CANDIDATE ID: 367

CANDIDATE ID: 367

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9967217e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    2.5000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7339 (yphC) (b2545)
   Products of gene:
     - YPHC-MONOMER (predicted oxidoreductase, Zn-dependent and NAD(P)-binding)

- G6963 (ydjL) (b1776)
   Products of gene:
     - G6963-MONOMER (predicted oxidoreductase, Zn-dependent and NAD(P)-binding)

- EG10993 (tdh) (b3616)
   Products of gene:
     - THREODEHYD-MONOMER (Tdh)
     - THREODEHYD-CPLX (threonine dehydrogenase)
       Reactions:
        L-threonine + NAD+  ->  2-amino-3-oxobutanoate + NADH + 2 H+
         In pathways
         THREOCAT-PWY (superpathway of threonine metabolism)
         THRDLCTCAT-PWY (threonine degradation III (to methylglyoxal))
         THREONINE-DEG2-PWY (threonine degradation II)
         PWY-5448 (aminopropanol biosynthesis)
         PWY-5443 (PWY-5443)

- EG10512 (kbl) (b3617)
   Products of gene:
     - AKBLIG-MONOMER (Kbl)
     - AKBLIG-CPLX (2-amino-3-ketobutyrate CoA ligase)
       Reactions:
        glycine + acetyl-CoA  =  2-amino-3-oxobutanoate + coenzyme A + H+
         In pathways
         THREOCAT-PWY (superpathway of threonine metabolism)
         THREONINE-DEG2-PWY (threonine degradation II)



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 217
Effective number of orgs (counting one per cluster within 468 clusters): 137

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A4
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110184
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103314
XCAM487884 Xanthomonas campestris pv. paulliniae4
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-104
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80044
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339134
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3064
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TTHE300852 ncbi Thermus thermophilus HB84
TTHE262724 ncbi Thermus thermophilus HB274
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB44
TSP1755 Thermoanaerobacter sp.4
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332234
TLET416591 ncbi Thermotoga lettingae TMO3
TKOD69014 ncbi Thermococcus kodakarensis KOD13
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen3
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
STOK273063 ncbi Sulfolobus tokodaii 73
STHE292459 ncbi Symbiobacterium thermophilum IAM 148634
SSP94122 ncbi Shewanella sp. ANA-34
SSP644076 Silicibacter sp. TrichCH4B4
SSP292414 ncbi Ruegeria sp. TM10404
SSON300269 ncbi Shigella sonnei Ss0464
SSED425104 ncbi Shewanella sediminis HAW-EB34
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153054
SPRO399741 ncbi Serratia proteamaculans 5684
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-14
SMEL266834 ncbi Sinorhizobium meliloti 10214
SMED366394 ncbi Sinorhizobium medicae WSM4194
SLOI323850 ncbi Shewanella loihica PV-44
SLAC55218 Ruegeria lacuscaerulensis3
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14354
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23384
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SDEN318161 ncbi Shewanella denitrificans OS2174
SCO ncbi Streptomyces coelicolor A3(2)4
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
SAVE227882 ncbi Streptomyces avermitilis MA-46804
SAUR93062 ncbi Staphylococcus aureus aureus COL3
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83253
SAUR426430 ncbi Staphylococcus aureus aureus Newman3
SAUR418127 ncbi Staphylococcus aureus aureus Mu33
SAUR367830 Staphylococcus aureus aureus USA3003
SAUR359787 ncbi Staphylococcus aureus aureus JH13
SAUR359786 ncbi Staphylococcus aureus aureus JH93
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4763
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2523
SAUR273036 ncbi Staphylococcus aureus RF1223
SAUR196620 ncbi Staphylococcus aureus aureus MW23
SAUR158879 ncbi Staphylococcus aureus aureus N3153
SAUR158878 ncbi Staphylococcus aureus aureus Mu503
SARE391037 ncbi Salinispora arenicola CNS-2053
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99413
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170253
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170293
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.13
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332093
RPOM246200 ncbi Ruegeria pomeroyi DSS-34
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38414
REUT264198 ncbi Ralstonia eutropha JMP1343
RETL347834 ncbi Rhizobium etli CFN 424
RDEN375451 ncbi Roseobacter denitrificans OCh 1143
PSP296591 ncbi Polaromonas sp. JS6663
PPUT76869 ncbi Pseudomonas putida GB-13
PPRO298386 ncbi Photobacterium profundum SS94
PMOB403833 ncbi Petrotoga mobilis SJ954
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 374
PHOR70601 ncbi Pyrococcus horikoshii OT34
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PFUR186497 ncbi Pyrococcus furiosus DSM 36384
PFLU220664 ncbi Pseudomonas fluorescens Pf-53
PFLU216595 ncbi Pseudomonas fluorescens SBW253
PFLU205922 ncbi Pseudomonas fluorescens Pf0-13
PCAR338963 ncbi Pelobacter carbinolicus DSM 23804
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PAER208964 ncbi Pseudomonas aeruginosa PAO13
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA143
PACN267747 ncbi Propionibacterium acnes KPA1712024
PABY272844 ncbi Pyrococcus abyssi GE54
OIHE221109 ncbi Oceanobacillus iheyensis HTE8314
NSP35761 Nocardioides sp.4
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-13
MTHE264732 ncbi Moorella thermoacetica ATCC 390733
MSP400668 ncbi Marinomonas sp. MWYL14
MSP266779 ncbi Chelativorans sp. BNC14
MSP189918 ncbi Mycobacterium sp. KMS3
MSP164756 ncbi Mycobacterium sp. MCS3
MSME246196 ncbi Mycobacterium smegmatis MC2 1553
MSED399549 ncbi Metallosphaera sedula DSM 53483
MMAR394221 ncbi Maricaulis maris MCS103
MLOT266835 ncbi Mesorhizobium loti MAFF3030994
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK3
LPNE400673 ncbi Legionella pneumophila Corby4
LPNE297246 ncbi Legionella pneumophila Paris4
LPNE297245 ncbi Legionella pneumophila Lens4
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 14
KRAD266940 ncbi Kineococcus radiotolerans SRS302163
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
ILOI283942 ncbi Idiomarina loihiensis L2TR4
HMAR272569 ncbi Haloarcula marismortui ATCC 430494
HCHE349521 ncbi Hahella chejuensis KCTC 23963
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237793
GVIO251221 ncbi Gloeobacter violaceus PCC 74213
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-004
FTUL418136 ncbi Francisella tularensis tularensis WY96-34184
FTUL401614 ncbi Francisella novicida U1124
FTUL393115 ncbi Francisella tularensis tularensis FSC1984
FTUL393011 ncbi Francisella tularensis holarctica OSU184
FTUL351581 Francisella tularensis holarctica FSC2004
FRANT ncbi Francisella tularensis tularensis SCHU S44
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250174
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B13
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DSHI398580 ncbi Dinoroseobacter shibae DFL 123
DRAD243230 ncbi Deinococcus radiodurans R14
DGEO319795 ncbi Deinococcus geothermalis DSM 113004
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CSP501479 Citreicella sp. SE454
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CPSY167879 ncbi Colwellia psychrerythraea 34H4
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE253
CDIF272563 ncbi Clostridium difficile 6303
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1114
CBUR360115 ncbi Coxiella burnetii RSA 3314
CBUR227377 ncbi Coxiella burnetii RSA 4934
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B3
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80523
BXEN266265 ncbi Burkholderia xenovorans LB4004
BWEI315730 ncbi Bacillus weihenstephanensis KBAB43
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTHU412694 ncbi Bacillus thuringiensis Al Hakam4
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-274
BTHA271848 ncbi Burkholderia thailandensis E2644
BSUB ncbi Bacillus subtilis subtilis 1684
BSP376 Bradyrhizobium sp.4
BSP36773 Burkholderia sp.4
BPUM315750 ncbi Bacillus pumilus SAFR-0324
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BLIC279010 ncbi Bacillus licheniformis ATCC 145804
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1104
BHAL272558 ncbi Bacillus halodurans C-1254
BCLA66692 ncbi Bacillus clausii KSM-K163
BCER572264 ncbi Bacillus cereus 03BB1024
BCER405917 Bacillus cereus W4
BCER315749 ncbi Bacillus cytotoxicus NVH 391-983
BCER288681 ncbi Bacillus cereus E33L4
BCER226900 ncbi Bacillus cereus ATCC 145794
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BANT592021 ncbi Bacillus anthracis A02484
BANT568206 ncbi Bacillus anthracis CDC 6844
BANT261594 ncbi Bacillus anthracis Ames Ancestor4
BANT260799 ncbi Bacillus anthracis Sterne4
BAMY326423 ncbi Bacillus amyloliquefaciens FZB424
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
ASP1667 Arthrobacter sp.4
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
AMET293826 ncbi Alkaliphilus metalliredigens QYMF4
AHYD196024 Aeromonas hydrophila dhakensis4
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C4
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3454
AAUR290340 ncbi Arthrobacter aurescens TC14


