CANDIDATE ID: 378

CANDIDATE ID: 378

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9962133e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    2.5000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG10304 (fhuC) (b0151)
   Products of gene:
     - FHUC-MONOMER (FhuC)
     - ABC-11-CPLX (iron (III) hydroxamate ABC transporter)
       Reactions:
        ATP + iron (III) hydroxamate complex[periplasmic space] + H2O  ->  ADP + phosphate + iron (III) hydroxamate complex[cytosol]
     - CPLX0-1981 (ferrichrome uptake system)
       Reactions:
        iron (III) hydroxamate complex[extracellular space]  ->  iron (III) hydroxamate complex[cytosol]

- EG10303 (fhuB) (b0153)
   Products of gene:
     - FHUB-MONOMER (FhuB)
     - ABC-11-CPLX (iron (III) hydroxamate ABC transporter)
       Reactions:
        ATP + iron (III) hydroxamate complex[periplasmic space] + H2O  ->  ADP + phosphate + iron (III) hydroxamate complex[cytosol]
     - CPLX0-1981 (ferrichrome uptake system)
       Reactions:
        iron (III) hydroxamate complex[extracellular space]  ->  iron (III) hydroxamate complex[cytosol]

- EG10295 (fepC) (b0588)
   Products of gene:
     - FEPC-MONOMER (FepC)
     - ABC-10-CPLX (ferric enterobactin ABC transporter)
       Reactions:
        ATP + ferric enterobactin[periplasmic space] + H2O  ->  ADP + phosphate + ferric enterobactin[cytosol]
     - CPLX0-1944 (Ferric Enterobactin Transport System)
       Reactions:
        ferric enterobactin[extracellular space]  ->  ferric enterobactin[cytosol]

- EG10290 (fecE) (b4287)
   Products of gene:
     - FECE-MONOMER (FecE)
     - ABC-9-CPLX (iron dicitrate ABC transporter)
       Reactions:
        ATP + ferric dicitrate[periplasmic space] + H2O  ->  ADP + phosphate + ferric dicitrate[cytosol]
     - CPLX0-2001 (ferric dicitrate uptake system)
       Reactions:
        ferric dicitrate[extracellular space]  ->  ferric dicitrate[cytosol]



Back to top


ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 221
Effective number of orgs (counting one per cluster within 468 clusters): 134

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F3
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
VVUL216895 ncbi Vibrio vulnificus CMCP63
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TLET416591 ncbi Thermotoga lettingae TMO3
TFUS269800 ncbi Thermobifida fusca YX3
TDEN243275 ncbi Treponema denticola ATCC 354053
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
STRO369723 ncbi Salinispora tropica CNB-4403
STHE292459 ncbi Symbiobacterium thermophilum IAM 148633
SSP644076 Silicibacter sp. TrichCH4B3
SSP1148 ncbi Synechocystis sp. PCC 68034
SSON300269 ncbi Shigella sonnei Ss0464
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153054
SPYO370554 ncbi Streptococcus pyogenes MGAS107503
SPYO370553 ncbi Streptococcus pyogenes MGAS20963
SPYO370552 ncbi Streptococcus pyogenes MGAS102703
SPYO370551 ncbi Streptococcus pyogenes MGAS94293
SPYO319701 ncbi Streptococcus pyogenes MGAS61803
SPYO293653 ncbi Streptococcus pyogenes MGAS50053
SPYO286636 ncbi Streptococcus pyogenes MGAS103943
SPYO198466 ncbi Streptococcus pyogenes MGAS3153
SPYO193567 ncbi Streptococcus pyogenes SSI-13
SPYO186103 ncbi Streptococcus pyogenes MGAS82323
SPYO160490 ncbi Streptococcus pyogenes M1 GAS3
SPRO399741 ncbi Serratia proteamaculans 5684
SPNE488221 ncbi Streptococcus pneumoniae 705853
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-63
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-143
SPNE171101 ncbi Streptococcus pneumoniae R63
SPNE170187 ncbi Streptococcus pneumoniae G543
SPNE1313 Streptococcus pneumoniae3
SMEL266834 ncbi Sinorhizobium meliloti 10213
SMED366394 ncbi Sinorhizobium medicae WSM4194
SLAC55218 Ruegeria lacuscaerulensis3
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14354
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23383
