CANDIDATE ID: 363

CANDIDATE ID: 363

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9953717e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG12437 (menE) (b2260)
   Products of gene:
     - O-SUCCINYLBENZOATE-COA-LIG-MONOMER (MenE)
     - MENE-CPLX (o-succinylbenzoate-CoA ligase)
       Reactions:
        ATP + o-succinylbenzoate + coenzyme A  ->  AMP + diphosphate + o-succinylbenzoyl-CoA + H+
         In pathways
         PWY-5850 (PWY-5850)
         PWY-5840 (PWY-5840)
         PWY-5845 (PWY-5845)
         PWY-5860 (PWY-5860)
         PWY-5862 (PWY-5862)
         PWY-5838 (superpathway of menaquinone-8 biosynthesis I)
         PWY-5896 (PWY-5896)
         PWY-5897 (PWY-5897)
         PWY-5898 (PWY-5898)
         PWY-5899 (PWY-5899)
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         PWY-5861 (PWY-5861)
         PWY-5837 (1,4-dihydroxy-2-naphthoate biosynthesis I)

- EG11532 (menC) (b2261)
   Products of gene:
     - O-SUCCINYLBENZOATE-COA-SYN-MONOMER (o-succinylbenzoate synthase)
       Reactions:
        (1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate  ->  o-succinylbenzoate + H2O
         In pathways
         PWY-5850 (PWY-5850)
         PWY-5840 (PWY-5840)
         PWY-5845 (PWY-5845)
         PWY-5860 (PWY-5860)
         PWY-5862 (PWY-5862)
         PWY-5838 (superpathway of menaquinone-8 biosynthesis I)
         PWY-5896 (PWY-5896)
         PWY-5897 (PWY-5897)
         PWY-5898 (PWY-5898)
         PWY-5899 (PWY-5899)
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         PWY-5861 (PWY-5861)
         PWY-5863 (PWY-5863)
         PWY-5837 (1,4-dihydroxy-2-naphthoate biosynthesis I)
         PWY-5791 (PWY-5791)

- EG11368 (menB) (b2262)
   Products of gene:
     - NAPHTHOATE-SYN-MONOMER (MenB)
     - CPLX0-7882 (1,4-dihydroxy-2-naphthoyl-CoA synthase)
       Reactions:
        o-succinylbenzoyl-CoA + H+  ->  1,4-dihydroxy-2-naphthoyl-CoA + H2O
         In pathways
         PWY-5850 (PWY-5850)
         PWY-5840 (PWY-5840)
         PWY-5845 (PWY-5845)
         PWY-5860 (PWY-5860)
         PWY-5862 (PWY-5862)
         PWY-5838 (superpathway of menaquinone-8 biosynthesis I)
         PWY-5896 (PWY-5896)
         PWY-5897 (PWY-5897)
         PWY-5898 (PWY-5898)
         PWY-5899 (PWY-5899)
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         PWY-5861 (PWY-5861)
         PWY-5863 (PWY-5863)
         PWY-5837 (1,4-dihydroxy-2-naphthoate biosynthesis I)
         PWY-5791 (PWY-5791)

- EG10579 (menD) (b2264)
   Products of gene:
     - MEND-MONOMER (MenD)
     - CPLX0-7525 (2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase)
       Reactions:
        2-oxoglutarate + isochorismate + 2 H+  ->  2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate + CO2
         In pathways
         PWY-5850 (PWY-5850)
         PWY-5840 (PWY-5840)
         PWY-5845 (PWY-5845)
         PWY-5860 (PWY-5860)
         PWY-5862 (PWY-5862)
         PWY-5838 (superpathway of menaquinone-8 biosynthesis I)
         PWY-5896 (PWY-5896)
         PWY-5897 (PWY-5897)
         PWY-5898 (PWY-5898)
         PWY-5899 (PWY-5899)
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         PWY-5861 (PWY-5861)
         PWY-5863 (PWY-5863)
         PWY-5837 (1,4-dihydroxy-2-naphthoate biosynthesis I)
         PWY-5791 (PWY-5791)



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 187
Effective number of orgs (counting one per cluster within 468 clusters): 129

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TWHI218496 ncbi Tropheryma whipplei TW08/273
TWHI203267 ncbi Tropheryma whipplei Twist3
TTUR377629 ncbi Teredinibacter turnerae T79014
TROS309801 ncbi Thermomicrobium roseum DSM 51594
TFUS269800 ncbi Thermobifida fusca YX4
TELO197221 ncbi Thermosynechococcus elongatus BP-14
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
SSP94122 ncbi Shewanella sp. ANA-34
SSP84588 ncbi Synechococcus sp. WH 81024
SSP64471 ncbi Synechococcus sp. CC93113
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)3
SSP321327 ncbi Synechococcus sp. JA-3-3Ab4
SSP1131 Synechococcus sp. CC96054
SSON300269 ncbi Shigella sonnei Ss0464
SSED425104 ncbi Shewanella sediminis HAW-EB34
SRUB309807 ncbi Salinibacter ruber DSM 138554
SPRO399741 ncbi Serratia proteamaculans 5684
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-14
SMED366394 ncbi Sinorhizobium medicae WSM4193
SLOI323850 ncbi Shewanella loihica PV-44
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23384
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SELO269084 ncbi Synechococcus elongatus PCC 63014
SDYS300267 ncbi Shigella dysenteriae Sd1974
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
SACI56780 ncbi Syntrophus aciditrophicus SB4
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99414
RSP357808 ncbi Roseiflexus sp. RS-13
RSP101510 ncbi Rhodococcus jostii RHA14
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332094
RPAL316057 ncbi Rhodopseudomonas palustris BisB54
RPAL316056 ncbi Rhodopseudomonas palustris BisB183
RPAL316055 ncbi Rhodopseudomonas palustris BisA533
RPAL258594 ncbi Rhodopseudomonas palustris CGA0094
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38413
REUT381666 ncbi Ralstonia eutropha H163
REUT264198 ncbi Ralstonia eutropha JMP1343
RCAS383372 ncbi Roseiflexus castenholzii DSM 139413
PRUM264731 ncbi Prevotella ruminicola 233
PPRO298386 ncbi Photobacterium profundum SS93
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PMAR59920 ncbi Prochlorococcus marinus NATL2A4
PMAR167555 ncbi Prochlorococcus marinus NATL1A4
PLUT319225 ncbi Chlorobium luteolum DSM 2734
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 374
PACN267747 ncbi Propionibacterium acnes KPA1712023
OIHE221109 ncbi Oceanobacillus iheyensis HTE8313
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2553
NSP35761 Nocardioides sp.4
NSP103690 ncbi Nostoc sp. PCC 71203
NPHA348780 ncbi Natronomonas pharaonis DSM 21604
NFAR247156 ncbi Nocardia farcinica IFM 101524
MXAN246197 ncbi Myxococcus xanthus DK 16224
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-14
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra4
MTUB336982 ncbi Mycobacterium tuberculosis F114
MTBRV ncbi Mycobacterium tuberculosis H37Rv4
MTBCDC ncbi Mycobacterium tuberculosis CDC15514
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSP189918 ncbi Mycobacterium sp. KMS4
MSP164757 ncbi Mycobacterium sp. JLS4
MSP164756 ncbi Mycobacterium sp. MCS4
MSME246196 ncbi Mycobacterium smegmatis MC2 1554
MLEP272631 ncbi Mycobacterium leprae TN4
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK4
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P24
MBOV233413 ncbi Mycobacterium bovis AF2122/974
MAVI243243 ncbi Mycobacterium avium 1044
MAER449447 ncbi Microcystis aeruginosa NIES-8434
MABS561007 ncbi Mycobacterium abscessus ATCC 199774
LXYL281090 ncbi Leifsonia xyli xyli CTCB074
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53343
LSPH444177 ncbi Lysinibacillus sphaericus C3-413
LMON265669 ncbi Listeria monocytogenes 4b F23653
LMON169963 ncbi Listeria monocytogenes EGD-e3
LLAC272623 ncbi Lactococcus lactis lactis Il14033
LLAC272622 ncbi Lactococcus lactis cremoris SK113
LINN272626 ncbi Listeria innocua Clip112623
KRAD266940 ncbi Kineococcus radiotolerans SRS302164
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
HWAL362976 ncbi Haloquadratum walsbyi DSM 167903
HSP64091 ncbi Halobacterium sp. NRC-13
HSOM228400 ncbi Haemophilus somnus 23364
HSOM205914 ncbi Haemophilus somnus 129PT4
HSAL478009 ncbi Halobacterium salinarum R13
HMUK485914 ncbi Halomicrobium mukohataei DSM 122864
HMAR272569 ncbi Haloarcula marismortui ATCC 430494
HINF71421 ncbi Haemophilus influenzae Rd KW204
HINF374930 ncbi Haemophilus influenzae PittEE4
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HHAL349124 ncbi Halorhodospira halophila SL14
HDUC233412 ncbi Haemophilus ducreyi 35000HP4
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-24
GKAU235909 ncbi Geobacillus kaustophilus HTA4263
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
EFAE226185 ncbi Enterococcus faecalis V5833
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DPSY177439 ncbi Desulfotalea psychrophila LSv543
DHAF138119 ncbi Desulfitobacterium hafniense Y513
DARO159087 ncbi Dechloromonas aromatica RCB4
CTEP194439 ncbi Chlorobium tepidum TLS4
CSP78 Caulobacter sp.3
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE253
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3824
CMIC31964 ncbi Clavibacter michiganensis sepedonicus4
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334063
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130324
CEFF196164 ncbi Corynebacterium efficiens YS-3144
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131294
CCHL340177 ncbi Chlorobium chlorochromatii CaD34
BWEI315730 ncbi Bacillus weihenstephanensis KBAB43
BTHU412694 ncbi Bacillus thuringiensis Al Hakam4
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-274
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54823
BSUB ncbi Bacillus subtilis subtilis 1683
BPUM315750 ncbi Bacillus pumilus SAFR-0323
BLIC279010 ncbi Bacillus licheniformis ATCC 145803
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1103
BHAL272558 ncbi Bacillus halodurans C-1253
BFRA295405 ncbi Bacteroides fragilis YCH463
BFRA272559 ncbi Bacteroides fragilis NCTC 93433
BCER572264 ncbi Bacillus cereus 03BB1024
BCER405917 Bacillus cereus W3
BCER315749 ncbi Bacillus cytotoxicus NVH 391-984
BCER288681 ncbi Bacillus cereus E33L4
BCER226900 ncbi Bacillus cereus ATCC 145793
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1003
BANT592021 ncbi Bacillus anthracis A02483
BANT568206 ncbi Bacillus anthracis CDC 6843
BANT261594 ncbi Bacillus anthracis Ames Ancestor3
BANT260799 ncbi Bacillus anthracis Sterne3
AVAR240292 ncbi Anabaena variabilis ATCC 294134
ASP76114 ncbi Aromatoleum aromaticum EbN13
ASP1667 Arthrobacter sp.3
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AMAR329726 ncbi Acaryochloris marina MBIC110174
AHYD196024 Aeromonas hydrophila dhakensis4
AAUR290340 ncbi Arthrobacter aurescens TC13


