CANDIDATE ID: 360

CANDIDATE ID: 360

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9963883e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    5.0000001e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6954 (nudG) (b1759)
   Products of gene:
     - G6954-MONOMER (pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase)
       Reactions:
        CTP + H2O  =  CMP + diphosphate + H+

- EG12313 (yacF) (b0102)
   Products of gene:
     - EG12313-MONOMER (conserved protein)

- EG10936 (secA) (b0098)
   Products of gene:
     - SECA (SecA)
     - SEC-SECRETION-CPLX (Sec Protein Secretion Complex)

- EG10626 (mutT) (b0099)
   Products of gene:
     - EG10626-MONOMER (dGTP pyrophosphohydrolase)
       Reactions:
        dGTP + H2O  =  dGMP + diphosphate + H+



Back to top


ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 272
Effective number of orgs (counting one per cluster within 468 clusters): 201

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A3
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110183
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103313
XFAS405440 ncbi Xylella fastidiosa M123
XFAS183190 ncbi Xylella fastidiosa Temecula13
XFAS160492 ncbi Xylella fastidiosa 9a5c3
XCAM487884 Xanthomonas campestris pv. paulliniae3
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-103
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80043
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339133
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3063
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VEIS391735 ncbi Verminephrobacter eiseniae EF01-24
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TTUR377629 ncbi Teredinibacter turnerae T79013
TFUS269800 ncbi Thermobifida fusca YX3
TERY203124 ncbi Trichodesmium erythraeum IMS1013
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252594
TDEN243275 ncbi Treponema denticola ATCC 354053
TCRU317025 ncbi Thiomicrospira crunogena XCL-23
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
STRO369723 ncbi Salinispora tropica CNB-4403
STHE292459 ncbi Symbiobacterium thermophilum IAM 148633
SSP94122 ncbi Shewanella sp. ANA-34
SSP84588 ncbi Synechococcus sp. WH 81023
SSP64471 ncbi Synechococcus sp. CC93113
SSP644076 Silicibacter sp. TrichCH4B3
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)3
SSP292414 ncbi Ruegeria sp. TM10403
SSP1131 Synechococcus sp. CC96053
SSON300269 ncbi Shigella sonnei Ss0464
SSED425104 ncbi Shewanella sediminis HAW-EB34
SPRO399741 ncbi Serratia proteamaculans 5684
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-14
SMEL266834 ncbi Sinorhizobium meliloti 10213
SMED366394 ncbi Sinorhizobium medicae WSM4193
SLOI323850 ncbi Shewanella loihica PV-44
SLAC55218 Ruegeria lacuscaerulensis3
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB3
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SELO269084 ncbi Synechococcus elongatus PCC 63013
SDYS300267 ncbi Shigella dysenteriae Sd1974
SDEN318161 ncbi Shewanella denitrificans OS2174
SDEG203122 ncbi Saccharophagus degradans 2-403
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
SAVE227882 ncbi Streptomyces avermitilis MA-46803
SALA317655 ncbi Sphingopyxis alaskensis RB22563
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170253
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170293
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.13
RSOL267608 ncbi Ralstonia solanacearum GMI10004
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111703
RPOM246200 ncbi Ruegeria pomeroyi DSS-33
RPAL316058 ncbi Rhodopseudomonas palustris HaA23
RPAL316057 ncbi Rhodopseudomonas palustris BisB53
RPAL316056 ncbi Rhodopseudomonas palustris BisB183
RPAL316055 ncbi Rhodopseudomonas palustris BisA533
RPAL258594 ncbi Rhodopseudomonas palustris CGA0093
RMET266264 ncbi Ralstonia metallidurans CH344
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38413
RFER338969 ncbi Rhodoferax ferrireducens T1184
REUT381666 ncbi Ralstonia eutropha H164
REUT264198 ncbi Ralstonia eutropha JMP1344
RETL347834 ncbi Rhizobium etli CFN 423
RDEN375451 ncbi Roseobacter denitrificans OCh 1143
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30003
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a3
PSTU379731 ncbi Pseudomonas stutzeri A15013
PSP56811 Psychrobacter sp.3
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-14
PSP296591 ncbi Polaromonas sp. JS6664
PRUM264731 ncbi Prevotella ruminicola 233
PPUT76869 ncbi Pseudomonas putida GB-13
PPUT351746 ncbi Pseudomonas putida F13
PPUT160488 ncbi Pseudomonas putida KT24403
PPRO298386 ncbi Photobacterium profundum SS94
PNAP365044 ncbi Polaromonas naphthalenivorans CJ24
PMUL272843 ncbi Pasteurella multocida multocida Pm703
PMEN399739 ncbi Pseudomonas mendocina ymp3
PMAR74547 ncbi Prochlorococcus marinus MIT 93133
PMAR59920 ncbi Prochlorococcus marinus NATL2A3
PMAR167555 ncbi Prochlorococcus marinus NATL1A3
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13753
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 374
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1253
PFLU220664 ncbi Pseudomonas fluorescens Pf-53
PFLU216595 ncbi Pseudomonas fluorescens SBW253
PFLU205922 ncbi Pseudomonas fluorescens Pf0-13
PENT384676 ncbi Pseudomonas entomophila L483
PCAR338963 ncbi Pelobacter carbinolicus DSM 23803
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PAER208964 ncbi Pseudomonas aeruginosa PAO13
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA143
OCAR504832 ncbi Oligotropha carboxidovorans OM53
OANT439375 ncbi Ochrobactrum anthropi ATCC 491883
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2553
NSP35761 Nocardioides sp.3
NOCE323261 ncbi Nitrosococcus oceani ATCC 197073
NMUL323848 ncbi Nitrosospira multiformis ATCC 251964
NMEN374833 ncbi Neisseria meningitidis 0534423
NMEN272831 ncbi Neisseria meningitidis FAM183
NMEN122587 ncbi Neisseria meningitidis Z24913
NMEN122586 ncbi Neisseria meningitidis MC583
NHAM323097 ncbi Nitrobacter hamburgensis X143
NGON242231 ncbi Neisseria gonorrhoeae FA 10903
NEUT335283 ncbi Nitrosomonas eutropha C914
NEUR228410 ncbi Nitrosomonas europaea ATCC 197184
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124443
MXAN246197 ncbi Myxococcus xanthus DK 16223
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E3
MSP409 Methylobacterium sp.3
MSP400668 ncbi Marinomonas sp. MWYL13
MSP266779 ncbi Chelativorans sp. BNC13
MPET420662 ncbi Methylibium petroleiphilum PM14
MMAR394221 ncbi Maricaulis maris MCS103
MMAG342108 ncbi Magnetospirillum magneticum AMB-13
MLOT266835 ncbi Mesorhizobium loti MAFF3030993
MFLA265072 ncbi Methylobacillus flagellatus KT4
MEXT419610 ncbi Methylobacterium extorquens PA13
MCAP243233 ncbi Methylococcus capsulatus Bath4
MAQU351348 ncbi Marinobacter aquaeolei VT83
MAER449447 ncbi Microcystis aeruginosa NIES-8433
LPNE400673 ncbi Legionella pneumophila Corby4
LPNE297246 ncbi Legionella pneumophila Paris4
LPNE297245 ncbi Legionella pneumophila Lens4
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-003
LCHO395495 ncbi Leptothrix cholodnii SP-64
LACI272621 ncbi Lactobacillus acidophilus NCFM3
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP375286 ncbi Janthinobacterium sp. Marseille4
JSP290400 ncbi Jannaschia sp. CCS13
ILOI283942 ncbi Idiomarina loihiensis L2TR4
HSOM228400 ncbi Haemophilus somnus 23363
HSOM205914 ncbi Haemophilus somnus 129PT3
HNEP81032 Hyphomonas neptunium3
HINF71421 ncbi Haemophilus influenzae Rd KW203
HINF281310 ncbi Haemophilus influenzae 86-028NP3
HHAL349124 ncbi Halorhodospira halophila SL14
HDUC233412 ncbi Haemophilus ducreyi 35000HP3
HCHE349521 ncbi Hahella chejuensis KCTC 23963
HARS204773 ncbi Herminiimonas arsenicoxydans4
GVIO251221 ncbi Gloeobacter violaceus PCC 74213
GSUL243231 ncbi Geobacter sulfurreducens PCA3
GOXY290633 ncbi Gluconobacter oxydans 621H3
GMET269799 ncbi Geobacter metallireducens GS-153
GBET391165 ncbi Granulibacter bethesdensis CGDNIH13
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250173
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
EFAE226185 ncbi Enterococcus faecalis V5833
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough3
DSHI398580 ncbi Dinoroseobacter shibae DFL 123
DRED349161 ncbi Desulfotomaculum reducens MI-13
DPSY177439 ncbi Desulfotalea psychrophila LSv543
DNOD246195 ncbi Dichelobacter nodosus VCS1703A4
DHAF138119 ncbi Desulfitobacterium hafniense Y513
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G203
DARO159087 ncbi Dechloromonas aromatica RCB4
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CTEP194439 ncbi Chlorobium tepidum TLS3
CSP78 Caulobacter sp.3
CSP501479 Citreicella sp. SE453
CSAL290398 ncbi Chromohalobacter salexigens DSM 30433
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)3
CPSY167879 ncbi Colwellia psychrerythraea 34H3
CPHY357809 ncbi Clostridium phytofermentans ISDg3
CPER289380 ncbi Clostridium perfringens SM1013
CPER195103 ncbi Clostridium perfringens ATCC 131243
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3823
CMIC31964 ncbi Clavibacter michiganensis sepedonicus3
CJAP155077 Cellvibrio japonicus3
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29013
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131293
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1114
CBUR360115 ncbi Coxiella burnetii RSA 3314
CBUR227377 ncbi Coxiella burnetii RSA 4934
CAULO ncbi Caulobacter crescentus CB153
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTRI382640 ncbi Bartonella tribocorum CIP 1054763
BTHA271848 ncbi Burkholderia thailandensis E2644
BSUI470137 ncbi Brucella suis ATCC 234453
BSUI204722 ncbi Brucella suis 13303
BSP376 Bradyrhizobium sp.3
BSP36773 Burkholderia sp.4
BQUI283165 ncbi Bartonella quintana Toulouse3
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BPET94624 Bordetella petrii4
BPER257313 ncbi Bordetella pertussis Tohama I4
BPAR257311 ncbi Bordetella parapertussis 128224
BOVI236 Brucella ovis3
BMEL359391 ncbi Brucella melitensis biovar Abortus 23083
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M3
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1103
BHEN283166 ncbi Bartonella henselae Houston-13
BFRA295405 ncbi Bacteroides fragilis YCH463
BFRA272559 ncbi Bacteroides fragilis NCTC 93433
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BCAN483179 ncbi Brucella canis ATCC 233653
BBRO257310 ncbi Bordetella bronchiseptica RB504
BBAC360095 ncbi Bartonella bacilliformis KC5833
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1003
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9413
AVAR240292 ncbi Anabaena variabilis ATCC 294133
ASP76114 ncbi Aromatoleum aromaticum EbN14
ASP62928 ncbi Azoarcus sp. BH724
ASP232721 ncbi Acidovorax sp. JS424
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
AMAR329726 ncbi Acaryochloris marina MBIC110173
AHYD196024 Aeromonas hydrophila dhakensis4
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232704
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C3
ACRY349163 ncbi Acidiphilium cryptum JF-53
ACAU438753 ncbi Azorhizobium caulinodans ORS 5713
ABOR393595 ncbi Alcanivorax borkumensis SK23
ABAU360910 ncbi Bordetella avium 197N4
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3453
AAVE397945 ncbi Acidovorax citrulli AAC00-14