Names of the homologs of the genes in the group in each of these orgs
  G7339   G6963   EG10993   EG10512   
YPSE349747 YPSIP31758_0072YPSIP31758_0072YPSIP31758_0072YPSIP31758_0071
YPSE273123 YPTB0057YPTB0057YPTB0057YPTB0056
YPES386656 YPDSF_3845YPDSF_3845YPDSF_3845YPDSF_3846
YPES377628 YPN_3790YPN_3790YPN_3790YPN_3791
YPES360102 YPA_3482YPA_3482YPA_3482YPA_3483
YPES349746 YPANGOLA_A0066YPANGOLA_A0066YPANGOLA_A0066YPANGOLA_A0065
YPES214092 YPO0060YPO0060YPO0060YPO0059
YPES187410 Y0080Y0080Y0080Y0081
YENT393305 YE0074YE0074YE0074YE0073
XORY360094 XOOORF_4363XOOORF_4363XOOORF_4363XOOORF_4369
XORY342109 XOO3480XOO3480XOO3480XOO3486
XORY291331 XOO3684XOO3684XOO3684XOO3691
XCAM487884 XCC-B100_3408XCC-B100_3408XCC-B100_3408XCC-B100_3414
XCAM316273 XCAORF_1139XCAORF_1139XCAORF_1139XCAORF_1132
XCAM314565 XC_3290XC_3290XC_3290XC_3296
XCAM190485 XCC0945XCC0945XCC0945XCC0939
XAXO190486 XAC1022XAC1022XAC1022XAC1016
VVUL216895 VV2_1485VV2_1485VV2_1485VV2_1484
VVUL196600 VVA0305VVA0305VVA0305VVA0304
VPAR223926 VPA1509VPA1509VPA1509VPA1510
VFIS312309 VFA0417VFA0417VFA0417VFA0418
VCHO345073 VC0395_0353VC0395_0353VC0395_0353VC0395_0352
VCHO VCA0885VCA0885VCA0885VCA0886
TTHE300852 TTHA0569TTHA0569TTHA0569TTHA1582
TTHE262724 TT_C0201TT_C0201TT_C0201TT_C1219
TTEN273068 TTE2405TTE2405TTE2405TTE2406
TSP1755 TETH514_0780TETH514_0780TETH514_0780TETH514_0779
TPSE340099 TETH39_0288TETH39_0288TETH39_0288TETH39_0287
TLET416591 TLET_2010TLET_2010TLET_2009
TKOD69014 TK0916TK0916TK2217
SWOL335541 SWOL_1727SWOL_1727SWOL_1727
STYP99287 STM3708STM3708STM3708STM3709
STOK273063 ST2341ST2341ST2341
STHE292459 STH1873STH1873STH1873STH1872
SSP94122 SHEWANA3_4105SHEWANA3_4105SHEWANA3_4105SHEWANA3_4104
SSP644076 SCH4B_3410SCH4B_3354SCH4B_3354SCH4B_3355
SSP292414 TM1040_0040TM1040_3023TM1040_3023TM1040_3024
SSON300269 SSO_2628SSO_3788SSO_3788SSO_3787
SSED425104 SSED_0100SSED_0100SSED_0100SSED_0101
SSAP342451 SSP0366SSP0366SSP0366SSP2205
SPRO399741 SPRO_4226SPRO_4823SPRO_4823SPRO_4824
SPEA398579 SPEA_0106SPEA_0106SPEA_0106SPEA_0107
SONE211586 SO_4673SO_4673SO_4673SO_4674
SMEL266834 SMC00105SMC01564SMC01564SMC01565
SMED366394 SMED_0584SMED_2224SMED_2224SMED_2225
SLOI323850 SHEW_3710SHEW_3710SHEW_3710SHEW_3709
SLAC55218 SL1157_0816SL1157_0816SL1157_0815
SHIGELLA YPHCS1562TDHKBL
SHAL458817 SHAL_4216SHAL_4216SHAL_4216SHAL_4215
SHAE279808 SH0215SH0215SH0215SH2457
SFLE373384 SFV_2593SFV_1439SFV_3912SFV_3911
SFLE198214 AAN44090.1AAN43045.1AAN45103.1AAN45104.1
SERY405948 SACE_2374SACE_6389SACE_6389SACE_6390
SENT454169 SEHA_C4033SEHA_C4033SEHA_C4033SEHA_C4034
SENT321314 SCH_3631SCH_1307SCH_3631SCH_3632
SENT295319 SPA3560SPA3560SPA3560SPA3561
SENT220341 STY4087STY4087STY4087STY4086
SENT209261 T3811T3811T3811T3810
SDYS300267 SDY_4049SDY_1491SDY_4049SDY_4050
SDEN318161 SDEN_3616SDEN_3616SDEN_3616SDEN_3615
SCO SCO0179SCO6799SCO6799SCO6800
SBOY300268 SBO_2571SBO_3622SBO_3622SBO_3623
SBAL402882 SHEW185_4341SHEW185_4341SHEW185_4341SHEW185_4340
SBAL399599 SBAL195_4481SBAL195_4481SBAL195_4481SBAL195_4480
SAVE227882 SAV5335SAV1628SAV1628SAV1627
SAUR93062 SACOL0233SACOL0233SACOL0596
SAUR93061 SAOUHSC_00217SAOUHSC_00217SAOUHSC_00532
SAUR426430 NWMN_0183NWMN_0183NWMN_0512
SAUR418127 SAHV_0247SAHV_0247SAHV_0548
SAUR367830 SAUSA300_0242SAUSA300_0242SAUSA300_0535
SAUR359787 SAURJH1_0239SAURJH1_0239SAURJH1_0587
SAUR359786 SAURJH9_0233SAURJH9_0233SAURJH9_0573
SAUR282459 SAS0224SAS0224SAS0508
SAUR282458 SAR0243SAR0243SAR0555
SAUR273036 SAB0187SAB0187SAB0501
SAUR196620 MW0224MW0224MW0505
SAUR158879 SA0239SA0239SA0508
SAUR158878 SAV0248SAV0248SAV0550
SARE391037 SARE_2101SARE_4846SARE_4846
RXYL266117 RXYL_3075RXYL_0351RXYL_1589
RSPH349102 RSPH17025_1899RSPH17025_1899RSPH17025_1900
RSPH349101 RSPH17029_1037RSPH17029_1037RSPH17029_1036
RSPH272943 RSP_2377RSP_2377RSP_2376
RSAL288705 RSAL33209_1301RSAL33209_1301RSAL33209_1302
RPOM246200 SPO_1889SPO_3359SPO_3359SPO_3360
RLEG216596 PRL110170RL3404RL3404RL3405
REUT264198 REUT_A1825REUT_C6321REUT_B4803
RETL347834 RHE_CH01189RHE_CH02951RHE_CH02951RHE_CH02952
RDEN375451 RD1_0198RD1_0198RD1_0199
PSP296591 BPRO_1286BPRO_1286BPRO_4366
PPUT76869 PPUTGB1_0597PPUTGB1_0597PPUTGB1_0393
PPRO298386 PBPRA1730PBPRA1730PBPRA1730PBPRA1729
PMOB403833 PMOB_1548PMOB_1548PMOB_1548PMOB_1549
PLUM243265 PLU4845PLU4845PLU4845PLU4846
PING357804 PING_1853PING_1853PING_1853PING_1852
PHOR70601 PH0655PH0655PH0655PH0292
PHAL326442 PSHAA2315PSHAA2315PSHAA2315PSHAA2316
PFUR186497 PF0991PF0991PF0991PF0265
PFLU220664 PFL_3365PFL_2173PFL_5692
PFLU216595 PFLU4115PFLU3993PFLU5614
PFLU205922 PFL_3346PFL_3346PFL_5175
PCAR338963 PCAR_0330PCAR_0330PCAR_2180PCAR_1665
PATL342610 PATL_0797PATL_0062PATL_0062PATL_0061
PAER208964 PA4097PA4153PA0501
PAER208963 PA14_10900PA14_10230PA14_06510
PACN267747 PPA0539PPA0402PPA0402PPA0403
PABY272844 PAB2382PAB2382PAB2382PAB1244
OIHE221109 OB2752OB2752OB2752OB3054
NSP35761 NOCA_1166NOCA_3165NOCA_3757NOCA_3756
MVAN350058 MVAN_0788MVAN_5590MVAN_0490
MTHE264732 MOTH_2268MOTH_2268MOTH_0475
MSP400668 MMWYL1_0234MMWYL1_3793MMWYL1_3793MMWYL1_3792