Names of the homologs of the genes in the group in each of these orgs
  EG12437   EG11532   EG11368   EG10579   
YPSE349747 YPSIP31758_1486YPSIP31758_1485YPSIP31758_1484YPSIP31758_1482
YPSE273123 YPTB2556YPTB2557YPTB2558YPTB2560
YPES386656 YPDSF_1933YPDSF_1934YPDSF_1935YPDSF_1937
YPES377628 YPN_2118YPN_2119YPN_2120YPN_2122
YPES360102 YPA_2015YPA_2016YPA_2017YPA_2019
YPES349746 YPANGOLA_A1781YPANGOLA_A1782YPANGOLA_A1783YPANGOLA_A1785
YPES214092 YPO2523YPO2524YPO2525YPO2527
YPES187410 Y1664Y1663Y1662Y1660
YENT393305 YE1379YE1378YE1377YE1375
VVUL216895 VV1_3168VV1_3169VV1_3170VV1_3172
VVUL196600 VV1120VV1119VV1118VV1116
VPAR223926 VP0933VP0932VP0931VP0929
VFIS312309 VF1666VF1667VF1669VF1671
VCHO345073 VC0395_A1557VC0395_A1558VC0395_A1559VC0395_A1561
VCHO VC1971VC1972VC1973VC1975
TWHI218496 TW0111TW0110TW0071
TWHI203267 TW111TW110TW068
TTUR377629 TERTU_2724TERTU_2725TERTU_2726TERTU_2728
TROS309801 TRD_A0308TRD_A0306TRD_A0304TRD_A0261
TFUS269800 TFU_1408TFU_1410TFU_1409TFU_1411
TELO197221 TLL1221TLR1174TLL2458TLL0130
STYP99287 STM2305STM2306STM2307STM2309
SSP94122 SHEWANA3_3968SHEWANA3_3967SHEWANA3_4123SHEWANA3_3965
SSP84588 SYNW2305OR2556SYNW2306OR2555SYNW0998OR0030SYNW0997OR0029
SSP64471 GSYN2799GSYN1636GSYN1635
SSP321332 CYB_2428CYB_0565CYB_2045
SSP321327 CYA_2666CYA_1249CYA_0530CYA_0082
SSP1131 SYNCC9605_2436SYNCC9605_2437SYNCC9605_1123SYNCC9605_1122
SSON300269 SSO_2321SSO_2322SSO_2323SSO_2325
SSED425104 SSED_0223SSED_0224SSED_4478SSED_0226
SRUB309807 SRU_1355SRU_1354SRU_2766SRU_1351
SPRO399741 SPRO_3279SPRO_3280SPRO_3281SPRO_3283
SPEA398579 SPEA_3974SPEA_3973SPEA_4225SPEA_3971
SONE211586 SO_4576SO_4575SO_4739SO_4573
SMED366394 SMED_1438SMED_1555SMED_0749
SLOI323850 SHEW_3602SHEW_3601SHEW_3814SHEW_3599
SHIGELLA MENEMENCMENBMEND
SHAL458817 SHAL_0294SHAL_0295SHAL_4273SHAL_0297
SFLE373384 SFV_2331SFV_2332SFV_2333SFV_2335
SFLE198214 AAN43853.1AAN43854.1AAN43855.1AAN43857.1
SERY405948 SACE_6916SACE_0541SACE_6914SACE_6913
SENT454169 SEHA_C2545SEHA_C2546SEHA_C2547SEHA_C2549
SENT321314 SCH_2305SCH_2306SCH_2307SCH_2309
SENT295319 SPA0558SPA0557SPA0556SPA0554
SENT220341 STY2535STY2536STY2537STY2540
SENT209261 T0558T0557T0556T0554
SELO269084 SYC0525_CSYC0526_CSYC0926_DSYC0121_D
SDYS300267 SDY_2456SDY_2457SDY_2458SDY_2460
SBOY300268 SBO_2297SBO_2298SBO_2299SBO_2301
SBAL402882 SHEW185_4160SHEW185_4159SHEW185_4358SHEW185_4157
SBAL399599 SBAL195_4291SBAL195_4290SBAL195_4500SBAL195_4288
SACI56780 SYN_02620SYN_02619SYN_02400SYN_02399
RXYL266117 RXYL_2891RXYL_2892RXYL_2893RXYL_2896
RSP357808 ROSERS_3859ROSERS_0024ROSERS_0025
RSP101510 RHA1_RO02011RHA1_RO02001RHA1_RO02630RHA1_RO01997
RSAL288705 RSAL33209_2701RSAL33209_2644RSAL33209_2700RSAL33209_2643
RPAL316057 RPD_3808RPD_1635RPD_1542RPD_2098
RPAL316056 RPC_1451RPC_1033RPC_3255
RPAL316055 RPE_1780RPE_0612RPE_2187
RPAL258594 RPA0743RPA3964RPA0653RPA2031
RLEG216596 PRL120504PRL110025RL2442
REUT381666 H16_A2794H16_B1695H16_B1870
REUT264198 REUT_B3565REUT_C6107REUT_B3773
RCAS383372 RCAS_0559RCAS_4218RCAS_4217
PRUM264731 GFRORF1683GFRORF1684GFRORF1685
PPRO298386 PBPRA2621PBPRA2622PBPRA2624
PMUL272843 PM0357PM1094PM1096PM0054
PMAR59920 PMN2A_1542PMN2A_1543PMN2A_0044PMN2A_0043
PMAR167555 NATL1_02491NATL1_02501NATL1_06641NATL1_06631
PLUT319225 PLUT_0326PLUT_0327PLUT_0328PLUT_0331
PLUM243265 PLU3069PLU3070PLU3071PLU3073
PING357804 PING_0189PING_0190PING_0350PING_0352
PACN267747 PPA0902PPA0907PPA0903
OIHE221109 OB2666OB2323OB2325
NWIN323098 NWI_0617NWI_2252NWI_2343
NSP35761 NOCA_0508NOCA_0509NOCA_4299NOCA_0510
NSP103690 ALR0034ALL2347ALR0312
NPHA348780 NP2738ANP2736ANP2730ANP2726A
NFAR247156 NFA51420NFA55430NFA51380NFA51330
MXAN246197 MXAN_3532MXAN_3531MXAN_3154MXAN_3528
MVAN350058 MVAN_0937MVAN_0971MVAN_0947MVAN_0975
MTUB419947 MRA_0549MRA_0560MRA_0555MRA_0562
MTUB336982 TBFG_10553TBFG_10563TBFG_10559TBFG_10565
MTBRV RV0542CRV0553RV0548CRV0555
MTBCDC MT0567MT0579MT0573MT0581
MSUC221988 MS0864MS1791MS1792MS1794
MSP189918 MKMS_0740MKMS_0758MKMS_0749MKMS_0765
MSP164757 MJLS_0720MJLS_0738MJLS_0729MJLS_0745
MSP164756 MMCS_0726MMCS_0744MMCS_0735MMCS_0751
MSME246196 MSMEG_1062MSMEG_1103MSMEG_1075MSMEG_1109
MLEP272631 ML2257ML2268ML2263ML2270
MGIL350054 MFLV_0033MFLV_5268MFLV_0025MFLV_5263
MBOV410289 BCG_0586CBCG_0598BCG_0592CBCG_0600
MBOV233413 MB0556CMB0568MB0562CMB0570
MAVI243243 MAV_3523MAV_4590MAV_4596MAV_4588
MAER449447 MAE_58410MAE_58420MAE_45860MAE_26640
MABS561007 MAB_3952MAB_3935CMAB_3945MAB_3933C
LXYL281090 LXX01450LXX01430LXX01440LXX01490
LWEL386043 LWE1690LWE1691LWE1693
LSPH444177 BSPH_4273BSPH_4275BSPH_4277
LMON265669 LMOF2365_1696LMOF2365_1697LMOF2365_1699
LMON169963 LMO1672LMO1673LMO1675
LLAC272623 L0172L0171L0169
LLAC272622 LACR_0770LACR_0771LACR_0773
LINN272626 LIN1780LIN1781LIN1783
KRAD266940 KRAD_0637KRAD_0643KRAD_0641KRAD_0646
KPNE272620 GKPORF_B1962GKPORF_B1963GKPORF_B1964GKPORF_B1966
HWAL362976 HQ1876AHQ1874AHQ1873A
HSP64091 VNG1074GVNG1079GVNG1081G
HSOM228400 HSM_0356HSM_1611HSM_1612HSM_0968
HSOM205914 HS_1207HS_0563HS_0562HS_0617
HSAL478009 OE2558ROE2561ROE2563R
HMUK485914 HMUK_0125HMUK_1379HMUK_2252HMUK_2535
HMAR272569 RRNAC1977RRNAC0844RRNAC0841RRNAC0838
HINF71421 HI_0194HI_0969HI_0968HI_0283
HINF374930 CGSHIEE_02280CGSHIEE_07115CGSHIEE_07120CGSHIEE_01640
HINF281310 NTHI0290NTHI1142NTHI1141NTHI0392
HHAL349124 HHAL_1131HHAL_1130HHAL_1129HHAL_1127
HDUC233412 HD_1271HD_1055HD_1925HD_1853
GTHE420246 GTNG_2770GTNG_3181GTNG_2771GTNG_2773
GKAU235909 GK1315GK2873GK2875
ESP42895 ENT638_2810ENT638_2811ENT638_2812ENT638_2814
EFER585054 EFER_0908EFER_0907EFER_0906EFER_0904
EFAE226185 EF_1511EF_0445EF_0448
ECOO157 MENEMENCMENBMEND
ECOL83334 ECS3148ECS3149ECS3150ECS3152
ECOL585397 ECED1_2728ECED1_2729ECED1_2730ECED1_2732
ECOL585057 ECIAI39_2408ECIAI39_2409ECIAI39_2410ECIAI39_2412
ECOL585056 ECUMN_2603ECUMN_2604ECUMN_2605ECUMN_2607
ECOL585055 EC55989_2508EC55989_2509EC55989_2510EC55989_2512
ECOL585035 ECS88_2411ECS88_2412ECS88_2413ECS88_2415
ECOL585034 ECIAI1_2338ECIAI1_2339ECIAI1_2340ECIAI1_2342
ECOL481805 ECOLC_1388ECOLC_1387ECOLC_1386ECOLC_1384
ECOL469008 ECBD_1398ECBD_1397ECBD_1396ECBD_1394
ECOL439855 ECSMS35_2415ECSMS35_2416ECSMS35_2417ECSMS35_2419
ECOL413997 ECB_02187ECB_02188ECB_02189ECB_02191
ECOL409438 ECSE_2520ECSE_2521ECSE_2522ECSE_2524
ECOL405955 APECO1_4301APECO1_4300APECO1_4299APECO1_4297
ECOL364106 UTI89_C2543UTI89_C2544UTI89_C2545UTI89_C2548
ECOL362663 ECP_2304ECP_2305ECP_2306ECP_2308
ECOL331111 ECE24377A_2556ECE24377A_2557ECE24377A_2558ECE24377A_2560
ECOL316407 ECK2254:JW2255:B2260ECK2255:JW2256:B2261ECK2256:JW2257:B2262ECK2258:JW5374:B2264
ECOL199310 C2803C2804C2805C2808
ECAR218491 ECA1215ECA1214ECA1213ECA1211
DPSY177439 DP0251DP0252DP0253
DHAF138119 DSY0521DSY0520DSY0518
DARO159087 DARO_2822DARO_1615DARO_1616DARO_2345
CTEP194439 CT_1848CT_1847CT_1846CT_1839
CSP78 CAUL_0579CAUL_5078CAUL_3351
CPRO264201 PC1663PC1064PC1068
CMIC443906 CMM_0577CMM_0573CMM_0576CMM_2812
CMIC31964 CMS2585CMS2583CMS2584CMS3017
CHUT269798 CHU_2415CHU_1897CHU_1759
CGLU196627 CG0533CG0551CG0548CG0552
CEFF196164 CE0471CE0477CE2780CE0478
CDIP257309 DIP0420DIP0422DIP0421DIP0423
CCHL340177 CAG_1672CAG_1718CAG_1719CAG_1700
BWEI315730 BCERKBAB4_0779BCERKBAB4_4695BCERKBAB4_4697
BTHU412694 BALH_0790BALH_2558BALH_4419BALH_4421
BTHU281309 BT9727_0778BT9727_2610BT9727_4586BT9727_4588
BTHE226186 BT_3550BT_4702BT_4701
BSUB BSU30790BSU30800BSU30820
BPUM315750 BPUM_2715BPUM_2716BPUM_2718
BLIC279010 BL01987BL02406BL02408
BJAP224911 BLL2948BLL6043BLL6503
BHAL272558 BH2006BH3006BH1996
BFRA295405 BF0373BF1318BF1316
BFRA272559 BF0320BF1303BF1301
BCER572264 BCA_0929BCA_2931BCA_4989BCA_4991
BCER405917 BCE_0965BCE_5013BCE_5015
BCER315749 BCER98_0707BCER98_1937BCER98_3491BCER98_3493
BCER288681 BCE33L0779BCE33L2578BCE33L4608BCE33L4610
BCER226900 BC_0890BC_4853BC_4855
BBAC264462 BD0279BD3492BD3484
BANT592021 BAA_0981BAA_5121BAA_5123
BANT568206 BAMEG_3684BAMEG_5143BAMEG_5145
BANT261594 GBAA0876GBAA5109GBAA5111
BANT260799 BAS0832BAS4748BAS4750
AVAR240292 AVA_2636AVA_2635AVA_0166AVA_4706
ASP76114 EBA3433EBA1954EBA4751
ASP1667 ARTH_3284ARTH_3283ARTH_3138
ASAL382245 ASA_3733ASA_3734ASA_3735ASA_3737
APLE434271 APJL_0752APJL_0369APJL_1860APJL_1785
APLE416269 APL_0751APL_0353APL_1824APL_1750
AMAR329726 AM1_3754AM1_3753AM1_5258AM1_1108
AHYD196024 AHA_0527AHA_0528AHA_0529AHA_0531
AAUR290340 AAUR_3115AAUR_3275AAUR_3107


