CANDIDATE ID: 351

CANDIDATE ID: 351

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9967067e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    7.5000350e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG10966 (spoT) (b3650)
   Products of gene:
     - SPOT-MONOMER (guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase [multifunctional])
       Reactions:
        pppGpp + H2O  ->  GTP + diphosphate + H+
         In pathways
         PPGPPMET-PWY (ppGpp biosynthesis)
        ATP + GDP  ->  AMP + ppGpp + H+
         In pathways
         PPGPPMET-PWY (ppGpp biosynthesis)
        ppGpp + H2O  ->  diphosphate + GDP + H+
         In pathways
         PPGPPMET-PWY (ppGpp biosynthesis)

- EG10965 (gmk) (b3648)
   Products of gene:
     - GUANYL-KIN-MONOMER (Gmk)
     - GUANYL-KIN-CPLX (deoxyguanylate kinase / guanylate kinase)
       Reactions:
        ATP + dGMP  =  ADP + 2'-deoxyguanosine-5'-diphosphate + H+
        GMP + ATP  =  GDP + ADP + H+
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I)
         PWY-6125 (guanosine nucleotides de novo biosynthesis)
         P1-PWY (P1-PWY)

- EG10899 (rpoZ) (b3649)
   Products of gene:
     - EG10899-MONOMER (RNA polymerase, ω subunit)

- EG10723 (phnN) (b4094)
   Products of gene:
     - EG10723-MONOMER (ribose 1,5-bisphosphokinase)
       Reactions:
        ribose-1,5-bisphosphate + ATP  ->  5-phospho-alpha-D-ribose 1-diphosphate + ADP + H+
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         PWY0-661 (PRPP biosynthesis II)
         PWY-5532 (PWY-5532)



Back to top


ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 258
Effective number of orgs (counting one per cluster within 468 clusters): 182

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM43
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A3
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110183
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103313
XFAS405440 ncbi Xylella fastidiosa M123
XFAS183190 ncbi Xylella fastidiosa Temecula13
XFAS160492 ncbi Xylella fastidiosa 9a5c3
XCAM487884 Xanthomonas campestris pv. paulliniae3
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-103
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80043
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339133
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3063
XAUT78245 ncbi Xanthobacter autotrophicus Py23
VVUL216895 ncbi Vibrio vulnificus CMCP63
VVUL196600 ncbi Vibrio vulnificus YJ0163
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1143
VEIS391735 ncbi Verminephrobacter eiseniae EF01-24
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TTUR377629 ncbi Teredinibacter turnerae T79014
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB43
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332233
TELO197221 ncbi Thermosynechococcus elongatus BP-13
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252594
TCRU317025 ncbi Thiomicrospira crunogena XCL-24
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
STHE292459 ncbi Symbiobacterium thermophilum IAM 148633
SSP94122 ncbi Shewanella sp. ANA-34
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)3
SSP321327 ncbi Synechococcus sp. JA-3-3Ab3
SSP292414 ncbi Ruegeria sp. TM10404
SSP1148 ncbi Synechocystis sp. PCC 68033
SSON300269 ncbi Shigella sonnei Ss0464
SSED425104 ncbi Shewanella sediminis HAW-EB34
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153053
SPRO399741 ncbi Serratia proteamaculans 5684
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-14
SMEL266834 ncbi Sinorhizobium meliloti 10213
SMED366394 ncbi Sinorhizobium medicae WSM4193
SLOI323850 ncbi Shewanella loihica PV-44
SLAC55218 Ruegeria lacuscaerulensis3
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SGLO343509 ncbi Sodalis glossinidius morsitans3
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB4
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SELO269084 ncbi Synechococcus elongatus PCC 63013
SDYS300267 ncbi Shigella dysenteriae Sd1974
SDEN318161 ncbi Shewanella denitrificans OS2174
SDEG203122 ncbi Saccharophagus degradans 2-404
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
SACI56780 ncbi Syntrophus aciditrophicus SB3
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99413
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170253
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170293
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.13
RSOL267608 ncbi Ralstonia solanacearum GMI10003
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111703
RPOM246200 ncbi Ruegeria pomeroyi DSS-34
RPAL316058 ncbi Rhodopseudomonas palustris HaA23
RPAL316057 ncbi Rhodopseudomonas palustris BisB53
RPAL316056 ncbi Rhodopseudomonas palustris BisB184
RPAL316055 ncbi Rhodopseudomonas palustris BisA533
RPAL258594 ncbi Rhodopseudomonas palustris CGA0093
RMET266264 ncbi Ralstonia metallidurans CH344
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38413
RFER338969 ncbi Rhodoferax ferrireducens T1184
REUT381666 ncbi Ralstonia eutropha H164
REUT264198 ncbi Ralstonia eutropha JMP1344
RETL347834 ncbi Rhizobium etli CFN 423
RDEN375451 ncbi Roseobacter denitrificans OCh 1144
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PSP56811 Psychrobacter sp.3
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-14
PSP296591 ncbi Polaromonas sp. JS6664
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS94
PNAP365044 ncbi Polaromonas naphthalenivorans CJ24
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PMEN399739 ncbi Pseudomonas mendocina ymp4
PMAR93060 ncbi Prochlorococcus marinus MIT 92153
PMAR74546 ncbi Prochlorococcus marinus MIT 93123
PMAR146891 ncbi Prochlorococcus marinus AS96013
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 374
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PFLU220664 ncbi Pseudomonas fluorescens Pf-53
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PCRY335284 ncbi Psychrobacter cryohalolentis K53
PATL342610 ncbi Pseudoalteromonas atlantica T6c3
PARC259536 ncbi Psychrobacter arcticus 273-43
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
OANT439375 ncbi Ochrobactrum anthropi ATCC 491884
NSP103690 ncbi Nostoc sp. PCC 71203
NOCE323261 ncbi Nitrosococcus oceani ATCC 197073
NMUL323848 ncbi Nitrosospira multiformis ATCC 251963
NMEN374833 ncbi Neisseria meningitidis 0534424
NMEN272831 ncbi Neisseria meningitidis FAM184
NMEN122587 ncbi Neisseria meningitidis Z24914
NMEN122586 ncbi Neisseria meningitidis MC584
NGON242231 ncbi Neisseria gonorrhoeae FA 10904
NEUT335283 ncbi Nitrosomonas eutropha C913
NEUR228410 ncbi Nitrosomonas europaea ATCC 197183
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124443
MXAN246197 ncbi Myxococcus xanthus DK 16223
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSP409 Methylobacterium sp.4
MSP400668 ncbi Marinomonas sp. MWYL14
MSP266779 ncbi Chelativorans sp. BNC13
MPET420662 ncbi Methylibium petroleiphilum PM14
MMAG342108 ncbi Magnetospirillum magneticum AMB-13
MLOT266835 ncbi Mesorhizobium loti MAFF3030993
MFLA265072 ncbi Methylobacillus flagellatus KT4
MEXT419610 ncbi Methylobacterium extorquens PA13
MCAP243233 ncbi Methylococcus capsulatus Bath3
MAQU351348 ncbi Marinobacter aquaeolei VT84
LPNE400673 ncbi Legionella pneumophila Corby3
LPNE297246 ncbi Legionella pneumophila Paris4
LPNE297245 ncbi Legionella pneumophila Lens4
LCHO395495 ncbi Leptothrix cholodnii SP-63
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP375286 ncbi Janthinobacterium sp. Marseille4
JSP290400 ncbi Jannaschia sp. CCS14
ILOI283942 ncbi Idiomarina loihiensis L2TR3
HSOM228400 ncbi Haemophilus somnus 23363
HSOM205914 ncbi Haemophilus somnus 129PT3
HMOD498761 ncbi Heliobacterium modesticaldum Ice13
HINF71421 ncbi Haemophilus influenzae Rd KW204
HINF374930 ncbi Haemophilus influenzae PittEE4
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HHAL349124 ncbi Halorhodospira halophila SL13
HDUC233412 ncbi Haemophilus ducreyi 35000HP3
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HARS204773 ncbi Herminiimonas arsenicoxydans4
GURA351605 ncbi Geobacter uraniireducens Rf43
GSUL243231 ncbi Geobacter sulfurreducens PCA3
GMET269799 ncbi Geobacter metallireducens GS-153
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-003
FTUL418136 ncbi Francisella tularensis tularensis WY96-34183
FTUL401614 ncbi Francisella novicida U1123
FTUL393115 ncbi Francisella tularensis tularensis FSC1983
FTUL393011 ncbi Francisella tularensis holarctica OSU183
FTUL351581 Francisella tularensis holarctica FSC2003
FRANT ncbi Francisella tularensis tularensis SCHU S43
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250173
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DRED349161 ncbi Desulfotomaculum reducens MI-13
DOLE96561 ncbi Desulfococcus oleovorans Hxd33
DNOD246195 ncbi Dichelobacter nodosus VCS1703A3
DHAF138119 ncbi Desulfitobacterium hafniense Y513
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G203
DARO159087 ncbi Dechloromonas aromatica RCB4
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA4
CSP501479 Citreicella sp. SE454
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)3
CPSY167879 ncbi Colwellia psychrerythraea 34H4
CPER289380 ncbi Clostridium perfringens SM1013
CPER195103 ncbi Clostridium perfringens ATCC 131243
CPER195102 ncbi Clostridium perfringens 133
CJAP155077 Cellvibrio japonicus3
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1113
CBUR360115 ncbi Coxiella burnetii RSA 3313
CBUR227377 ncbi Coxiella burnetii RSA 4933
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B3
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80523
CACE272562 ncbi Clostridium acetobutylicum ATCC 8243
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTHA271848 ncbi Burkholderia thailandensis E2644
BSUI470137 ncbi Brucella suis ATCC 234453
BSUI204722 ncbi Brucella suis 13303
BSP376 Bradyrhizobium sp.4
BSP36773 Burkholderia sp.4
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii4
BPER257313 ncbi Bordetella pertussis Tohama I4
BPAR257311 ncbi Bordetella parapertussis 128224
BOVI236 Brucella ovis3
BMEL359391 ncbi Brucella melitensis biovar Abortus 23083
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M3
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1104
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BCAN483179 ncbi Brucella canis ATCC 233653
BBRO257310 ncbi Bordetella bronchiseptica RB504
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9413
AVAR240292 ncbi Anabaena variabilis ATCC 294133
ASP76114 ncbi Aromatoleum aromaticum EbN14
ASP62977 ncbi Acinetobacter sp. ADP13
ASP62928 ncbi Azoarcus sp. BH724
ASP232721 ncbi Acidovorax sp. JS424
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AHYD196024 Aeromonas hydrophila dhakensis3
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232704
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C3
ACRY349163 ncbi Acidiphilium cryptum JF-54
ACAU438753 ncbi Azorhizobium caulinodans ORS 5714
ABOR393595 ncbi Alcanivorax borkumensis SK23
ABAU360910 ncbi Bordetella avium 197N4
AAVE397945 ncbi Acidovorax citrulli AAC00-14