MSP266779 MESO_0444MESO_0444MESO_0444MESO_0443
MSP189918 MKMS_1759MKMS_2830MKMS_2830
MSP164756 MMCS_1713MMCS_2786MMCS_2786
MSME246196 MSMEG_4002MSMEG_3605MSMEG_3605
MSED399549 MSED_0196MSED_0196MSED_0196
MMAR394221 MMAR10_1594MMAR10_1594MMAR10_1598
MLOT266835 MLR8299MLR8299MLR8299MLL9204
MGIL350054 MFLV_0125MFLV_1218MFLV_0660
LPNE400673 LPC_2592LPC_2592LPC_2592LPC_2593
LPNE297246 LPP0757LPP0757LPP0757LPP0756
LPNE297245 LPL0739LPL0739LPL0739LPL0738
LPNE272624 LPG0702LPG0702LPG0702LPG0701
KRAD266940 KRAD_2224KRAD_2089KRAD_1455
KPNE272620 GKPORF_B3322GKPORF_B3322GKPORF_B3322GKPORF_B3323
ILOI283942 IL0269IL0269IL0269IL0270
HMAR272569 PNG7351PNG7032PNG7032RRNAC0885
HCHE349521 HCH_01632HCH_01632HCH_01633
HAUR316274 HAUR_2565HAUR_2565HAUR_2298
GVIO251221 GLL2836GLR0369GLL0397
FTUL458234 FTA_1607FTA_1607FTA_1607FTA_1606
FTUL418136 FTW_1528FTW_1528FTW_1528FTW_1527
FTUL401614 FTN_0625FTN_0625FTN_0625FTN_0626
FTUL393115 FTF0713CFTF0713CFTF0713CFTF0714C
FTUL393011 FTH_1473FTH_1473FTH_1473FTH_1472
FTUL351581 FTL_1523FTL_1523FTL_1523FTL_1522
FRANT TDHTDHTDHKBL
FPHI484022 FPHI_0217FPHI_0217FPHI_0217FPHI_0216
FNOD381764 FNOD_1306FNOD_1306FNOD_1307
ESP42895 ENT638_0119ENT638_0119ENT638_0119ENT638_0118
EFER585054 EFER_3906EFER_3906EFER_3906EFER_3907
ECOO157 YPHC_2Z2815TDHKBL
ECOL83334 ECS3411ECS2485ECS4494ECS4495
ECOL585397 ECED1_2972ECED1_1980ECED1_4302ECED1_4303
ECOL585057 ECIAI39_2748ECIAI39_1277ECIAI39_4137ECIAI39_4138
ECOL585056 ECUMN_2865ECUMN_2065ECUMN_4133ECUMN_4134
ECOL585055 EC55989_2831EC55989_1945EC55989_4083EC55989_4084
ECOL585035 ECS88_2715ECS88_1828ECS88_4033ECS88_4034
ECOL585034 ECIAI1_2598ECIAI1_1839ECIAI1_3789ECIAI1_3790
ECOL481805 ECOLC_1132ECOLC_1856ECOLC_0092ECOLC_0091
ECOL469008 ECBD_1139ECBD_1868ECBD_0109ECBD_0108
ECOL439855 ECSMS35_2698ECSMS35_1415ECSMS35_3953ECSMS35_3954
ECOL413997 ECB_02437ECB_01745ECB_03474ECB_03475
ECOL409438 ECSE_2832ECSE_1947ECSE_3899ECSE_3900
ECOL405955 APECO1_3986APECO1_845APECO1_2839APECO1_2838
ECOL364106 UTI89_C2864UTI89_C1972UTI89_C4162UTI89_C4163
ECOL362663 ECP_2546ECP_1724ECP_3717ECP_3718
ECOL331111 ECE24377A_2830ECE24377A_2000ECE24377A_4120ECE24377A_4121
ECOL316407 ECK2542:JW5842:B2545ECK1774:JW1765:B1776ECK3606:JW3591:B3616ECK3607:JW3592:B3617
ECOL199310 C3067C2181C4443C4444
ECAR218491 ECA0168ECA0168ECA0168ECA0167
DSHI398580 DSHI_1078DSHI_4159DSHI_1182
DRAD243230 DR_1662DR_1662DR_1662DR_2346
DGEO319795 DGEO_0449DGEO_0449DGEO_0449DGEO_0057
CVIO243365 CV_1651CV_1651CV_1651CV_1650
CSP501479 CSE45_2114CSE45_2302CSE45_2302CSE45_2303
CSAL290398 CSAL_2912CSAL_0359CSAL_0359CSAL_1166
CPSY167879 CPS_0121CPS_0121CPS_0121CPS_0120
CPRO264201 PC0810PC0810PC0811
CDIF272563 CD0490CD0490CD2323
CBUR434922 COXBU7E912_1995COXBU7E912_1995COXBU7E912_1995COXBU7E912_1996
CBUR360115 COXBURSA331_A0201COXBURSA331_A0201COXBURSA331_A0201COXBURSA331_A0200
CBUR227377 CBU_0112CBU_0112CBU_0112CBU_0111
CBOT508765 CLL_A3334CLL_A0664CLL_A3334
CBEI290402 CBEI_0544CBEI_0544CBEI_0223
BXEN266265 BXE_B3020BXE_B3020BXE_B3020BXE_B3021
BWEI315730 BCERKBAB4_0589BCERKBAB4_0589BCERKBAB4_0534
BVIE269482 BCEP1808_3787BCEP1808_5062BCEP1808_3787BCEP1808_3788
BTHU412694 BALH_2794BALH_0616BALH_0616BALH_0558
BTHU281309 BT9727_2881BT9727_0585BT9727_0585BT9727_0530
BTHA271848 BTH_II0428BTH_II0006BTH_II0006BTH_II0005
BSUB BSU06150BSU16990BSU16990BSU17000
BSP376 BRADO6611BRADO1804BRADO1804BRADO6672
BSP36773 BCEP18194_C7277BCEP18194_B1325BCEP18194_B3178BCEP18194_B3179
BPUM315750 BPUM_1170BPUM_1603BPUM_1603BPUM_1604
BPSE320373 BURPS668_A2784BURPS668_A0006BURPS668_A0006BURPS668_A0005
BPSE320372 BURPS1710B_B1230BURPS1710B_B1776BURPS1710B_B1776BURPS1710B_B1775
BPSE272560 BPSS1944BPSS0006BPSS0006BPSS0005
BMAL320389 BMA10247_A0157BMA10247_A0007BMA10247_A0007BMA10247_A0006
BMAL320388 BMASAVP1_1300BMASAVP1_1152BMASAVP1_1152BMASAVP1_1151
BMAL243160 BMA_A0132BMA_A0006BMA_A0006BMA_A0005
BLIC279010 BL03658BL03658BL03658BL03659
BJAP224911 BLL5655BLR5278BLR5278BLL1200
BHAL272558 BH0189BH0189BH0189BH3907
BCLA66692 ABC3344ABC3344ABC3344
BCER572264 BCA_3189BCA_0711BCA_0711BCA_0654
BCER405917 BCE_3145BCE_0742BCE_0742BCE_0688
BCER315749 BCER98_3661BCER98_3661BCER98_0533
BCER288681 BCE33L0739BCE33L0584BCE33L0584BCE33L0530
BCER226900 BC_3092BC_0668BC_0668BC_0621
BCEN331272 BCEN2424_4438BCEN2424_4523BCEN2424_5702BCEN2424_5701
BCEN331271 BCEN_3928BCEN_3845BCEN_5157BCEN_5158
BANT592021 BAA_3180BAA_0758BAA_0758BAA_0702
BANT568206 BAMEG_1479BAMEG_3911BAMEG_3911BAMEG_3967
BANT261594 GBAA3131GBAA0675GBAA0675GBAA0620
BANT260799 BAS2912BAS0641BAS0641BAS0586
BAMY326423 RBAM_006540RBAM_016830RBAM_016830RBAM_016840
BAMB398577 BAMMC406_4330BAMMC406_4416BAMMC406_3116BAMMC406_3115
BAMB339670 BAMB_4973BAMB_3953BAMB_4973BAMB_4972
ASP1667 ARTH_1821ARTH_1310ARTH_1310ARTH_1311
ASAL382245 ASA_0090ASA_0090ASA_0090ASA_0091
AMET293826 AMET_0590AMET_0590AMET_0590AMET_3634
AHYD196024 AHA_4235AHA_4235AHA_4235AHA_4234
ADEH290397 ADEH_2095ADEH_2095ADEH_2095ADEH_2094
ABAC204669 ACID345_3920ACID345_3920ACID345_3920ACID345_3919
AAUR290340 AAUR_1903AAUR_1459AAUR_1459AAUR_1460