Names of the homologs of the genes in the group in each of these orgs
  G6954   EG12313   EG10936   EG10626   
YPSE349747 YPSIP31758_1977YPSIP31758_3375YPSIP31758_3378YPSIP31758_3377
YPSE273123 YPTB2093YPTB0701YPTB0697YPTB0698
YPES386656 YPDSF_0967YPDSF_2924YPDSF_3078YPDSF_3077
YPES377628 YPN_1633YPN_0658YPN_0430YPN_0431
YPES360102 YPA_1524YPA_2932YPA_3537YPA_3536
YPES349746 YPANGOLA_A2341YPANGOLA_A1046YPANGOLA_A2909YPANGOLA_A2908
YPES214092 YPO2167YPO3431YPO0564YPO0565
YPES187410 Y2154Y0756Y3617Y3616
YENT393305 YE2255YE0684YE0681YE0682
XORY360094 XOOORF_1089XOOORF_1087XOOORF_1089
XORY342109 XOO3593XOO3595XOO3593
XORY291331 XOO3816XOO3818XOO3816
XFAS405440 XFASM12_0465XFASM12_2039XFASM12_0465
XFAS183190 PD_0412PD_1857PD_0412
XFAS160492 XF1120XF0806XF1120
XCAM487884 XCC-B100_3619XCC-B100_3622XCC-B100_3619
XCAM316273 XCAORF_0906XCAORF_0903XCAORF_0906
XCAM314565 XC_3499XC_3501XC_3499
XCAM190485 XCC0736XCC0734XCC0736
XAXO190486 XAC0789XAC0788XAC0789
VVUL216895 VV1_0568VV1_1620VV1_0569VV1_0568
VVUL196600 VV0622VV2783VV0621VV0622
VPAR223926 VP0468VP2528VP0467VP0468
VFIS312309 VF2192VF2190VF2193VF2192
VEIS391735 VEIS_3925VEIS_3923VEIS_3928VEIS_3925
VCHO345073 VC0395_A1971VC0395_A2005VC0395_A1972VC0395_A1971
VCHO VC2392VC2428VC2394VC2392
TTUR377629 TERTU_3038TERTU_3041TERTU_3038
TFUS269800 TFU_2457TFU_2490TFU_2457
TERY203124 TERY_4056TERY_4635TERY_4056
TDEN292415 TBD_0027TBD_2366TBD_0131TBD_0027
TDEN243275 TDE_0299TDE_1898TDE_0299
TCRU317025 TCR_0592TCR_0589TCR_0592
STYP99287 STM1301STM0139STM0136STM0137
STRO369723 STROP_3770STROP_0973STROP_3770
STHE292459 STH2150STH125STH2150
SSP94122 SHEWANA3_0413SHEWANA3_0415SHEWANA3_3735SHEWANA3_0413
SSP84588 SYNW0115OR1190SYNW0086OR1168SYNW0115OR1190
SSP64471 GSYN0111GSYN0095GSYN0111
SSP644076 SCH4B_3238SCH4B_3241SCH4B_3238
SSP321332 CYB_0752CYB_2451CYB_0752
SSP292414 TM1040_2914TM1040_2917TM1040_2914
SSP1131 SYNCC9605_0099SYNCC9605_0081SYNCC9605_0099
SSON300269 SSO_1397SSO_0110SSO_0106SSO_0107
SSED425104 SSED_0419SSED_0421SSED_0418SSED_0419
SPRO399741 SPRO_2716SPRO_0773SPRO_0770SPRO_0771
SPEA398579 SPEA_0407SPEA_0409SPEA_3803SPEA_0407
SONE211586 SO_0410SO_0412SO_4211SO_0410
SMEL266834 SMC02448SMC04458SMC02448
SMED366394 SMED_2514SMED_2518SMED_2514
SLOI323850 SHEW_3444SHEW_3442SHEW_3445SHEW_3444
SLAC55218 SL1157_1148SL1157_1144SL1157_1148
SHIGELLA S1581YACFSECAMUTT
SHAL458817 SHAL_0464SHAL_0466SHAL_0463SHAL_0464
SGLO343509 SG1362SG0460SG0457SG0458
SFUM335543 SFUM_2733SFUM_1202SFUM_2733
SFLE373384 SFV_1459SFV_0094SFV_0091SFV_0092
SFLE198214 AAN43063.1AAN41764.1AAN41760.1AAN41761.1
SENT454169 SEHA_C1428SEHA_C0152SEHA_C0148SEHA_C0149
SENT321314 SCH_1323SCH_0138SCH_0133SCH_0134
SENT295319 SPA1543SPA0143SPA0138SPA0139
SENT220341 STY1813STY0161STY0156STY0157
SENT209261 T1180T0145T0140T0141
SELO269084 SYC0856_CSYC1223_CSYC0856_C
SDYS300267 SDY_1516SDY_0132SDY_0128SDY_0129
SDEN318161 SDEN_3395SDEN_3393SDEN_0363SDEN_3395
SDEG203122 SDE_0858SDE_0856SDE_0858
SBOY300268 SBO_1330SBO_0090SBO_0086SBO_0087
SBAL402882 SHEW185_3948SHEW185_3946SHEW185_0409SHEW185_3948
SBAL399599 SBAL195_4066SBAL195_4064SBAL195_0421SBAL195_4066
SAVE227882 SAV3187SAV5071SAV3187
SALA317655 SALA_1792SALA_1817SALA_1792
RSPH349102 RSPH17025_2758RSPH17025_2761RSPH17025_2758
RSPH349101 RSPH17029_2828RSPH17029_2831RSPH17029_2828
RSPH272943 RSP_1166RSP_1169RSP_1166
RSOL267608 RSC2831RSC2829RSC2834RSC2831
RRUB269796 RRU_A0393RRU_A0235RRU_A0393
RPOM246200 SPO_0060SPO_0057SPO_0060
RPAL316058 RPB_0029RPB_0530RPB_0029
RPAL316057 RPD_0110RPD_0299RPD_0110
RPAL316056 RPC_0523RPC_0526RPC_0523
RPAL316055 RPE_0149RPE_0146RPE_0149
RPAL258594 RPA0594RPA0510RPA0594
RMET266264 RMET_3115RMET_3112RMET_3118RMET_3115
RLEG216596 RL4294RL4298RL4294
RFER338969 RFER_2908RFER_2906RFER_2911RFER_1273
REUT381666 H16_A3261H16_A3259H16_A3264H16_A3261
REUT264198 REUT_A2967REUT_A2964REUT_A2970REUT_A2967
RETL347834 RHE_CH03766RHE_CH03770RHE_CH03766
RDEN375451 RD1_0385RD1_0382RD1_0385
PSYR223283 PSPTO_4397PSPTO_4400PSPTO_4397
PSYR205918 PSYR_4091PSYR_4094PSYR_4091
PSTU379731 PST_3163PST_3166PST_3163
PSP56811 PSYCPRWF_1604PSYCPRWF_2016PSYCPRWF_1921
PSP312153 PNUC_0181PNUC_0182PNUC_0176PNUC_0181
PSP296591 BPRO_0831BPRO_0845BPRO_0828BPRO_0831
PRUM264731 GFRORF0662GFRORF0865GFRORF0664
PPUT76869 PPUTGB1_4501PPUTGB1_4504PPUTGB1_4501
PPUT351746 PPUT_4376PPUT_4379PPUT_4376
PPUT160488 PP_1348PP_1345PP_1348
PPRO298386 PBPRA3207PBPRA3205PBPRA3208PBPRA3207
PNAP365044 PNAP_0741PNAP_0770PNAP_0738PNAP_0741
PMUL272843 PM1218PM1219PM1218
PMEN399739 PMEN_0934PMEN_0931PMEN_0934
PMAR74547 PMT0135PMT0083PMT0135
PMAR59920 PMN2A_1205PMN2A_1220PMN2A_1205
PMAR167555 NATL1_20801NATL1_20951NATL1_20801
PMAR167539 PRO_1789PRO_1801PRO_1789
PLUM243265 PLU3644PLU3642PLU3645PLU3644
PING357804 PING_1156PING_1160PING_1155PING_1156
PHAL326442 PSHAA2744PSHAA2743PSHAA2744
PFLU220664 PFL_4779PFL_4781PFL_4779
PFLU216595 PFLU4931PFLU4933PFLU4931
PFLU205922 PFL_4425PFL_4428PFL_4425
PENT384676 PSEEN4474PSEEN4477PSEEN4474
PCAR338963 PCAR_2360PCAR_2323PCAR_2360
PATL342610 PATL_3510PATL_3340PATL_3511PATL_3510
PAER208964 PA4400PA4403PA4400
PAER208963 PA14_57190PA14_57220PA14_57190
OCAR504832 OCAR_4086OCAR_4082OCAR_4086
OANT439375 OANT_1025OANT_1021OANT_1025
NWIN323098 NWI_0387NWI_0390NWI_0387
NSP35761 NOCA_1154NOCA_1440NOCA_3209
NOCE323261 NOC_0306NOC_2851NOC_0306
NMUL323848 NMUL_A1007NMUL_A2129NMUL_A2485NMUL_A1007
NMEN374833 NMCC_1691NMCC_1444NMCC_1691
NMEN272831 NMC1699NMC1464NMC1699
NMEN122587 NMA2032NMA1735NMA2032
NMEN122586 NMB_0453NMB_1536NMB_0453
NHAM323097 NHAM_0482NHAM_0485NHAM_0482
NGON242231 NGO1506NGO0996NGO1334
NEUT335283 NEUT_0653NEUT_1046NEUT_1109NEUT_0653
NEUR228410 NE2215NE0599NE0808NE2215
NARO279238 SARO_1907SARO_1990SARO_1907
MXAN246197 MXAN_4335MXAN_5345MXAN_4335
MSUC221988 MS0328MS0327MS0328
MSP409 M446_4811M446_1791M446_4811
MSP400668 MMWYL1_2605MMWYL1_2607MMWYL1_2605