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122283
SEPI176279 ncbi Staphylococcus epidermidis RP62A3
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SCO ncbi Streptomyces coelicolor A3(2)4
SBOY300268 ncbi Shigella boydii Sb2274
SAVE227882 ncbi Streptomyces avermitilis MA-46804
SAUR93062 ncbi Staphylococcus aureus aureus COL4
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83254
SAUR426430 ncbi Staphylococcus aureus aureus Newman4
SAUR418127 ncbi Staphylococcus aureus aureus Mu34
SAUR367830 Staphylococcus aureus aureus USA3004
SAUR359787 ncbi Staphylococcus aureus aureus JH14
SAUR359786 ncbi Staphylococcus aureus aureus JH94
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4764
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2524
SAUR273036 ncbi Staphylococcus aureus RF1224
SAUR196620 ncbi Staphylococcus aureus aureus MW24
SAUR158879 ncbi Staphylococcus aureus aureus N3154
SAUR158878 ncbi Staphylococcus aureus aureus Mu504
SARE391037 ncbi Salinispora arenicola CNS-2053
SAGA211110 ncbi Streptococcus agalactiae NEM3163
SAGA208435 ncbi Streptococcus agalactiae 2603V/R3
SAGA205921 ncbi Streptococcus agalactiae A9093
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99414
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170253
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170294
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.14
RSP101510 ncbi Rhodococcus jostii RHA13
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332094
RETL347834 ncbi Rhizobium etli CFN 423
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30003
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a3
PSP296591 ncbi Polaromonas sp. JS6663
PPUT76869 ncbi Pseudomonas putida GB-13
PPRO298386 ncbi Photobacterium profundum SS94
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PMEN399739 ncbi Pseudomonas mendocina ymp3
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PFLU220664 ncbi Pseudomonas fluorescens Pf-53
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PCRY335284 ncbi Psychrobacter cryohalolentis K54
PAER208964 ncbi Pseudomonas aeruginosa PAO13
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA143
OIHE221109 ncbi Oceanobacillus iheyensis HTE8314
OANT439375 ncbi Ochrobactrum anthropi ATCC 491884
NSP103690 ncbi Nostoc sp. PCC 71204
NFAR247156 ncbi Nocardia farcinica IFM 101524
MSP400668 ncbi Marinomonas sp. MWYL14
MSP266779 ncbi Chelativorans sp. BNC13
MSME246196 ncbi Mycobacterium smegmatis MC2 1553
MAQU351348 ncbi Marinobacter aquaeolei VT84
LXYL281090 ncbi Leifsonia xyli xyli CTCB074
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53343
LSPH444177 ncbi Lysinibacillus sphaericus C3-414
LSAK314315 ncbi Lactobacillus sakei sakei 23K3
LPLA220668 ncbi Lactobacillus plantarum WCFS13
LMON265669 ncbi Listeria monocytogenes 4b F23653
LMON169963 ncbi Listeria monocytogenes EGD-e3
LINN272626 ncbi Listeria innocua Clip112624
KRAD266940 ncbi Kineococcus radiotolerans SRS302164
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
HSP64091 ncbi Halobacterium sp. NRC-14
HSAL478009 ncbi Halobacterium salinarum R14
HMUK485914 ncbi Halomicrobium mukohataei DSM 122863
HMAR272569 ncbi Haloarcula marismortui ATCC 430493
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237794
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-24
GKAU235909 ncbi Geobacillus kaustophilus HTA4264
FSP1855 Frankia sp. EAN1pec3
FALN326424 ncbi Frankia alni ACN14a3
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
EFAE226185 ncbi Enterococcus faecalis V5833
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DRAD243230 ncbi Deinococcus radiodurans R14
DHAF138119 ncbi Desulfitobacterium hafniense Y514
DGEO319795 ncbi Deinococcus geothermalis DSM 113004
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CTET212717 ncbi Clostridium tetani E883