Organism features enriched in list (features available for 202 out of the 217 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00029541892
Arrangment:Clusters 0.00005401417
Arrangment:Pairs 0.000082156112
Disease:Bubonic_plague 0.001647366
Disease:Dysentery 0.001647366
Disease:Gastroenteritis 0.00180201013
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.0015474911
Disease:Tularemia 0.004833155
Endospores:No 0.004261260211
Endospores:Yes 0.00442812753
GC_Content_Range4:0-40 5.523e-650213
GC_Content_Range4:60-100 0.001845464145
GC_Content_Range7:0-30 2.509e-6347
GC_Content_Range7:30-40 0.009784347166
GC_Content_Range7:60-70 0.004892158134
Genome_Size_Range5:0-2 5.980e-2011155
Genome_Size_Range5:2-4 0.000060648197
Genome_Size_Range5:4-6 1.814e-18111184
Genome_Size_Range5:6-10 9.004e-73247
Genome_Size_Range9:1-2 2.932e-1411128
Genome_Size_Range9:2-3 0.006237831120
Genome_Size_Range9:3-4 0.00426671777
Genome_Size_Range9:4-5 1.143e-65496
Genome_Size_Range9:5-6 2.731e-105788
Genome_Size_Range9:6-8 9.474e-62638
Gram_Stain:Gram_Neg 0.0003174134333
Habitat:Host-associated 0.002303257206
Habitat:Terrestrial 0.00035992031
Motility:No 0.006202541151
Motility:Yes 8.743e-10127267
Optimal_temp.:30-37 0.00090671318
Optimal_temp.:37 0.001280824106
Oxygen_Req:Anaerobic 2.105e-616102
Oxygen_Req:Facultative 7.786e-796201
Oxygen_Req:Microaerophilic 0.0040939118
Pathogenic_in:Animal 0.00021803666
Pathogenic_in:No 0.006334066226
Shape:Rod 6.087e-11156347
Shape:Sphere 0.0027840119
Shape:Spiral 6.040e-6134



