CANDIDATE ID: 376

CANDIDATE ID: 376

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9965567e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    5.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7990 (fruB) (b2169)
   Products of gene:
     - FRUB-MONOMER (FruB)
     - CPLX-158 (fructose PTS transporter)
       Reactions:
        D-fructose[periplasmic space] + phosphoenolpyruvate  ->  fructose-1-phosphate[cytosol] + pyruvate

- EG11863 (frvB) (b3899)
   Products of gene:
     - FRVB-MONOMER (FrvB)
     - CPLX-159 (EIIABCFrv)

- EG10337 (fruK) (b2168)
   Products of gene:
     - 1-PFK-MONOMER (1-phosphofructokinase monomer)
     - 1-PFK (1-phosphofructokinase)
       Reactions:
        ATP + fructose-1-phosphate  ->  ADP + fructose-1,6-bisphosphate + 2 H+
         In pathways
         PWY0-1314 (fructose degradation)

- EG10336 (fruA) (b2167)
   Products of gene:
     - FRUA-MONOMER (FruA)
     - CPLX-158 (fructose PTS transporter)
       Reactions:
        D-fructose[periplasmic space] + phosphoenolpyruvate  ->  fructose-1-phosphate[cytosol] + pyruvate



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 225
Effective number of orgs (counting one per cluster within 468 clusters): 137

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A4
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110184
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103314
XCAM487884 Xanthomonas campestris pv. paulliniae4
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-104
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80044
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339134
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3064
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB44
TSP28240 Thermotoga sp.4
TSP1755 Thermoanaerobacter sp.4
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332234
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
STHE292459 ncbi Symbiobacterium thermophilum IAM 148634
SSUI391296 ncbi Streptococcus suis 98HAH334
SSUI391295 ncbi Streptococcus suis 05ZYH333
SSON300269 ncbi Shigella sonnei Ss0464
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153053
SPYO370554 ncbi Streptococcus pyogenes MGAS107504
SPYO370553 ncbi Streptococcus pyogenes MGAS20964
SPYO370552 ncbi Streptococcus pyogenes MGAS102704
SPYO370551 ncbi Streptococcus pyogenes MGAS94294
SPYO319701 ncbi Streptococcus pyogenes MGAS61804
SPYO293653 ncbi Streptococcus pyogenes MGAS50054
SPYO286636 ncbi Streptococcus pyogenes MGAS103944
SPYO198466 ncbi Streptococcus pyogenes MGAS3154
SPYO193567 ncbi Streptococcus pyogenes SSI-14
SPYO186103 ncbi Streptococcus pyogenes MGAS82324
SPYO160490 ncbi Streptococcus pyogenes M1 GAS4
SPRO399741 ncbi Serratia proteamaculans 5684
SPNE488221 ncbi Streptococcus pneumoniae 705853
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-63
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-143
SPNE171101 ncbi Streptococcus pneumoniae R64
SPNE170187 ncbi Streptococcus pneumoniae G543
SPNE1313 Streptococcus pneumoniae3
SMUT210007 ncbi Streptococcus mutans UA1594
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14354
SGOR29390 Streptococcus gordonii Challis4
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23383
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122284
SEPI176279 ncbi Staphylococcus epidermidis RP62A4
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SCO ncbi Streptomyces coelicolor A3(2)3
SBOY300268 ncbi Shigella boydii Sb2274
SAVE227882 ncbi Streptomyces avermitilis MA-46803
SAUR93062 ncbi Staphylococcus aureus aureus COL4
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83254
SAUR426430 ncbi Staphylococcus aureus aureus Newman4
SAUR418127 ncbi Staphylococcus aureus aureus Mu34
SAUR367830 Staphylococcus aureus aureus USA3004
SAUR359787 ncbi Staphylococcus aureus aureus JH14
SAUR359786 ncbi Staphylococcus aureus aureus JH94
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4764
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2524
SAUR273036 ncbi Staphylococcus aureus RF1224
SAUR196620 ncbi Staphylococcus aureus aureus MW24
SAUR158879 ncbi Staphylococcus aureus aureus N3154
SAUR158878 ncbi Staphylococcus aureus aureus Mu504
SAGA211110 ncbi Streptococcus agalactiae NEM3164
SAGA208435 ncbi Streptococcus agalactiae 2603V/R4
SAGA205921 ncbi Streptococcus agalactiae A9094
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170254
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170294
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.14
RSP101510 ncbi Rhodococcus jostii RHA13
RSOL267608 ncbi Ralstonia solanacearum GMI10004
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332093
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111704
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15014
PPUT76869 ncbi Pseudomonas putida GB-14
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS94
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257454
PMUL272843 ncbi Pasteurella multocida multocida Pm703
PMEN399739 ncbi Pseudomonas mendocina ymp4
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 374
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-14
PENT384676 ncbi Pseudomonas entomophila L484
PAER208964 ncbi Pseudomonas aeruginosa PAO14
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA144
PACN267747 ncbi Propionibacterium acnes KPA1712024
OIHE221109 ncbi Oceanobacillus iheyensis HTE8314
NSP35761 Nocardioides sp.3
NFAR247156 ncbi Nocardia farcinica IFM 101523
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-14
MTHE264732 ncbi Moorella thermoacetica ATCC 390734
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSME246196 ncbi Mycobacterium smegmatis MC2 1553
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG14
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK4
MFLO265311 ncbi Mesoplasma florum L13
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53344
LSAK314315 ncbi Lactobacillus sakei sakei 23K4
LPLA220668 ncbi Lactobacillus plantarum WCFS14
LMON265669 ncbi Listeria monocytogenes 4b F23654
LMON169963 ncbi Listeria monocytogenes EGD-e4
LLAC272623 ncbi Lactococcus lactis lactis Il14034
LLAC272622 ncbi Lactococcus lactis cremoris SK114
LJOH257314 ncbi Lactobacillus johnsonii NCC 5333
LINN272626 ncbi Listeria innocua Clip112624
LHEL405566 ncbi Lactobacillus helveticus DPC 45713
LGAS324831 ncbi Lactobacillus gasseri ATCC 333234
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118423
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3653
LCAS321967 ncbi Lactobacillus casei ATCC 3344
LACI272621 ncbi Lactobacillus acidophilus NCFM4
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
HMAR272569 ncbi Haloarcula marismortui ATCC 430494
HINF71421 ncbi Haemophilus influenzae Rd KW204
HINF374930 ncbi Haemophilus influenzae PittEE4
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237794
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-24
GKAU235909 ncbi Geobacillus kaustophilus HTA4264
GBET391165 ncbi Granulibacter bethesdensis CGDNIH14
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255863
FMAG334413 ncbi Finegoldia magna ATCC 293283
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
EFAE226185 ncbi Enterococcus faecalis V5834
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DRAD243230 ncbi Deinococcus radiodurans R13
DNOD246195 ncbi Dichelobacter nodosus VCS1703A4
DGEO319795 ncbi Deinococcus geothermalis DSM 113004
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CPER289380 ncbi Clostridium perfringens SM1014
CPER195103 ncbi Clostridium perfringens ATCC 131244
CPER195102 ncbi Clostridium perfringens 134
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3824
CMIC31964 ncbi Clavibacter michiganensis sepedonicus4
CDIF272563 ncbi Clostridium difficile 6304
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto4
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6574
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B3
CBOT498213 ncbi Clostridium botulinum B1 str. Okra4
CBOT441772 ncbi Clostridium botulinum F str. Langeland4
CBOT441771 ncbi Clostridium botulinum A str. Hall4
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193974
CBOT36826 Clostridium botulinum A4
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80524
CACE272562 ncbi Clostridium acetobutylicum ATCC 8244
BWEI315730 ncbi Bacillus weihenstephanensis KBAB44
BTUR314724 ncbi Borrelia turicatae 91E1353
BTHU412694 ncbi Bacillus thuringiensis Al Hakam4
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-274
BTHA271848 ncbi Burkholderia thailandensis E2644
BSUB ncbi Bacillus subtilis subtilis 1684
BPUM315750 ncbi Bacillus pumilus SAFR-0324
BLIC279010 ncbi Bacillus licheniformis ATCC 145804
BHER314723 ncbi Borrelia hermsii DAH3
BHAL272558 ncbi Bacillus halodurans C-1254
BGAR290434 ncbi Borrelia garinii PBi3
BCLA66692 ncbi Bacillus clausii KSM-K164
BCER572264 ncbi Bacillus cereus 03BB1024
BCER405917 Bacillus cereus W4
BCER315749 ncbi Bacillus cytotoxicus NVH 391-984
BCER288681 ncbi Bacillus cereus E33L4
BCER226900 ncbi Bacillus cereus ATCC 145794
BBUR224326 ncbi Borrelia burgdorferi B313
BANT592021 ncbi Bacillus anthracis A02484
BANT568206 ncbi Bacillus anthracis CDC 6844
BANT261594 ncbi Bacillus anthracis Ames Ancestor4
BANT260799 ncbi Bacillus anthracis Sterne4
BAMY326423 ncbi Bacillus amyloliquefaciens FZB424
BAFZ390236 ncbi Borrelia afzelii PKo3
ASP62977 ncbi Acinetobacter sp. ADP14
ASP1667 Arthrobacter sp.4
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AMET293826 ncbi Alkaliphilus metalliredigens QYMF4
AHYD196024 Aeromonas hydrophila dhakensis4
ACRY349163 ncbi Acidiphilium cryptum JF-54
AAVE397945 ncbi Acidovorax citrulli AAC00-14
AAUR290340 ncbi Arthrobacter aurescens TC14