CSP501479 Citreicella sp. SE453
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CPER289380 ncbi Clostridium perfringens SM1014
CPER195103 ncbi Clostridium perfringens ATCC 131244
CPER195102 ncbi Clostridium perfringens 134
CNOV386415 ncbi Clostridium novyi NT3
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3824
CMIC31964 ncbi Clavibacter michiganensis sepedonicus4
CJEI306537 ncbi Corynebacterium jeikeium K4114
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130323
CEFF196164 ncbi Corynebacterium efficiens YS-3143
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131293
CDIF272563 ncbi Clostridium difficile 6304
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto3
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6574
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B4
CBOT498213 ncbi Clostridium botulinum B1 str. Okra4
CBOT441772 ncbi Clostridium botulinum F str. Langeland4
CBOT441771 ncbi Clostridium botulinum A str. Hall4
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193974
CBOT36826 Clostridium botulinum A4
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80523
CACE272562 ncbi Clostridium acetobutylicum ATCC 8244
BXEN266265 ncbi Burkholderia xenovorans LB4004
BWEI315730 ncbi Bacillus weihenstephanensis KBAB44
BVIE269482 ncbi Burkholderia vietnamiensis G44
BTHU412694 ncbi Bacillus thuringiensis Al Hakam4
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-274
BTHA271848 ncbi Burkholderia thailandensis E2644
BSUB ncbi Bacillus subtilis subtilis 1684
BSP36773 Burkholderia sp.4
BPUM315750 ncbi Bacillus pumilus SAFR-0324
BPSE320373 ncbi Burkholderia pseudomallei 6684
BPSE320372 ncbi Burkholderia pseudomallei 1710b4
BPSE272560 ncbi Burkholderia pseudomallei K962434
BMAL320389 ncbi Burkholderia mallei NCTC 102474
BMAL320388 ncbi Burkholderia mallei SAVP14
BMAL243160 ncbi Burkholderia mallei ATCC 233444
BLIC279010 ncbi Bacillus licheniformis ATCC 145804
BHAL272558 ncbi Bacillus halodurans C-1254
BCLA66692 ncbi Bacillus clausii KSM-K164
BCER572264 ncbi Bacillus cereus 03BB1024
BCER405917 Bacillus cereus W4
BCER315749 ncbi Bacillus cytotoxicus NVH 391-984
BCER288681 ncbi Bacillus cereus E33L4
BCER226900 ncbi Bacillus cereus ATCC 145794
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BANT592021 ncbi Bacillus anthracis A02484
BANT568206 ncbi Bacillus anthracis CDC 6844
BANT261594 ncbi Bacillus anthracis Ames Ancestor4
BANT260799 ncbi Bacillus anthracis Sterne4
BAMY326423 ncbi Bacillus amyloliquefaciens FZB424
BAMB398577 ncbi Burkholderia ambifaria MC40-64
BAMB339670 ncbi Burkholderia ambifaria AMMD4
AVAR240292 ncbi Anabaena variabilis ATCC 294134
ASP1667 Arthrobacter sp.3
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
AORE350688 ncbi Alkaliphilus oremlandii OhILAs4
ANAE240017 Actinomyces oris MG13
AMET293826 ncbi Alkaliphilus metalliredigens QYMF3
AMAR329726 ncbi Acaryochloris marina MBIC110174
AHYD196024 Aeromonas hydrophila dhakensis3
ACAU438753 ncbi Azorhizobium caulinodans ORS 5714
AAUR290340 ncbi Arthrobacter aurescens TC14


Names of the homologs of the genes in the group in each of these orgs
  EG10304   EG10303   EG10295   EG10290   
YPSE349747 YPSIP31758_3333YPSIP31758_3331YPSIP31758_2444YPSIP31758_2444
YPSE273123 YPTB0739YPTB0741YPTB1545YPTB1545
YPES386656 YPDSF_2967YPDSF_1443YPDSF_1443
YPES377628 YPN_0698YPN_0700YPN_2447YPN_2447
YPES360102 YPA_2892YPA_2890YPA_0827YPA_0827
YPES349746 YPANGOLA_A0998YPANGOLA_A0996YPANGOLA_A3186YPANGOLA_A3186
YPES214092 YPO3392YPO3390YPO1533YPO1533
YPES187410 Y0796Y0798Y2637Y2637
YENT393305 YE0730YE0732YE3621YE3621
VVUL216895 VV2_1011VV2_1013VV2_1011
VVUL196600 VVA1504VVA1506VVA1504VVA1504
VPAR223926 VPA1436VPA1438VPA1652VPA1652
VFIS312309 VFA0158VFA0160VFA0158VFA0158
VCHO345073 VC0395_A2581VC0395_A2583VC0395_A0308VC0395_A0308
VCHO VC0201VC0203VC0779VC0779
TLET416591 TLET_1250TLET_1249TLET_1249