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 345
Effective number of orgs (counting one per cluster within 468 clusters): 292

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM41
XFAS405440 ncbi Xylella fastidiosa M121
XFAS183190 ncbi Xylella fastidiosa Temecula11
XFAS160492 ncbi Xylella fastidiosa 9a5c1
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VEIS391735 ncbi Verminephrobacter eiseniae EF01-20
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS11
TSP28240 Thermotoga sp.0
TROS309801 ncbi Thermomicrobium roseum DSM 51591
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252591
TDEN243275 ncbi Treponema denticola ATCC 354051
TCRU317025 ncbi Thiomicrospira crunogena XCL-21
TACI273075 ncbi Thermoplasma acidophilum DSM 17281
STRO369723 ncbi Salinispora tropica CNB-4400
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SRUB309807 ncbi Salinibacter ruber DSM 138551
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPNE488221 ncbi Streptococcus pneumoniae 705851
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-61
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-141
SPNE171101 ncbi Streptococcus pneumoniae R61
SPNE170187 ncbi Streptococcus pneumoniae G541
SPNE1313 Streptococcus pneumoniae1
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SGOR29390 Streptococcus gordonii Challis1
SGLO343509 ncbi Sodalis glossinidius morsitans1
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB1
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SALA317655 ncbi Sphingopyxis alaskensis RB22561
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP357808 ncbi Roseiflexus sp. RS-11
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111701
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316058 ncbi Rhodopseudomonas palustris HaA21
RPAL316057 ncbi Rhodopseudomonas palustris BisB51
RPAL316056 ncbi Rhodopseudomonas palustris BisB181
RPAL316055 ncbi Rhodopseudomonas palustris BisA531
RPAL258594 ncbi Rhodopseudomonas palustris CGA0091
RMET266264 ncbi Ralstonia metallidurans CH341
RMAS416276 ncbi Rickettsia massiliae MTU50
RFER338969 ncbi Rhodoferax ferrireducens T1180
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139411
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97901
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30001
PSTU379731 ncbi Pseudomonas stutzeri A15011
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-11
PRUM264731 ncbi Prevotella ruminicola 231
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PNAP365044 ncbi Polaromonas naphthalenivorans CJ21
PMUL272843 ncbi Pasteurella multocida multocida Pm700
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2731
PISL384616 ncbi Pyrobaculum islandicum DSM 41841
PINT246198 Prevotella intermedia 171
PGIN242619 ncbi Porphyromonas gingivalis W831
PENT384676 ncbi Pseudomonas entomophila L481
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM21
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP103690 ncbi Nostoc sp. PCC 71201
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
NOCE323261 ncbi Nitrosococcus oceani ATCC 197071
NMUL323848 ncbi Nitrosospira multiformis ATCC 251961
NMEN374833 ncbi Neisseria meningitidis 0534421
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC581
NHAM323097 ncbi Nitrobacter hamburgensis X141
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101521
NEUT335283 ncbi Nitrosomonas eutropha C911
NEUR228410 ncbi Nitrosomonas europaea ATCC 197181
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E1
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP409 Methylobacterium sp.0
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM11
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K1
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-11
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath1
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-11
MAQU351348 ncbi Marinobacter aquaeolei VT81
MAER449447 ncbi Microcystis aeruginosa NIES-8431
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCHO395495 ncbi Leptothrix cholodnii SP-61
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
LACI272621 ncbi Lactobacillus acidophilus NCFM0
JSP290400 ncbi Jannaschia sp. CCS11
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-11
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HSAL478009 ncbi Halobacterium salinarum R11
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HINF71421 ncbi Haemophilus influenzae Rd KW201
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP1
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL11
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-20
GSUL243231 ncbi Geobacter sulfurreducens PCA1
GOXY290633 ncbi Gluconobacter oxydans 621H1
GMET269799 ncbi Geobacter metallireducens GS-151
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FSP106370 ncbi Frankia sp. CcI30
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25941
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRED349161 ncbi Desulfotomaculum reducens MI-11
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DHAF138119 ncbi Desulfitobacterium hafniense Y511
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
DARO159087 ncbi Dechloromonas aromatica RCB1
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA1
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)1
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1010
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT1
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus1
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C1
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD31
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB151
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPET94624 Bordetella petrii1
BPER257313 ncbi Bordetella pertussis Tohama I0
BPAR257311 ncbi Bordetella parapertussis 128221
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M1
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BCIC186490 Candidatus Baumannia cicadellinicola0
BBUR224326 ncbi Borrelia burgdorferi B310
BBRO257310 ncbi Bordetella bronchiseptica RB501
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN11
ASP62977 ncbi Acinetobacter sp. ADP11
ASP62928 ncbi Azoarcus sp. BH721
ASP232721 ncbi Acidovorax sp. JS421
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL030
APLE416269 ncbi Actinobacillus pleuropneumoniae L200
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs1
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110171
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232701
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK21
ABAU360910 ncbi Bordetella avium 197N1
AAEO224324 ncbi Aquifex aeolicus VF51