Names of the homologs of the genes in the group in each of these orgs
  EG10966   EG10965   EG10899   EG10723   
ZMOB264203 ZMO0086ZMO0433ZMO1720
YPSE349747 YPSIP31758_0039YPSIP31758_0041YPSIP31758_0040YPSIP31758_3567
YPSE273123 YPTB0035YPTB0037YPTB0036YPTB0509
YPES386656 YPDSF_3867YPDSF_3865YPDSF_3866YPDSF_3274
YPES377628 YPN_3812YPN_3810YPN_3811YPN_0623
YPES360102 YPA_3504YPA_3502YPA_3503YPA_2966
YPES349746 YPANGOLA_A0043YPANGOLA_A0045YPANGOLA_A0044YPANGOLA_A4024
YPES214092 YPO0038YPO0040YPO0039YPO3464
YPES187410 Y0103Y0101Y0102Y0721
YENT393305 YE0045YE0047YE0046YE0470
XORY360094 XOOORF_4200XOOORF_4203XOOORF_4201
XORY342109 XOO1046XOO1042XOO1045
XORY291331 XOO1149XOO1145XOO1148
XFAS405440 XFASM12_1874XFASM12_0843XFASM12_0842
XFAS183190 PD_1707PD_0720PD_0719
XFAS160492 XF0352XF1503XF1502
XCAM487884 XCC-B100_0937XCC-B100_0935XCC-B100_0936
XCAM316273 XCAORF_3587XCAORF_3590XCAORF_3588
XCAM314565 XC_0956XC_0958XC_0957
XCAM190485 XCC3247XCC3249XCC3248
XAXO190486 XAC3393XAC3395XAC3394
XAUT78245 XAUT_3136XAUT_3837XAUT_1309
VVUL216895 VV1_0852VV1_0850VV1_0851
VVUL196600 VV0241VV0243VV0242
VPAR223926 VP0159VP0161VP0160VP0161
VFIS312309 VF0104VF0106VF0105
VEIS391735 VEIS_4220VEIS_4218VEIS_4219VEIS_2955
VCHO345073 VC0395_A2282VC0395_A2280VC0395_A2281VC0395_A2280
VCHO VC2710VC2708VC2709VC2708
TTUR377629 TERTU_0172TERTU_0174TERTU_0173TERTU_0174
TTEN273068 TTE1195TTE1511TTE1511
TPSE340099 TETH39_1028TETH39_1324TETH39_1324
TELO197221 TLL0584TLL0054TLL0054
TDEN292415 TBD_0471TBD_0473TBD_0472TBD_2289
TCRU317025 TCR_2144TCR_2138TCR_2143TCR_2089
STYP99287 STM3742STM3740STM3741STM3740
STHE292459 STH2437STH1339STH1339
SSP94122 SHEWANA3_3812SHEWANA3_3810SHEWANA3_3811SHEWANA3_3810
SSP321332 CYB_1543CYB_0056CYB_0056
SSP321327 CYA_1944CYA_2697CYA_2697
SSP292414 TM1040_2565TM1040_1266TM1040_2566TM1040_3697
SSP1148 SLR1325SLR1123SLR1123
SSON300269 SSO_3755SSO_3757SSO_3756SSO_4270
SSED425104 SSED_0334SSED_0336SSED_0335SSED_0336
SSAP342451 SSP1125SSP1562SSP1562
SPRO399741 SPRO_4869SPRO_4867SPRO_4868SPRO_0514
SPEA398579 SPEA_3879SPEA_3877SPEA_3878SPEA_3877
SONE211586 SO_0359SO_0361SO_0360SO_0361
SMEL266834 SMC00577SMC02408SMB21170
SMED366394 SMED_0759SMED_0676SMED_4662
SLOI323850 SHEW_3499SHEW_3497SHEW_3498SHEW_3497
SLAC55218 SL1157_1883SL1157_2859SL1157_1882
SHIGELLA SPOTGMKRPOZGMK
SHAL458817 SHAL_0390SHAL_0392SHAL_0391SHAL_0392
SGLO343509 SG2223SG2221SG2222
SFUM335543 SFUM_2111SFUM_3630SFUM_1758SFUM_3630
SFLE373384 SFV_3879SFV_3881SFV_3880SFV_3881
SFLE198214 AAN45137.1AAN45135.1AAN45136.1AAN45135.1
SENT454169 SEHA_C4068SEHA_C4066SEHA_C4067SEHA_C4066
SENT321314 SCH_3666SCH_3664SCH_3665SCH_3664
SENT295319 SPA3594SPA3592SPA3593SPA3592
SENT220341 STY4050STY4052STY4051STY4052
SENT209261 T3776T3778T3777T3778
SELO269084 SYC0179_CSYC0359_CSYC0359_C
SDYS300267 SDY_4082SDY_4080SDY_4081SDY_4122
SDEN318161 SDEN_3435SDEN_3433SDEN_3434SDEN_3433
SDEG203122 SDE_3697SDE_3695SDE_3696SDE_3695
SBOY300268 SBO_3727SBO_3729SBO_3728SBO_4120
SBAL402882 SHEW185_0351SHEW185_0353SHEW185_0352SHEW185_0353
SBAL399599 SBAL195_0358SBAL195_0360SBAL195_0359SBAL195_0360
SACI56780 SYN_00904SYN_01280SYN_01279
RXYL266117 RXYL_1338RXYL_1473RXYL_1473
RSPH349102 RSPH17025_2576RSPH17025_1104RSPH17025_2577
RSPH349101 RSPH17029_0303RSPH17029_1563RSPH17029_0302
RSPH272943 RSP_1670RSP_2919RSP_1669
RSOL267608 RSC2153RSC2155RSC2154
RRUB269796 RRU_A1856RRU_A0429RRU_A1857
RPOM246200 SPO_3203SPO_1945SPO_3204SPO_0474
RPAL316058 RPB_2472RPB_2607RPB_4096
RPAL316057 RPD_2974RPD_2646RPD_3832
RPAL316056 RPC_2635RPC_2305RPC_2634RPC_1279
RPAL316055 RPE_3301RPE_3027RPE_3103
RPAL258594 RPA3069RPA2692RPA0688
RMET266264 RMET_0858RMET_0856RMET_0857RMET_0770
RLEG216596 RL1563RL1505RL0163
RFER338969 RFER_3149RFER_3147RFER_3148RFER_0148
REUT381666 H16_A0955H16_A0953H16_A0954H16_B1291
REUT264198 REUT_A2471REUT_A2473REUT_A2472REUT_B4182
RETL347834 RHE_CH01448RHE_CH01384RHE_CH00154
RDEN375451 RD1_1359RD1_2638RD1_1358RD1_2388
PSYR223283 PSPTO_0073PSPTO_0075PSPTO_0074PSPTO_2566
PSYR205918 PSYR_0209PSYR_0211PSYR_0210PSYR_2258
PSTU379731 PST_0459PST_0461PST_0460PST_4122
PSP56811 PSYCPRWF_0577PSYCPRWF_0576PSYCPRWF_0577
PSP312153 PNUC_1076PNUC_1078PNUC_1077PNUC_1078
PSP296591 BPRO_1333BPRO_1335BPRO_1334BPRO_1335
PPUT76869 PPUTGB1_5350PPUTGB1_5344PPUTGB1_5349PPUTGB1_3974
PPUT351746 PPUT_5211PPUT_5204PPUT_5210PPUT_1446
PPUT160488 PP_5302PP_5296PP_5301PP_4469
PPRO298386 PBPRA0189PBPRA0191PBPRA0190PBPRA0191
PNAP365044 PNAP_0809PNAP_0811PNAP_0810PNAP_0811
PMUL272843 PM0920PM0922PM0921PM0922
PMEN399739 PMEN_4390PMEN_4388PMEN_4389PMEN_2879
PMAR93060 P9215_02091P9215_05471P9215_05471
PMAR74546 PMT9312_0193PMT9312_0467PMT9312_0467
PMAR146891 A9601_02091A9601_05231A9601_05231
PLUM243265 PLU0272PLU0274PLU0273PLU0274
PING357804 PING_0203PING_3623PING_3624PING_3685
PHAL326442 PSHAA2793PSHAA2790PSHAA2791PSHAA2790
PFLU220664 PFL_6063PFL_6061PFL_6062
PFLU216595 PFLU5995PFLU5993PFLU5994PFLU1788
PFLU205922 PFL_5551PFL_5549PFL_5550PFL_4269
PENT384676 PSEEN5447PSEEN5441PSEEN5446PSEEN3864
PCRY335284 PCRYO_2003PCRYO_2004PCRYO_2003
PATL342610 PATL_0349PATL_0347PATL_0348
PARC259536 PSYC_1723PSYC_1724PSYC_1723
PAER208964 PA5338PA5336PA5337PA3373
PAER208963 PA14_70470PA14_70440PA14_70450PA14_20440
OANT439375 OANT_2636OANT_0576OANT_2637OANT_2188
NSP103690 ALL1549ALR0106ALR0106
NOCE323261 NOC_1214NOC_1212NOC_1213
NMUL323848 NMUL_A0050NMUL_A0052NMUL_A0051
NMEN374833 NMCC_1569NMCC_1571NMCC_1570NMCC_1571
NMEN272831 NMC1577NMC1579NMC1578NMC1579
NMEN122587 NMA1917NMA1919NMA1918NMA1919
NMEN122586 NMB_1659NMB_1661NMB_1660NMB_1661
NGON242231 NGO1308NGO1310NGO1309NGO1310
NEUT335283 NEUT_1601NEUT_0614NEUT_0613
NEUR228410 NE0368NE2254NE2255
NARO279238 SARO_2533SARO_1003SARO_0141
MXAN246197 MXAN_3204MXAN_4705MXAN_4890
MSUC221988 MS1736MS1738MS1737MS1738
MSP409 M446_0031M446_3193M446_0030M446_2907
MSP400668 MMWYL1_4386MMWYL1_4384MMWYL1_4385MMWYL1_4384
MSP266779 MESO_1763MESO_0945MESO_3660
MPET420662 MPE_A2721MPE_A2715MPE_A2716MPE_B0648
MMAG342108 AMB2253AMB0748AMB2252
MLOT266835 MLR7857MLR7753MLL9141
MFLA265072 MFLA_0050MFLA_0048MFLA_0049MFLA_0048
MEXT419610 MEXT_3196MEXT_2000MEXT_3197
MCAP243233 MCA_2023MCA_2975MCA_2022
MAQU351348 MAQU_0636MAQU_0634MAQU_0635MAQU_4044
LPNE400673 LPC_1492LPC_1494LPC_1493
LPNE297246 LPP1990LPP1992LPP1991LPP1992
LPNE297245 LPL1985LPL1987LPL1986LPL1987
LCHO395495 LCHO_0731LCHO_0729LCHO_0730
KPNE272620 GKPORF_B3359GKPORF_B3357GKPORF_B3358GKPORF_B3852
JSP375286 MMA_1326MMA_1328MMA_1327MMA_0151
JSP290400 JANN_0514JANN_2440JANN_0513JANN_2855
ILOI283942 IL2380IL2382IL2381
HSOM228400 HSM_0548HSM_0546HSM_0547
HSOM205914 HS_1455HS_1457HS_1456
HMOD498761 HM1_1843HM1_2127HM1_2127
HINF71421 HI_1741HI_1743HI_1742HI_1743
HINF374930 CGSHIEE_03330CGSHIEE_03320CGSHIEE_03325CGSHIEE_03320
HINF281310 NTHI2052NTHI2054NTHI2053NTHI2054
HHAL349124 HHAL_0969HHAL_0976HHAL_0970
HDUC233412 HD_1924HD_1830HD_1923
HCHE349521 HCH_06313HCH_06315HCH_06314HCH_06315
HARS204773 HEAR2132HEAR2130HEAR2131HEAR2130
GURA351605 GURA_3160GURA_3162GURA_3161
GSUL243231 GSU_2236GSU_2238GSU_2237
GMET269799 GMET_2325GMET_2327GMET_2326
FTUL458234 FTA_1501FTA_1478FTA_1617
FTUL418136 FTW_0605FTW_0628FTW_1540
FTUL401614 FTN_1198FTN_0691FTN_0613
FTUL393115 FTF0808FTF1470CFTF0703
FTUL393011 FTH_1376FTH_1353FTH_1483
FTUL351581 FTL_1413FTL_1391FTL_1533
FRANT SPOTGMKRPOZ
FPHI484022 FPHI_1489FPHI_1850FPHI_0228
ESP42895 ENT638_0089ENT638_0091ENT638_0090ENT638_0298
EFER585054 EFER_3942EFER_3940EFER_3941EFER_3940
ECOO157 SPOTGMKRPOZPHNN
ECOL83334 ECS4525ECS4523ECS4524ECS5077
ECOL585397 ECED1_4334ECED1_4332ECED1_4333ECED1_4829
ECOL585057 ECIAI39_4172ECIAI39_4170ECIAI39_4171ECIAI39_4518
ECOL585056 ECUMN_4166ECUMN_4164ECUMN_4165ECUMN_4626
ECOL585055 EC55989_4116EC55989_4114EC55989_4115EC55989_4585
ECOL585035 ECS88_4065ECS88_4063ECS88_4064ECS88_4595
ECOL585034 ECIAI1_3822ECIAI1_3820ECIAI1_3821ECIAI1_4324
ECOL481805 ECOLC_0061ECOLC_0063ECOLC_0062ECOLC_3932
ECOL469008 ECBD_0075ECBD_0077ECBD_0076ECBD_3936
ECOL439855 ECSMS35_3985ECSMS35_3983ECSMS35_3984ECSMS35_4560
ECOL413997 ECB_03507ECB_03505ECB_03506ECB_03966
ECOL409438 ECSE_3932ECSE_3930ECSE_3931ECSE_4393
ECOL405955 APECO1_2811APECO1_2813APECO1_2812APECO1_2356
ECOL364106 UTI89_C4195UTI89_C4193UTI89_C4194UTI89_C4689
ECOL362663 ECP_3748ECP_3746ECP_3747ECP_4337
ECOL331111 ECE24377A_4153ECE24377A_4151ECE24377A_4152ECE24377A_4648
ECOL316407 ECK3640:JW3625:B3650ECK3638:JW3623:B3648ECK3639:JW3624:B3649ECK4087:JW4055:B4094
ECOL199310 C4475C4473C4474C4473
ECAR218491 ECA0038ECA0040ECA0039ECA0497
DRED349161 DRED_0733DRED_1700DRED_1700
DOLE96561 DOLE_2057DOLE_1910DOLE_1910
DNOD246195 DNO_0645DNO_1021DNO_0645
DHAF138119 DSY2451DSY2729DSY2729
DDES207559 DDE_1569DDE_0247DDE_3336
DARO159087 DARO_3843DARO_3845DARO_3844DARO_3845
CVIO243365 CV_3768CV_3770CV_3769CV_1849
CVES412965 COSY_0471COSY_0513COSY_0376COSY_0513
CSP501479 CSE45_0276CSE45_1806CSE45_0275CSE45_2447
CSAL290398 CSAL_3235CSAL_3233CSAL_3234CSAL_3233
CRUT413404 RMAG_0513RMAG_0559RMAG_0405
CPSY167879 CPS_4973CPS_4971CPS_4972CPS_4971
CPER289380 CPR_1904CPR_1719CPR_1718
CPER195103 CPF_2193CPF_2001CPF_2000
CPER195102 CPE1938CPE1748CPE1747
CJAP155077 CJA_3571CJA_3569CJA_3570
CBUR434922 COXBU7E912_1778COXBU7E912_1780COXBU7E912_1779
CBUR360115 COXBURSA331_A0409COXBURSA331_A0407COXBURSA331_A0408
CBUR227377 CBU_0303CBU_0301CBU_0302
CBOT508765 CLL_A1031CLL_A1211CLL_A1211
CBEI290402 CBEI_1540CBEI_1141CBEI_1142
CACE272562 CAC2274CAC1718CAC1719
BVIE269482 BCEP1808_0918BCEP1808_0916BCEP1808_0917BCEP1808_0916
BTHA271848 BTH_I1588BTH_I1586BTH_I1587BTH_I1586
BSUI470137 BSUIS_A0490BSUIS_A0679BSUIS_A1148
BSUI204722 BR_0464BR_0651BR_1099
BSP376 BRADO4468BRADO3317BRADO4469BRADO5349
BSP36773 BCEP18194_A4109BCEP18194_A4107BCEP18194_A4108BCEP18194_A4107
BPSE320373 BURPS668_2947BURPS668_2949BURPS668_2948BURPS668_3315
BPSE320372 BURPS1710B_A3304BURPS1710B_A3306BURPS1710B_A3305BURPS1710B_A3634
BPSE272560 BPSL2561BPSL2563BPSL2562BPSL2860
BPET94624 BPET2246BPET2248BPET2247BPET2248
BPER257313 BP1576BP1578BP1577BP1578
BPAR257311 BPP3007BPP3005BPP3006BPP3005
BOVI236 GBOORF0493GBOORF0676GBOORF1102
BMEL359391 BAB1_0489BAB1_0671BAB1_1123
BMEL224914 BMEI1469BMEI1297BMEI0882
BMAL320389 BMA10247_1962BMA10247_1964BMA10247_1963BMA10247_2583
BMAL320388 BMASAVP1_A0817BMASAVP1_A0815BMASAVP1_A0816BMASAVP1_A0313
BMAL243160 BMA_2094BMA_2096BMA_2095BMA_2397
BJAP224911 BLL5065BLR4088BLL5066BLR1228
BCEN331272 BCEN2424_1001BCEN2424_0999BCEN2424_1000BCEN2424_0999
BCEN331271 BCEN_0522BCEN_0520BCEN_0521BCEN_0520
BCAN483179 BCAN_A0469BCAN_A0664BCAN_A1119
BBRO257310 BB2973BB2971BB2972BB2971
BAMB398577 BAMMC406_0873BAMMC406_0871BAMMC406_0872BAMMC406_0871
BAMB339670 BAMB_0861BAMB_0859BAMB_0860BAMB_0859
BABO262698 BRUAB1_0486BRUAB1_0668BRUAB1_1105
AVAR240292 AVA_4989AVA_1475AVA_1475
ASP76114 EBA3497EBA3494EBA3495EBA3494
ASP62977 ACIAD3324ACIAD3325ACIAD3324
ASP62928 AZO3951AZO3953AZO3952AZO3953
ASP232721 AJS_0949AJS_0947AJS_0948AJS_0947
ASAL382245 ASA_0034ASA_0036ASA_0035ASA_0036
APLE434271 APJL_1861APJL_0264APJL_1862APJL_0264
APLE416269 APL_1825APL_0256APL_1826APL_0256
AHYD196024 AHA_0039AHA_0041AHA_0040
AFER243159 AFE_2473AFE_2475AFE_2474AFE_0812
AEHR187272 MLG_2442MLG_2444MLG_2443MLG_2444
ADEH290397 ADEH_2550ADEH_2606ADEH_3590
ACRY349163 ACRY_0531ACRY_1447ACRY_0530ACRY_2919
ACAU438753 AZC_2000AZC_4318AZC_1253AZC_3400
ABOR393595 ABO_0176ABO_0178ABO_0177
ABAU360910 BAV1957BAV1955BAV1956BAV1955
AAVE397945 AAVE_3585AAVE_3583AAVE_3584AAVE_3583