MSP266779 MESO_3010MESO_3014MESO_3010
MPET420662 MPE_A0503MPE_A0505MPE_A2744MPE_A0503
MMAR394221 MMAR10_2266MMAR10_2268MMAR10_2266
MMAG342108 AMB0509AMB3900AMB0509
MLOT266835 MLL3459MLR3468MLL3459
MFLA265072 MFLA_2230MFLA_2227MFLA_2234MFLA_2230
MEXT419610 MEXT_0312MEXT_1478MEXT_0312
MCAP243233 MCA_1678MCA_2091MCA_1680MCA_1678
MAQU351348 MAQU_2441MAQU_2443MAQU_2441
MAER449447 MAE_00950MAE_31960MAE_00950
LPNE400673 LPC_0879LPC_0881LPC_0878LPC_0879
LPNE297246 LPP1420LPP1422LPP1419LPP1420
LPNE297245 LPL1564LPL1562LPL1565LPL1564
LINT363253 LI0579LI0630LI0579
LCHO395495 LCHO_0544LCHO_0546LCHO_0745LCHO_0544
LACI272621 LBA0441LBA0673LBA0441
KPNE272620 GKPORF_B0224GKPORF_B4385GKPORF_B4382GKPORF_B4383
JSP375286 MMA_3002MMA_3000MMA_3005MMA_3002
JSP290400 JANN_0292JANN_0289JANN_0292
ILOI283942 IL0446IL0448IL0445IL0446
HSOM228400 HSM_1469HSM_1468HSM_1469
HSOM205914 HS_0991HS_0990HS_0991
HNEP81032 HNE_3173HNE_3176HNE_3173
HINF71421 HI_0910HI_0909HI_0910
HINF281310 NTHI1077NTHI1076NTHI1077
HHAL349124 HHAL_2025HHAL_2024HHAL_2027HHAL_2025
HDUC233412 HD_1786HD_1788HD_1786
HCHE349521 HCH_05871HCH_05873HCH_05871
HARS204773 HEAR2795HEAR2793HEAR2798HEAR2795
GVIO251221 GLR0869GLL1836GLR0869
GSUL243231 GSU_0870GSU_2050GSU_0870
GOXY290633 GOX1794GOX1678GOX1794
GMET269799 GMET_1790GMET_0951GMET_1170
GBET391165 GBCGDNIH1_0625GBCGDNIH1_0622GBCGDNIH1_0625
FPHI484022 FPHI_1755FPHI_0149FPHI_1755
ESP42895 ENT638_1687ENT638_0647ENT638_0644ENT638_0645
EFER585054 EFER_1306EFER_0123EFER_0120EFER_0121
EFAE226185 EF_3218EF_1763EF_3218
ECOO157 Z2791YACFSECAMUTT
ECOL83334 ECS2465ECS0106ECS0102ECS0103
ECOL585397 ECED1_1961ECED1_0101ECED1_0099ECED1_0100
ECOL585057 ECIAI39_1295ECIAI39_0103ECIAI39_0101ECIAI39_0102
ECOL585056 ECUMN_2048ECUMN_0100ECUMN_0098ECUMN_0099
ECOL585055 EC55989_1927EC55989_0096EC55989_0094EC55989_0095
ECOL585035 ECS88_1811ECS88_0105ECS88_0102ECS88_0103
ECOL585034 ECIAI1_1820ECIAI1_0100ECIAI1_0098ECIAI1_0099
ECOL481805 ECOLC_1873ECOLC_3556ECOLC_3559ECOLC_3558
ECOL469008 ECBD_1885ECBD_3516ECBD_3519ECBD_3518
ECOL439855 ECSMS35_1430ECSMS35_0106ECSMS35_0103ECSMS35_0104
ECOL413997 ECB_01728ECB_00102ECB_00099ECB_00100
ECOL409438 ECSE_1930ECSE_0103ECSE_0100ECSE_0101
ECOL405955 APECO1_829APECO1_1886APECO1_1888APECO1_1887
ECOL364106 UTI89_C1955UTI89_C0110UTI89_C0107UTI89_C0108
ECOL362663 ECP_1705ECP_0103ECP_0100ECP_0101
ECOL331111 ECE24377A_1983ECE24377A_0104ECE24377A_0100ECE24377A_0101
ECOL316407 ECK1757:JW1748:B1759ECK0102:JW0099:B0102ECK0099:JW0096:B0098ECK0100:JW0097:B0099
ECOL199310 C2160C0122C0116C0117
ECAR218491 ECA3805ECA3803ECA3806ECA3805
DVUL882 DVU_3051DVU_0825DVU_3051
DSHI398580 DSHI_3564DSHI_3567DSHI_3564
DRED349161 DRED_2447DRED_3078DRED_2447
DPSY177439 DP2521DP2750DP2521
DNOD246195 DNO_0972DNO_0301DNO_0973DNO_0972
DHAF138119 DSY1204DSY4870DSY1204
DDES207559 DDE_0251DDE_1082DDE_0251
DARO159087 DARO_3706DARO_3708DARO_3488DARO_3706
CVIO243365 CV_3611CV_3824CV_4281CV_3611
CTEP194439 CT_0687CT_1239CT_0687
CSP78 CAUL_0937CAUL_0922CAUL_0937
CSP501479 CSE45_3573CSE45_3576CSE45_3573
CSAL290398 CSAL_2179CSAL_2181CSAL_2179
CRUT413404 RMAG_1016RMAG_0013RMAG_1016
CPSY167879 CPS_4451CPS_4454CPS_4453
CPHY357809 CPHY_1617CPHY_0256CPHY_1617
CPER289380 CPR_0898CPR_2139CPR_0898
CPER195103 CPF_1031CPF_2429CPF_1031
CMIC443906 CMM_1935CMM_1054CMM_1935
CMIC31964 CMS1294CMS0673CMS1294
CJAP155077 CJA_2917CJA_2919CJA_2917
CHYD246194 CHY_1339CHY_0162CHY_1339
CDIP257309 DIP1017DIP0699DIP1017
CBUR434922 COXBU7E912_1957COXBU7E912_1956COXBU7E912_1958COXBU7E912_1957
CBUR360115 COXBURSA331_A0240COXBURSA331_A0242COXBURSA331_A0239COXBURSA331_A0240
CBUR227377 CBU_0148CBU_0150CBU_0147CBU_0148
CAULO CC0833CC3068CC0833
BVIE269482 BCEP1808_0547BCEP1808_0549BCEP1808_0544BCEP1808_0547
BTRI382640 BT_0220BT_0217BT_0220
BTHA271848 BTH_I1130BTH_I1132BTH_I1127BTH_I1130
BSUI470137 BSUIS_A1779BSUIS_A1785BSUIS_A1779
BSUI204722 BR_1939BR_1945BR_1939
BSP376 BRADO0585BRADO0590BRADO0585
BSP36773 BCEP18194_A3657BCEP18194_A3659BCEP18194_A3654BCEP18194_A3657
BQUI283165 BQ01900BQ01870BQ01900
BPSE320373 BURPS668_3512BURPS668_3510BURPS668_3515BURPS668_3512
BPSE320372 BURPS1710B_A3815BURPS1710B_A3813BURPS1710B_A3818BURPS1710B_A3815
BPSE272560 BPSL3013BPSL3012BPSL3016BPSL3013
BPET94624 BPET0539BPET0534BPET0706BPET0539
BPER257313 BP3809BP3816BP3014BP3809
BPAR257311 BPP3955BPP3960BPP3743BPP3955
BOVI236 GBOORF1935GBOORF1940GBOORF1935
BMEL359391 BAB1_1940BAB1_1946BAB1_1940
BMEL224914 BMEI0126BMEI0121BMEI0126
BMAL320389 BMA10247_3245BMA10247_3247BMA10247_3242BMA10247_3245
BMAL320388 BMASAVP1_A0459BMASAVP1_A0457BMASAVP1_A0462BMASAVP1_A0459
BMAL243160 BMA_2537BMA_2535BMA_2540BMA_2537
BJAP224911 BLR0207BLL0204BLR0207
BHEN283166 BH02020BH01990BH02020
BFRA295405 BF3077BF1068BF3077
BFRA272559 BF2916BF0983BF2916
BCEN331272 BCEN2424_0572BCEN2424_0574BCEN2424_0569BCEN2424_0572
BCEN331271 BCEN_0090BCEN_0092BCEN_0087BCEN_0090
BCAN483179 BCAN_A1983BCAN_A1989BCAN_A1983
BBRO257310 BB4428BB4433BB4189BB4428
BBAC360095 BARBAKC583_0364BARBAKC583_0361BARBAKC583_0364
BBAC264462 BD0714BD0272BD0714
BAMB398577 BAMMC406_0500BAMMC406_0502BAMMC406_0497BAMMC406_0500
BAMB339670 BAMB_0475BAMB_0477BAMB_0472BAMB_0475
BABO262698 BRUAB1_1915BRUAB1_1921BRUAB1_1915
AVAR240292 AVA_1890AVA_2124AVA_1890
ASP76114 EBA4102EBA4104EBA1433EBA4102
ASP62928 AZO0728AZO0730AZO0893AZO0728
ASP232721 AJS_0799AJS_0801AJS_0796AJS_0799
ASAL382245 ASA_0407ASA_0409ASA_0405ASA_0407
AMAR329726 AM1_3918AM1_1087AM1_3918
AHYD196024 AHA_3875AHA_3873AHA_3877AHA_3875
AFER243159 AFE_2801AFE_2838AFE_2803AFE_2801
AEHR187272 MLG_2084MLG_2083MLG_2086MLG_2084
ADEH290397 ADEH_1775ADEH_0736ADEH_1775
ACRY349163 ACRY_1547ACRY_2246ACRY_1547
ACAU438753 AZC_0315AZC_3307AZC_0315
ABOR393595 ABO_0609ABO_0607ABO_0609
ABAU360910 BAV3038BAV3044BAV2869BAV3038
ABAC204669 ACID345_2654ACID345_2855ACID345_2654
AAVE397945 AAVE_3686AAVE_3684AAVE_3689AAVE_3686