Names of the homologs of the genes in the group in each of these orgs
  G7339   G6963   EG10993   EG10512   
ZMOB264203 ZMO1270
XFAS405440 XFASM12_0710
XFAS183190 PD_0598
XFAS160492 XF1357
WSUC273121
WPIP955
WPIP80849
VEIS391735
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496 TW0421
TWHI203267 TW326
TVOL273116 TVN0398
TSP28240
TROS309801 TRD_A0539
TPET390874
TPEN368408
TPAL243276
TMAR243274
TFUS269800
TERY203124 TERY_0352
TELO197221
TDEN326298
TDEN292415 TBD_0669
TDEN243275 TDE_2194
TCRU317025 TCR_1979
TACI273075 TA1189
STRO369723
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP387093
SSP321332
SSP321327
SSP1148
SSP1131
SRUB309807 SRU_0382
SPYO370554 MGAS10750_SPY0985
SPYO370553 MGAS2096_SPY0909
SPYO370551 MGAS9429_SPY0953
SPYO319701 M28_SPY0040
SPYO286636 M6_SPY0090
SPYO193567 SPS0972
SPNE488221 SP70585_2143
SPNE487214 SPH_2210
SPNE487213 SPT_2050
SPNE171101 SPR1866
SPNE170187 SPN20024
SPNE1313 SPJ_2061
SMUT210007
SMAR399550
SGOR29390 SGO_0440
SGLO343509 SG0904
SFUM335543 SFUM_2235
SEPI176280
SEPI176279
SELO269084
SALA317655 SALA_2171
SAGA211110 GBS0054
SAGA208435
SAGA205921
RTYP257363
RSP357808 ROSERS_0752
RRUB269796 RRU_A1146
RRIC452659
RRIC392021
RPRO272947
RPAL316058 RPB_3969
RPAL316057 RPD_3724
RPAL316056 RPC_1325
RPAL316055 RPE_1359
RPAL258594 RPA1554
RMET266264 RMET_4805
RMAS416276
RFER338969
RFEL315456
RCON272944
RCAS383372 RCAS_4434
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820 PTO0757
PSYR223283 PSPTO_0495
PSTU379731 PST_3865
PSP56811
PSP312153 PNUC_0154
PRUM264731 GFRORF0463
PPEN278197
PNAP365044 PNAP_4032
PMUL272843
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225 PLUT_0257
PISL384616 PISL_0338
PINT246198 PIN_A0756
PGIN242619 PG_0481
PENT384676 PSEEN5120
PCRY335284
PAST100379
PARS340102 PARS_0396
PARC259536
PAER178306 PAE2931
OTSU357244
NWIN323098
NSP387092
NSP103690 ALR2335
NSEN222891
NPHA348780 NP4232A
NOCE323261 NOC_2100
NMUL323848 NMUL_A1130
NMEN374833 NMCC_1310
NMEN272831
NMEN122587
NMEN122586 NMB_1395
NHAM323097 NHAM_1928
NGON242231
NFAR247156 NFA25010
NEUT335283 NEUT_2137
NEUR228410 NE2299
MTUB419947 MRA_0035
MTUB336982 TBFG_10031
MTHE349307
MTHE187420
MTBRV RV0032
MTBCDC MT0037
MSYN262723
MSUC221988 MS0525
MSTA339860
MSP409
MPUL272635
MPNE272634
MPET420662 MPE_A0530
MPEN272633
MMYC272632
MMOB267748 MMOB5780
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MMAG342108 AMB1683
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MEXT419610
MCAP340047
MCAP243233 MCA_1126
MBUR259564
MBOV410289 BCG_0063
MBOV233413 MB0033
MBAR269797
MAVI243243
MART243272 MART0624
MAQU351348 MAQU_2755
MAER449447 MAE_40370
MAEO419665
MACE188937
MABS561007
LXYL281090 LXX22610
LSAK314315 LSA0509
LREU557436 LREU_1860
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT363253
LINT267671 LIC_10809
LINT189518 LA3353
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCHO395495 LCHO_3642
LCAS321967
LBRE387344
LBOR355277 LBJ_2359
LBOR355276 LBL_0749
LBIF456481 LEPBI_I3293
LBIF355278 LBF_3179
LACI272621
JSP290400 JANN_3964
IHOS453591
HWAL362976
HSP64091 VNG2617G
HSOM228400
HSOM205914
HSAL478009 OE4674F
HPYL85963
HPYL357544
HPY
HNEP81032
HMOD498761
HINF71421 HI_0053
HINF374930
HINF281310 NTHI0063
HHEP235279
HHAL349124 HHAL_0962
HDUC233412
HBUT415426
HACI382638
GTHE420246
GSUL243231 GSU_2629
GOXY290633 GOX1636
GMET269799 GMET_0842
GBET391165
FSUC59374 FSU0220
FSP106370
FNUC190304
FMAG334413
FJOH376686 FJOH_0698
FALN326424
ERUM302409
ERUM254945
ELIT314225 ELI_04785
EFAE226185
ECHA205920
ECAN269484
DVUL882
DSP255470
DSP216389
DRED349161 DRED_3256
DPSY177439
DOLE96561
DNOD246195
DHAF138119 DSY3044
DETH243164
DDES207559
DARO159087 DARO_2897
CVES412965 COSY_0760
CTRA471473
CTRA471472
CTET212717
CTEP194439 CT_1951
CSUL444179
CRUT413404 RMAG_0835
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPER289380
CPER195102
CPEL335992
CNOV386415 NT01CX_0344
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948 CMAQ_1719
CKOR374847 KCR_0632
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CJAP155077 CJA_0427
CHUT269798
CHOM360107
CGLU196627
CFET360106
CFEL264202
CEFF196164 CE0053
CDIP257309
CDES477974 DAUD_1326
CCUR360105
CCON360104
CCHL340177 CAG_0226
CCAV227941
CBLO291272
CBLO203907
CAULO CC1162
CACE272562 CAC3375
CABO218497
BTUR314724
BTRI382640
BTHE226186 BT_1371
BSP107806
BQUI283165
BPET94624 BPET0010
BPER257313
BPAR257311 BPP0546
BMEL224914 BMEI1604
BLON206672
BHER314723
BHEN283166
BGAR290434
BFRA295405 BF2988
BFRA272559 BF2864
BCIC186490
BBUR224326
BBRO257310 BB0552
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AVAR240292
AURANTIMONAS
ASP76114 EBA6018
ASP62977 ACIAD3339
ASP62928 AZO1889
ASP232721 AJS_1889
APLE434271
APLE416269
APHA212042
APER272557
AORE350688 CLOS_0909
ANAE240017
AMAR329726 AM1_0726
AMAR234826
ALAI441768
AFUL224325
AFER243159 AFE_2785
ACEL351607
ABUT367737
ABOR393595 ABO_2219
ABAU360910 BAV2449
AAEO224324 AQ_626