Organism features enriched in list (features available for 179 out of the 187 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Singles 5.542e-6112286
Disease:Anthrax 0.008680944
Disease:Bubonic_plague 0.000789866
Disease:Dysentery 0.000789866
Disease:Gastroenteritis 0.00007141113
Disease:Urinary_tract_infection 0.008680944
GC_Content_Range4:0-40 2.187e-1131213
GC_Content_Range4:40-60 5.860e-9100224
GC_Content_Range7:30-40 0.000020731166
GC_Content_Range7:40-50 0.002515348117
GC_Content_Range7:50-60 8.059e-652107
Genome_Size_Range5:0-2 6.240e-198155
Genome_Size_Range5:4-6 9.310e-19103184
Genome_Size_Range9:0-1 0.0029605227
Genome_Size_Range9:1-2 7.292e-166128
Genome_Size_Range9:4-5 7.354e-64896
Genome_Size_Range9:5-6 1.413e-115588
Gram_Stain:Gram_Pos 0.006763157150
Habitat:Host-associated 0.007983652206
Habitat:Multiple 0.006891166178
Motility:Yes 0.000662299267
Oxygen_Req:Anaerobic 0.000029415102
Oxygen_Req:Facultative 4.268e-14102201
Salinity:Extreme_halophilic 0.000236877
Shape:Coccus 0.00001971082
Shape:Rod 2.264e-17151347
Shape:Sphere 0.0072547119
Shape:Spiral 0.0000403134