Organism features enriched in list (features available for 254 out of the 272 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00001212292
Arrangment:Clusters 0.0006845117
Arrangment:Singles 0.0037100139286
Disease:Bubonic_plague 0.006612566
Disease:Dysentery 0.006612566
Disease:Gastroenteritis 0.00244231113
Endospores:No 1.169e-1547211
Endospores:Yes 0.00005391053
GC_Content_Range4:0-40 9.830e-3327213
GC_Content_Range4:40-60 4.951e-9131224
GC_Content_Range4:60-100 1.497e-1096145
GC_Content_Range7:0-30 3.861e-10247
GC_Content_Range7:30-40 6.454e-2025166
GC_Content_Range7:50-60 7.232e-1481107
GC_Content_Range7:60-70 1.710e-1192134
Genome_Size_Range5:0-2 3.928e-2714155
Genome_Size_Range5:4-6 3.480e-20131184
Genome_Size_Range5:6-10 0.00002343447
Genome_Size_Range9:1-2 3.646e-1914128
Genome_Size_Range9:2-3 0.000261136120
Genome_Size_Range9:4-5 9.808e-96796
Genome_Size_Range9:5-6 1.484e-96488
Genome_Size_Range9:6-8 0.00001892938
Gram_Stain:Gram_Neg 3.849e-33214333
Gram_Stain:Gram_Pos 1.422e-2514150
Habitat:Host-associated 0.005822977206
Habitat:Multiple 0.001459393178
Habitat:Specialized 0.00005391053
Motility:No 1.522e-1230151
Motility:Yes 1.058e-9152267
Optimal_temp.:25-30 2.490e-61819
Optimal_temp.:35-37 0.00001711313
Oxygen_Req:Aerobic 0.004026194185
Oxygen_Req:Anaerobic 7.764e-723102
Oxygen_Req:Facultative 0.0011072104201
Pathogenic_in:Plant 0.00349051215
Salinity:Non-halophilic 0.002577934106
Shape:Coccus 6.249e-71682
Shape:Rod 4.057e-16198347
Shape:Sphere 0.0077787319
Shape:Spiral 0.0001956534
Temp._range:Hyperthermophilic 0.0000259123
Temp._range:Mesophilic 0.0004888221473
Temp._range:Thermophilic 0.0001247535