Organism features enriched in list (features available for 244 out of the 258 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00261492792
Arrangment:Pairs 0.008433057112
Disease:Bubonic_plague 0.005183766
Disease:Dysentery 0.005183766
Disease:Gastroenteritis 0.00872351013
Endospores:No 3.456e-1840211
Endospores:Yes 0.00119401253
GC_Content_Range4:0-40 4.570e-2532213
GC_Content_Range4:40-60 1.859e-9128224
GC_Content_Range4:60-100 3.093e-684145
GC_Content_Range7:0-30 1.157e-6547
GC_Content_Range7:30-40 1.806e-1627166
GC_Content_Range7:50-60 2.441e-1277107
GC_Content_Range7:60-70 1.463e-782134
Genome_Size_Range5:0-2 5.308e-2217155
Genome_Size_Range5:2-4 0.004072669197
Genome_Size_Range5:4-6 6.507e-19126184
Genome_Size_Range5:6-10 0.00010153247
Genome_Size_Range9:0-1 5.878e-6127
Genome_Size_Range9:1-2 7.282e-1616128
Genome_Size_Range9:2-3 0.000512035120
Genome_Size_Range9:4-5 5.289e-86496
Genome_Size_Range9:5-6 3.002e-96288
Genome_Size_Range9:6-8 7.230e-62938
Gram_Stain:Gram_Neg 1.570e-37212333
Gram_Stain:Gram_Pos 8.093e-2711150
Habitat:Multiple 0.000071695178
Habitat:Specialized 0.00292181353
Motility:No 5.955e-934151
Motility:Yes 2.507e-8144267
Optimal_temp.:- 0.0074230120257
Optimal_temp.:25-30 1.213e-61819
Optimal_temp.:35-37 9.992e-61313
Oxygen_Req:Anaerobic 4.367e-623102
Oxygen_Req:Facultative 0.0001545104201
Pathogenic_in:Animal 0.00503833766
Shape:Coccobacillus 0.00006041111
Shape:Coccus 2.154e-71482
Shape:Rod 1.320e-17194347
Shape:Sphere 0.0026504219
Shape:Spiral 0.0000852434
Temp._range:Hyperthermophilic 0.0000492123
Temp._range:Mesophilic 0.0083477208473
Temp._range:Psychrophilic 0.004668189
Temp._range:Thermophilic 0.0084696835