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 331
Effective number of orgs (counting one per cluster within 468 clusters): 263

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A1
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110181
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103311
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae1
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-101
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80041
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339131
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3061
XAUT78245 ncbi Xanthobacter autotrophicus Py21
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB271
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.1
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332231
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 51
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen1
STRO369723 ncbi Salinispora tropica CNB-4400
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE292459 ncbi Symbiobacterium thermophilum IAM 148631
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP644076 Silicibacter sp. TrichCH4B0
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP292414 ncbi Ruegeria sp. TM10401
SSOL273057 ncbi Sulfolobus solfataricus P20
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMEL266834 ncbi Sinorhizobium meliloti 10211
SMAR399550 ncbi Staphylothermus marinus F10
SGOR29390 Streptococcus gordonii Challis0
SGLO343509 ncbi Sodalis glossinidius morsitans0
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB1
SDEN318161 ncbi Shewanella denitrificans OS2170
SDEG203122 ncbi Saccharophagus degradans 2-400
SCO ncbi Streptomyces coelicolor A3(2)1
SALA317655 ncbi Sphingopyxis alaskensis RB22561
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.11
RSOL267608 ncbi Ralstonia solanacearum GMI10001
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111701
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-31
RMAS416276 ncbi Rickettsia massiliae MTU50
RFER338969 ncbi Rhodoferax ferrireducens T1181
RFEL315456 ncbi Rickettsia felis URRWXCal20
RETL347834 ncbi Rhizobium etli CFN 421
RDEN375451 ncbi Roseobacter denitrificans OCh 1140
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30000
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a0
PSTU379731 ncbi Pseudomonas stutzeri A15011
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-11
PSP117 Pirellula sp.0
PPUT76869 ncbi Pseudomonas putida GB-11
PPUT351746 ncbi Pseudomonas putida F11
PPUT160488 ncbi Pseudomonas putida KT24401
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMOB403833 ncbi Petrotoga mobilis SJ950
PMEN399739 ncbi Pseudomonas mendocina ymp1
PISL384616 ncbi Pyrobaculum islandicum DSM 41841
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PFLU220664 ncbi Pseudomonas fluorescens Pf-51
PFLU216595 ncbi Pseudomonas fluorescens SBW250
PFLU205922 ncbi Pseudomonas fluorescens Pf0-10
PENT384676 ncbi Pseudomonas entomophila L480
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PATL342610 ncbi Pseudoalteromonas atlantica T6c1
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
PARC259536 ncbi Psychrobacter arcticus 273-40
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OANT439375 ncbi Ochrobactrum anthropi ATCC 491880
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X141
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NEUT335283 ncbi Nitrosomonas eutropha C911
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124441
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390731
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP400668 ncbi Marinomonas sp. MWYL10
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM10
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR394221 ncbi Maricaulis maris MCS101
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath1
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT81
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
LACI272621 ncbi Lactobacillus acidophilus NCFM0
JSP375286 ncbi Janthinobacterium sp. Marseille0
JSP290400 ncbi Jannaschia sp. CCS11
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium1
HMOD498761 ncbi Heliobacterium modesticaldum Ice11
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HCHE349521 ncbi Hahella chejuensis KCTC 23960
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237791
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GURA351605 ncbi Geobacter uraniireducens Rf41
GSUL243231 ncbi Geobacter sulfurreducens PCA1
GOXY290633 ncbi Gluconobacter oxydans 621H0
GMET269799 ncbi Geobacter metallireducens GS-151
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250171
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough1
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DRED349161 ncbi Desulfotomaculum reducens MI-11
DRAD243230 ncbi Deinococcus radiodurans R11
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G201
CVIO243365 ncbi Chromobacterium violaceum ATCC 124720
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E881
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP501479 Citreicella sp. SE451
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1011
CPER195103 ncbi Clostridium perfringens ATCC 131241
CPER195102 ncbi Clostridium perfringens 131
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CNOV386415 ncbi Clostridium novyi NT1
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJAP155077 Cellvibrio japonicus0
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CDIF272563 ncbi Clostridium difficile 6301
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80521
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BSUI470137 ncbi Brucella suis ATCC 234450
BSUI204722 ncbi Brucella suis 13300
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPER257313 ncbi Bordetella pertussis Tohama I1
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23080
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M1
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BCIC186490 Candidatus Baumannia cicadellinicola0
BCAN483179 ncbi Brucella canis ATCC 233650
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAMB398577 ncbi Burkholderia ambifaria MC40-60
BAMB339670 ncbi Burkholderia ambifaria AMMD1
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9410
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K11
AORE350688 ncbi Alkaliphilus oremlandii OhILAs1
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-11
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK21
ABAU360910 ncbi Bordetella avium 197N1
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3451
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  EG12437   EG11532   EG11368   EG10579   
ZMOB264203
XORY360094 XOOORF_2148
XORY342109 XOO2323
XORY291331 XOO2452
XFAS405440
XFAS183190
XFAS160492
XCAM487884 XCC-B100_2726
XCAM316273 XCAORF_1808
XCAM314565 XC_2700
XCAM190485 XCC1534
XAXO190486 XAC1584
XAUT78245 XAUT_0912
WSUC273121
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TVOL273116
TTHE300852
TTHE262724 TT_C0342
TSP28240
TSP1755 TETH514_1062
TPSE340099 TETH39_0579
TPET390874
TPEN368408 TPEN_1837
TPAL243276
TMAR243274
TLET416591
TKOD69014
TDEN326298
TDEN243275
TCRU317025
TACI273075
SWOL335541 SWOL_2031
STRO369723
STHE322159
STHE299768
STHE292459 STH212
STHE264199
SSUI391296
SSUI391295
SSP644076
SSP387093
SSP292414 TM1040_1170
SSOL273057
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMEL266834 SMC02263
SMAR399550
SGOR29390
SGLO343509
SFUM335543 SFUM_3584
SDEN318161
SDEG203122
SCO SCO4006
SALA317655 SALA_1865
SAGA211110
SAGA208435
SAGA205921
RTYP257363
RSPH272943 RSP_1340
RSOL267608 RSC2872
RRUB269796 RRU_A3801
RRIC452659
RRIC392021
RPRO272947
RPOM246200 SPO_0677
RMAS416276
RFER338969 RFER_3898
RFEL315456
RETL347834 RHE_CH02790
RDEN375451
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PSYR223283
PSYR205918
PSTU379731 PST_1925
PSP56811
PSP312153 PNUC_1558
PSP117
PPUT76869 PPUTGB1_2369
PPUT351746 PPUT_2221
PPUT160488 PP_2795
PPEN278197
PMOB403833
PMEN399739 PMEN_3817
PISL384616 PISL_0554
PHOR70601
PHAL326442
PFUR186497
PFLU220664 PFL_2162
PFLU216595
PFLU205922
PENT384676
PCRY335284
PCAR338963
PATL342610 PATL_0624
PAST100379
PARS340102 PARS_1724
PARC259536
PABY272844
OTSU357244
OANT439375
NSP387092
NSEN222891
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097 NHAM_2722
NGON242231
NEUT335283 NEUT_0702
NEUR228410
NARO279238 SARO_1211
MTHE349307
MTHE264732 MOTH_0503
MTHE187420 MTH476
MSYN262723
MSTA339860
MSP400668
MPUL272635
MPNE272634
MPET420662
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368 MMARC7_1674
MMAR402880 MMARC5_0954
MMAR394221 MMAR10_2654
MMAR368407
MMAR267377
MLAB410358
MKAN190192 MK0531
MJAN243232 MJ_0277
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MFLA265072
MEXT419610
MCAP340047
MCAP243233 MCA_1006
MBUR259564
MBAR269797
MART243272
MAQU351348 MAQU_2093
MAEO419665
MACE188937
LSAK314315
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LPLA220668
LJOH257314
LINT363253 LI0807
LINT267671
LINT189518
LHEL405566
LGAS324831
LDEL390333 LDB1742
LDEL321956 LBUL_1615
LCAS321967 LSEI_2772
LBOR355277
LBOR355276
LBIF456481 LEPBI_I0792
LBIF355278 LBF_0766
LACI272621
JSP375286
JSP290400 JANN_4211
ILOI283942
IHOS453591
HPYL85963
HPYL357544
HPY
HNEP81032 HNE_2443
HMOD498761 HM1_0893
HHEP235279
HCHE349521
HBUT415426 HBUT_0684
HAUR316274 HAUR_4351
HARS204773
HACI382638
GVIO251221
GURA351605 GURA_3041
GSUL243231 GSU_1377
GOXY290633
GMET269799 GMET_2224
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855 FRANEAN1_4529
FSP106370
FRANT
FPHI484022 FPHI_1647
FNUC190304
FNOD381764
FMAG334413
FALN326424 FRAAL3400
ERUM302409
ERUM254945
ELIT314225
ECHA205920
ECAN269484
DVUL882 DVU_0360
DSP255470
DSP216389
DSHI398580
DRED349161 DRED_1492
DRAD243230 DR_1151
DOLE96561
DNOD246195
DETH243164
DDES207559 DDE_0398
CVIO243365
CVES412965
CTRA471473
CTRA471472
CTET212717 CTC_00479
CSUL444179
CSP501479 CSE45_0700
CRUT413404
CPSY167879
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPER289380 CPR_2287
CPER195103 CPF_2585
CPER195102 CPE2301
CPEL335992 SAR11_0003
CNOV386415 NT01CX_0474
CMUR243161
CMET456442
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJAP155077
CHOM360107
CFET360106
CFEL264202
CDIF272563 CD0800
CDES477974
CCUR360105
CCON360104
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBLO291272
CBLO203907
CBEI290402 CBEI_0321
CACE272562 CAC2712
CABO218497
BTUR314724
BTRI382640
BSUI470137
BSUI204722
BSP107806
BQUI283165
BPER257313 BP3277
BOVI236
BMEL359391
BMEL224914 BMEI1945
BLON206672 BL0231
BHER314723
BHEN283166
BGAR290434
BCIC186490
BCAN483179
BBUR224326
BBAC360095
BAPH372461
BAPH198804
BAMB398577
BAMB339670 BAMB_6506
BAFZ390236
BABO262698
AYEL322098
AURANTIMONAS
APHA212042
APER272557 APE0396
AORE350688 CLOS_0165
AMAR234826
ALAI441768
AFER243159
AEHR187272 MLG_1601
ACEL351607
ABUT367737
ABOR393595 ABO_2748
ABAU360910 BAV3222
ABAC204669 ACID345_1213
AAEO224324