Names of the homologs of the genes in the group in each of these orgs
  G7990   EG11863   EG10337   EG10336   
YPSE349747 YPSIP31758_2683YPSIP31758_2681YPSIP31758_2682YPSIP31758_2681
YPSE273123 YPTB1329YPTB1331YPTB1330YPTB1331
YPES386656 YPDSF_2399YPDSF_2397YPDSF_2398YPDSF_2397
YPES377628 YPN_2681YPN_2679YPN_2680YPN_2679
YPES360102 YPA_1015YPA_1017YPA_1016YPA_1017
YPES349746 YPANGOLA_A1524YPANGOLA_A1526YPANGOLA_A1525YPANGOLA_A1526
YPES214092 YPO1298YPO1300YPO1299YPO1300
YPES187410 Y2887Y2885Y2886Y2885
YENT393305 YE1447YE1449YE1448YE1449
XORY360094 XOOORF_1892XOOORF_1890XOOORF_1891XOOORF_1890
XORY342109 XOO2650XOO2652XOO2651XOO2652
XORY291331 XOO2810XOO2812XOO2811XOO2812
XCAM487884 XCC-B100_1802XCC-B100_1800XCC-B100_1801XCC-B100_1800
XCAM316273 XCAORF_2650XCAORF_2652XCAORF_2651XCAORF_2652
XCAM314565 XC_1744XC_1742XC_1743XC_1742
XCAM190485 XCC2370XCC2372XCC2371XCC2372
XAXO190486 XAC2501XAC2503XAC2502XAC2503
VVUL216895 VV2_0200VV2_0198VV2_0199VV2_0198
VVUL196600 VVA0706VVA0704VVA0705VVA0704
VPAR223926 VPA0813VPA0811VPA0812VPA0811
VFIS312309 VFA0942VFA0940VFA0941VFA0940
VCHO345073 VC0395_0451VC0395_0449VC0395_0450VC0395_0449
VCHO VCA0518VCA0516VCA0517VCA0516
TTEN273068 TTE0341TTE2585TTE2587TTE2585
TSP28240 TRQ2_0638TRQ2_0639TRQ2_0641TRQ2_0639
TSP1755 TETH514_0270TETH514_0578TETH514_0576TETH514_0826
TPSE340099 TETH39_1940TETH39_0153TETH39_0151TETH39_0153
STYP99287 STM2206STM2204STM2205STM2204
STHE292459 STH795STH796STH1246STH796
SSUI391296 SSU98_1215SSU98_0825SSU98_0824SSU98_0825
SSUI391295 SSU05_1201SSU05_0823SSU05_0824
SSON300269 SSO_2225SSO_4069SSO_2224SSO_2223
SSAP342451 SSP0726SSP2017SSP2018
SPYO370554 MGAS10750_SPY1223MGAS10750_SPY0753MGAS10750_SPY0752MGAS10750_SPY0753
SPYO370553 MGAS2096_SPY1186MGAS2096_SPY0733MGAS2096_SPY1661MGAS2096_SPY0733
SPYO370552 MGAS10270_SPY1191MGAS10270_SPY0721MGAS10270_SPY0720MGAS10270_SPY0721
SPYO370551 MGAS9429_SPY1168MGAS9429_SPY0717MGAS9429_SPY0716MGAS9429_SPY0717
SPYO319701 M28_SPY1114M28_SPY0643M28_SPY0642M28_SPY0643
SPYO293653 M5005_SPY1121M5005_SPY0662M5005_SPY0661M5005_SPY0662
SPYO286636 M6_SPY1095M6_SPY0681M6_SPY0680M6_SPY0681
SPYO198466 SPYM3_1047SPYM3_0580SPYM3_0579SPYM3_0580
SPYO193567 SPS0814SPS1274SPS1275SPS1274
SPYO186103 SPYM18_1385SPYM18_0914SPYM18_0913SPYM18_0914
SPYO160490 SPY1373SPY0855SPY0854SPY0855
SPRO399741 SPRO_3230SPRO_3228SPRO_3229SPRO_3228
SPNE488221 SP70585_0469SP70585_0914SP70585_0915
SPNE487214 SPH_0506SPH_0980SPH_0981
SPNE487213 SPT_1046SPT_1325SPT_1324
SPNE171101 SPR0358SPR0780SPR0779SPR0780
SPNE170187 SPN06005SPN03041SPN03043
SPNE1313 SPJ_0385SPJ_0817SPJ_0818
SMUT210007 SMU_1183SMU_872SMU_871SMU_114
SHIGELLA FRUBFRVBFRUKFRUA
SHAE279808 SH0233SH2194SH2195SH2194
SGOR29390 SGO_1556SGO_1113SGO_1112SGO_1113
SFLE373384 SFV_2244SFV_3596SFV_2243SFV_2242
SFLE198214 AAN43773.1AAN45410.1AAN43772.1AAN43771.1
SERY405948 SACE_2275SACE_2273SACE_2275
SEPI176280 SE_0781SE_2228SE_0471SE_2228
SEPI176279 SERP0669SERP2260SERP0358SERP2260
SENT454169 SEHA_C2442SEHA_C2440SEHA_C2441SEHA_C2440
SENT321314 SCH_2222SCH_2220SCH_2221SCH_2220
SENT295319 SPA0645SPA0647SPA0646SPA0647
SENT220341 STY2442STY2439STY2441STY2439
SENT209261 T0650T0651T0649T0651
SDYS300267 SDY_2317SDY_2315SDY_2316SDY_2315
SCO SCO3196SCO4283SCO3196
SBOY300268 SBO_2155SBO_3915SBO_2156SBO_2157
SAVE227882 SAV3688SAV3942SAV3688
SAUR93062 SACOL2148SACOL2663SACOL0758SACOL2663
SAUR93061 SAOUHSC_02402SAOUHSC_02975SAOUHSC_00707SAOUHSC_02975
SAUR426430 NWMN_2059NWMN_2540NWMN_0668NWMN_2540
SAUR418127 SAHV_2142SAHV_2625SAHV_0696SAHV_2625
SAUR367830 SAUSA300_2107SAUSA300_2576SAUSA300_0684SAUSA300_2576
SAUR359787 SAURJH1_2228SAURJH1_2721SAURJH1_0739SAURJH1_2721
SAUR359786 SAURJH9_2190SAURJH9_2665SAURJH9_0723SAURJH9_2665
SAUR282459 SAS2059SAS2527SAS0664SAS2527
SAUR282458 SAR2246SAR2720SAR0752SAR2720
SAUR273036 SAB2038SAB2516SAB0648SAB2516
SAUR196620 MW2084MW2562MW0661MW2562
SAUR158879 SA1962SA2434SA0654SA2434
SAUR158878 SAV2158SAV2641SAV0699SAV2641
SAGA211110 GBS0839GBS1416GBS1417GBS1416
SAGA208435 SAG_0821SAG_1346SAG_1347SAG_1346
SAGA205921 SAK_0945SAK_1377SAK_1378SAK_1377
RSPH349102 RSPH17025_0610RSPH17025_0612RSPH17025_0611RSPH17025_0612
RSPH349101 RSPH17029_0433RSPH17029_0435RSPH17029_0434RSPH17029_0435
RSPH272943 RSP_1786RSP_1788RSP_1787RSP_1788
RSP101510 RHA1_RO06782RHA1_RO06783RHA1_RO06782
RSOL267608 RSC2861RSC2863RSC2862RSC2863
RSAL288705 RSAL33209_3143RSAL33209_3141RSAL33209_3143
RRUB269796 RRU_A1972RRU_A1970RRU_A1971RRU_A1970
PSYR223283 PSPTO_0954PSPTO_0956PSPTO_0955PSPTO_0956
PSYR205918 PSYR_0821PSYR_0823PSYR_0822PSYR_0823
PSTU379731 PST_0988PST_0990PST_0989PST_0990
PPUT76869 PPUTGB1_0827PPUTGB1_0829PPUTGB1_0828PPUTGB1_0829
PPUT351746 PPUT_0816PPUT_0818PPUT_0817PPUT_0818
PPUT160488 PP_0793PP_0795PP_0794PP_0795
PPRO298386 PBPRA1573PBPRA1575PBPRA1574PBPRA1575
PPEN278197 PEPE_0609PEPE_1164PEPE_0141PEPE_0142
PMUL272843 PM1797PM1796PM1795
PMEN399739 PMEN_0786PMEN_0788PMEN_0787PMEN_0788
PLUM243265 PLU1992PLU1993PLU2858PLU1993
PING357804 PING_3551PING_3553PING_3552PING_3553
PFLU220664 PFL_0859PFL_0861PFL_0860PFL_0861
PFLU216595 PFLU0804PFLU0806PFLU0805PFLU0806
PFLU205922 PFL_0793PFL_0795PFL_0794PFL_0795
PENT384676 PSEEN0932PSEEN0934PSEEN0933PSEEN0934
PAER208964 PA3562PA3560PA3561PA3560
PAER208963 PA14_18250PA14_18275PA14_18260PA14_18275