Back to top


ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 214
Effective number of orgs (counting one per cluster within 468 clusters): 179

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WSUC273121 ncbi Wolinella succinogenes DSM 17401
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TSP28240 Thermotoga sp.1
TROS309801 ncbi Thermomicrobium roseum DSM 51591
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO1
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 70
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSOL273057 ncbi Sulfolobus solfataricus P20
SRUB309807 ncbi Salinibacter ruber DSM 138550
SMAR399550 ncbi Staphylothermus marinus F10
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SCO ncbi Streptomyces coelicolor A3(2)1
SARE391037 ncbi Salinispora arenicola CNS-2051
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RSP357808 ncbi Roseiflexus sp. RS-11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RRIC452659 ncbi Rickettsia rickettsii Iowa1
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith1
RMAS416276 ncbi Rickettsia massiliae MTU51
RFEL315456 ncbi Rickettsia felis URRWXCal21
RCON272944 ncbi Rickettsia conorii Malish 71
RCAS383372 ncbi Roseiflexus castenholzii DSM 139411
RCAN293613 ncbi Rickettsia canadensis McKiel1
RALB246199 Ruminococcus albus 81
RAKA293614 ncbi Rickettsia akari Hartford1
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP117 Pirellula sp.1
PRUM264731 ncbi Prevotella ruminicola 230
PMOB403833 ncbi Petrotoga mobilis SJ951
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong1
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP35761 Nocardioides sp.1
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NFAR247156 ncbi Nocardia farcinica IFM 101521
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390731
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237791
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GFOR411154 ncbi Gramella forsetii KT08030
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DRAD243230 ncbi Deinococcus radiodurans R11
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5551
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4111
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFET360106 ncbi Campylobacter fetus fetus 82-401
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CCUR360105 ncbi Campylobacter curvus 525.921
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBLO203907 ncbi Candidatus Blochmannia floridanus1
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4001
BWEI315730 ncbi Bacillus weihenstephanensis KBAB41
BTUR314724 ncbi Borrelia turicatae 91E1350
BTHU412694 ncbi Bacillus thuringiensis Al Hakam1
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-271
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCLA66692 ncbi Bacillus clausii KSM-K161
BCER572264 ncbi Bacillus cereus 03BB1021
BCER405917 Bacillus cereus W1
BCER288681 ncbi Bacillus cereus E33L1
BCER226900 ncbi Bacillus cereus ATCC 145791
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BANT568206 ncbi Bacillus anthracis CDC 6841
BANT261594 ncbi Bacillus anthracis Ames Ancestor1
BANT260799 ncbi Bacillus anthracis Sterne1
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APHA212042 ncbi Anaplasma phagocytophilum HZ1
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG10
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
ABUT367737 ncbi Arcobacter butzleri RM40180
AAUR290340 ncbi Arthrobacter aurescens TC11
AAEO224324 ncbi Aquifex aeolicus VF51