Organism features enriched in list (features available for 309 out of the 331 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.0000413117
Arrangment:Pairs 0.000047741112
Arrangment:Singles 0.0074980139286
Disease:Gastroenteritis 0.0050394213
Disease:Pharyngitis 0.005964788
Disease:Wide_range_of_infections 0.00085161111
Disease:bronchitis_and_pneumonitis 0.005964788
Endospores:Yes 0.00025621653
GC_Content_Range4:0-40 8.464e-8143213
GC_Content_Range4:60-100 0.000054457145
GC_Content_Range7:0-30 1.326e-64047
GC_Content_Range7:30-40 0.0016066103166
GC_Content_Range7:60-70 0.000284954134
Genome_Size_Range5:0-2 1.959e-29139155
Genome_Size_Range5:4-6 1.818e-1652184
Genome_Size_Range5:6-10 0.00127781547
Genome_Size_Range9:0-1 6.721e-62527
Genome_Size_Range9:1-2 1.582e-22114128
Genome_Size_Range9:4-5 1.519e-63096
Genome_Size_Range9:5-6 5.474e-92288
Gram_Stain:Gram_Pos 0.000039359150
Habitat:Host-associated 0.0003288128206
Habitat:Multiple 0.008952983178
Habitat:Terrestrial 0.00892791031
Optimal_temp.:30-37 0.0000200118
Oxygen_Req:Anaerobic 0.000034972102
Oxygen_Req:Facultative 8.142e-1072201
Oxygen_Req:Microaerophilic 0.00565861518
Shape:Irregular_coccus 0.00026421617
Shape:Rod 1.925e-11145347
Shape:Sphere 0.00007901819
Shape:Spiral 9.394e-83234
Temp._range:Mesophilic 0.0064351240473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY-5837 (1,4-dihydroxy-2-naphthoate biosynthesis I)2281710.7457
PWY-6406 (salicylate biosynthesis I)1881430.6605
PWY-5852 (demethylmenaquinone-8 biosynthesis I)1671290.6236
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50500.4511



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11532   EG11368   EG10579   
EG124370.9996090.999430.999403
EG115320.9995190.999503
EG113680.999759
EG10579



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PAIRWISE BLAST SCORES:

  EG12437   EG11532   EG11368   EG10579   
EG124370.0f0---
EG11532-0.0f0--
EG11368--0.0f0-
EG10579---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- PWY-5838 (superpathway of menaquinone-8 biosynthesis I) (degree of match pw to cand: 0.400, degree of match cand to pw: 1.000, average score: 0.816)
  Genes in pathway or complex:
             0.9788 0.9466 EG10017 (ispB) OPPSYN-MONOMER (IspB)
             0.2757 0.1506 EG11110 (ybgC) EG11110-MONOMER (esterase/thioesterase)
   *in cand* 0.9997 0.9994 EG11368 (menB) NAPHTHOATE-SYN-MONOMER (MenB)
             0.9995 0.9993 EG12438 (menH) EG12438-MONOMER ((1R,6R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase)
   *in cand* 0.9997 0.9994 EG10579 (menD) MEND-MONOMER (MenD)
             0.9994 0.9993 EG12362 (menF) MENF-MONOMER (MenF)
   *in cand* 0.9997 0.9995 EG11532 (menC) O-SUCCINYLBENZOATE-COA-SYN-MONOMER (o-succinylbenzoate synthase)
   *in cand* 0.9996 0.9994 EG12437 (menE) O-SUCCINYLBENZOATE-COA-LIG-MONOMER (MenE)
             0.9937 0.9866 EG11473 (ubiE) 2-OCTAPRENYL-METHOXY-BENZOQ-METH-MONOMER (bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase and S-adenosylmethionine:2-DMK methyltransferase)
             0.9985 0.9978 EG11880 (menA) DMK-MONOMER (1,4-dihydroxy-2-naphthoate octaprenyltransferase)
  All candidate genes found in this pathway