PACN267747 PPA0919PPA0142PPA0143PPA2233
OIHE221109 OB2601OB0838OB0839OB0838
NSP35761 NOCA_3164NOCA_3183NOCA_3184
NFAR247156 NFA28540NFA28550NFA28540
MVAN350058 MVAN_5589MVAN_0094MVAN_0095MVAN_0094
MTHE264732 MOTH_0015MOTH_0013MOTH_0012MOTH_0013
MSUC221988 MS2180MS2178MS2179MS2178
MSME246196 MSMEG_0085MSMEG_0086MSMEG_0085
MMYC272632 MSC_0842MSC_0846MSC_0832MSC_0846
MGIL350054 MFLV_1219MFLV_0752MFLV_0751MFLV_0752
MFLO265311 MFL565MFL181MFL180
LWEL386043 LWE0986LWE2287LWE0799LWE0600
LSAK314315 LSA1463LSA1050LSA1049LSA1050
LPLA220668 LP_0232LP_3518LP_2096LP_3518
LMON265669 LMOF2365_0442LMOF2365_2305LMOF2365_2306LMOF2365_0662
LMON169963 LMO0426LMO2335LMO2336LMO0633
LLAC272623 L32907L185031L0032L185031
LLAC272622 LACR_0029LACR_1033LACR_1032LACR_1033
LJOH257314 LJ_0816LJ_0572LJ_0145
LINN272626 LIN1001LIN2429LIN2430LIN2429
LHEL405566 LHV_0686LHV_1844LHV_1845
LGAS324831 LGAS_1361LGAS_1726LGAS_0148LGAS_0149
LDEL390333 LDB0576LDB2040LDB2041
LDEL321956 LBUL_0512LBUL_1887LBUL_1888
LCAS321967 LSEI_2886LSEI_1347LSEI_1348LSEI_2654
LACI272621 LBA0639LBA1777LBA1778LBA1777
KPNE272620 GKPORF_B1886GKPORF_B1884GKPORF_B1885GKPORF_B1884
HMAR272569 PNG7388PNG7387RRNAC0342PNG7392
HINF71421 HI_0448HI_0446HI_0447HI_0446
HINF374930 CGSHIEE_00750CGSHIEE_00760CGSHIEE_00755CGSHIEE_00760
HINF281310 NTHI0575NTHI0573NTHI0574NTHI0573
HAUR316274 HAUR_4712HAUR_4714HAUR_4713HAUR_4714
GTHE420246 GTNG_1845GTNG_1726GTNG_1727GTNG_1726
GKAU235909 GK1946GK1838GK1839GK1838
GBET391165 GBCGDNIH1_0412GBCGDNIH1_0410GBCGDNIH1_0411GBCGDNIH1_0410
FNUC190304 FN1794FN1441FN1440
FMAG334413 FMG_1284FMG_1285FMG_1284
ESP42895 ENT638_2763ENT638_2761ENT638_2762ENT638_2761
EFER585054 EFER_2256EFER_3873EFER_2255EFER_2254
EFAE226185 EF_0412EF_0717EF_0693EF_0694
ECOO157 FRUBFRVBFRUKFRUA
ECOL83334 ECS3061ECS4825ECS3060ECS3059
ECOL585397 ECED1_2617ECED1_2615ECED1_2616ECED1_2615
ECOL585057 ECIAI39_2309ECIAI39_3099ECIAI39_2308ECIAI39_2307
ECOL585056 ECUMN_2505ECUMN_2503ECUMN_2504ECUMN_2503
ECOL585055 EC55989_2422EC55989_4377EC55989_2421EC55989_2420
ECOL585035 ECS88_2317ECS88_2315ECS88_2316ECS88_2315
ECOL585034 ECIAI1_2249ECIAI1_4104ECIAI1_2248ECIAI1_2247
ECOL481805 ECOLC_1479ECOLC_4118ECOLC_1480ECOLC_1481
ECOL469008 ECBD_1489ECBD_4126ECBD_1490ECBD_1491
ECOL439855 ECSMS35_2316ECSMS35_4289ECSMS35_2315ECSMS35_2314
ECOL413997 ECB_02098ECB_03784ECB_02097ECB_02096
ECOL409438 ECSE_2437ECSE_4186ECSE_2436ECSE_2435
ECOL405955 APECO1_4385APECO1_4387APECO1_4386APECO1_4387
ECOL364106 UTI89_C2444UTI89_C2442UTI89_C2443UTI89_C2442
ECOL362663 ECP_2209ECP_2207ECP_2208ECP_2207
ECOL331111 ECE24377A_2466ECE24377A_4429ECE24377A_2465ECE24377A_2464
ECOL316407 ECK2162:JW2156:B2169ECK3892:JW5562:B3899ECK2161:JW2155:B2168ECK2160:JW2154:B2167
ECOL199310 C2704C2702C2703C2702
ECAR218491 ECA2729ECA2727ECA2728ECA2727
DRAD243230 DR_B0073DR_B0074DR_B0073
DNOD246195 DNO_0610DNO_0610DNO_0583DNO_0610
DGEO319795 DGEO_2173DGEO_2175DGEO_2174DGEO_2175
CVIO243365 CV_3052CV_3054CV_3053CV_3054
CSAL290398 CSAL_2648CSAL_2646CSAL_2647CSAL_2646
CPER289380 CPR_1641CPR_0550CPR_0551CPR_0550
CPER195103 CPF_1923CPF_0564CPF_0565CPF_0564
CPER195102 CPE1669CPE0584CPE0585CPE0584
CMIC443906 CMM_1754CMM_1504CMM_1503CMM_1504
CMIC31964 CMS1998CMS1801CMS1802CMS1801
CDIF272563 CD2332CD2269CD2270CD2269
CBOT536232 CLM_2690CLM_2208CLM_1923CLM_2208
CBOT515621 CLJ_B2622CLJ_B2196CLJ_B1944CLJ_B2196
CBOT508765 CLL_A2296CLL_A2297CLL_A2296
CBOT498213 CLD_2243CLD_2633CLD_2876CLD_2633
CBOT441772 CLI_2453CLI_2058CLI_1758CLI_2058
CBOT441771 CLC_2244CLC_1937CLC_1706CLC_1937
CBOT441770 CLB_2261CLB_1931CLB_1698CLB_1931
CBOT36826 CBO2398CBO1991CBO1763CBO1991
CBEI290402 CBEI_0244CBEI_1844CBEI_1843CBEI_1844
CACE272562 CAC0156CAC0234CAC0232CAC0234
BWEI315730 BCERKBAB4_3878BCERKBAB4_3482BCERKBAB4_3483BCERKBAB4_3482
BTUR314724 BT0408BT0630BT0408
BTHU412694 BALH_3665BALH_4764BALH_3345BALH_3344
BTHU281309 BT9727_3790BT9727_3462BT9727_3463BT9727_3462
BTHA271848 BTH_II0906BTH_II0908BTH_II0907BTH_II0908
BSUB BSU03982BSU12010BSU14390BSU14400
BPUM315750 BPUM_0370BPUM_1769BPUM_1335BPUM_1769
BLIC279010 BL03568BL00289BL01605BL01606
BHER314723 BH0629BH0630BH0408
BHAL272558 BH3852BH0828BH0827BH0828
BGAR290434 BG0410BG0651BG0410
BCLA66692 ABC2927ABC1271ABC1270ABC1271
BCER572264 BCA_4161BCA_5404BCA_3808BCA_3807
BCER405917 BCE_4116BCE_3744BCE_3745BCE_3744
BCER315749 BCER98_2748BCER98_1170BCER98_2395BCER98_2394
BCER288681 BCE33L3805BCE33L3476BCE33L3477BCE33L3476
BCER226900 BC_4049BC_3718BC_3719BC_3718
BBUR224326 BB_0408BB_0630BB_0408
BANT592021 BAA_4291BAA_3869BAA_3870BAA_3869
BANT568206 BAMEG_4309BAMEG_0787BAMEG_0786BAMEG_0787
BANT261594 GBAA4268GBAA3846GBAA3847GBAA3846
BANT260799 BAS3959BAS3563BAS3564BAS3563
BAMY326423 RBAM_004240RBAM_024200RBAM_014130RBAM_014140
BAFZ390236 BAPKO_0425BAPKO_0672BAPKO_0425
ASP62977 ACIAD1990ACIAD1993ACIAD1992ACIAD1993
ASP1667 ARTH_4004ARTH_0299ARTH_0237ARTH_0299
ASAL382245 ASA_1939ASA_1941ASA_1940ASA_1941
APLE434271 APJL_0361APJL_0359APJL_0360APJL_0359
APLE416269 APL_0345APL_0343APL_0344APL_0343
AMET293826 AMET_4269AMET_0828AMET_0826AMET_0828
AHYD196024 AHA_2348AHA_2346AHA_2347AHA_2346
ACRY349163 ACRY_0187ACRY_0189ACRY_0188ACRY_0189
AAVE397945 AAVE_4252AAVE_4250AAVE_4251AAVE_4250
AAUR290340 AAUR_3859AAUR_0294AAUR_0349AAUR_0294