Organism features enriched in list (features available for 325 out of the 345 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.0011397317
Arrangment:Pairs 0.000209246112
Disease:Pharyngitis 0.008973488
Disease:bronchitis_and_pneumonitis 0.008973488
Endospores:No 0.0001286138211
Endospores:Yes 0.00001611553
GC_Content_Range4:0-40 9.337e-6143213
GC_Content_Range4:60-100 0.000749165145
GC_Content_Range7:0-30 0.00040663747
GC_Content_Range7:30-40 0.0033135106166
GC_Content_Range7:50-60 0.002163347107
GC_Content_Range7:60-70 0.001169260134
Genome_Size_Range5:0-2 7.328e-26139155
Genome_Size_Range5:2-4 0.0047188123197
Genome_Size_Range5:4-6 2.998e-1953184
Genome_Size_Range5:6-10 4.627e-71047
Genome_Size_Range9:0-1 8.531e-82727
Genome_Size_Range9:1-2 5.809e-18112128
Genome_Size_Range9:2-3 0.001146081120
Genome_Size_Range9:4-5 2.284e-63396
Genome_Size_Range9:5-6 7.286e-122088
Genome_Size_Range9:6-8 0.0000274938
Genome_Size_Range9:8-10 0.007037519
Habitat:Host-associated 0.0001376135206
Habitat:Multiple 0.000571782178
Habitat:Terrestrial 0.0003978831
Motility:No 0.002344698151
Motility:Yes 2.571e-9114267
Optimal_temp.:30-37 0.0000832218
Optimal_temp.:35-37 0.00045051313
Optimal_temp.:37 0.003059871106
Oxygen_Req:Anaerobic 0.000061774102
Oxygen_Req:Facultative 9.879e-688201
Oxygen_Req:Microaerophilic 0.00232551618
Pathogenic_in:Animal 0.00392392766
Pathogenic_in:No 0.0057195139226
Shape:Rod 6.613e-13152347
Shape:Sphere 0.00018931819
Shape:Spiral 3.150e-83334