Back to top


ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 276
Effective number of orgs (counting one per cluster within 468 clusters): 217

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM41
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis1
WPIP80849 Wolbachia endosymbiont of Brugia malayi1
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.1
TSP1755 Thermoanaerobacter sp.0
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TMAR243274 ncbi Thermotoga maritima MSB81
TLET416591 ncbi Thermotoga lettingae TMO1
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122281
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1220
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington1
RSP357808 ncbi Roseiflexus sp. RS-11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RRIC452659 ncbi Rickettsia rickettsii Iowa1
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith1
RPRO272947 ncbi Rickettsia prowazekii Madrid E1
RMAS416276 ncbi Rickettsia massiliae MTU51
RFEL315456 ncbi Rickettsia felis URRWXCal21
RCON272944 ncbi Rickettsia conorii Malish 71
RCAS383372 ncbi Roseiflexus castenholzii DSM 139411
RCAN293613 ncbi Rickettsia canadensis McKiel1
RBEL391896 ncbi Rickettsia bellii OSU 85-3891
RBEL336407 ncbi Rickettsia bellii RML369-C1
RAKA293614 ncbi Rickettsia akari Hartford1
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI1
PSP117 Pirellula sp.1
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92151
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR146891 ncbi Prochlorococcus marinus AS96011
PLUT319225 ncbi Chlorobium luteolum DSM 2731
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong1
OIHE221109 ncbi Oceanobacillus iheyensis HTE8310
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NFAR247156 ncbi Nocardia farcinica IFM 101520
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390731
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MSYN262723 ncbi Mycoplasma synoviae 530
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice11
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HINF374930 ncbi Haemophilus influenzae PittEE1
HHEP235279 ncbi Helicobacter hepaticus ATCC 514491
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237791
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GFOR411154 ncbi Gramella forsetii KT08030
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-001
FTUL418136 ncbi Francisella tularensis tularensis WY96-34181
FTUL393011 ncbi Francisella tularensis holarctica OSU181
FTUL351581 Francisella tularensis holarctica FSC2001
FSP106370 ncbi Frankia sp. CcI31
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FMAG334413 ncbi Finegoldia magna ATCC 293281
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
ECAN269484 ncbi Ehrlichia canis Jake1
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DOLE96561 ncbi Desulfococcus oleovorans Hxd31
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
DETH243164 ncbi Dehalococcoides ethenogenes 1951
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA1
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPER195102 ncbi Clostridium perfringens 131
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4111
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIF272563 ncbi Clostridium difficile 6301
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD31
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN1
CBLO203907 ncbi Candidatus Blochmannia floridanus1
CABO218497 ncbi Chlamydophila abortus S26/31
BXEN266265 ncbi Burkholderia xenovorans LB4000
BWEI315730 ncbi Bacillus weihenstephanensis KBAB40
BTUR314724 ncbi Borrelia turicatae 91E1351
BTHU412694 ncbi Bacillus thuringiensis Al Hakam0
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-270
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSUB ncbi Bacillus subtilis subtilis 1680
BPUM315750 ncbi Bacillus pumilus SAFR-0321
BLON206672 ncbi Bifidobacterium longum NCC27051
BLIC279010 ncbi Bacillus licheniformis ATCC 145801
BHER314723 ncbi Borrelia hermsii DAH1
BHAL272558 ncbi Bacillus halodurans C-1250
BGAR290434 ncbi Borrelia garinii PBi1
BCLA66692 ncbi Bacillus clausii KSM-K160
BCIC186490 Candidatus Baumannia cicadellinicola1
BCER572264 ncbi Bacillus cereus 03BB1020
BCER405917 Bacillus cereus W1
BCER315749 ncbi Bacillus cytotoxicus NVH 391-981
BCER288681 ncbi Bacillus cereus E33L0
BCER226900 ncbi Bacillus cereus ATCC 145791
BBUR224326 ncbi Borrelia burgdorferi B311
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BANT592021 ncbi Bacillus anthracis A02480
BANT568206 ncbi Bacillus anthracis CDC 6840
BANT261594 ncbi Bacillus anthracis Ames Ancestor0
BANT260799 ncbi Bacillus anthracis Sterne0
BAFZ390236 ncbi Borrelia afzelii PKo1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ1
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
AMAR234826 ncbi Anaplasma marginale St. Maries1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ABUT367737 ncbi Arcobacter butzleri RM40180
AAEO224324 ncbi Aquifex aeolicus VF51


Names of the homologs of the genes in the group in each of these orgs
  G6954   EG12313   EG10936   EG10626   
ZMOB264203 ZMO0924
WSUC273121
WPIP955 WD_0549
WPIP80849 WB_0416
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852 TTHA1251
TTHE262724 TT_C0887
TTEN273068
TSP28240 TRQ2_1241
TSP1755
TROS309801
TPSE340099
TPET390874 TPET_1214
TPEN368408
TPAL243276 TP_0379
TMAR243274 TM_1578
TLET416591 TLET_0698
TKOD69014
TDEN326298
TACI273075
SWOL335541
STOK273063
STHE322159
STHE299768 STR0679
STHE264199 STU0679
SSUI391296
SSUI391295
SSP387093
SSOL273057
SSAP342451
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SHAE279808
SGOR29390
SERY405948 SACE_0999
SEPI176280 SE_2040
SEPI176279 SERP2053
SAUR93062 SACOL2500
SAUR93061 SAOUHSC_02791
SAUR426430 NWMN_2387
SAUR367830 SAUSA300_2432
SAUR282458 SAR2575
SAUR273036
SAGA211110
SAGA208435
SAGA205921
SACI330779
RXYL266117
RTYP257363 RT0564
RSP357808 ROSERS_0823
RSAL288705 RSAL33209_0751
RRIC452659 RRIOWA_1045
RRIC392021 A1G_04855
RPRO272947 RP575
RMAS416276 RMA_0912
RFEL315456 RF_0941
RCON272944 RC0879
RCAS383372 RCAS_0657
RCAN293613 A1E_01990
RBEL391896 A1I_02405
RBEL336407 RBE_0897
RAKA293614 A1C_04485
PTOR263820
PTHE370438 PTH_2753
PSP117 RB11690
PPEN278197
PMOB403833
PMAR93060 P9215_19131
PMAR74546 PMT9312_1732
PMAR167546 P9301ORF_1869
PMAR167542 P9515ORF_1909
PMAR167540 PMM1639
PMAR146891 A9601_18491
PLUT319225 PLUT_1088
PISL384616
PINT246198 PIN_0259
PHOR70601
PGIN242619
PFUR186497
PDIS435591 BDI_0484
PAST100379
PARS340102
PAER178306
PACN267747 PPA1333
PABY272844
OTSU357244 OTBS_0586
OIHE221109
NSP387092 NIS_0830
NSEN222891 NSE_0232
NPHA348780
NFAR247156
MTHE349307
MTHE264732 MOTH_0229
MTHE187420 MTH122
MSYN262723
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631 ML0779
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBAR269797
MART243272
MAEO419665
LXYL281090 LXX05400
LWEL386043
LSAK314315 LSA0495
LREU557436 LREU_0365
LPLA220668
LMON265669
LMON169963
LMES203120 LEUM_0183
LLAC272623 L0334
LLAC272622 LACR_0101
LJOH257314 LJ_0846
LINT267671 LIC_11944
LINT189518 LA1960
LINN272626
LHEL405566 LHV_0720
LGAS324831 LGAS_1331
LDEL390333 LDB0607
LDEL321956 LBUL_0542
LCAS321967 LSEI_0929
LBRE387344
LBOR355277 LBJ_1552
LBOR355276 LBL_1776
LBIF456481 LEPBI_I2859
LBIF355278 LBF_2759
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HMUK485914
HMOD498761 HM1_1266
HMAR272569
HINF374930 CGSHIEE_07470
HHEP235279 HH_0317
HBUT415426
HAUR316274 HAUR_3205
HACI382638
GFOR411154
FTUL458234 FTA_1545
FTUL418136 FTW_1470
FTUL393011 FTH_1418
FTUL351581 FTL_1458
FSP106370 FRANCCI3_3866
FNUC190304 FN1718
FNOD381764 FNOD_1313
FMAG334413 FMG_1531
FJOH376686
FALN326424 FRAAL6135
ERUM302409 ERGA_CDS_09200
ERUM254945 ERWE_CDS_09290
ECHA205920 ECH_1149
ECAN269484 ECAJ_0921
DSP255470 CBDBA388
DSP216389 DEHABAV1_0411
DOLE96561 DOLE_2483
DGEO319795 DGEO_1058
DETH243164 DET_0434
CVES412965 COSY_0014
CTRA471473
CTRA471472
CSUL444179
CPRO264201 PC0146
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPER195102 CPE2171
CPEL335992
CMUR243161
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537 JK1630
CHOM360107
CFET360106
CFEL264202 CF0089
CEFF196164 CE0774
CDIF272563 CD0143
CDES477974
CCUR360105
CCON360104
CCHL340177 CAG_1018
CCAV227941
CBOT441772
CBLO291272 BPEN_152
CBLO203907 BFL148
CABO218497 CAB894
BXEN266265
BWEI315730
BTUR314724 BT0154
BTHU412694
BTHU281309
BTHE226186
BSUB
BPUM315750 BPUM_3178
BLON206672 BL1419
BLIC279010 BL03381
BHER314723 BH0154
BHAL272558
BGAR290434 BG0152
BCLA66692
BCIC186490 BCI_0515
BCER572264
BCER405917 BCE_5295
BCER315749 BCER98_3726
BCER288681
BCER226900 BC_5189
BBUR224326 BB_0154
BAPH372461 BCC_130
BANT592021
BANT568206
BANT261594
BANT260799
BAFZ390236 BAPKO_0155
AYEL322098
AURANTIMONAS
APHA212042 APH_1178
APER272557
AORE350688
AMAR234826 AM1120
AFUL224325
ABUT367737
AAEO224324 AQ_1870