Organism features enriched in list (features available for 212 out of the 225 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 3.188e-116292
Arrangment:Clusters 0.00001081517
Arrangment:Pairs 3.229e-968112
Disease:Botulism 0.006168455
Disease:Bubonic_plague 0.002209166
Disease:Dysentery 0.002209166
Disease:Gastroenteritis 0.00272631013
Disease:Meningitis 0.009942967
Disease:Pneumonia 0.0058988912
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00001241111
Disease:Wide_range_of_infections 0.00001241111
Endospores:Yes 3.611e-83853
GC_Content_Range4:0-40 0.008551189213
GC_Content_Range7:60-70 0.004443937134
Genome_Size_Range5:0-2 5.656e-732155
Genome_Size_Range5:4-6 4.811e-896184
Genome_Size_Range9:0-1 0.0083752427
Genome_Size_Range9:1-2 0.000035328128
Genome_Size_Range9:4-5 0.00010755196
Genome_Size_Range9:5-6 0.00082754588
Gram_Stain:Gram_Neg 5.293e-696333
Gram_Stain:Gram_Pos 8.696e-23105150
Habitat:Aquatic 1.779e-81191
Habitat:Multiple 8.494e-893178
Habitat:Specialized 4.970e-7453
Optimal_temp.:- 0.001892978257
Optimal_temp.:25-35 0.00016751214
Optimal_temp.:30-35 0.009942967
Optimal_temp.:30-37 7.669e-91818
Oxygen_Req:Aerobic 0.001305552185
Oxygen_Req:Anaerobic 0.000083321102
Oxygen_Req:Facultative 3.537e-23128201
Pathogenic_in:Human 4.548e-12116213
Pathogenic_in:No 1.366e-949226
Pathogenic_in:Plant 0.00298231115
Salinity:Non-halophilic 0.000272154106
Shape:Coccus 0.00001634782
Shape:Rod 0.0008799143347
Shape:Spiral 0.0086646634
Temp._range:Hyperthermophilic 0.0003304123
Temp._range:Mesophilic 3.525e-11200473
Temp._range:Thermophilic 0.0021589535