- PWY-5837 (1,4-dihydroxy-2-naphthoate biosynthesis I) (degree of match pw to cand: 0.571, degree of match cand to pw: 1.000, average score: 0.784)
  Genes in pathway or complex:
   *in cand* 0.9996 0.9994 EG12437 (menE) O-SUCCINYLBENZOATE-COA-LIG-MONOMER (MenE)
   *in cand* 0.9997 0.9995 EG11532 (menC) O-SUCCINYLBENZOATE-COA-SYN-MONOMER (o-succinylbenzoate synthase)
             0.9994 0.9993 EG12362 (menF) MENF-MONOMER (MenF)
   *in cand* 0.9997 0.9994 EG10579 (menD) MEND-MONOMER (MenD)
             0.9995 0.9993 EG12438 (menH) EG12438-MONOMER ((1R,6R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase)
   *in cand* 0.9997 0.9994 EG11368 (menB) NAPHTHOATE-SYN-MONOMER (MenB)
             0.2757 0.1506 EG11110 (ybgC) EG11110-MONOMER (esterase/thioesterase)
  All candidate genes found in this pathway

- ALL-CHORISMATE-PWY (superpathway of chorismate) (degree of match pw to cand: 0.070, degree of match cand to pw: 1.000, average score: 0.580)
  Genes in pathway or complex:
             0.8477 0.7621 EG10799 (purN) GART-MONOMER (phosphoribosylglycinamide formyltransferase 1)
             0.8731 0.7591 EG11375 (folE) GTP-CYCLOHYDRO-I-MONOMER (GTP cyclohydrolase I monomer)
             0.6743 0.5185 EG11138 (nudB) H2NEOPTERINP3PYROPHOSPHOHYDRO-MONOMER (dihydroneopterin triphosphate pyrophosphohydrolase)
             0.4459 0.1428 EG11673 (folB) H2NEOPTERINALDOL-MONOMER (FolB)
             0.2710 0.2112 EG11374 (folK) H2PTERIDINEPYROPHOSPHOKIN-MONOMER (6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase)
             0.6897 0.5351 G6862 (folM) G6862-MONOMER (dihydromonapterin reductase / dihydrofolate reductase)
             0.3705 0.0962 EG10326 (folA) DIHYDROFOLATEREDUCT-MONOMER (dihydrofolate reductase)
             0.9336 0.9135 EG10327 (folC) FOLC-MONOMER (bifunctional folypolyglutamate synthetase / dihydrofolate synthetase)
             0.6219 0.3737 EG10328 (folD) FOLD-MONOMER (FolD)
             0.6857 0.5327 EG10682 (pabA) PABASYN-COMPII-MONOMER (PabA)
             0.3492 0.2389 EG10683 (pabB) PABASYN-COMPI-MONOMER (PabB)
             0.4703 0.2994 EG50011 (folP) H2PTEROATESYNTH-MONOMER (FolP)
             0.7807 0.6247 EG11493 (pabC) ADCLY-MONOMER (pabC)
             0.3655 0.2940 EG11369 (ubiC) CHORPYRLY-MONOMER (chorismate lyase)
             0.4715 0.2123 EG11370 (ubiA) 4OHBENZOATE-OCTAPRENYLTRANSFER-MONOMER (4-hydroxybenzoate octaprenyltransferase)
             0.9604 0.9079 EG11044 (ubiX) UBIX-MONOMER (3-octaprenyl-4-hydroxybenzoate decarboxylase together with UbiG)
             0.3851 0.0743 EG11396 (ubiD) EG11396-MONOMER (3-octaprenyl-4-hydroxybenzoate carboxy-lyase monomer)
             0.5571 0.3725 EG11476 (ubiB) 2-OCTAPRENYLPHENOL-HYDROX-MONOMER (2-octaprenylphenol hydroxylase)
             0.9765 0.9574 EG11143 (ubiG) DHHB-METHYLTRANSFER-MONOMER (UbiG)
             0.4591 0.1988 EG11324 (ubiH) OCTAPRENYL-METHOXYPHENOL-OH-MONOMER (2-octaprenyl-6-methoxyphenol hydroxylase)
             0.3630 0.1106 G6365 (ubiF) OCTAPRENYL-METHYL-METHOXY-BENZOQ-OH-MON (2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone hydroxylase)
             0.1454 0.1042 EG11040 (tyrB) TYRB-MONOMER (TyrB)
             0.2967 0.1700 EG10096 (aspC) ASPAMINOTRANS-MONOMER (AspC)
             0.6187 0.3596 EG10707 (pheA) CHORISMUTPREPHENDEHYDRAT-MONOMER (PheA)
             0.6043 0.4776 EG11039 (tyrA) CHORISMUTPREPHENDEHYDROG-MONOMER (TyrA)
             0.4021 0.2378 EG10497 (ilvE) BRANCHED-CHAINAMINOTRANSFER-MONOMER (IlvE)
             0.3879 0.1867 EG11026 (trpC) PRAI-IGPS (indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase)
             0.5236 0.2734 EG11027 (trpD) ANTHRANSYNCOMPII-MONOMER (anthranilate synthase component II)
             0.3597 0.1764 EG11028 (trpE) ANTHRANSYNCOMPI-MONOMER (anthranilate synthase component I)
             0.5268 0.3049 EG11024 (trpA) TRYPSYN-APROTEIN (tryptophan synthase, α subunit)
             0.4320 0.1257 EG11025 (trpB) TRYPSYN-BPROTEIN (tryptophan synthase, β subunit)
             0.9525 0.8856 EG10075 (aroC) AROC-MONOMER (AroC)
             0.7574 0.3891 EG10073 (aroA) AROA-MONOMER (3-phosphoshikimate-1-carboxyvinyltransferase)
             0.4372 0.2283 EG10082 (aroL) AROL-MONOMER (shikimate kinase II)
             0.3222 0.1119 EG10081 (aroK) AROK-MONOMER (shikimate kinase I)
             0.6341 0.3944 EG10077 (aroE) AROE-MONOMER (shikimate dehydrogenase)
             0.3908 0.3002 EG10076 (aroD) AROD-MONOMER (AroD)
             0.4243 0.1835 EG10074 (aroB) AROB-MONOMER (3-dehydroquinate synthase)
             0.2470 0.1061 EG10079 (aroG) AROG-MONOMER (AroG)
             0.4524 0.2402 EG10080 (aroH) AROH-MONOMER (AroH)
             0.7036 0.5925 EG10078 (aroF) AROF-MONOMER (AroF)
             0.4810 0.1817 EG11234 (ydiB) EG11234-MONOMER (YdiB)
             0.9987 0.9982 EG10261 (entC) ENTC-MONOMER (isochorismate synthase 1)
             0.5458 0.3432 EG10259 (entA) ENTA-MONOMER (EntA)
             0.5865 0.1770 EG10263 (entE) ENTE-MONOMER (EntE)
             0.7248 0.5854 EG10264 (entF) ENTF-PANT (aryl carrier protein / serine activating enzyme)
             0.1354 0.0793 EG10262 (entD) ENTD-MONOMER (phosphopantetheinyl transferase)
             0.1948 0.0501 EG10260 (entB) ENTB-MONOMER (EntB)
             0.2757 0.1506 EG11110 (ybgC) EG11110-MONOMER (esterase/thioesterase)
   *in cand* 0.9997 0.9994 EG11368 (menB) NAPHTHOATE-SYN-MONOMER (MenB)
             0.9995 0.9993 EG12438 (menH) EG12438-MONOMER ((1R,6R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase)
   *in cand* 0.9997 0.9994 EG10579 (menD) MEND-MONOMER (MenD)
             0.9994 0.9993 EG12362 (menF) MENF-MONOMER (MenF)
   *in cand* 0.9997 0.9995 EG11532 (menC) O-SUCCINYLBENZOATE-COA-SYN-MONOMER (o-succinylbenzoate synthase)
   *in cand* 0.9996 0.9994 EG12437 (menE) O-SUCCINYLBENZOATE-COA-LIG-MONOMER (MenE)
             0.9985 0.9978 EG11880 (menA) DMK-MONOMER (1,4-dihydroxy-2-naphthoate octaprenyltransferase)
             0.9937 0.9866 EG11473 (ubiE) 2-OCTAPRENYL-METHOXY-BENZOQ-METH-MONOMER (bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase and S-adenosylmethionine:2-DMK methyltransferase)
  All candidate genes found in this pathway
   This pathway has holes