TFUS269800 TFU_0336TFU_0336TFU_0336
TDEN243275 TDE_0625TDE_1179TDE_0625
STYP99287 STM0192STM0194STM0590STM0590
STRO369723 STROP_2555STROP_2555STROP_1628
STHE292459 STH1283STH1283STH1283
SSP644076 SCH4B_3664SCH4B_3664SCH4B_3664
SSP1148 SLR1318SLR1316SLR1318SLR1318
SSON300269 SSO_0163SSO_0165SSO_0539SSO_4459
SSAP342451 SSP2073SSP2072SSP2073SSP2073
SPYO370554 MGAS10750_SPY0318MGAS10750_SPY0318MGAS10750_SPY0318
SPYO370553 MGAS2096_SPY0341MGAS2096_SPY0341MGAS2096_SPY0341
SPYO370552 MGAS10270_SPY0319MGAS10270_SPY0319MGAS10270_SPY0319
SPYO370551 MGAS9429_SPY0323MGAS9429_SPY0323MGAS9429_SPY0323
SPYO319701 M28_SPY0313M28_SPY0313M28_SPY0313
SPYO293653 M5005_SPY0324M5005_SPY0324M5005_SPY0324
SPYO286636 M6_SPY0350M6_SPY0350M6_SPY0350
SPYO198466 SPYM3_0283SPYM3_0283SPYM3_0283
SPYO193567 SPS1576SPS1576SPS1576
SPYO186103 SPYM18_0439SPYM18_0439SPYM18_0439
SPYO160490 SPY0386SPY0386SPY0386
SPRO399741 SPRO_3978SPRO_3976SPRO_3426SPRO_3426
SPNE488221 SP70585_1115SP70585_1115SP70585_1115
SPNE487214 SPH_1137SPH_1137SPH_1137
SPNE487213 SPT_1085SPT_1085SPT_1085
SPNE171101 SPR0938SPR0938SPR0938
SPNE170187 SPN07054SPN07054SPN07054
SPNE1313 SPJ_0972SPJ_0972SPJ_0972
SMEL266834 SMA1741SMA1741SMA1741
SMED366394 SMED_2494SMED_2493SMED_2494SMED_2494
SLAC55218 SL1157_0504SL1157_0504SL1157_0504
SHIGELLA FHUCFHUBFEPCFEPC
SHAE279808 SH2247SH2246SH2247SH2247
SGLO343509 SGP1_0035SGP1_0036SGP1_0035SGP1_0035
SFLE373384 SFV_0136SFV_0138SFV_0536SFV_0536
SFLE198214 AAN41806.1AAN41808.1AAN42151.1AAN42151.1
SERY405948 SACE_0413SACE_0413SACE_0413
SEPI176280 SE_0421SE_0421SE_0421
SEPI176279 SERP0306SERP0306SERP0306
SENT454169 SEHA_C0225SEHA_C0227SEHA_C0702SEHA_C0702
SENT321314 SCH_0192SCH_0194SCH_0621SCH_0621
SENT295319 SPA0198SPA0200SPA2144SPA2144
SENT220341 STY0219STY0221STY0634STY0634
SENT209261 T0200T0202T2278T2278
SDYS300267 SDY_0167SDY_0169SDY_0519SDY_4293
SCO SCO1785SCO7398SCO1785SCO0495
SBOY300268 SBO_0140SBO_0142SBO_0449SBO_0449
SAVE227882 SAV6493SAV601SAV6493SAV6493
SAUR93062 SACOL0704SACOL2166SACOL0704SACOL0704
SAUR93061 SAOUHSC_00652SAOUHSC_02428SAOUHSC_00652SAOUHSC_00652
SAUR426430 NWMN_0616NWMN_2077NWMN_0616NWMN_0616
SAUR418127 SAHV_0644SAHV_2160SAHV_0644SAHV_0644
SAUR367830 SAUSA300_0633SAUSA300_2135SAUSA300_0633SAUSA300_0633
SAUR359787 SAURJH1_0685SAURJH1_2245SAURJH1_0685SAURJH1_0685
SAUR359786 SAURJH9_0670SAURJH9_2207SAURJH9_0670SAURJH9_0670
SAUR282459 SAS0612SAS2077SAS0612SAS0612
SAUR282458 SAR0657SAR0658SAR0657SAR0657
SAUR273036 SAB0596SAB2057CSAB0596SAB0596
SAUR196620 MW0609MW2102MW0609MW0609
SAUR158879 SA0602SA1978SA0602SA0602
SAUR158878 SAV0647SAV2176SAV0647SAV0647
SARE391037 SARE_2744SARE_2744SARE_2744
SAGA211110 GBS1462GBS1462GBS1462
SAGA208435 SAG_1392SAG_1392SAG_1392
SAGA205921 SAK_1425SAK_1425SAK_1425
RXYL266117 RXYL_0416RXYL_0415RXYL_0416RXYL_0416
RSPH349102 RSPH17025_3334RSPH17025_3334RSPH17025_3334
RSPH349101 RSPH17029_0086RSPH17029_0087RSPH17029_3058RSPH17029_3058
RSPH272943 RSP_1437RSP_1438RSP_3413RSP_3413
RSP101510 RHA1_RO07251RHA1_RO07251RHA1_RO07251
RSAL288705 RSAL33209_2862RSAL33209_2062RSAL33209_2862RSAL33209_1681
RETL347834 RHE_PE00282RHE_PF00465RHE_PE00282
PSYR223283 PSPTO_0760PSPTO_0760PSPTO_0760
PSYR205918 PSYR_2593PSYR_2593PSYR_0664
PSP296591 BPRO_4778BPRO_4777BPRO_4777
PPUT76869 PPUTGB1_1803PPUTGB1_1803PPUTGB1_1803
PPRO298386 PBPRA1565PBPRA1563PBPRB1814PBPRB1814
PMUL272843 PM0128PM0129PM0128PM0128
PMEN399739 PMEN_2860PMEN_3768PMEN_2860
PLUM243265 PLU4450PLU4448PLU4626PLU4450
PFLU220664 PFL_3622PFL_3622PFL_3622
PFLU216595 PFLU4088PFLU4090PFLU4088PFLU4088
PCRY335284 PCRYO_1285PCRYO_1284PCRYO_1285PCRYO_1285
PAER208964 PA4158PA4158PA4158
PAER208963 PA14_55040PA14_10180PA14_10180
OIHE221109 OB0262OB0452OB0262OB0450
OANT439375 OANT_3476OANT_2778OANT_4085OANT_4085
NSP103690 ALL0389ALL0387ALL2584ALL2584
NFAR247156 NFA25190NFA18240NFA25190NFA25190
MSP400668 MMWYL1_1010MMWYL1_1008MMWYL1_3639MMWYL1_0690