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
THREONINE-DEG2-PWY (threonine degradation II)2141720.6914
RIBOKIN-PWY (ribose degradation)2791620.4392
PWY0-1295 (pyrimidine ribonucleosides degradation I)2391460.4348
GLUTAMINDEG-PWY (glutamine degradation I)1911250.4273
SERDEG-PWY (L-serine degradation)3491840.4238
AST-PWY (arginine degradation II (AST pathway))120910.4203
GALACTITOLCAT-PWY (galactitol degradation)73650.4145
XYLCAT-PWY (xylose degradation I)2171340.4131



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6963   EG10993   EG10512   
G73390.9996630.9996290.999358
G69630.999880.999727
EG109930.999776
EG10512



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PAIRWISE BLAST SCORES:

  G7339   G6963   EG10993   EG10512   
G73390.0f0-3.1e-24-
G6963-0.0f03.9e-40-
EG10993-2.3e-350.0f0-
EG10512---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- THREOCAT-PWY (superpathway of threonine metabolism) (degree of match pw to cand: 0.083, degree of match cand to pw: 0.500, average score: 0.637)
  Genes in pathway or complex:
             0.6274 0.3415 M014 (mhpF) MHPF-MONOMER (acetaldehyde dehydrogenase 2)
             0.3006 0.0722 EG10031 (adhE) ADHE-MONOMER (AdhE)
             0.4611 0.2126 G6455 (ltaE) LTAA-MONOMER (LtaA)
             0.4276 0.1364 EG13139 (tynA) AMINEOXID-MONOMER (TynA)
   *in cand* 0.9997 0.9994 EG10512 (kbl) AKBLIG-MONOMER (Kbl)
             0.1171 0.0572 EG10027 (ackA) ACETATEKINA-MONOMER (propionate kinase / acetate kinase)
             0.1528 0.0669 EG11172 (tdcD) PROPKIN-MONOMER (propionate kinase)
             0.1424 0.0779 EG20173 (pta) PHOSACETYLTRANS-MONOMER (Pta)
             0.4136 0.1210 EG10701 (pflB) PYRUVFORMLY-MONOMER (PflB)
             0.3853 0.1108 G7627 (tdcE) KETOBUTFORMLY-MONOMER (2-ketobutyrate formate-lyase / pyruvate formate-lyase 4)
             0.8265 0.7873 EG10990 (tdcB) THREDEHYDCAT-MONOMER (TdcB)
             0.9227 0.8034 EG10493 (ilvA) THREDEHYDSYN-MONOMER (IlvA)
             0.9741 0.9637 EG10501 (ilvM) SMALLILVM-MONOMER (IlvM)
                NIL    NIL EG10498 (ilvG_2) LARGEILVG-MONOMER (acetolactate synthase II, large subunit, C-ter fragment (pseudogene))
                NIL    NIL G8221 (ilvG_1) G8221-MONOMER (acetolactate synthase II, large subunit, N-ter fragment (pseudogene))
             0.7607 0.5556 EG10502 (ilvN) SMALLILVN-MONOMER (IlvN)
             0.9354 0.8735 EG10494 (ilvB) LARGEILVB-MONOMER (IlvB)
             0.6165 0.3028 EG10499 (ilvH) ACETOLACTSYNIII-HCHAIN-MONOMER (IlvH)
             0.5327 0.2972 EG10500 (ilvI) ACETOLACTSYNIII-ICHAIN-MONOMER (IlvI)
             0.9161 0.7933 EG10495 (ilvC) KETOLREDUCTOISOM-MONOMER (IlvC)
             0.9448 0.8875 EG10497 (ilvE) BRANCHED-CHAINAMINOTRANSFER-MONOMER (IlvE)
             0.9699 0.9333 EG10496 (ilvD) DIHYDROXYACIDDEHYDRAT-MONOMER (IlvD)
             0.8874 0.7372 EG11904 (gldA) GLYCDEH-MONOMER (GldA)
   *in cand* 0.9998 0.9996 EG10993 (tdh) THREODEHYD-MONOMER (Tdh)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9998 0.9997 G6963 (ydjL) G6963-MONOMER (predicted oxidoreductase, Zn-dependent and NAD(P)-binding)
   *in cand* 0.9997 0.9994 G7339 (yphC) YPHC-MONOMER (predicted oxidoreductase, Zn-dependent and NAD(P)-binding)

- THREONINE-DEG2-PWY (threonine degradation II) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.500, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9998 0.9996 EG10993 (tdh) THREODEHYD-MONOMER (Tdh)
   *in cand* 0.9997 0.9994 EG10512 (kbl) AKBLIG-MONOMER (Kbl)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9998 0.9997 G6963 (ydjL) G6963-MONOMER (predicted oxidoreductase, Zn-dependent and NAD(P)-binding)
   *in cand* 0.9997 0.9994 G7339 (yphC) YPHC-MONOMER (predicted oxidoreductase, Zn-dependent and NAD(P)-binding)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10512 EG10993 (centered at EG10512)
G6963 (centered at G6963)
G7339 (centered at G7339)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7339   G6963   EG10993   EG10512   
249/623258/623251/623311/623
AAEO224324:0:Tyes---0
AAUR290340:2:Tyes425001
AAVE397945:0:Tyes0--595
ABAC204669:0:Tyes1110
ABAU360910:0:Tyes---0
ABOR393595:0:Tyes---0
ACAU438753:0:Tyes0-2321-
ACRY349163:8:Tyes--0217
ADEH290397:0:Tyes1110
AEHR187272:0:Tyes0--296
AFER243159:0:Tyes---0
AHYD196024:0:Tyes1110
AMAR329726:9:Tyes---0
AMET293826:0:Tyes0002976
AORE350688:0:Tyes---0
ASAL382245:5:Tyes0001
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