Organism features enriched in list (features available for 259 out of the 276 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00001805992
Arrangment:Pairs 0.002146337112
Arrangment:Singles 0.0062421114286
Disease:Food_poisoning 0.000623299
Disease:Pharyngitis 0.001427588
Disease:Wide_range_of_infections 0.00011791111
Disease:bronchitis_and_pneumonitis 0.001427588
Endospores:No 1.642e-12134211
GC_Content_Range4:0-40 1.120e-28158213
GC_Content_Range4:40-60 0.000038277224
GC_Content_Range4:60-100 4.839e-1624145
GC_Content_Range7:0-30 0.00012963347
GC_Content_Range7:30-40 1.097e-21125166
GC_Content_Range7:50-60 6.094e-1020107
GC_Content_Range7:60-70 3.776e-1719134
Genome_Size_Range5:0-2 1.323e-36134155
Genome_Size_Range5:4-6 1.603e-2427184
Genome_Size_Range5:6-10 6.735e-6747
Genome_Size_Range9:0-1 9.339e-82527
Genome_Size_Range9:1-2 5.832e-27109128
Genome_Size_Range9:2-3 0.000457869120
Genome_Size_Range9:3-4 0.00098682277
Genome_Size_Range9:4-5 1.228e-111496
Genome_Size_Range9:5-6 1.565e-101388
Genome_Size_Range9:6-8 0.0000202538
Gram_Stain:Gram_Neg 3.328e-16100333
Gram_Stain:Gram_Pos 9.859e-894150
Habitat:Host-associated 0.0028998106206
Habitat:Multiple 0.001025663178
Habitat:Specialized 0.00017863653
Motility:No 0.000060587151
Motility:Yes 0.000013494267
Optimal_temp.:25-30 0.0001795119
Oxygen_Req:Aerobic 0.000097962185
Oxygen_Req:Anaerobic 3.125e-666102
Salinity:Non-halophilic 0.008823857106
Shape:Coccus 4.967e-65582
Shape:Irregular_coccus 0.00001721617
Shape:Rod 3.480e-17105347
Shape:Sphere 0.00167341519
Shape:Spiral 4.525e-72934
Temp._range:Hyperthermophilic 1.402e-72223
Temp._range:Mesophilic 0.0002428194473
Temp._range:Thermophilic 0.00059572535



Back to top


ORGANISMS ENRICHED FOR GROUP:




Back to top


ORGANISMS DEPLETED FOR GROUP:




Back to top


PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GLYCOCAT-PWY (glycogen degradation I)2462100.6793
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3002330.6608
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951780.6481
NAGLIPASYN-PWY (lipid IVA biosynthesis)3482500.6392
PWY-4041 (γ-glutamyl cycle)2792200.6390
PWY-1269 (CMP-KDO biosynthesis I)3252390.6291
PWY-5918 (heme biosynthesis I)2722130.6150
GLUTATHIONESYN-PWY (glutathione biosynthesis)3392410.6043
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491440.5990
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2862170.5984
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181830.5959
PWY-5913 (TCA cycle variation IV)3012230.5931
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251840.5779
TYRFUMCAT-PWY (tyrosine degradation I)1841610.5723
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2912150.5705
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2962160.5623
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831580.5550
PWY-5028 (histidine degradation II)1301250.5435
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911600.5377
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2902090.5345
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3292260.5339
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222600.5245
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551910.5244
PWY-5148 (acyl-CoA hydrolysis)2271760.5171
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491850.5040
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491850.5040
P344-PWY (acrylonitrile degradation)2101650.5019
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561350.4997
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3982470.4934
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761450.4900
AST-PWY (arginine degradation II (AST pathway))1201110.4810
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3652310.4707
PWY-5340 (sulfate activation for sulfonation)3852380.4657
GLUCONSUPER-PWY (D-gluconate degradation)2291690.4633
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911490.4605
PWY0-501 (lipoate biosynthesis and incorporation I)3852370.4590
PWY-6268 (adenosylcobalamin salvage from cobalamin)3172090.4570
PWY-5386 (methylglyoxal degradation I)3052030.4521
PWY0-862 (cis-dodecenoyl biosynthesis)3432190.4505
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3002000.4471
CHOLINE-BETAINE-ANA-PWY (choline degradation I)1351150.4404
REDCITCYC (TCA cycle variation II)1741370.4403
PROSYN-PWY (proline biosynthesis I)4752650.4381
PWY-5938 ((R)-acetoin biosynthesis I)3762300.4356
SO4ASSIM-PWY (sulfate reduction I (assimilatory))3112030.4351
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))1381160.4345
PLPSAL-PWY (pyridoxal 5'-phosphate salvage pathway)3742290.4342
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96900.4311
PWY-6087 (4-chlorocatechol degradation)2231610.4296
DAPLYSINESYN-PWY (lysine biosynthesis I)3422150.4272
PHENYLALANINE-DEG1-PWY (phenylalanine degradation I (aerobic))2891920.4272
PWY-46 (putrescine biosynthesis III)1381150.4267
GALACTARDEG-PWY (D-galactarate degradation I)1511220.4235
PWY-6389 ((S)-acetoin biosynthesis)3682250.4234
GALACTCAT-PWY (D-galactonate degradation)104940.4217
GLUCARDEG-PWY (D-glucarate degradation I)1521220.4193
PWY-5669 (phosphatidylethanolamine biosynthesis I)4162420.4148
GLUT-REDOX-PWY (glutathione redox reactions II)2461690.4078
PWY-6193 (3-chlorocatechol degradation II (ortho))1941430.4075
PWY-5188 (tetrapyrrole biosynthesis I)4392490.4067
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112970.4054
P601-PWY (D-camphor degradation)95860.4008



Back to top


PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG12313   EG10936   EG10626   
G69540.999380.9997210.999988
EG123130.9993520.999573
EG109360.999819
EG10626



Back to top


PAIRWISE BLAST SCORES:

  G6954   EG12313   EG10936   EG10626   
G69540.0f0--1.5e-8
EG12313-0.0f0--
EG10936--0.0f0-
EG106261.5e-8--0.0f0



