subunit protein S22)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9994 EG10977 (sspA) EG10977-MONOMER (stringent starvation protein A)
   *in cand* 0.9997 0.9994 EG10978 (sspB) EG10978-MONOMER (SspB)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10874 EG10908 EG10977 EG10978 (centered at EG10908)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG10978   EG10977   EG10908   EG10874   
187/623235/623417/623415/623
AAEO224324:0:Tyes---0
AAVE397945:0:Tyes01353354
ABAC204669:0:Tyes--10
ABAU360910:0:Tyes36536401
ABOR393595:0:Tyes6510
ACAU438753:0:Tyes--10
ACEL351607:0:Tyes---0
ACRY349163:8:Tyes--0-
ADEH290397:0:Tyes--0-
AEHR187272:0:Tyes013435
AFER243159:0:Tyes2762273310
AHYD196024:0:Tyes0156
ALAI441768:0:Tyes--10
AMAR329726:9:Tyes-4057-0
AMET293826:0:Tyes--01
ANAE240017:0:Tyes--10
AORE350688:0:Tyes--10
APLE416269:0:Tyes565710
APLE434271:0:Tno535410
ASAL382245:5:Tyes6510
ASP232721:2:Tyes16516410
ASP62928:0:Tyes1018321833
ASP62977:0:Tyes3210
ASP76114:2:Tyes13313401
AVAR240292:3:Tyes-4312-0
AYEL322098:4:Tyes--0-
BABO262698:1:Tno-4801
BAFZ390236:2:Fyes--0-
BAMB339670:3:Tno10224223
BAMB398577:3:Tno10232231
BAMY326423:0:Tyes--10
BANT260799:0:Tno--10
BANT261594:2:Tno--10
BANT568206:2:Tyes--10
BANT592021:2:Tno--10
BAPH198804:0:Tyes--01
BAPH372461:0:Tyes--01
BBAC264462:0:Tyes-25420-
BBAC360095:0:Tyes--10
BBRO257310:0:Tyes51851701
BBUR224326:21:Fno--0-
BCAN483179:1:Tno-5101
BCEN331271:2:Tno2494249510
BCEN331272:3:Tyes10235234
BCER226900:1:Tyes--10
BCER288681:0:Tno--10
BCER315749:1:Tyes--10
BCER405917:1:Tyes--10
BCER572264:1:Tno--10
BCIC186490:0:Tyes--10
BCLA66692:0:Tyes--10
BGAR290434:2:Fyes--0-
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BXEN266265:0:Tyes-0--
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CSP501479:5:Fyes-0--
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ESP42895:1:Tyes0123
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FRANT:0:Tno7500748747
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FTUL401614:0:Tyes7370735734
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GMET269799:1:Tyes--10
GOXY290633:5:Tyes--0-
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GTHE420246:1:Tyes--10
GURA351605:0:Tyes--10
GVIO251221:0:Tyes-0--
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HCHE349521:0:Tyes0156
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HINF374930:0:Tyes0123
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HNEP81032:0:Tyes-7601
HSOM205914:1:Tyes3210
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KPNE272620:2:Tyes0123
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MAER449447:0:Tyes-0-3701
MAQU351348:2:Tyes0156
MCAP243233:0:Tyes1002100310
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MMAR394221:0:Tyes-013921393
MPET420662:1:Tyes1022972298
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MXAN246197:0:Tyes-19640-
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NMEN122587:0:Tyes11811710
NMEN272831:0:Tno01106107
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NWIN323098:0:Tyes-29110
OANT439375:5:Tyes-0113112
OCAR504832:0:Tyes-0141140
OIHE221109:0:Tyes--10
PACN267747:0:Tyes---0
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PCAR338963:0:Tyes--01
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REUT264198:3:Tyes2644264510
REUT381666:2:Tyes2830283110
RFEL315456:2:Tyes--0-
RFER338969:1:Tyes2247224610
RLEG216596:6:Tyes-108601
RMET266264:2:Tyes2802280310
RPAL258594:0:Tyes-39110
RPAL316055:0:Tyes-55510
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RPAL316057:0:Tyes--10
RPAL316058:0:Tyes-017761775
RPOM246200:1:Tyes-15350-
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RRUB269796:1:Tyes-103701
RSOL267608:1:Tyes2488248910
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RSPH272943:4:Tyes--01
RSPH349101:2:Tno-116401
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RTYP257363:0:Tno--0-
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SCO:2:Fyes---0
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XAUT78245:1:Tyes-010271026
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ZMOB264203:0:Tyes--01



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