Names of the homologs of the genes in the group in each of these orgs
  EG10966   EG10965   EG10899   EG10723   
WSUC273121 WS0188
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TSP28240 TRQ2_1145
TROS309801 TRD_1711
TPET390874 TPET_0985
TPEN368408
TPAL243276
TMAR243274
TLET416591 TLET_1628
TKOD69014
TDEN326298
TDEN243275
TACI273075
STRO369723 STROP_1815
STOK273063
SSP387093 SUN_2210
SSOL273057
SRUB309807
SMAR399550
SERY405948 SACE_2028
SCO SCO1479
SARE391037 SARE_1805
SACI330779
RSP357808 ROSERS_4122
RSAL288705 RSAL33209_1995
RRIC452659 RRIOWA_1399
RRIC392021 A1G_06535
RMAS416276 RMA_1210
RFEL315456 RF_1229
RCON272944 RC1194
RCAS383372 RCAS_1219
RCAN293613 A1E_04920
RALB246199 GRAORF_1839
RAKA293614 A1C_05985
PTOR263820
PSP117 RB7090
PRUM264731
PMOB403833 PMOB_0100
PMAR74547 PMT2111
PMAR167542 P9515ORF_0565
PLUT319225
PISL384616
PINT246198
PHOR70601
PGIN242619
PFUR186497
PDIS435591 BDI_0156
PAST100379
PARS340102
PAER178306
PACN267747 PPA1166
PABY272844
OTSU357244 OTBS_0788
NSP387092
NSP35761 NOCA_2392
NSEN222891 NSE_0726
NPHA348780
NFAR247156 NFA36840
MVAN350058 MVAN_2587
MTUB419947 MRA_2612
MTUB336982 TBFG_12603
MTHE349307
MTHE264732 MOTH_1680
MTHE187420
MTBRV RV2583C
MTBCDC MT2660
MSYN262723
MSTA339860
MSP189918 MKMS_2327
MSP164757 MJLS_2319
MSP164756 MMCS_2280
MSME246196 MSMEG_2965
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631 ML0491
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054 MFLV_3812
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBOV410289 BCG_2606C
MBOV233413 MB2614C
MBAR269797
MAVI243243 MAV_3464
MART243272
MAEO419665
MACE188937
MABS561007 MAB_2876C
LXYL281090 LXX10830
LINT363253 LI0170
LINT267671 LIC_11012
LINT189518 LA3084
LHEL405566 LHV_1011
LBRE387344 LVIS_0728
LBIF456481
LBIF355278
KRAD266940 KRAD_3048
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HMUK485914
HMAR272569
HHEP235279
HBUT415426
HAUR316274 HAUR_4475
HACI382638
GFOR411154
FSUC59374 FSU0818
FSP1855
FSP106370
FJOH376686
FALN326424
ERUM302409 ERGA_CDS_02990
ERUM254945 ERWE_CDS_03050
DSP255470 CBDBA5
DSP216389 DEHABAV1_0005
DRAD243230 DR_2289
DGEO319795
CTRA471473
CTRA471472
CTEP194439
CSUL444179
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809 CPHY_0548
CMUR243161
CMIC31964 CMS0723
CMET456442
CMAQ397948
CKOR374847
CKLU431943 CKL_3131
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537 JK1048
CHUT269798
CHOM360107 CHAB381_1251
CGLU196627 CG1861
CFET360106 CFF8240_1436
CFEL264202
CEFF196164 CE1767
CDIP257309 DIP1368
CCUR360105 CCV52592_1256
CCHL340177
CCAV227941
CBLO203907 BFL616
CABO218497
BXEN266265 BXE_B2176
BWEI315730 BCERKBAB4_4254
BTUR314724
BTHU412694 BALH_3988
BTHU281309 BT9727_4140
BTHE226186
BLON206672 BL1439
BHER314723
BGAR290434
BFRA295405
BFRA272559
BCLA66692 ABC1570
BCER572264 BCA_4518
BCER405917 BCE_4491
BCER288681 BCE33L4151
BCER226900 BC_4401
BBUR224326
BAPH372461
BANT568206 BAMEG_4671
BANT261594 GBAA4637
BANT260799 BAS4302
BAFZ390236
AYEL322098
AURANTIMONAS
ASP1667 ARTH_2297
APHA212042 APH_0170
APER272557
ANAE240017
AMAR234826
ALAI441768 ACL_0304
AFUL224325
ACEL351607 ACEL_1338
ABUT367737
AAUR290340 AAUR_2293
AAEO224324 AQ_844


Organism features enriched in list (features available for 201 out of the 214 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00004981692
Arrangment:Pairs 3.352e-717112
Disease:Food_poisoning 0.008545279
Disease:Pharyngitis 0.000181988
Disease:bronchitis_and_pneumonitis 0.000181988
Endospores:No 1.268e-11110211
GC_Content_Range4:0-40 0.000487391213
GC_Content_Range4:40-60 0.009445566224
GC_Content_Range7:0-30 0.00284282547
GC_Content_Range7:50-60 0.000106321107
GC_Content_Range7:60-70 0.008754836134
Genome_Size_Range5:0-2 3.002e-1594155
Genome_Size_Range5:2-4 0.006539256197
Genome_Size_Range5:4-6 3.391e-640184
Genome_Size_Range9:0-1 3.659e-82327
Genome_Size_Range9:1-2 1.782e-871128
Genome_Size_Range9:3-4 0.00463571777
Genome_Size_Range9:4-5 0.00004501796
Gram_Stain:Gram_Neg 7.825e-885333
Habitat:Host-associated 0.009910682206
Habitat:Multiple 1.168e-637178
Habitat:Specialized 0.00010483153
Motility:No 0.001808066151
Motility:Yes 0.003396678267
Optimal_temp.:30-37 0.0042633118
Optimal_temp.:37 0.000509351106
Oxygen_Req:Anaerobic 5.719e-757102
Oxygen_Req:Facultative 1.630e-1134201
Salinity:Extreme_halophilic 0.007407167
Shape:Coccus 0.00330131882
Shape:Irregular_coccus 3.043e-71617
Shape:Rod 1.938e-791347
Shape:Sphere 7.854e-61619
Shape:Spiral 2.667e-72634
Temp._range:Hyperthermophilic 1.106e-82123
Temp._range:Mesophilic 0.0014185150473



Back to top


ORGANISMS ENRICHED FOR GROUP:




Back to top


ORGANISMS DEPLETED FOR GROUP:




Back to top


PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GLYCOCAT-PWY (glycogen degradation I)2462050.6875
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3002270.6702
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951750.6623
PWY-5918 (heme biosynthesis I)2722090.6331
NAGLIPASYN-PWY (lipid IVA biosynthesis)3482400.6292
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181820.6267
GLUTATHIONESYN-PWY (glutathione biosynthesis)3392360.6256
PWY-4041 (γ-glutamyl cycle)2792110.6256
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491430.6210
PWY-1269 (CMP-KDO biosynthesis I)3252290.6159
PWY-5913 (TCA cycle variation IV)3012180.6087
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2862110.6053
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2912130.6041
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251820.6026
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2962140.5966
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2902090.5808
TYRFUMCAT-PWY (tyrosine degradation I)1841570.5772
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831540.5596
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911570.5506
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911550.5364
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3292180.5337
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551860.5328
PWY-5386 (methylglyoxal degradation I)3052070.5260
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3982420.5236
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491770.4915
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491770.4915
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222450.4896
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761400.4858
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561280.4768
PWY-5028 (histidine degradation II)1301130.4745
PWY-5148 (acyl-CoA hydrolysis)2271640.4739
AST-PWY (arginine degradation II (AST pathway))1201070.4735
PLPSAL-PWY (pyridoxal 5'-phosphate salvage pathway)3742250.4665
GLUCONSUPER-PWY (D-gluconate degradation)2291630.4607
PWY-5340 (sulfate activation for sulfonation)3852280.4598
PWY-5669 (phosphatidylethanolamine biosynthesis I)4162380.4547
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3652190.4488
P344-PWY (acrylonitrile degradation)2101520.4483
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81790.4404
PWY-5188 (tetrapyrrole biosynthesis I)4392430.4372
CHOLINE-BETAINE-ANA-PWY (choline degradation I)1351110.4358
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96880.4354
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001910.4354
REDCITCYC (TCA cycle variation II)1741320.4354
PWY-5938 ((R)-acetoin biosynthesis I)3762210.4349
PWY0-501 (lipoate biosynthesis and incorporation I)3852240.4330
PWY0-862 (cis-dodecenoyl biosynthesis)3432080.4321
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))1381120.4304
PWY-3162 (tryptophan degradation V (side chain pathway))94860.4286
P601-PWY (D-camphor degradation)95860.4229
PWY-6389 ((S)-acetoin biosynthesis)3682160.4215
KDOSYN-PWY (KDO transfer to lipid IVA I)1801330.4203
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94850.4194
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)1791320.4168
PROSYN-PWY (proline biosynthesis I)4752510.4157
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112950.4126
PWY-6087 (4-chlorocatechol degradation)2231530.4123
SO4ASSIM-PWY (sulfate reduction I (assimilatory))3111920.4119
DAPLYSINESYN-PWY (lysine biosynthesis I)3422040.4084
GALACTARDEG-PWY (D-galactarate degradation I)1511160.4066
GALACTITOLCAT-PWY (galactitol degradation)73700.4029
GALACTCAT-PWY (D-galactonate degradation)104890.4014



Back to top


PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG10965   EG10899   EG10723   
EG109660.9997190.9999070.99931
EG109650.999870.999732
EG108990.999486
EG10723



Back to top


PAIRWISE BLAST SCORES:

  EG10966   EG10965   EG10899   EG10723   
EG109660.0f0---
EG10965-0.0f0--
EG10899--0.0f0-
EG10723-1.4e-5-0.0f0