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 377
Effective number of orgs (counting one per cluster within 468 clusters): 317

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VEIS391735 ncbi Verminephrobacter eiseniae EF01-20
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79010
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TROS309801 ncbi Thermomicrobium roseum DSM 51591
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 51
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB81
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX1
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
SSP94122 ncbi Shewanella sp. ANA-30
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP644076 Silicibacter sp. TrichCH4B0
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP292414 ncbi Ruegeria sp. TM10400
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSED425104 ncbi Shewanella sediminis HAW-EB30
SRUB309807 ncbi Salinibacter ruber DSM 138551
SPEA398579 ncbi Shewanella pealeana ATCC 7003450
SONE211586 ncbi Shewanella oneidensis MR-10
SMEL266834 ncbi Sinorhizobium meliloti 10210
SMED366394 ncbi Sinorhizobium medicae WSM4190
SMAR399550 ncbi Staphylothermus marinus F10
SLOI323850 ncbi Shewanella loihica PV-40
SLAC55218 Ruegeria lacuscaerulensis0
SHAL458817 ncbi Shewanella halifaxensis HAW-EB40
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2170
SDEG203122 ncbi Saccharophagus degradans 2-400
SBAL402882 ncbi Shewanella baltica OS1850
SBAL399599 ncbi Shewanella baltica OS1950
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP357808 ncbi Roseiflexus sp. RS-11
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-30
RPAL316058 ncbi Rhodopseudomonas palustris HaA21
RPAL316057 ncbi Rhodopseudomonas palustris BisB51
RPAL316056 ncbi Rhodopseudomonas palustris BisB180
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RPAL258594 ncbi Rhodopseudomonas palustris CGA0091
RMET266264 ncbi Ralstonia metallidurans CH340
RMAS416276 ncbi Rickettsia massiliae MTU50
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38410
RFER338969 ncbi Rhodoferax ferrireducens T1180
RFEL315456 ncbi Rickettsia felis URRWXCal20
REUT381666 ncbi Ralstonia eutropha H160
REUT264198 ncbi Ralstonia eutropha JMP1340
RETL347834 ncbi Rhizobium etli CFN 420
RDEN375451 ncbi Roseobacter denitrificans OCh 1140
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139411
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 81
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP296591 ncbi Polaromonas sp. JS6661
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PNAP365044 ncbi Polaromonas naphthalenivorans CJ21
PMOB403833 ncbi Petrotoga mobilis SJ951
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PCAR338963 ncbi Pelobacter carbinolicus DSM 23801
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OCAR504832 ncbi Oligotropha carboxidovorans OM50
OANT439375 ncbi Ochrobactrum anthropi ATCC 491880
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16221
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT1
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 531
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP409 Methylobacterium sp.1
MSP400668 ncbi Marinomonas sp. MWYL10
MSP266779 ncbi Chelativorans sp. BNC11
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP1
MPNE272634 ncbi Mycoplasma pneumoniae M1291
MPET420662 ncbi Methylibium petroleiphilum PM10
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLOT266835 ncbi Mesorhizobium loti MAFF3030990
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHUN323259 ncbi Methanospirillum hungatei JF-10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MEXT419610 ncbi Methylobacterium extorquens PA11
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LCHO395495 ncbi Leptothrix cholodnii SP-60
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
JSP375286 ncbi Janthinobacterium sp. Marseille0
JSP290400 ncbi Jannaschia sp. CCS10
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM228400 ncbi Haemophilus somnus 23361
HSOM205914 ncbi Haemophilus somnus 129PT1
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMOD498761 ncbi Heliobacterium modesticaldum Ice11
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL11
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HCHE349521 ncbi Hahella chejuensis KCTC 23960
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GURA351605 ncbi Geobacter uraniireducens Rf41
GSUL243231 ncbi Geobacter sulfurreducens PCA1
GOXY290633 ncbi Gluconobacter oxydans 621H0
GMET269799 ncbi Geobacter metallireducens GS-151
GFOR411154 ncbi Gramella forsetii KT08030
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DSHI398580 ncbi Dinoroseobacter shibae DFL 121
DRED349161 ncbi Desulfotomaculum reducens MI-10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DHAF138119 ncbi Desulfitobacterium hafniense Y510
DETH243164 ncbi Dehalococcoides ethenogenes 1951
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
DARO159087 ncbi Dechloromonas aromatica RCB0
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CSP501479 Citreicella sp. SE450
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT1
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29010
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN1
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB150
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BVIE269482 ncbi Burkholderia vietnamiensis G41
BTRI382640 ncbi Bartonella tribocorum CIP 1054761
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSUI470137 ncbi Brucella suis ATCC 234450
BSUI204722 ncbi Brucella suis 13300
BSP376 Bradyrhizobium sp.1
BSP36773 Burkholderia sp.0
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)1
BQUI283165 ncbi Bartonella quintana Toulouse1
BPSE320373 ncbi Burkholderia pseudomallei 6680
BPSE320372 ncbi Burkholderia pseudomallei 1710b0
BPSE272560 ncbi Burkholderia pseudomallei K962430
BPET94624 Bordetella petrii0
BPER257313 ncbi Bordetella pertussis Tohama I0
BPAR257311 ncbi Bordetella parapertussis 128220
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23080
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M0
BMAL320389 ncbi Burkholderia mallei NCTC 102470
BMAL320388 ncbi Burkholderia mallei SAVP10
BMAL243160 ncbi Burkholderia mallei ATCC 233440
BLON206672 ncbi Bifidobacterium longum NCC27050
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1100
BHEN283166 ncbi Bartonella henselae Houston-11
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BCEN331272 ncbi Burkholderia cenocepacia HI24240
BCEN331271 ncbi Burkholderia cenocepacia AU 10540
BCAN483179 ncbi Brucella canis ATCC 233650
BBRO257310 ncbi Bordetella bronchiseptica RB500
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)1
BAMB398577 ncbi Burkholderia ambifaria MC40-61
BAMB339670 ncbi Burkholderia ambifaria AMMD0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9410
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN11
ASP62928 ncbi Azoarcus sp. BH720
ASP232721 ncbi Acidovorax sp. JS421
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG11
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232701
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C1
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ACAU438753 ncbi Azorhizobium caulinodans ORS 5711
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAU360910 ncbi Bordetella avium 197N0
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3451
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G7990   EG11863   EG10337   EG10336   
ZMOB264203
XFAS405440
XFAS183190
XFAS160492
XAUT78245
WSUC273121
WPIP955
WPIP80849
VEIS391735
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTUR377629
TTHE300852
TTHE262724
TROS309801 TRD_A0402
TPET390874 TPET_0099
TPEN368408 TPEN_1091
TPAL243276
TMAR243274 TM_0828
TLET416591
TKOD69014
TFUS269800 TFU_0696
TERY203124
TELO197221
TDEN326298
TDEN292415
TDEN243275
TCRU317025
TACI273075
SWOL335541
STRO369723
STOK273063
SSP94122
SSP84588
SSP64471
SSP644076
SSP387093
SSP321332
SSP321327
SSP292414
SSP1148
SSP1131
SSOL273057
SSED425104
SRUB309807 SRU_1873
SPEA398579
SONE211586
SMEL266834
SMED366394
SMAR399550
SLOI323850
SLAC55218
SHAL458817
SFUM335543
SELO269084
SDEN318161
SDEG203122
SBAL402882
SBAL399599
SALA317655
SACI56780
SACI330779
RTYP257363
RSP357808 ROSERS_0693
RRIC452659
RRIC392021
RPRO272947
RPOM246200
RPAL316058 RPB_0444
RPAL316057 RPD_0347
RPAL316056
RPAL316055
RPAL258594 RPA0379
RMET266264
RMAS416276
RLEG216596
RFER338969
RFEL315456
REUT381666
REUT264198
RETL347834
RDEN375451
RCON272944
RCAS383372 RCAS_0209
RCAN293613
RBEL391896
RBEL336407
RALB246199 GRAORF_3289
RAKA293614
PTOR263820
PTHE370438
PSP56811
PSP312153
PSP296591 BPRO_2756
PSP117
PRUM264731
PNAP365044 PNAP_2080
PMOB403833 PMOB_1788
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PHOR70601
PHAL326442
PGIN242619
PFUR186497
PDIS435591
PCRY335284
PCAR338963 PCAR_1930
PATL342610
PAST100379
PARS340102
PARC259536
PAER178306
PABY272844
OTSU357244
OCAR504832
OANT439375
NWIN323098
NSP387092
NSP103690
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NEUT335283
NEUR228410
NARO279238
MXAN246197 MXAN_2372
MTUB419947
MTUB336982
MTHE349307 MTHE_0686
MTHE187420
MTBRV
MTBCDC
MSYN262723 MS53_0394
MSTA339860
MSP409 M446_0229
MSP400668
MSP266779 MESO_3575
MSED399549
MPUL272635 MYPU_1290
MPNE272634 MPN078
MPET420662
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407
MMAR267377
MMAG342108
MLOT266835
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHUN323259
MFLA265072
MEXT419610 MEXT_1234
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAQU351348
MAER449447
MAEO419665
MACE188937
MABS561007
LREU557436 LREU_1325
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LMES203120 LEUM_1780
LINT363253
LINT267671
LINT189518
LCHO395495
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
KRAD266940 KRAD_1536
JSP375286
JSP290400
ILOI283942
IHOS453591
HWAL362976
HSP64091
HSOM228400 HSM_0825
HSOM205914 HS_1252
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032
HMUK485914 HMUK_2661
HMOD498761 HM1_0837
HHEP235279
HHAL349124 HHAL_2128
HDUC233412
HCHE349521
HBUT415426
HARS204773
HACI382638
GVIO251221
GURA351605 GURA_2966
GSUL243231 GSU_1882
GOXY290633
GMET269799 GMET_1288
GFOR411154
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP106370
FRANT
FPHI484022
FNOD381764 FNOD_1351
FJOH376686
FALN326424
ERUM302409
ERUM254945
ELIT314225
ECHA205920
ECAN269484
DVUL882
DSP255470 CBDBA1296
DSP216389 DEHABAV1_1157
DSHI398580 DSHI_1621
DRED349161
DPSY177439
DOLE96561
DHAF138119
DETH243164 DET_1346
DDES207559
DARO159087
CVES412965
CTRA471473
CTRA471472
CTET212717
CTEP194439
CSUL444179
CSP78
CSP501479
CRUT413404
CPSY167879
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809 CPHY_3901
CPEL335992
CNOV386415 NT01CX_0289
CMUR243161
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CJAP155077
CHYD246194
CHUT269798 CHU_1600
CHOM360107
CGLU196627
CFET360106
CFEL264202
CDIP257309 DIP1430
CDES477974
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBLO291272 BPEN_526
CBLO203907
CAULO
CABO218497
BXEN266265
BVIE269482 BCEP1808_6309
BTRI382640 BT_0154
BTHE226186
BSUI470137
BSUI204722
BSP376 BRADO1575
BSP36773
BSP107806 BU572
BQUI283165 BQ01340
BPSE320373
BPSE320372
BPSE272560
BPET94624
BPER257313
BPAR257311
BOVI236
BMEL359391
BMEL224914
BMAL320389
BMAL320388
BMAL243160
BLON206672
BJAP224911
BHEN283166 BH01410
BFRA295405
BFRA272559
BCIC186490
BCEN331272
BCEN331271
BCAN483179
BBRO257310
BBAC360095
BBAC264462
BAPH372461
BAPH198804 BUSG552
BAMB398577 BAMMC406_6213
BAMB339670
BABO262698
AYEL322098
AVAR240292
AURANTIMONAS
ASP76114 EBD68
ASP62928
ASP232721 AJS_3926
APHA212042
APER272557
AORE350688
ANAE240017 ANA_2658
AMAR329726
AMAR234826
ALAI441768 ACL_0374
AFUL224325
AFER243159 AFE_1278
AEHR187272
ADEH290397 ADEH_0152
ACEL351607
ACAU438753 AZC_0344
ABUT367737
ABOR393595
ABAU360910
ABAC204669 ACID345_0661
AAEO224324