MSP266779 MESO_0135MESO_0136MESO_0136
MSME246196 MSMEG_0015MSMEG_0015MSMEG_0015
MAQU351348 MAQU_2188MAQU_2190MAQU_3299MAQU_3299
LXYL281090 LXX17230LXX17240LXX17230LXX17230
LWEL386043 LWE1986LWE1986LWE1986
LSPH444177 BSPH_2323BSPH_1674BSPH_1675BSPH_1675
LSAK314315 LSA0400LSA0402LSA0400
LPLA220668 LP_3104LP_3104LP_3104
LMON265669 LMOF2365_1990LMOF2365_1990LMOF2365_1990
LMON169963 LMO1960LMO1960LMO1960
LINN272626 LIN2074LIN2071LIN2074LIN2074
KRAD266940 KRAD_1239KRAD_1240KRAD_1239KRAD_1239
KPNE272620 GKPORF_B4454GKPORF_B4457GKPORF_B5025GKPORF_B5025
HSP64091 VNG2558GVNG2560GVNG2558GVNG2558G
HSAL478009 OE4587ROE4591ROE4587ROE4587R
HMUK485914 HMUK_2443HMUK_2442HMUK_2442
HMAR272569 PNG7275PNG7276PNG7276
HCHE349521 HCH_01396HCH_01394HCH_03795HCH_03795
HAUR316274 HAUR_1737HAUR_1736HAUR_1737HAUR_1737
GTHE420246 GTNG_0175GTNG_1319GTNG_1320GTNG_0175
GKAU235909 GK0194GK1460GK1461GK1461
FSP1855 FRANEAN1_3047FRANEAN1_3047FRANEAN1_3047
FALN326424 FRAAL5294FRAAL5294FRAAL5294
ESP42895 ENT638_0691ENT638_0693ENT638_1120ENT638_1120
EFER585054 EFER_0174EFER_0176EFER_2506EFER_2506
EFAE226185 EF_3083EF_0193EF_0191
ECOO157 FHUCFHUBFEPCFEPC
ECOL83334 ECS0155ECS0157ECS0627ECS0627
ECOL585397 ECED1_0157ECED1_0159ECED1_0585ECED1_5151
ECOL585057 ECIAI39_0155ECIAI39_0157ECIAI39_0565ECIAI39_4765
ECOL585056 ECUMN_0148ECUMN_0150ECUMN_0682ECUMN_4855
ECOL585055 EC55989_0145EC55989_0147EC55989_0580EC55989_4959
ECOL585035 ECS88_0162ECS88_0164ECS88_0627ECS88_4860
ECOL585034 ECIAI1_0149ECIAI1_0151ECIAI1_0572ECIAI1_0572
ECOL481805 ECOLC_3508ECOLC_3506ECOLC_3056ECOLC_0739
ECOL469008 ECBD_3467ECBD_3465ECBD_3067ECBD_3751
ECOL439855 ECSMS35_0163ECSMS35_0165ECSMS35_0607ECSMS35_0607
ECOL413997 ECB_00150ECB_00152ECB_00555ECB_04153
ECOL409438 ECSE_0152ECSE_0154ECSE_0655ECSE_0655
ECOL405955 APECO1_1834APECO1_1832APECO1_1461APECO1_1461
ECOL364106 UTI89_C0167UTI89_C0169UTI89_C0590UTI89_C0590
ECOL362663 ECP_0161ECP_0163ECP_0620ECP_0620
ECOL331111 ECE24377A_0156ECE24377A_0158ECE24377A_0607ECE24377A_4864
ECOL316407 ECK0150:JW0147:B0151ECK0152:JW0149:B0153ECK0581:JW0580:B0588ECK4277:JW4247:B4287
ECOL199310 C0186C0188C0675C0675
ECAR218491 ECA3312ECA3310ECA2806ECA1073
DRAD243230 DR_B0121DR_B0122DR_B0121DR_B0121
DHAF138119 DSY1005DSY3873DSY1005DSY3570
DGEO319795 DGEO_2759DGEO_2758DGEO_2759DGEO_2759
CVIO243365 CV_2234CV_1794CV_2234CV_2234
CTET212717 CTC_01196CTC_01197CTC_01197
CSP501479 CSE45_0698CSE45_0698CSE45_0698
CSAL290398 CSAL_1051CSAL_1049CSAL_2702CSAL_2702
CPER289380 CPR_0797CPR_0796CPR_0797CPR_0797
CPER195103 CPF_0810CPF_0809CPF_0810CPF_0810
CPER195102 CPE0813CPE0812CPE0813CPE0813
CNOV386415 NT01CX_1447NT01CX_1448NT01CX_1448
CMIC443906 CMM_2928CMM_0167CMM_2928CMM_2928
CMIC31964 CMS3063CMS0337CMS3063CMS3063
CJEI306537 JK1293JK1294JK1818JK1806
CGLU196627 CG0768CG0589CG0589
CEFF196164 CE0684CE0684CE0684
CDIP257309 DIP0585DIP1059DIP1059
CDIF272563 CD2875CD2876CD2875CD2875
CBOT536232 CLM_0381CLM_0381CLM_0381
CBOT515621 CLJ_B0366CLJ_B0364CLJ_B0366CLJ_B0366
CBOT508765 CLL_A2113CLL_A2114CLL_A2113CLL_A2113
CBOT498213 CLD_0440CLD_0442CLD_0440CLD_0440
CBOT441772 CLI_0383CLI_0381CLI_0383CLI_0383
CBOT441771 CLC_0371CLC_0369CLC_0371CLC_0371
CBOT441770 CLB_0356CLB_0354CLB_0356CLB_0356
CBOT36826 CBO0313CBO0311CBO0313CBO0313
CBEI290402 CBEI_3760CBEI_3760CBEI_2141
CACE272562 CAC0791CAC0788CAC0791CAC0791
BXEN266265 BXE_B1929BXE_B0521BXE_B0520BXE_B0520
BWEI315730 BCERKBAB4_5174BCERKBAB4_4357BCERKBAB4_0532BCERKBAB4_5174
BVIE269482 BCEP1808_1580BCEP1808_1581BCEP1808_1580BCEP1808_1580
BTHU412694 BALH_4877BALH_4114BALH_0556BALH_4877
BTHU281309 BT9727_5061BT9727_4265BT9727_0528BT9727_5061
BTHA271848 BTH_I2424BTH_I2423BTH_I2424BTH_I2424
BSUB BSU33290BSU33300BSU32940BSU33290
BSP36773 BCEP18194_A4781BCEP18194_A4782BCEP18194_A4781BCEP18194_A4781
BPUM315750 BPUM_2990BPUM_2991BPUM_2949BPUM_2990
BPSE320373 BURPS668_1920BURPS668_1921BURPS668_1920BURPS668_1920