Back to top


PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



Back to top


GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10626 EG10936 (centered at EG10626)
EG12313 (centered at EG12313)
G6954 (centered at G6954)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6954   EG12313   EG10936   EG10626   
347/623124/623415/623322/623
AAEO224324:0:Tyes--0-
AAUR290340:2:Tyes0-1038-
AAVE397945:0:Tyes2052
ABAC204669:0:Tyes0-2020
ABAU360910:0:Tyes1721780172
ABOR393595:0:Tyes2-02
ACAU438753:0:Tyes0-30270
ACEL351607:0:Tyes104-0-
ACRY349163:8:Tyes0-7030
ADEH290397:0:Tyes1052-01052
AEHR187272:0:Tyes1031
AFER243159:0:Tyes03720
AHYD196024:0:Tyes2042
ALAI441768:0:Tyes0--0
AMAR234826:0:Tyes--0-
AMAR329726:9:Tyes2805-02805
AMET293826:0:Tyes0--0
ANAE240017:0:Tyes990-0-
APHA212042:0:Tyes--0-
APLE416269:0:Tyes--02
APLE434271:0:Tno--02
ASAL382245:5:Tyes2402
ASP1667:3:Tyes0-1232-
ASP232721:2:Tyes3503
ASP62928:0:Tyes021670
ASP62977:0:Tyes--01499
ASP76114:2:Tyes1559156001559
AVAR240292:3:Tyes0-2350
BABO262698:1:Tno0-60
BAFZ390236:2:Fyes--0-
BAMB339670:3:Tno3503
BAMB398577:3:Tno3503
BAMY326423:0:Tyes0--0
BAPH198804:0:Tyes--01
BAPH372461:0:Tyes--0-
BBAC264462:0:Tyes407-0407
BBAC360095:0:Tyes3-03
BBRO257310:0:Tyes2462510246
BBUR224326:21:Fno--0-
BCAN483179:1:Tno0-60
BCEN331271:2:Tno3503
BCEN331272:3:Tyes3503
BCER226900:1:Tyes--0-
BCER315749:1:Tyes--0-
BCER405917:1:Tyes--0-
BCIC186490:0:Tyes--0-
BFRA272559:1:Tyes1888-01888
BFRA295405:0:Tno2036-02036
BGAR290434:2:Fyes--0-
BHEN283166:0:Tyes3-03
BHER314723:0:Fyes--0-
BJAP224911:0:Fyes3-03
BLIC279010:0:Tyes--0-
BLON206672:0:Tyes--0-
BMAL243160:1:Tno2052
BMAL320388:1:Tno2052
BMAL320389:1:Tyes3503
BMEL224914:1:Tno5-05
BMEL359391:1:Tno0-60
BOVI236:1:Tyes0-40
BPAR257311:0:Tno2152200215
BPER257313:0:Tyes7367430736
BPET94624:0:Tyes501795
BPSE272560:1:Tyes1041
BPSE320372:1:Tno2052
BPSE320373:1:Tno2052
BPUM315750:0:Tyes--0-
BQUI283165:0:Tyes3-03
BSP107806:2:Tyes--01
BSP36773:2:Tyes3503
BSP376:0:Tyes0-50
BSUI204722:1:Tyes0-60
BSUI470137:1:Tno0-60
BTHA271848:1:Tno3503
BTRI382640:1:Tyes3-03
BTUR314724:0:Fyes--0-
BVIE269482:7:Tyes3503
CABO218497:0:Tyes--0-
CACE272562:1:Tyes0--0
CAULO:0:Tyes0-22730
CBEI290402:0:Tyes0--0
CBLO203907:0:Tyes--0-
CBLO291272:0:Tno--0-
CBOT36826:1:Tno0--0
CBOT441770:0:Tyes0--0
CBOT441771:0:Tno0--0
CBOT498213:1:Tno0--0
CBOT508765:1:Tyes0--0
CBOT515621:2:Tyes0--0
CBOT536232:0:Tno0--0
CBUR227377:1:Tyes1301
CBUR360115:1:Tno1301
CBUR434922:2:Tno1021
CCHL340177:0:Tyes--0-
CDIF272563:1:Tyes--0-
CDIP257309:0:Tyes313-0313
CEFF196164:0:Fyes--0-
CFEL264202:1:Tyes--0-
CGLU196627:0:Tyes0--0
CHUT269798:0:Tyes0--0
CHYD246194:0:Tyes1143-01143
CJAP155077:0:Tyes0-20
CJEI306537:0:Tyes--0-
CMIC31964:2:Tyes592-0592
CMIC443906:2:Tyes906-0906
CNOV386415:0:Tyes0--0
CPER195102:1:Tyes--0-
CPER195103:0:Tno0-13740
CPER289380:3:Tyes0-12230
CPHY357809:0:Tyes1350-01350
CPRO264201:0:Fyes--0-
CPSY167879:0:Tyes-032
CRUT413404:0:Tyes945-0945
CSAL290398:0:Tyes0-20
CSP501479:7:Fyes0-30
CSP78:2:Tyes15-015
CTEP194439:0:Tyes0-5420
CTET212717:0:Tyes0--0
CVES412965:0:Tyes--0-
CVIO243365:0:Tyes02146960
DARO159087:0:Tyes2192210219
DDES207559:0:Tyes0-8420
DETH243164:0:Tyes--0-
DGEO319795:1:Tyes--0-
DHAF138119:0:Tyes0-37040
DNOD246195:0:Tyes6480649648
DOLE96561:0:Tyes--0-
DPSY177439:2:Tyes0-2430
DRAD243230:3:Tyes--3090
DRED349161:0:Tyes0-6460
DSHI398580:5:Tyes0-30
DSP216389:0:Tyes--0-
DSP255470:0:Tno--0-
DVUL882:1:Tyes2215-02215
ECAN269484:0:Tyes--0-
ECAR218491:0:Tyes2032
ECHA205920:0:Tyes--0-
ECOL199310:0:Tno1983601
ECOL316407:0:Tno1669301
ECOL331111:6:Tno1801401
ECOL362663:0:Tno1594301
ECOL364106:1:Tno1844301
ECOL405955:2:Tyes1576201
ECOL409438:6:Tyes1860301
ECOL413997:0:Tno1627301
ECOL439855:4:Tno1279301
ECOL469008:0:Tno0161416171616
ECOL481805:0:Tno0168716901689
ECOL585034:0:Tno1701201
ECOL585035:0:Tno1650301
ECOL585055:0:Tno1821201
ECOL585056:2:Tno1955201
ECOL585057:0:Tno1211201
ECOL585397:0:Tno1787201
ECOL83334:0:Tno2413401
ECOLI:0:Tno1696301
ECOO157:0:Tno2454401
EFAE226185:3:Tyes1357-01357
EFER585054:1:Tyes1173301
ELIT314225:0:Tyes0-18-
ERUM254945:0:Tyes--0-
ERUM302409:0:Tno--0-
ESP42895:1:Tyes1058301
FALN326424:0:Tyes0---
FMAG334413:1:Tyes--0-
FNOD381764:0:Tyes--0-
FNUC190304:0:Tyes--0-
FPHI484022:1:Tyes1657-01657
FRANT:0:Tno--0202
FSP106370:0:Tyes0---
FSP1855:0:Tyes0--0
FSUC59374:0:Tyes0--0
FTUL351581:0:Tno--0-
FTUL393011:0:Tno--0-
FTUL393115:0:Tyes--0200
FTUL401614:0:Tyes--0191
FTUL418136:0:Tno--0-
FTUL458234:0:Tno--0-
GBET391165:0:Tyes3-03
GKAU235909:1:Tyes0-103-
GMET269799:1:Tyes842-0214
GOXY290633:5:Tyes116-0116
GSUL243231:0:Tyes0-11730
GTHE420246:1:Tyes0--0
GURA351605:0:Tyes691-0-
GVIO251221:0:Tyes0-9800
HARS204773:0:Tyes2052
HAUR316274:2:Tyes--0-
HCHE349521:0:Tyes0-20
HDUC233412:0:Tyes0-10
HHAL349124:0:Tyes1031
HHEP235279:0:Tyes--0-
HINF281310:0:Tyes1-01
HINF374930:0:Tyes--0-
HINF71421:0:Tno1-01
HMOD498761:0:Tyes--0-
HNEP81032:0:Tyes0-30
HSOM205914:1:Tyes1-01
HSOM228400:0:Tno1-01
ILOI283942:0:Tyes1301
JSP290400:1:Tyes3-03
JSP375286:0:Tyes2052
KPNE272620:2:Tyes0408340804081
KRAD266940:2:Fyes0-1859-
LACI272621:0:Tyes0-2400
LBIF355278:2:Tyes--0-
LBIF456481:2:Tno--0-
LBOR355276:1:Tyes--0-
LBOR355277:1:Tno--0-
LCAS321967:1:Tyes--0-
LCHO395495:0:Tyes022020
LDEL321956:0:Tyes--0-
LDEL390333:0:Tyes--0-
LGAS324831:0:Tyes--0-
LHEL405566:0:Tyes--0-
LINT189518:1:Tyes--0-
LINT267671:1:Tno--0-
LINT363253:3:Tyes0-510
LJOH257314:0:Tyes--0-
LLAC272622:5:Tyes--0-
LLAC272623:0:Tyes--0-
LMES203120:1:Tyes--0-
LPNE272624:0:Tno-30-
LPNE297245:1:Fno2032
LPNE297246:1:Fyes1301
LPNE400673:0:Tno1301
LREU557436:0:Tyes--0-