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10579 EG11368 EG11532 EG12437 (centered at EG11368)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG12437   EG11532   EG11368   EG10579   
257/623161/623320/623257/623
AAUR290340:2:Tyes-71670
AAVE397945:0:Tyes2240-0-
ABAC204669:0:Tyes--0-
ABAU360910:0:Tyes--0-
ABOR393595:0:Tyes0---
ACAU438753:0:Tyes2098-0-
ACRY349163:8:Tyes0-254-
ADEH290397:0:Tyes--0335
AEHR187272:0:Tyes0---
AFUL224325:0:Tyes316-0-
AHYD196024:0:Tyes0124
AMAR329726:9:Tyes2622262141150
AMET293826:0:Tyes-0-2881
ANAE240017:0:Tyes--190
AORE350688:0:Tyes--0-
APER272557:0:Tyes0---
APLE416269:0:Tyes395015121437
APLE434271:0:Tno358015131435
ASAL382245:5:Tyes0124
ASP1667:3:Tyes144-1430
ASP232721:2:Tyes0-2879-
ASP62928:0:Tyes--0255
ASP62977:0:Tyes-0232-
ASP76114:2:Tyes870-01641
AVAR240292:3:Tyes2482248104556
BAMB339670:1:Tno0---
BAMY326423:0:Tyes--02
BANT260799:0:Tno0-38873889
BANT261594:2:Tno0-38923894
BANT568206:2:Tyes0-13921394
BANT592021:2:Tno0-40954097
BBAC264462:0:Tyes0-29722964
BBRO257310:0:Tyes0-3652-
BCEN331271:1:Tno0---
BCEN331271:2:Tno--0-
BCEN331272:1:Tyes--0-
BCEN331272:2:Tyes0---
BCER226900:1:Tyes0-38823884
BCER288681:0:Tno0178538043806
BCER315749:1:Tyes0116926452647
BCER405917:1:Tyes0-38283830
BCER572264:1:Tno0198440134015
BCLA66692:0:Tyes--01152
BFRA272559:1:Tyes0-925923
BFRA295405:0:Tno0-959957
BHAL272558:0:Tyes1010220-
BJAP224911:0:Fyes0-31163577
BLIC279010:0:Tyes0-10501052
BLON206672:0:Tyes---0
BMAL243160:0:Tno--0-
BMAL243160:1:Tno0---
BMAL320388:0:Tno--0-
BMAL320388:1:Tno0---
BMAL320389:0:Tyes--0-
BMAL320389:1:Tyes0---
BMEL224914:1:Tno--0-
BPAR257311:0:Tno0-3093-
BPER257313:0:Tyes--0-
BPET94624:0:Tyes3139-0-
BPSE272560:1:Tyes0-2191-
BPSE320372:1:Tno0-2591-
BPSE320373:1:Tno0-2532-
BPUM315750:0:Tyes0-13
BSP36773:0:Tyes568--0
BSP376:0:Tyes0--3417
BSUB:0:Tyes0-13
BTHA271848:0:Tno0---
BTHA271848:1:Tno--0-
BTHE226186:0:Tyes0-11691168
BTHU281309:1:Tno0181337763778
BTHU412694:1:Tno0168034543456
BVIE269482:6:Tyes828-0-
BWEI315730:4:Tyes0-38143816
BXEN266265:0:Tyes0-239-
CACE272562:1:Tyes--0-
CAULO:0:Tyes--02121
CBEI290402:0:Tyes--0-
CBOT36826:1:Tno86-0-
CBOT441770:0:Tyes87-0-
CBOT441771:0:Tno88-0-
CBOT441772:1:Tno85-0-
CBOT498213:1:Tno75-0-
CBOT508765:1:Tyes--0317
CBOT515621:2:Tyes76-0-
CBOT536232:0:Tno88-0-
CCHL340177:0:Tyes0454627
CDIF272563:1:Tyes--0-
CDIP257309:0:Tyes0213
CEFF196164:0:Fyes0623637
CGLU196627:0:Tyes0141115
CHUT269798:0:Tyes-6451370
CHYD246194:0:Tyes0-1135-
CJEI306537:0:Tyes--20
CKLU431943:1:Tyes--01152
CKOR374847:0:Tyes-8080-
CMAQ397948:0:Tyes--0832
CMIC31964:2:Tyes201412
CMIC443906:2:Tyes4032292
CNOV386415:0:Tyes--0-
CPEL335992:0:Tyes---0
CPER195102:1:Tyes--0-
CPER195103:0:Tno--0-
CPER289380:3:Tyes--0-
CPRO264201:0:Fyes-60804
CSAL290398:0:Tyes-1987-0
CSP501479:8:Fyes---0
CSP78:2:Tyes0-45382796
CTEP194439:0:Tyes8760
CTET212717:0:Tyes--0-
DARO159087:0:Tyes120901730
DDES207559:0:Tyes---0
DGEO319795:0:Tyes0---
DGEO319795:1:Tyes--0-
DHAF138119:0:Tyes3-20
DPSY177439:2:Tyes-012
DRAD243230:3:Tyes--0-
DRED349161:0:Tyes--0-
DVUL882:1:Tyes---0
ECAR218491:0:Tyes4320
ECOL199310:0:Tno0125
ECOL316407:0:Tno0124
ECOL331111:6:Tno0124
ECOL362663:0:Tno0124
ECOL364106:1:Tno0125
ECOL405955:2:Tyes0124
ECOL409438:6:Tyes0124
ECOL413997:0:Tno0124
ECOL439855:4:Tno0124
ECOL469008:0:Tno4320
ECOL481805:0:Tno4320
ECOL585034:0:Tno0124
ECOL585035:0:Tno0124
ECOL585055:0:Tno0124
ECOL585056:2:Tno0124
ECOL585057:0:Tno0124
ECOL585397:0:Tno0124
ECOL83334:0:Tno0124
ECOLI:0:Tno0124
ECOO157:0:Tno0124
EFAE226185:3:Tyes-100903
EFER585054:1:Tyes4320
ESP42895:1:Tyes0124
FALN326424:0:Tyes0---
FJOH376686:0:Tyes--30
FPHI484022:1:Tyes-0--
FSP1855:0:Tyes0---
GFOR411154:0:Tyes--05
GKAU235909:1:Tyes0-15781580
GMET269799:1:Tyes--0-
GSUL243231:0:Tyes--0-
GTHE420246:1:Tyes041113
GURA351605:0:Tyes--0-
HAUR316274:2:Tyes0---
HBUT415426:0:Tyes-0--
HDUC233412:0:Tyes1720740683
HHAL349124:0:Tyes4320
HINF281310:0:Tyes078878796
HINF374930:0:Tyes1039409410
HINF71421:0:Tno076176086
HMAR272569:8:Tyes1040630
HMOD498761:0:Tyes--0-
HMUK485914:1:Tyes0126021462426
HNEP81032:0:Tyes--0-
HSAL478009:4:Tyes-034
HSOM205914:1:Tyes6461056
HSOM228400:0:Tno012701271628
HSP64091:2:Tno-034
HWAL362976:1:Tyes-310
JSP290400:1:Tyes--0-
KPNE272620:2:Tyes0124
KRAD266940:2:Fyes9350
LBIF355278:2:Tyes---0
LBIF456481:2:Tno---0
LBRE387344:2:Tyes1-0-
LCAS321967:1:Tyes-0--
LCHO395495:0:Tyes2423-0-
LDEL321956:0:Tyes-0--
LDEL390333:0:Tyes-0--
LINN272626:1:Tno0-13
LINT363253:3:Tyes--0-
LLAC272622:5:Tyes0-13
LLAC272623:0:Tyes0-13
LMES203120:1:Tyes--0673
LMON169963:0:Tno0-13
LMON265669:0:Tyes0-13
LREU557436:0:Tyes1-0-
LSPH444177:1:Tyes0-24
LWEL386043:0:Tyes0-13
LXYL281090:0:Tyes2016
MABS561007:1:Tyes192120
MAER449447:0:Tyes3206320719350