Back to top


PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis) (degree of match pw to cand: 0.036, degree of match cand to pw: 0.500, average score: 0.550)
  Genes in pathway or complex:
             0.1475 0.0737 EG10449 (hisG) ATPPHOSRIBOSTRANS-MONOMER (HisG)
             0.3147 0.1172 EG10451 (hisI) HISTCYCLOPRATPPHOS (phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphatase)
             0.1205 0.0026 EG10444 (hisA) PRIBFAICARPISOM-MONOMER (N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase)
             0.1928 0.1655 EG10448 (hisF) CYCLASE-MONOMER (imidazole glycerol phosphate synthase, HisF subunit)
             0.1150 0.0925 EG10450 (hisH) GLUTAMIDOTRANS-MONOMER (imidazole glycerol phosphate synthase, HisH subunit)
             0.2320 0.0875 EG10445 (hisB) IMIDPHOSPHADEHYDHISTIDPHOSPHA-MONOMER (HisB)
             0.0484 0.0030 EG10446 (hisC) HISTPHOSTRANS-MONOMER (HisC)
             0.1263 0.0015 EG10447 (hisD) HISTDEHYD-MONOMER (HisD)
             0.5397 0.2871 EG10790 (purA) ADENYLOSUCCINATE-SYN-MONOMER (PurA)
             0.0402 0.0011 EG11314 (purB) ASL-MONOMER (5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole lyase [multifunctional])
             0.2002 0.1022 EG10032 (adk) ADENYL-KIN-MONOMER (adenylate kinase)
             0.1146 0.0910 EG10661 (nrdB) NRDB-MONOMER (NrdB)
             0.0677 0.0442 EG10660 (nrdA) NRDA-MONOMER (NrdA)
             0.6331 0.2623 EG11417 (nrdD) RIBONUCLEOSIDE-TRIP-REDUCT-MONOMER (ribonucleoside-triphosphate reductase)
             0.1715 0.0682 EG12381 (nrdF) NRDF-MONOMER (NrdF)
             0.2008 0.0941 EG20257 (nrdE) NRDE-MONOMER (NrdE)
             0.9323 0.8850 EG10100 (atpC) ATPC-MONOMER (ATP synthase, F1 complex, ε subunit)
             0.9430 0.9063 EG10105 (atpH) ATPH-MONOMER (ATP synthase, F1 complex, δ subunit)
             0.9516 0.9238 EG10098 (atpA) ATPA-MONOMER (ATP synthase, F1 complex, α subunit)
             0.9545 0.9129 EG10104 (atpG) ATPG-MONOMER (ATP synthase, F1 complex, γ subunit)
             0.9582 0.9267 EG10101 (atpD) ATPD-MONOMER (ATP synthase, F1 complex, β subunit)
             0.9889 0.9734 EG10102 (atpE) ATPE-MONOMER (ATP synthase, F0 complex, c subunit)
             0.9690 0.9452 EG10103 (atpF) ATPF-MONOMER (ATP synthase, F0 complex, b subunit)
             0.9579 0.9425 EG10099 (atpB) ATPB-MONOMER (ATP synthase, F0 complex, a subunit)
             0.3876 0.1988 EG10421 (guaB) IMP-DEHYDROG-MONOMER (GuaB)
             0.2112 0.0404 EG10420 (guaA) GMP-SYN-MONOMER (GMP synthetase)
   *in cand* 0.9998 0.9997 EG10965 (gmk) GUANYL-KIN-MONOMER (Gmk)
             0.2639 0.0931 EG10791 (purC) SAICARSYN-MONOMER (PurC)
             0.8048 0.7282 EG10795 (purH) AICARTRANSIMPCYCLO-CPLX (AICAR transformylase / IMP cyclohydrolase)
             0.5444 0.2887 EG10793 (purE) PURE-MONOMER (PurE)
             0.5021 0.3113 EG10796 (purK) PURK-MONOMER (N5-carboxyaminoimidazole ribonucleotide synthetase monomer)
             0.4120 0.0025 EG10794 (purF) PRPPAMIDOTRANS-MONOMER (PurF)
             0.9422 0.9245 EG10792 (purD) GLYCRIBONUCSYN-MONOMER (phosphoribosylamine-glycine ligase)
             0.3651 0.0859 EG10797 (purL) FGAMSYN-MONOMER (phosphoribosylformylglycinamide synthetase)
             0.4201 0.0471 EG10798 (purM) AIRS-MONOMER (PurM)
             0.0136 0.0007 EG11809 (purT) GARTRANSFORMYL2-MONOMER (phosphoribosylglycinamide formyltransferase 2)
             0.7232 0.5604 EG11539 (pyrH) UMPKI-MONOMER (PyrH)
             0.5438 0.3724 EG10810 (pyrG) CTPSYN-MONOMER (PyrG)
             0.4496 0.0537 EG10650 (ndk) NUCLEOSIDE-DIP-KIN-MONOMER (Ndk)
             0.5779 0.1633 EG10134 (carA) CARBPSYN-SMALL (CarA)
             0.6437 0.2105 EG10135 (carB) CARBPSYN-LARGE (CarB)
             0.9236 0.8947 EG10811 (pyrI) ASPCARBREG-MONOMER (aspartate carbamoyltransferase, PyrI subunit)
             0.9553 0.9115 EG10805 (pyrB) ASPCARBCAT-MONOMER (aspartate carbamoyltransferase, PyrB subunit)
             0.2680 0.0686 EG10806 (pyrC) DIHYDROOROT-MONOMER (PyrC)
             0.9971 0.9934 EG10808 (pyrE) OROPRIBTRANS-MONOMER (PyrE)
             0.3661 0.0008 EG10809 (pyrF) OROTPDECARB-MONOMER (PyrF)
             0.3160 0.0003 EG10807 (pyrD) DIHYDROOROTOX-MONOMER (dihydroorotate dehydrogenase)
             0.0217 0.0015 EG10774 (prs) PRPPSYN-MONOMER (ribose-phosphate diphosphokinase)
   *in cand* 0.9996 0.9993 EG10723 (phnN) EG10723-MONOMER (ribose 1,5-bisphosphokinase)
             0.6072 0.3526 EG10220 (deoB) PPENTOMUT-MONOMER (phosphopentomutase)
             0.4732 0.3464 G7401 (nrdH) G7401-MONOMER (glutaredoxin-like protein)
             0.0903 0.0324 EG10318 (fldA) OX-FLAVODOXIN1 (oxidized flavodoxin 1)
             0.2590 0.0868 EG12697 (fldB) OX-FLAVODOXIN2 (oxidized flavodoxin 2)
             0.9523 0.8836 EG11031 (trxA) OX-THIOREDOXIN-MONOMER (oxidized thioredoxin)
             0.7615 0.6205 EG11887 (trxC) OX-THIOREDOXIN2-MONOMER (oxidized thioredoxin 2)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9998 0.9995 EG10899 (rpoZ) EG10899-MONOMER (RNA polymerase, ω subunit)
   *in cand* 0.9997 0.9993 EG10966 (spoT) SPOT-MONOMER (guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase [multifunctional])
   This pathway has holes