Organism features enriched in list (features available for 351 out of the 377 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.009972299
Arrangment:Chains 5.187e-112792
Arrangment:Clusters 0.0000389217
Arrangment:Pairs 1.006e-939112
Disease:Gastroenteritis 0.0057925313
Endospores:Yes 2.906e-81353
GC_Content_Range4:0-40 0.0019852113213
GC_Content_Range7:0-30 0.00993032147
GC_Content_Range7:60-70 0.009242491134
Genome_Size_Range5:0-2 0.0000531113155
Genome_Size_Range5:4-6 9.387e-882184
Genome_Size_Range9:1-2 0.000080695128
Genome_Size_Range9:4-5 0.00015754296
Genome_Size_Range9:5-6 0.00093254088
Gram_Stain:Gram_Neg 2.423e-6227333
Gram_Stain:Gram_Pos 8.220e-2735150
Habitat:Aquatic 1.784e-97991
Habitat:Multiple 1.336e-779178
Habitat:Specialized 1.708e-64753
Motility:No 0.000210673151
Optimal_temp.:- 0.0003033174257
Optimal_temp.:25-35 0.0004546214
Optimal_temp.:37 0.003177752106
Oxygen_Req:Aerobic 0.0004047129185
Oxygen_Req:Anaerobic 0.000029279102
Oxygen_Req:Facultative 3.894e-2563201
Pathogenic_in:Human 3.105e-995213
Pathogenic_in:No 7.132e-8166226
Pathogenic_in:Plant 0.0013940315
Salinity:Non-halophilic 1.397e-740106
Shape:Coccus 0.00001593282
Shape:Irregular_coccus 0.00015321717
Shape:Rod 0.0038600195347
Shape:Spiral 0.00298482834
Temp._range:Hyperthermophilic 0.00010302223
Temp._range:Mesophilic 4.049e-11256473



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 1
Effective number of orgs (counting one per cluster within 468 clusters): 1

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG1 0.00059031684


Names of the homologs of the genes in the group in each of these orgs
  G7990   EG11863   EG10337   EG10336   
MMYC272632 MSC_0842MSC_0846MSC_0832MSC_0846


Organism features enriched in list (features available for 1 out of the 1 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Contagious_bovine_pleuropneumonia_(CBPP) 0.001715311