MAQU351348:2:Tyes0---
MAVI243243:0:Tyes0104810541046
MBOV233413:0:Tno012614
MBOV410289:0:Tno011613
MCAP243233:0:Tyes0---
MGIL350054:3:Tyes8526505260
MJAN243232:2:Tyes---0
MKAN190192:0:Tyes---0
MLEP272631:0:Tyes08510
MLOT266835:2:Tyes1157-0-
MMAG342108:0:Tyes1997-0-
MMAR394221:0:Tyes0---
MMAR402880:1:Tyes---0
MMAR426368:0:Tyes---0
MSED399549:0:Tyes0-975-
MSME246196:0:Tyes0411347
MSP164756:1:Tno018925
MSP164757:0:Tno018925
MSP189918:2:Tyes018925
MSP266779:3:Tyes0-1-
MSP409:2:Tyes0--62
MSUC221988:0:Tyes0952953955
MTBCDC:0:Tno013615
MTBRV:0:Tno011613
MTHE187420:0:Tyes---0
MTHE264732:0:Tyes0---
MTUB336982:0:Tno010612
MTUB419947:0:Tyes011613
MVAN350058:0:Tyes0341038
MXAN246197:0:Tyes3663650362
NARO279238:0:Tyes0---
NEUT335283:2:Tyes0---
NFAR247156:2:Tyes941150
NHAM323097:2:Tyes---0
NPHA348780:2:Tyes6520
NSP103690:6:Tyes-02335282
NSP35761:1:Tyes0137892
NWIN323098:0:Tyes0-16471739
OCAR504832:0:Tyes-1503-0
OIHE221109:0:Tyes344-02
PACN267747:0:Tyes-051
PAER178306:0:Tyes--01429
PAER208963:0:Tyes0-202-
PAER208964:0:Tno2207-0-
PARS340102:0:Tyes---0
PATL342610:0:Tyes---0
PDIS435591:0:Tyes--10
PFLU220664:0:Tyes0---
PGIN242619:0:Tyes--01
PING357804:0:Tyes01158160
PINT246198:1:Tyes--01
PISL384616:0:Tyes---0
PLUM243265:0:Fyes0124
PLUT319225:0:Tyes0125
PMAR146891:0:Tyes--10
PMAR167539:0:Tyes--01
PMAR167540:0:Tyes--10
PMAR167542:0:Tyes--10
PMAR167546:0:Tyes--10
PMAR167555:0:Tyes01428427
PMAR59920:0:Tno1524152510
PMAR74546:0:Tyes--10
PMAR74547:0:Tyes--01
PMAR93060:0:Tyes--10
PMEN399739:0:Tyes0---
PMUL272843:1:Tyes303104010420
PNAP365044:8:Tyes1160-0-
PPRO298386:2:Tyes01-3
PPUT160488:0:Tno0---
PPUT351746:0:Tyes0---
PPUT76869:0:Tno0---
PRUM264731:0:Tyes-012
PSP296591:2:Tyes2337-0-
PSP312153:0:Tyes--0-
PSTU379731:0:Tyes--0-
PTHE370438:0:Tyes331-0-
RCAS383372:0:Tyes0-36033602
RETL347834:5:Tyes---0
REUT264198:1:Tyes--0-
REUT264198:2:Tyes0--210
REUT381666:1:Tyes--0172
REUT381666:2:Tyes0---
RFER338969:1:Tyes0---
RLEG216596:4:Tyes--0-
RLEG216596:5:Tyes0---
RLEG216596:6:Tyes---0
RMET266264:2:Tyes0-522-
RPAL258594:0:Tyes90332801379
RPAL316055:0:Tyes1158-01561
RPAL316056:0:Tyes-41902224
RPAL316057:0:Tyes2287930556
RPAL316058:0:Tyes729--0
RPOM246200:1:Tyes0---
RRUB269796:1:Tyes--0-
RSAL288705:0:Tyes581570
RSOL267608:1:Tyes--0-
RSP101510:3:Fyes1446330
RSP357808:0:Tyes3795-01
RSPH272943:4:Tyes--0-
RSPH349101:1:Tno0---
RSPH349101:2:Tno--0-
RSPH349102:4:Tyes0---
RSPH349102:5:Tyes--0-
RXYL266117:0:Tyes0125
SACI330779:0:Tyes570-0-
SACI56780:0:Tyes015253
SALA317655:1:Tyes0---
SARE391037:0:Tyes3166-0-
SAUR158878:1:Tno--20
SAUR158879:1:Tno--20
SAUR196620:0:Tno--20
SAUR273036:0:Tno--20
SAUR282458:0:Tno--20
SAUR282459:0:Tno--20
SAUR359786:1:Tno--20
SAUR359787:1:Tno--20
SAUR367830:3:Tno--20
SAUR418127:0:Tyes--20
SAUR426430:0:Tno--20
SAUR93061:0:Fno--20
SAUR93062:1:Tno--20
SAVE227882:1:Fyes12-0-
SBAL399599:3:Tyes322150
SBAL402882:1:Tno322020
SBOY300268:1:Tyes0124
SCO:2:Fyes0---
SDYS300267:1:Tyes0124
SELO269084:0:Tyes4094108190
SENT209261:0:Tno4320
SENT220341:0:Tno0124
SENT295319:0:Tno4320
SENT321314:2:Tno0124
SENT454169:2:Tno0124
SEPI176279:1:Tyes--20
SEPI176280:0:Tno--20
SERY405948:0:Tyes6240062386237
SFLE198214:0:Tyes0124
SFLE373384:0:Tno0124
SFUM335543:0:Tyes--0-
SHAE279808:0:Tyes--02
SHAL458817:0:Tyes0140943
SHIGELLA:0:Tno0124
SLAC55218:1:Fyes340--
SLOI323850:0:Tyes322220
SMED366394:3:Tyes679792-0
SMEL266834:2:Tyes---0
SONE211586:1:Tyes321650
SPEA398579:0:Tno322580
SPRO399741:1:Tyes0124
SRUB309807:1:Tyes4313850
SSAP342451:2:Tyes--02
SSED425104:0:Tyes0144053
SSON300269:1:Tyes0124
SSP1131:0:Tyes1305130610
SSP1148:0:Tyes--01464
SSP292414:2:Tyes0---
SSP321327:0:Tyes246511134310
SSP321332:0:Tyes1815-01442
SSP64471:0:Tyes1109-10
SSP84588:0:Tyes1340134110
SSP94122:1:Tyes321600
STHE292459:0:Tyes--0-
STOK273063:0:Tyes0-1608-
STYP99287:1:Tyes0124
SWOL335541:0:Tyes--0-
TDEN292415:0:Tyes1967--0
TELO197221:0:Tyes1110106223720
TERY203124:0:Tyes--100
TFUS269800:0:Tyes0213
TPEN368408:1:Tyes-0--
TPSE340099:0:Tyes0---
TROS309801:0:Tyes4745430
TSP1755:0:Tyes0---
TTEN273068:0:Tyes1351-0-
TTHE262724:1:Tyes0---
TTUR377629:0:Tyes0124
TWHI203267:0:Tyes44-430
TWHI218496:0:Tno40-390
VCHO:0:Tyes0124
VCHO345073:1:Tno0124
VEIS391735:1:Tyes0-2409-
VFIS312309:2:Tyes0135
VPAR223926:1:Tyes4320
VVUL196600:2:Tyes4320
VVUL216895:1:Tno0124
XAUT78245:1:Tyes--0-
XAXO190486:0:Tyes--0-
XCAM190485:0:Tyes--0-
XCAM314565:0:Tno--0-
XCAM316273:0:Tno--0-
XCAM487884:0:Tno--0-
XORY291331:0:Tno--0-
XORY342109:0:Tyes--0-
XORY360094:0:Tno--0-
YENT393305:1:Tyes4320
YPES187410:5:Tno4320
YPES214092:3:Tno0124
YPES349746:2:Tno0124
YPES360102:3:Tyes0124
YPES377628:2:Tno0124
YPES386656:2:Tno0124
YPSE273123:2:Tno0124
YPSE349747:2:Tno4320



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