Back to top


GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10899 EG10965 EG10966 (centered at EG10899)
EG10723 (centered at EG10723)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG10966   EG10965   EG10899   EG10723   
411/623416/623266/623225/623
AAEO224324:0:Tyes0---
AAUR290340:2:Tyes0---
AAVE397945:0:Tyes2010
ABAC204669:0:Tyes03630--
ABAU360910:0:Tyes2010
ABOR393595:0:Tyes021-
ACAU438753:0:Tyes758310602170
ACEL351607:0:Tyes0---
ACRY349163:8:Tyes191502403
ADEH290397:0:Tyes0601053-
AEHR187272:0:Tyes0212
AFER243159:0:Tyes1641164316420
AHYD196024:0:Tyes021-
ALAI441768:0:Tyes-0--
AMAR329726:9:Tyes02958--
AMET293826:0:Tyes0433--
AORE350688:0:Tyes2870--
APHA212042:0:Tyes-0--
APLE416269:0:Tyes1607016080
APLE434271:0:Tno1612016130
ASAL382245:5:Tyes0212
ASP1667:3:Tyes0---
ASP232721:2:Tyes2010
ASP62928:0:Tyes0212
ASP62977:0:Tyes-010
ASP76114:2:Tyes2010
AVAR240292:3:Tyes35230-0
BABO262698:1:Tno-0164580
BAMB339670:3:Tno2010
BAMB398577:3:Tno2010
BAMY326423:0:Tyes9190--
BANT260799:0:Tno0---
BANT261594:2:Tno0---
BANT568206:2:Tyes0---
BANT592021:2:Tno6100--
BAPH198804:0:Tyes-0-0
BBAC264462:0:Tyes1-0-
BBAC360095:0:Tyes-340-
BBRO257310:0:Tyes2010
BCAN483179:1:Tno-0189632
BCEN331271:2:Tno2010
BCEN331272:3:Tyes2010
BCER226900:1:Tyes0---
BCER288681:0:Tno0---
BCER315749:1:Tyes5880--
BCER405917:1:Tyes0---
BCER572264:1:Tno0---
BCIC186490:0:Tyes-01-
BCLA66692:0:Tyes0---
BHAL272558:0:Tyes01274--
BHEN283166:0:Tyes-350-
BJAP224911:0:Fyes3862287438630
BLIC279010:0:Tyes10680--
BLON206672:0:Tyes0---
BMAL243160:1:Tno021279
BMAL320388:1:Tno4984964970
BMAL320389:1:Tyes021612
BMEL224914:1:Tno-6014280
BMEL359391:1:Tno-0164567
BOVI236:1:Tyes-0152536
BPAR257311:0:Tno2010
BPER257313:0:Tyes0212
BPET94624:0:Tyes0212
BPSE272560:1:Tyes021302
BPSE320372:1:Tno021326
BPSE320373:1:Tno021356
BPUM315750:0:Tyes9190--
BQUI283165:0:Tyes-350-
BSP107806:2:Tyes-0-0
BSP36773:2:Tyes2010
BSP376:0:Tyes1099011001925
BSUB:0:Tyes12330--
BSUI204722:1:Tyes-0177616
BSUI470137:1:Tno-0181639
BTHA271848:1:Tno2010
BTHU281309:1:Tno0---
BTHU412694:1:Tno0---
BTRI382640:1:Tyes-360-
BVIE269482:7:Tyes2010
BWEI315730:4:Tyes0---
BXEN266265:1:Tyes---0
CACE272562:1:Tyes54701-
CAULO:0:Tyes-1300-
CBEI290402:0:Tyes39301-
CBLO203907:0:Tyes-0--
CBLO291272:0:Tno-01-
CBOT36826:1:Tno5480--
CBOT441770:0:Tyes6900--
CBOT441771:0:Tno5790--
CBOT441772:1:Tno5300--
CBOT498213:1:Tno6380--
CBOT508765:1:Tyes0179-179
CBOT515621:2:Tyes5660--
CBOT536232:0:Tno6260--
CBUR227377:1:Tyes201-
CBUR360115:1:Tno201-
CBUR434922:2:Tno021-
CCON360104:2:Tyes-0-0
CCUR360105:0:Tyes---0
CDES477974:0:Tyes0707--
CDIF272563:1:Tyes1530--
CDIP257309:0:Tyes0---
CEFF196164:0:Fyes0---
CFET360106:0:Tyes---0
CGLU196627:0:Tyes0---
CHOM360107:1:Tyes---0
CHYD246194:0:Tyes7160--
CJAP155077:0:Tyes201-
CJEI306537:0:Tyes0---
CKLU431943:1:Tyes0---
CMIC31964:2:Tyes0---
CMIC443906:2:Tyes1470--0
CNOV386415:0:Tyes0405--
CPEL335992:0:Tyes-0490-
CPER195102:1:Tyes19610-
CPER195103:0:Tno18410-
CPER289380:3:Tyes18110-
CPHY357809:0:Tyes0---
CPSY167879:0:Tyes2010
CRUT413404:0:Tyes1021460-
CSAL290398:0:Tyes2010
CSP501479:8:Fyes1150802143
CSP78:2:Tyes-7970-
CTET212717:0:Tyes9020--
CVES412965:0:Tyes921340134
CVIO243365:0:Tyes1965196719660
DARO159087:0:Tyes0212
DDES207559:0:Tyes1337-03139
DETH243164:0:Tyes0--30
DHAF138119:0:Tyes0278-278
DNOD246195:0:Tyes-03570
DOLE96561:0:Tyes1500-0
DPSY177439:2:Tyes-14080-
DRAD243230:3:Tyes---0
DRED349161:0:Tyes0968-968
DSHI398580:5:Tyes-13590-
DSP216389:0:Tyes0---
DSP255470:0:Tno0---
DVUL882:1:Tyes0-1155-
ECAN269484:0:Tyes-4040-
ECAR218491:0:Tyes021466
ECHA205920:0:Tyes-0451-
ECOL199310:0:Tno2010
ECOL316407:0:Tno021461
ECOL331111:6:Tno201468
ECOL362663:0:Tno201579
ECOL364106:1:Tno201487
ECOL405955:2:Tyes201478
ECOL409438:6:Tyes201491
ECOL413997:0:Tno201481
ECOL439855:4:Tno201542
ECOL469008:0:Tno0213848
ECOL481805:0:Tno0213880
ECOL585034:0:Tno201475
ECOL585035:0:Tno201500
ECOL585055:0:Tno201466
ECOL585056:2:Tno201463
ECOL585057:0:Tno201361
ECOL585397:0:Tno201496
ECOL83334:0:Tno201584
ECOLI:0:Tno201454
ECOO157:0:Tno201531
EFAE226185:3:Tyes01087--
EFER585054:1:Tyes2010
ELIT314225:0:Tyes-0282-
ERUM254945:0:Tyes--0-
ERUM302409:0:Tno--0-
ESP42895:1:Tyes021214
FMAG334413:1:Tyes1560--
FNOD381764:0:Tyes-0-0
FNUC190304:0:Tyes15780--
FPHI484022:1:Tyes131316780-
FRANT:0:Tno1037230-
FSUC59374:0:Tyes-0--
FTUL351581:0:Tno210136-
FTUL393011:0:Tno200109-
FTUL393115:0:Tyes1037070-
FTUL401614:0:Tyes580770-
FTUL418136:0:Tno022756-
FTUL458234:0:Tno210123-
GBET391165:0:Tyes-12170-
GKAU235909:1:Tyes14310--
GMET269799:1:Tyes021-
GOXY290633:5:Tyes8090--
GSUL243231:0:Tyes021-
GTHE420246:1:Tyes14580--
GURA351605:0:Tyes021-
GVIO251221:0:Tyes1140--0
HARS204773:0:Tyes2010
HAUR316274:2:Tyes0---
HCHE349521:0:Tyes0212
HDUC233412:0:Tyes78077-
HHAL349124:0:Tyes071-
HINF281310:0:Tyes0212
HINF374930:0:Tyes2010
HINF71421:0:Tno0212
HMOD498761:0:Tyes0284-284
HNEP81032:0:Tyes-12570-
HSOM205914:1:Tyes021-
HSOM228400:0:Tno201-
ILOI283942:0:Tyes021-
JSP290400:1:Tyes1194302367
JSP375286:0:Tyes1199120112000
KPNE272620:2:Tyes201467
KRAD266940:2:Fyes0---
LACI272621:0:Tyes0365--
LBOR355276:1:Tyes3750--
LBOR355277:1:Tno0683--
LBRE387344:2:Tyes0---
LCAS321967:1:Tyes090--
LCHO395495:0:Tyes201-
LDEL321956:0:Tyes0419--
LDEL390333:0:Tyes0360--
LGAS324831:0:Tyes970--
LHEL405566:0:Tyes0---
LINN272626:1:Tno0409--
LINT189518:1:Tyes0---
LINT267671:1:Tno0---
LINT363253:3:Tyes0---
LJOH257314:0:Tyes0153--
LLAC272622:5:Tyes01947--
LLAC272623:0:Tyes01793--
LMES203120:1:Tyes0340--
LMON169963:0:Tno0332--
LMON265669:0:Tyes0308--
LPLA220668:0:Tyes3160--
LPNE272624:0:Tno01--
LPNE297245:1:Fno0212
LPNE297246:1:Fyes0212
LPNE400673:0:Tno021-
LREU557436:0:Tyes0461--
LSAK314315:0:Tyes520--
LSPH444177:1:Tyes22940--
LWEL386043:0:Tyes0310--
LXYL281090:0:Tyes0---
MABS561007:1:Tyes0---
MAER449447:0:Tyes41690--
MAQU351348:0:Tyes---0
MAQU351348:2:Tyes201-
MAVI243243:0:Tyes0---
MBOV233413:0:Tno0---
MBOV410289:0:Tno0---
MCAP243233:0:Tyes19110-
MEXT419610:0:Tyes119501196-
MFLA265072:0:Tyes2010
MGIL350054:3:Tyes0---
MLEP272631:0:Tyes0---
MLOT266835:1:Tyes---0
MLOT266835:2:Tyes-840-
MMAG342108:0:Tyes150501504-