BPSE320372 BURPS1710B_A2241BURPS1710B_A2242BURPS1710B_A2241BURPS1710B_A2241
BPSE272560 BPSL1784BPSL1783BPSL1784BPSL1784
BMAL320389 BMA10247_0867BMA10247_0868BMA10247_0867BMA10247_0867
BMAL320388 BMASAVP1_A1631BMASAVP1_A1630BMASAVP1_A1631BMASAVP1_A1631
BMAL243160 BMA_1188BMA_1187BMA_1188BMA_1188
BLIC279010 BL00705BL00704BL02183BL00705
BHAL272558 BH1081BH1038BH1039BH1081
BCLA66692 ABC1084ABC3751ABC1084ABC1084
BCER572264 BCA_5531BCA_4636BCA_0652BCA_5531
BCER405917 BCE_5510BCE_0685BCE_0686BCE_5510
BCER315749 BCER98_3902BCER98_3903BCER98_3902BCER98_3902
BCER288681 BCE33L5078BCE33L0527BCE33L0528BCE33L5078
BCER226900 BC_5381BC_0618BC_0619BC_5381
BCEN331272 BCEN2424_1635BCEN2424_1636BCEN2424_1635BCEN2424_1635
BCEN331271 BCEN_1155BCEN_1156BCEN_1155BCEN_1155
BANT592021 BAA_5655BAA_4782BAA_0700BAA_5655
BANT568206 BAMEG_5673BAMEG_4801BAMEG_3969BAMEG_5673
BANT261594 GBAA5629GBAA4767GBAA0618GBAA5629
BANT260799 BAS5230BAS4425BAS0584BAS5230
BAMY326423 RBAM_030410RBAM_030420RBAM_030060RBAM_030410
BAMB398577 BAMMC406_1553BAMMC406_1554BAMMC406_1553BAMMC406_1553
BAMB339670 BAMB_1532BAMB_1533BAMB_1532BAMB_1532
AVAR240292 AVA_2830AVA_2828AVA_2830AVA_2830
ASP1667 ARTH_3932ARTH_3932ARTH_3932
ASAL382245 ASA_4365ASA_4367ASA_1847ASA_1847
AORE350688 CLOS_2428CLOS_0311CLOS_2428CLOS_2810
ANAE240017 ANA_2757ANA_2757ANA_1461
AMET293826 AMET_3771AMET_3771AMET_3771
AMAR329726 AM1_3348AM1_A0162AM1_A0161AM1_A0161
AHYD196024 AHA_4277AHA_4279AHA_1966
ACAU438753 AZC_3237AZC_3249AZC_0183AZC_0183
AAUR290340 AAUR_0389AAUR_2017AAUR_0557AAUR_3763


Organism features enriched in list (features available for 207 out of the 221 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 1.343e-65392
Arrangment:Clusters 1.459e-81717
Arrangment:Pairs 8.534e-1068112
Disease:Botulism 0.005468255
Disease:Bubonic_plague 0.001911066
Disease:Dysentery 0.001911066
Disease:Gastroenteritis 0.00222381013
Disease:Opportunistic_infections 0.005468255
Disease:Pneumonia 0.0049332912
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 9.487e-61111
Disease:Wide_range_of_infections 9.487e-61111
Endospores:Yes 1.036e-124353
GC_Content_Range7:70-100 0.0018862911
Genome_Size_Range5:0-2 6.682e-1913155
Genome_Size_Range5:4-6 8.671e-996184
Genome_Size_Range5:6-10 3.778e-73347
Genome_Size_Range9:1-2 2.988e-1313128
Genome_Size_Range9:4-5 0.00005085196
Genome_Size_Range9:5-6 0.00045634588
Genome_Size_Range9:6-8 0.00001592638
Gram_Stain:Gram_Neg 3.747e-790333
Gram_Stain:Gram_Pos 7.101e-20100150
Habitat:Aquatic 0.00002871691
Habitat:Multiple 1.197e-791178
Habitat:Specialized 0.0011559953
Habitat:Terrestrial 0.00051902031
Motility:No 0.006436365151
Motility:Yes 0.0008098112267
Optimal_temp.:30-35 0.008717267
Optimal_temp.:30-37 4.899e-91818
Oxygen_Req:Aerobic 0.006938454185
Oxygen_Req:Anaerobic 0.000025419102
Oxygen_Req:Facultative 5.446e-16116201
Pathogenic_in:Human 4.569e-12114213
Pathogenic_in:No 2.474e-655226
Salinity:Non-halophilic 0.006241248106
Shape:Coccus 0.00068234282
Shape:Rod 0.0000195146347
Shape:Spiral 3.925e-6134
Temp._range:Hyperthermophilic 0.0004369123
Temp._range:Mesophilic 5.393e-8191473
Temp._range:Thermophilic 0.0084617635



Back to top


ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 385
Effective number of orgs (counting one per cluster within 468 clusters): 321

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VEIS391735 ncbi Verminephrobacter eiseniae EF01-20
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79010
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB41
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP94122 ncbi Shewanella sp. ANA-31
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP292414 ncbi Ruegeria sp. TM10400
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSED425104 ncbi Shewanella sediminis HAW-EB30
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPEA398579 ncbi Shewanella pealeana ATCC 7003451