LSAK314315:0:Tyes--0-
LSPH444177:1:Tyes0--0
LXYL281090:0:Tyes--0-
MABS561007:1:Tyes0-2285-
MACE188937:0:Tyes0--0
MAER449447:0:Tyes0-31180
MAQU351348:2:Tyes0-20
MAVI243243:0:Tyes0--0
MBOV233413:0:Tno0-2101-
MBOV410289:0:Tno0-2064-
MCAP243233:0:Tyes040020
MEXT419610:0:Tyes0-11810
MFLA265072:0:Tyes3073
MGIL350054:3:Tyes0-2570-
MLEP272631:0:Tyes--0-
MLOT266835:2:Tyes0-70
MMAG342108:0:Tyes0-33910
MMAR394221:0:Tyes0-20
MPET420662:1:Tyes0222350
MSME246196:0:Tyes3237-0-
MSP164756:1:Tno2710-0-
MSP164757:0:Tno2885-0-
MSP189918:2:Tyes2757-0-
MSP266779:3:Tyes0-40
MSP400668:0:Tyes0-20
MSP409:2:Tyes2906-02906
MSTA339860:0:Tyes0--0
MSUC221988:0:Tyes1-01
MTBCDC:0:Tno0-2250-
MTBRV:0:Tno0-2101-
MTHE187420:0:Tyes0---
MTHE264732:0:Tyes--0-
MTUB336982:0:Tno0-2066-
MTUB419947:0:Tyes0-2181-
MVAN350058:0:Tyes2770-0-
MXAN246197:0:Tyes0-9760
NARO279238:0:Tyes0-910
NEUR228410:0:Tyes164002101640
NEUT335283:2:Tyes03824440
NGON242231:0:Tyes464-0304
NHAM323097:2:Tyes0-30
NMEN122586:0:Tno0-10420
NMEN122587:0:Tyes300-0300
NMEN272831:0:Tno198-0198
NMEN374833:0:Tno242-0242
NMUL323848:3:Tyes0111214640
NOCE323261:1:Tyes0-25030
NSEN222891:0:Tyes--0-
NSP103690:6:Tyes--10520
NSP35761:1:Tyes0-2892067
NSP387092:0:Tyes--0-
NWIN323098:0:Tyes0-30
OANT439375:5:Tyes4-04
OCAR504832:0:Tyes4-04
OTSU357244:0:Fyes--0-
PACN267747:0:Tyes--0-
PAER208963:0:Tyes0-30
PAER208964:0:Tno0-30
PARC259536:0:Tyes--01261
PATL342610:0:Tyes1680169168
PCAR338963:0:Tyes41-041
PCRY335284:1:Tyes--01405
PDIS435591:0:Tyes--0-
PENT384676:0:Tyes0-30
PFLU205922:0:Tyes0-30
PFLU216595:1:Tyes0-20
PFLU220664:0:Tyes0-20
PHAL326442:1:Tyes1-01
PING357804:0:Tyes1501
PINT246198:0:Tyes--0-
PLUM243265:0:Fyes2032
PLUT319225:0:Tyes--0-
PMAR146891:0:Tyes--0-
PMAR167539:0:Tyes0-120
PMAR167540:0:Tyes--0-
PMAR167542:0:Tyes--0-
PMAR167546:0:Tyes--0-
PMAR167555:0:Tyes0-150
PMAR59920:0:Tno0-150
PMAR74546:0:Tyes--0-
PMAR74547:0:Tyes52-052
PMAR93060:0:Tyes--0-
PMEN399739:0:Tyes3-03
PMUL272843:1:Tyes0-10
PNAP365044:8:Tyes33303
PPRO298386:2:Tyes2032
PPUT160488:0:Tno3-03
PPUT351746:0:Tyes0-30
PPUT76869:0:Tno0-30
PRUM264731:0:Tyes0-2002
PSP117:0:Tyes--0-
PSP296591:2:Tyes31803
PSP312153:0:Tyes5605
PSP56811:2:Tyes0-421326
PSTU379731:0:Tyes0-30
PSYR205918:0:Tyes0-30
PSYR223283:2:Tyes0-30
PTHE370438:0:Tyes--0-
RAKA293614:0:Fyes--0-
RALB246199:0:Tyes0--0
RBEL336407:0:Tyes--0-
RBEL391896:0:Fno--0-
RCAN293613:0:Fyes--0-
RCAS383372:0:Tyes--0-
RCON272944:0:Tno--0-
RDEN375451:4:Tyes3-03
RETL347834:5:Tyes0-40
REUT264198:3:Tyes3063
REUT381666:2:Tyes2052
RFEL315456:2:Tyes--0-
RFER338969:1:Tyes1635163316380
RLEG216596:6:Tyes0-40
RMAS416276:1:Tyes--0-
RMET266264:2:Tyes3063
RPAL258594:0:Tyes85-085
RPAL316055:0:Tyes3-03
RPAL316056:0:Tyes0-30
RPAL316057:0:Tyes0-1900
RPAL316058:0:Tyes0-5080
RPOM246200:1:Tyes3-03
RPRO272947:0:Tyes--0-
RRIC392021:0:Fno--0-
RRIC452659:0:Tyes--0-
RRUB269796:1:Tyes158-0158
RSAL288705:0:Tyes0---
RSOL267608:1:Tyes2052
RSP101510:3:Fyes0-398-
RSP357808:0:Tyes--0-
RSPH272943:4:Tyes0-30
RSPH349101:2:Tno0-30
RSPH349102:5:Tyes0-30
RTYP257363:0:Tno--0-
SACI56780:0:Tyes1565-0-
SALA317655:1:Tyes0-250
SARE391037:0:Tyes3151-0-
SAUR158878:1:Tno0--0
SAUR158879:1:Tno0--0
SAUR196620:0:Tno0--0
SAUR282458:0:Tno0---
SAUR282459:0:Tno0--0
SAUR359786:1:Tno0--0
SAUR359787:1:Tno0--0
SAUR367830:3:Tno0---
SAUR418127:0:Tyes0--0
SAUR426430:0:Tno0---
SAUR93061:0:Fno0---
SAUR93062:1:Tno0---
SAVE227882:1:Fyes0-19240
SBAL399599:3:Tyes3735373303735
SBAL402882:1:Tno3601359903601
SBOY300268:1:Tyes1165401
SCO:2:Fyes0--0
SDEG203122:0:Tyes2-02
SDEN318161:0:Tyes3103310103103
SDYS300267:1:Tyes1323401
SELO269084:0:Tyes0-3780
SENT209261:0:Tno989501
SENT220341:0:Tno1481501
SENT295319:0:Tno1343501
SENT321314:2:Tno1215501
SENT454169:2:Tno1237401
SEPI176279:1:Tyes0---
SEPI176280:0:Tno0---
SERY405948:0:Tyes0---
SFLE198214:0:Tyes1336401
SFLE373384:0:Tno1300301
SFUM335543:0:Tyes1516-01516
SGLO343509:3:Tyes928301
SHAL458817:0:Tyes6806
SHIGELLA:0:Tno1348401
SLAC55218:1:Fyes4-04
SLOI323850:0:Tyes20132
SMED366394:3:Tyes0-40
SMEL266834:2:Tyes0-40
SONE211586:1:Tyes0237450
SPEA398579:0:Tno0235220
SPRO399741:1:Tyes1976301
SRUB309807:1:Tyes0--0
SSED425104:0:Tyes1416014
SSON300269:1:Tyes1232401
SSP1131:0:Tyes15-015
SSP1148:0:Tyes0--0
SSP292414:2:Tyes0-30
SSP321327:0:Tyes0--0
SSP321332:0:Tyes0-16580
SSP644076:6:Fyes0-30
SSP64471:0:Tyes16-016
SSP84588:0:Tyes29-029
SSP94122:1:Tyes0234010
STHE264199:0:Tyes0---
STHE292459:0:Tyes2098-02098
STHE299768:0:Tno0---
STRO369723:0:Tyes2785-02785
STYP99287:1:Tyes1153301
TCRU317025:0:Tyes3-03
TDEN243275:0:Tyes0-15880
TDEN292415:0:Tyes023821060
TELO197221:0:Tyes0--0
TERY203124:0:Tyes0-5390
TFUS269800:0:Tyes0-340
TLET416591:0:Tyes--0-
TMAR243274:0:Tyes--0-
TPAL243276:0:Tyes--0-
TPET390874:0:Tno--0-
TSP28240:0:Tyes--0-
TTHE262724:1:Tyes--0-
TTHE300852:2:Tyes--0-
TTUR377629:0:Tyes0-20
VCHO:0:Tyes03620
VCHO345073:1:Tno03310
VEIS391735:1:Tyes2052
VFIS312309:2:Tyes2032
VPAR223926:1:Tyes1210801
VVUL196600:2:Tyes1220301
VVUL216895:1:Tno0101610
WPIP80849:0:Tyes--0-
WPIP955:0:Tyes--0-
XAUT78245:1:Tyes0--0
XAXO190486:0:Tyes1-01
XCAM190485:0:Tyes2-02
XCAM314565:0:Tno0-20
XCAM316273:0:Tno3-03
XCAM487884:0:Tno0-30
XFAS160492:2:Tno320-0320
XFAS183190:1:Tyes0-14190
XFAS405440:0:Tno0-14520
XORY291331:0:Tno0-20
XORY342109:0:Tyes0-20
XORY360094:0:Tno4-04
YENT393305:1:Tyes1514301
YPES187410:5:Tno1400028782877
YPES214092:3:Tno1537274301
YPES349746:2:Tno1260018121811
YPES360102:3:Tyes0142220362035
YPES377628:2:Tno122823201
YPES386656:2:Tno0196821212120
YPSE273123:2:Tno1414401
YPSE349747:2:Tno0138213851384
ZMOB264203:0:Tyes--0-



Back to top