MMAR394221:0:Tyes-0355-
MPET420662:0:Tyes---0
MPET420662:1:Tyes601-
MSME246196:0:Tyes0---
MSP164756:1:Tno0---
MSP164757:0:Tno0---
MSP189918:2:Tyes0---
MSP266779:3:Tyes-83202732
MSP400668:0:Tyes2010
MSP409:2:Tyes1300802728
MSUC221988:0:Tyes0212
MTBCDC:0:Tno0---
MTBRV:0:Tno0---
MTHE264732:0:Tyes0---
MTUB336982:0:Tno0---
MTUB419947:0:Tyes0---
MVAN350058:0:Tyes0---
MXAN246197:0:Tyes014501628-
NARO279238:0:Tyes24238710-
NEUR228410:0:Tyes019191920-
NEUT335283:2:Tyes97610-
NFAR247156:2:Tyes0---
NGON242231:0:Tyes0212
NHAM323097:2:Tyes-930-
NMEN122586:0:Tno0212
NMEN122587:0:Tyes0212
NMEN272831:0:Tno0212
NMEN374833:0:Tno0212
NMUL323848:3:Tyes021-
NOCE323261:1:Tyes201-
NSEN222891:0:Tyes-0--
NSP103690:6:Tyes14490-0
NSP35761:1:Tyes0---
NWIN323098:0:Tyes-0246-
OANT439375:5:Tyes2099021001643
OCAR504832:0:Tyes-5250-
OIHE221109:0:Tyes5280--
OTSU357244:0:Fyes-0--
PACN267747:0:Tyes0---
PAER208963:0:Tyes4090408840890
PAER208964:0:Tno1990198819890
PARC259536:0:Tyes-010
PATL342610:0:Tyes201-
PCAR338963:0:Tyes-01-
PCRY335284:1:Tyes-010
PDIS435591:0:Tyes---0
PENT384676:0:Tyes1500149414990
PFLU205922:0:Tyes1304130213030
PFLU216595:1:Tyes4054405240530
PFLU220664:0:Tyes201-
PHAL326442:1:Tyes2010
PING357804:0:Tyes0323932403295
PLUM243265:0:Fyes0212
PMAR146891:0:Tyes0314-314
PMAR167539:0:Tyes0260--
PMAR167540:0:Tyes0--287
PMAR167542:0:Tyes---0
PMAR167546:0:Tyes-0-0
PMAR167555:0:Tyes0265--
PMAR59920:0:Tno0250--
PMAR74546:0:Tyes0282-282
PMAR74547:0:Tyes0---
PMAR93060:0:Tyes0348-348
PMEN399739:0:Tyes1526152415250
PMOB403833:0:Tyes-0--
PMUL272843:1:Tyes0212
PNAP365044:8:Tyes0212
PPEN278197:0:Tyes2900--
PPRO298386:2:Tyes0212
PPUT160488:0:Tno8308248290
PPUT351746:0:Tyes3777377037760
PPUT76869:0:Tno1389138313880
PSP117:0:Tyes---0
PSP296591:2:Tyes0212
PSP312153:0:Tyes0212
PSP56811:2:Tyes-101
PSTU379731:0:Tyes0213646
PSYR205918:0:Tyes0212052
PSYR223283:2:Tyes0212473
PTHE370438:0:Tyes0756--
RAKA293614:0:Fyes-0--
RALB246199:0:Tyes-0--
RBEL336407:0:Tyes-0-0
RBEL391896:0:Fno-0-0
RCAN293613:0:Fyes-0--
RCAS383372:0:Tyes0---
RCON272944:0:Tno-0--
RDEN375451:4:Tyes112000969
RETL347834:5:Tyes-128412200
REUT264198:2:Tyes---0
REUT264198:3:Tyes021-
REUT381666:1:Tyes---0
REUT381666:2:Tyes201-
RFEL315456:2:Tyes-0--
RFER338969:1:Tyes3001299930000
RLEG216596:6:Tyes-141013520
RMAS416276:1:Tyes-0--
RMET266264:2:Tyes8886870
RPAL258594:0:Tyes-238820100
RPAL316055:0:Tyes-270076
RPAL316056:0:Tyes1359102613580
RPAL316057:0:Tyes-33201198
RPAL316058:0:Tyes-01361630
RPOM246200:1:Tyes2671144326720
RPRO272947:0:Tyes-0-0
RRIC392021:0:Fno-0--
RRIC452659:0:Tyes-0--
RRUB269796:1:Tyes142201423-
RSAL288705:0:Tyes0---
RSOL267608:1:Tyes021-
RSP101510:3:Fyes0--253
RSP357808:0:Tyes0---
RSPH272943:4:Tyes112780-
RSPH349101:2:Tno112690-
RSPH349102:5:Tyes145901460-
RTYP257363:0:Tno-0-0
RXYL266117:0:Tyes0134-134
SACI56780:0:Tyes1359-10
SAGA205921:0:Tno14640--
SAGA208435:0:Tno15950--
SAGA211110:0:Tyes16160--
SALA317655:1:Tyes-15690-
SARE391037:0:Tyes0---
SAUR158878:1:Tno4250--
SAUR158879:1:Tno4220--
SAUR196620:0:Tno4920--
SAUR273036:0:Tno4180--
SAUR282458:0:Tno5120--
SAUR282459:0:Tno4250--
SAUR359786:1:Tno4150--
SAUR359787:1:Tno4240--
SAUR367830:3:Tno4860--
SAUR418127:0:Tyes4220--
SAUR426430:0:Tno4160--
SAUR93061:0:Fno5340--
SAUR93062:1:Tno4560--
SAVE227882:1:Fyes031--
SBAL399599:3:Tyes0212
SBAL402882:1:Tno0212
SBOY300268:1:Tyes021364
SCO:2:Fyes-0--
SDEG203122:0:Tyes2010
SDEN318161:0:Tyes2010
SDYS300267:1:Tyes20135
SELO269084:0:Tyes0181-181
SENT209261:0:Tno0212
SENT220341:0:Tno0212
SENT295319:0:Tno2010
SENT321314:2:Tno2010
SENT454169:2:Tno2010
SEPI176279:1:Tyes4130--
SEPI176280:0:Tno4300--
SERY405948:0:Tyes0---
SFLE198214:0:Tyes2010
SFLE373384:0:Tno0212
SFUM335543:0:Tyes349185501855
SGLO343509:3:Tyes201-
SGOR29390:0:Tyes11950--
SHAE279808:0:Tyes0418--
SHAL458817:0:Tyes0212
SHIGELLA:0:Tno0212
SLAC55218:1:Fyes19570-
SLOI323850:0:Tyes2010
SMED366394:2:Tyes---0
SMED366394:3:Tyes-830-
SMEL266834:1:Tyes---0
SMEL266834:2:Tyes-830-
SMUT210007:0:Tyes14540--
SONE211586:1:Tyes0212
SPEA398579:0:Tno2010
SPNE1313:0:Tyes095--
SPNE170187:0:Tyes092--
SPNE171101:0:Tno095--
SPNE487213:0:Tno088--
SPNE487214:0:Tno092--
SPNE488221:0:Tno090--
SPRO399741:1:Tyes4417441544160
SPYO160490:0:Tno2720--
SPYO186103:0:Tno3300--
SPYO193567:0:Tno12350--
SPYO198466:0:Tno3260--
SPYO286636:0:Tno3150--
SPYO293653:0:Tno3500--
SPYO319701:0:Tyes2970--
SPYO370551:0:Tno3580--
SPYO370552:0:Tno3030--
SPYO370553:0:Tno3520--
SPYO370554:0:Tyes3350--
SSAP342451:2:Tyes0437-437
SSED425104:0:Tyes0212
SSON300269:1:Tyes021480
SSP1131:0:Tyes18060--
SSP1148:0:Tyes14450-0
SSP292414:1:Tyes---0
SSP292414:2:Tyes132101322-
SSP321327:0:Tyes0720-720
SSP321332:0:Tyes14590-0
SSP387093:0:Tyes-0--
SSP644076:4:Fyes---0
SSP644076:6:Fyes--0-
SSP64471:0:Tyes5350--
SSP84588:0:Tyes5060--
SSP94122:1:Tyes2010
SSUI391295:0:Tyes16920--
SSUI391296:0:Tyes17090--
STHE264199:0:Tyes01174--
STHE292459:0:Tyes11150-0
STHE299768:0:Tno01209--
STHE322159:2:Tyes01040--
STRO369723:0:Tyes0---
STYP99287:1:Tyes2010
SWOL335541:0:Tyes0419--
TCRU317025:0:Tyes5650550
TDEN292415:0:Tyes0211851
TELO197221:0:Tyes5440-0
TERY203124:0:Tyes0161--
TFUS269800:0:Tyes1027--0
TLET416591:0:Tyes---0
TPET390874:0:Tno---0
TPSE340099:0:Tyes0295-295
TROS309801:1:Tyes0---
TSP1755:0:Tyes-0-0
TSP28240:0:Tyes---0
TTEN273068:0:Tyes0304-304
TTHE262724:1:Tyes1600--
TTHE300852:2:Tyes1570--
TTUR377629:0:Tyes0212
VCHO:0:Tyes2010
VCHO345073:1:Tno2010
VEIS391735:1:Tyes1252125012510
VFIS312309:2:Tyes021-
VPAR223926:1:Tyes0212
VVUL196600:2:Tyes021-
VVUL216895:1:Tno201-
WPIP80849:0:Tyes-0-0
WPIP955:0:Tyes-0-0
WSUC273121:0:Tyes-0--
XAUT78245:1:Tyes-182525360
XAXO190486:0:Tyes021-
XCAM190485:0:Tyes021-
XCAM314565:0:Tno021-
XCAM316273:0:Tno031-
XCAM487884:0:Tno201-
XFAS160492:2:Tno011681167-
XFAS183190:1:Tyes97110-
XFAS405440:0:Tno94110-
XORY291331:0:Tno403-
XORY342109:0:Tyes403-
XORY360094:0:Tno062-
YENT393305:1:Tyes021431
YPES187410:5:Tno201643
YPES214092:3:Tno0213278
YPES349746:2:Tno0213866
YPES360102:3:Tyes5435415420
YPES377628:2:Tno3247324532460
YPES386656:2:Tno6096076080
YPSE273123:2:Tno021499
YPSE349747:2:Tno0213487
ZMOB264203:0:Tyes03531677-



Back to top