SONE211586 ncbi Shewanella oneidensis MR-10
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SHAL458817 ncbi Shewanella halifaxensis HAW-EB41
SGOR29390 Streptococcus gordonii Challis0
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2171
SDEG203122 ncbi Saccharophagus degradans 2-400
SBAL402882 ncbi Shewanella baltica OS1850
SBAL399599 ncbi Shewanella baltica OS1950
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SACI56780 ncbi Syntrophus aciditrophicus SB1
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP357808 ncbi Roseiflexus sp. RS-10
RSOL267608 ncbi Ralstonia solanacearum GMI10000
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111700
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-30
RPAL316058 ncbi Rhodopseudomonas palustris HaA20
RPAL316057 ncbi Rhodopseudomonas palustris BisB50
RPAL316056 ncbi Rhodopseudomonas palustris BisB180
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RPAL258594 ncbi Rhodopseudomonas palustris CGA0090
RMET266264 ncbi Ralstonia metallidurans CH340
RMAS416276 ncbi Rickettsia massiliae MTU50
RFER338969 ncbi Rhodoferax ferrireducens T1180
RFEL315456 ncbi Rickettsia felis URRWXCal20
REUT381666 ncbi Ralstonia eutropha H160
REUT264198 ncbi Ralstonia eutropha JMP1340
RDEN375451 ncbi Roseobacter denitrificans OCh 1140
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSTU379731 ncbi Pseudomonas stutzeri A15010
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PPUT351746 ncbi Pseudomonas putida F10
PPUT160488 ncbi Pseudomonas putida KT24400
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PNAP365044 ncbi Polaromonas naphthalenivorans CJ20
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PING357804 ncbi Psychromonas ingrahamii 370
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1251
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PFLU205922 ncbi Pseudomonas fluorescens Pf0-10
PENT384676 ncbi Pseudomonas entomophila L480
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OCAR504832 ncbi Oligotropha carboxidovorans OM51
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP35761 Nocardioides sp.0
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16220
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390731
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP409 Methylobacterium sp.0
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM10
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS101
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLOT266835 ncbi Mesorhizobium loti MAFF3030991
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCHO395495 ncbi Leptothrix cholodnii SP-60
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
JSP375286 ncbi Janthinobacterium sp. Marseille0
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HINF71421 ncbi Haemophilus influenzae Rd KW200
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GURA351605 ncbi Geobacter uraniireducens Rf40
GSUL243231 ncbi Geobacter sulfurreducens PCA0
GOXY290633 ncbi Gluconobacter oxydans 621H0
GMET269799 ncbi Geobacter metallireducens GS-150
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP106370 ncbi Frankia sp. CcI31
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DRED349161 ncbi Desulfotomaculum reducens MI-10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
DARO159087 ncbi Dechloromonas aromatica RCB0
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJAP155077 Cellvibrio japonicus0
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29010
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB150
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSUI470137 ncbi Brucella suis ATCC 234450
BSUI204722 ncbi Brucella suis 13300
BSP376 Bradyrhizobium sp.0
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPER257313 ncbi Bordetella pertussis Tohama I0