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1314 (fructose degradation)2241990.8224
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))1211150.6023
P122-PWY (heterolactic fermentation)1191020.5017
GLUAMCAT-PWY (N-acetylglucosamine degradation I)3562010.4891
PWY-5497 (purine nucleotides degradation IV (anaerobic))1221020.4879
SUCUTIL-PWY (sucrose degradation I)1241030.4872
GLCMANNANAUT-PWY (superpathway of N-acetylglucosamine, N-acetylmannosamine and N-acetylneuraminate degradation)1341060.4685
PWY0-1324 (N-acetylneuraminate and N-acetylmannosamine degradation)1351060.4643
PWY-5480 (pyruvate fermentation to ethanol I)109910.4541
IDNCAT-PWY (L-idonate degradation)2461550.4523
MANNIDEG-PWY (mannitol degradation I)99850.4501
PWY0-1295 (pyrimidine ribonucleosides degradation I)2391500.4376
TEICHOICACID-PWY (teichoic acid (poly-glycerol) biosynthesis)98830.4370
PWY-922 (mevalonate pathway I)1991320.4310
LACTOSECAT-PWY (lactose and galactose degradation I)71660.4244
SERDEG-PWY (L-serine degradation)3491890.4238
PWY-5493 (reductive monocarboxylic acid cycle)2431490.4196
RIBOKIN-PWY (ribose degradation)2791630.4182
P441-PWY (superpathway of N-acetylneuraminate degradation)63600.4128
PWY0-381 (glycerol degradation I)4172080.4077
MANNCAT-PWY (D-mannose degradation)3081720.4061



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11863   EG10337   EG10336   
G79900.9993650.9995280.999505
EG118630.9998320.999853
EG103370.999851
EG10336



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PAIRWISE BLAST SCORES:

  G7990   EG11863   EG10337   EG10336   
G79900.0f0---
EG11863-0.0f0-4.5e-55
EG10337--0.0f0-
EG10336-3.2e-9-0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- CPLX-158 (fructose PTS transporter) (degree of match pw to cand: 0.500, degree of match cand to pw: 0.500, average score: 0.996)
  Genes in pathway or complex:
   *in cand* 0.9996 0.9994 G7990 (fruB) FRUB-MONOMER (FruB)
   *in cand* 0.9998 0.9995 EG10336 (fruA) FRUA-MONOMER (FruA)
             0.9849 0.9727 EG10788 (ptsH) PTSH-MONOMER (HPr)
             0.9984 0.9976 EG10789 (ptsI) PTSI-MONOMER (PTS enzyme I)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9998 0.9995 EG10337 (fruK) 1-PFK-MONOMER (1-phosphofructokinase monomer)
   *in cand* 0.9998 0.9994 EG11863 (frvB) FRVB-MONOMER (FrvB)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10336 EG10337 G7990 (centered at EG10337)
EG11863 (centered at EG11863)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7990   EG11863   EG10337   EG10336   
248/623232/623271/623224/623
AAUR290340:2:Tyes34880550
AAVE397945:0:Tyes2010
ABAC204669:0:Tyes--0-
ACAU438753:0:Tyes0---
ACRY349163:8:Tyes0212
ADEH290397:0:Tyes0---
AFER243159:0:Tyes--0-
AHYD196024:0:Tyes2010
ALAI441768:0:Tyes0---
AMET293826:0:Tyes3333202
ANAE240017:0:Tyes-0--
APLE416269:0:Tyes2010
APLE434271:0:Tno2010
ASAL382245:5:Tyes0212
ASP1667:3:Tyes380462062
ASP232721:2:Tyes0---
ASP62977:0:Tyes0212
ASP76114:2:Tyes0---
BAFZ390236:2:Fyes-02420
BAMB398577:1:Tno--0-
BAMY326423:0:Tyes01994988989
BANT260799:0:Tno392010
BANT261594:2:Tno404010
BANT568206:2:Tyes3444101
BANT592021:2:Tno413010
BAPH198804:0:Tyes0---
BBUR224326:21:Fno-02140
BCER226900:1:Tyes324010
BCER288681:0:Tno328010
BCER315749:1:Tyes1487011391138
BCER405917:1:Tyes358010
BCER572264:1:Tno344154510
BCLA66692:0:Tyes1688101
BGAR290434:2:Fyes-02410
BHAL272558:0:Tyes3064101
BHEN283166:0:Tyes0---
BHER314723:0:Fyes-2332340
BLIC279010:0:Tyes04925253
BPUM315750:0:Tyes014189951418
BQUI283165:0:Tyes0---
BSP107806:2:Tyes0---
BSP376:0:Tyes--0-
BSUB:0:Tyes085811191120
BTHA271848:0:Tno0212
BTHU281309:1:Tno327010
BTHU412694:1:Tno313138810
BTRI382640:1:Tyes0---
BTUR314724:0:Fyes-02320
BVIE269482:5:Tyes--0-
BWEI315730:4:Tyes391010
CACE272562:1:Tyes0797779
CBEI290402:0:Tyes0158115801581
CBLO291272:0:Tno0---
CBOT36826:1:Tno6352290229
CBOT441770:0:Tyes5542310231
CBOT441771:0:Tno5302330233
CBOT441772:1:Tno6782980298
CBOT498213:1:Tno6272430243
CBOT508765:1:Tyes-010
CBOT515621:2:Tyes6682510251
CBOT536232:0:Tno7502810281
CDIF272563:1:Tyes66010
CDIP257309:0:Tyes--0-
CEFF196164:0:Fyes-10-
CHUT269798:0:Tyes--0-
CMIC31964:2:Tyes185010
CMIC443906:2:Tyes258101
CNOV386415:0:Tyes--0-
CPER195102:1:Tyes1091010
CPER195103:0:Tno1340010
CPER289380:3:Tyes1077010
CPHY357809:0:Tyes--0-
CSAL290398:0:Tyes2010
CVIO243365:0:Tyes0212
DETH243164:0:Tyes--0-
DGEO319795:1:Tyes0212
DNOD246195:0:Tyes2727027
DRAD243230:1:Tyes-010
DSHI398580:5:Tyes--0-
DSP216389:0:Tyes--0-
DSP255470:0:Tno--0-
ECAR218491:0:Tyes2010
ECOL199310:0:Tno2010
ECOL316407:0:Tno2119410
ECOL331111:6:Tno2188510
ECOL362663:0:Tno2010
ECOL364106:1:Tno2010
ECOL405955:2:Tyes2010
ECOL409438:6:Tyes2179810
ECOL413997:0:Tno2171710
ECOL439855:4:Tno2189510
ECOL469008:0:Tno0261712
ECOL481805:0:Tno0264112
ECOL585034:0:Tno2181510
ECOL585035:0:Tno2010
ECOL585055:0:Tno2192510
ECOL585056:2:Tno2010
ECOL585057:0:Tno280810
ECOL585397:0:Tno2010
ECOL83334:0:Tno2182310
ECOLI:0:Tno2175810
ECOO157:0:Tno2184010
EFAE226185:3:Tyes0271248249
EFER585054:1:Tyes2161210
ESP42895:1:Tyes2010
FMAG334413:1:Tyes-010
FNOD381764:0:Tyes--0-
FNUC190304:0:Tyes017761775-
FSP1855:0:Tyes0-3-
GBET391165:0:Tyes2010
GKAU235909:1:Tyes108010
GMET269799:1:Tyes0---
GSUL243231:0:Tyes0---
GTHE420246:1:Tyes115010
GURA351605:0:Tyes0---
HAUR316274:2:Tyes0212
HHAL349124:0:Tyes0---
HINF281310:0:Tyes2010
HINF374930:0:Tyes0212
HINF71421:0:Tno2010
HMAR272569:7:Tyes10-4
HMAR272569:8:Tyes--0-
HMOD498761:0:Tyes0---
HMUK485914:1:Tyes--0-
HSOM205914:1:Tyes0---
HSOM228400:0:Tno0---
KPNE272620:2:Tyes2010
KRAD266940:2:Fyes--0-
LACI272621:0:Tyes0107610771076
LCAS321967:1:Tyes1498011276
LDEL321956:0:Tyes011351136-
LDEL390333:0:Tyes010771078-
LGAS324831:0:Tyes1163145401
LHEL405566:0:Tyes0886887-
LINN272626:1:Tno0145614571456
LJOH257314:0:Tyes52616030-
LLAC272622:5:Tyes0944943944
LLAC272623:0:Tyes0936935936
LMES203120:1:Tyes0---
LMON169963:0:Tno019441945205
LMON265669:0:Tyes018461847218
LPLA220668:0:Tyes0275416012754
LREU557436:0:Tyes0---
LSAK314315:0:Tyes418101
LSPH444177:1:Tyes2505-0-
LWEL386043:0:Tyes38616871990
LXYL281090:0:Tyes0-446-
MCAP340047:0:Tyes-10-
MEXT419610:0:Tyes0---
MFLO265311:0:Tyes40610-
MGEN243273:0:Tyes-0-0
MGIL350054:3:Tyes472101
MHYO262719:0:Tyes-0-0
MHYO262722:0:Tno-0-0
MHYO295358:0:Tno-0-0
MMOB267748:0:Tyes0212--
MMYC272632:0:Tyes912012
MPEN272633:0:Tyes-8-0
MPNE272634:0:Tyes-0--
MPUL272635:0:Tyes-0--
MSME246196:0:Tyes-010
MSP164756:1:Tno-01-
MSP164757:0:Tno-01-
MSP189918:2:Tyes-01-
MSP266779:3:Tyes0---
MSP409:2:Tyes0---
MSUC221988:0:Tyes2010
MSYN262723:0:Tyes0---
MTHE264732:0:Tyes3101
MTHE349307:0:Tyes--0-
MVAN350058:0:Tyes5459010
MXAN246197:0:Tyes--0-
NFAR247156:2:Tyes-010
NSP35761:1:Tyes0-1920
OIHE221109:0:Tyes1792010
PACN267747:0:Tyes784012089
PAER208963:0:Tyes0212
PAER208964:0:Tno2010
PCAR338963:0:Tyes0---
PENT384676:0:Tyes0212
PFLU205922:0:Tyes0212
PFLU216595:1:Tyes0212
PFLU220664:0:Tyes0212
PING357804:0:Tyes0212
PLUM243265:0:Fyes018711
PMEN399739:0:Tyes0212
PMOB403833:0:Tyes--0-
PMUL272843:1:Tyes2-10
PNAP365044:8:Tyes--0-
PPEN278197:0:Tyes44897001
PPRO298386:2:Tyes0212
PPUT160488:0:Tno0212
PPUT351746:0:Tyes0212
PPUT76869:0:Tno0212
PSP296591:2:Tyes--0-
PSTU379731:0:Tyes0212
PSYR205918:0:Tyes0212
PSYR223283:2:Tyes0212
RALB246199:0:Tyes--0-
RCAS383372:0:Tyes--0-
RPAL258594:0:Tyes--0-
RPAL316057:0:Tyes--0-
RPAL316058:0:Tyes--0-
RRUB269796:1:Tyes2010
RSAL288705:0:Tyes-202
RSOL267608:1:Tyes0212
RSP101510:3:Fyes-010
RSP357808:0:Tyes--0-
RSPH272943:4:Tyes0212
RSPH349101:2:Tno0212
RSPH349102:5:Tyes0212
RXYL266117:0:Tyes0-547-
SAGA205921:0:Tno0421422421
SAGA208435:0:Tno0509510509
SAGA211110:0:Tyes0567568567
SARE391037:0:Tyes0-3-
SAUR158878:1:Tno1506199701997
SAUR158879:1:Tno1412190801908
SAUR196620:0:Tno1472195901959
SAUR273036:0:Tno1396186901869
SAUR282458:0:Tno1491195901959
SAUR282459:0:Tno1442192201922
SAUR359786:1:Tno1494197301973
SAUR359787:1:Tno1461194801948
SAUR367830:3:Tno1365182201822
SAUR418127:0:Tyes1496198801988
SAUR426430:0:Tno1437192701927
SAUR93061:0:Fno1655221002210
SAUR93062:1:Tno1356186001860
SAVE227882:1:Fyes-02550
SBOY300268:1:Tyes0167012
SCO:2:Fyes-011100
SDYS300267:1:Tyes2010
SENT209261:0:Tno0212
SENT220341:0:Tno2010
SENT295319:0:Tno0212
SENT321314:2:Tno2010
SENT454169:2:Tno2010
SEPI176279:1:Tyes300185901859
SEPI176280:0:Tno313181401814
SERY405948:0:Tyes-202
SFLE198214:0:Tyes2169210
SFLE373384:0:Tno2129410
SGLO343509:3:Tyes0-972-
SGOR29390:0:Tyes435101
SHAE279808:0:Tyes0200920102009
SHIGELLA:0:Tno2124810
SMUT210007:0:Tyes9977117100
SPNE1313:0:Tyes0-410411
SPNE170187:0:Tyes183-10
SPNE171101:0:Tno0426425426
SPNE487213:0:Tno0-262261
SPNE487214:0:Tno0-452453
SPNE488221:0:Tno0-424425
SPRO399741:1:Tyes2010
SPYO160490:0:Tno422101
SPYO186103:0:Tno417101
SPYO193567:0:Tno0463464463
SPYO198466:0:Tno468101
SPYO286636:0:Tno418101
SPYO293653:0:Tno459101
SPYO319701:0:Tyes470101
SPYO370551:0:Tno454101
SPYO370552:0:Tno474101
SPYO370553:0:Tno45609450
SPYO370554:0:Tyes474101
SRUB309807:1:Tyes0---
SSAP342451:2:Tyes013341335-
SSON300269:1:Tyes2175110
SSUI391295:0:Tyes378-01
SSUI391296:0:Tyes391101
STHE264199:0:Tyes1-0-
STHE292459:0:Tyes014661
STHE299768:0:Tno807-0-
STHE322159:2:Tyes700-0-
STYP99287:1:Tyes2010
TFUS269800:0:Tyes--0-
TMAR243274:0:Tyes--0-
TPEN368408:1:Tyes0---
TPET390874:0:Tno--0-
TPSE340099:0:Tyes1747202
TROS309801:0:Tyes--0-
TSP1755:0:Tyes0299297542
TSP28240:0:Tyes0131
TTEN273068:0:Tyes0213021322130
VCHO:1:Fyes2010
VCHO345073:0:Tno2010
VFIS312309:1:Tyes2010
VPAR223926:0:Tyes2010
VVUL196600:1:Tyes2010
VVUL216895:0:Tno2010
XAXO190486:0:Tyes0212
XCAM190485:0:Tyes0212
XCAM314565:0:Tno2010
XCAM316273:0:Tno0212
XCAM487884:0:Tno2010
XORY291331:0:Tno0212
XORY342109:0:Tyes0212
XORY360094:0:Tno4020
YENT393305:1:Tyes0212
YPES187410:5:Tno2010
YPES214092:3:Tno0212
YPES349746:2:Tno0212
YPES360102:3:Tyes0212
YPES377628:2:Tno2010
YPES386656:2:Tno2010
YPSE273123:2:Tno0212
YPSE349747:2:Tno2010



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