BPAR257311 ncbi Bordetella parapertussis 128220
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23080
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M0
BLON206672 ncbi Bifidobacterium longum NCC27050
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1100
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BCAN483179 ncbi Brucella canis ATCC 233650
BBUR224326 ncbi Borrelia burgdorferi B310
BBRO257310 ncbi Bordetella bronchiseptica RB500
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9411
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN11
ASP62977 ncbi Acinetobacter sp. ADP10
ASP62928 ncbi Azoarcus sp. BH720
ASP232721 ncbi Acidovorax sp. JS420
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-11
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACRY349163 ncbi Acidiphilium cryptum JF-50
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK21
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3450
AAVE397945 ncbi Acidovorax citrulli AAC00-10
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  EG10304   EG10303   EG10295   EG10290   
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
WSUC273121
WPIP955
WPIP80849
VEIS391735
UURE95667
UURE95664
UPAR505682
UMET351160 RRC301
TVOL273116
TTUR377629
TTHE300852
TTHE262724
TTEN273068 TTE1868
TSP28240
TSP1755
TROS309801
TPSE340099
TPET390874
TPEN368408
TPAL243276
TMAR243274
TKOD69014 TK2019
TERY203124
TELO197221
TDEN326298
TDEN292415
TCRU317025
TACI273075
SWOL335541
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391295
SSP94122 SHEWANA3_3280
SSP84588
SSP64471
SSP387093
SSP292414
SSP1131
SSOL273057
SSED425104
SRUB309807
SPEA398579 SPEA_3381
SONE211586
SMUT210007
SMAR399550
SHAL458817 SHAL_3459
SGOR29390
SFUM335543
SELO269084
SDEN318161 SDEN_1117
SDEG203122
SBAL402882
SBAL399599
SALA317655
SACI56780 SYN_01427
SACI330779
RTYP257363
RSP357808
RSOL267608
RRUB269796
RRIC452659
RRIC392021
RPRO272947
RPOM246200
RPAL316058
RPAL316057
RPAL316056
RPAL316055
RPAL258594
RMET266264
RMAS416276
RFER338969
RFEL315456
REUT381666
REUT264198
RDEN375451
RCON272944
RCAS383372
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PTHE370438
PSTU379731
PSP312153
PSP117
PRUM264731
PPUT351746
PPUT160488
PPEN278197
PNAP365044
PMOB403833
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PING357804
PHOR70601
PHAL326442 PSHAA2565
PGIN242619
PFUR186497 PF0910
PFLU205922
PENT384676
PDIS435591
PCAR338963
PATL342610
PAST100379
PARS340102
PARC259536
PAER178306
PACN267747 PPA0425
PABY272844
OTSU357244
OCAR504832 OCAR_4887
NWIN323098
NSP387092
NSP35761
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NEUT335283
NEUR228410
NARO279238
MXAN246197
MVAN350058
MTUB419947
MTUB336982
MTHE349307
MTHE264732 MOTH_1465
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP409
MSP189918
MSP164757
MSP164756
MSED399549
MPUL272635
MPNE272634
MPET420662
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221 MMAR10_2512
MMAR368407
MMAR267377
MMAG342108
MLOT266835 MLL1150
MLEP272631
MLAB410358 MLAB_1378
MKAN190192
MJAN243232 MJ_0087
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MFLA265072
MEXT419610
MCAP340047
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAER449447
MAEO419665
MACE188937
MABS561007
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LMES203120
LLAC272623 L128386
LLAC272622 LACR_0373
LJOH257314
LINT363253
LINT267671
LINT189518
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCHO395495
LCAS321967
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
JSP375286
ILOI283942
IHOS453591
HWAL362976
HSOM228400
HSOM205914
HPYL85963
HPYL357544
HPY
HNEP81032
HMOD498761
HINF71421
HINF281310
HHEP235279
HHAL349124
HDUC233412
HBUT415426
HARS204773
HACI382638
GVIO251221
GURA351605
GSUL243231
GOXY290633
GMET269799
GFOR411154
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP106370 FRANCCI3_4241
FRANT
FPHI484022
FNUC190304
FNOD381764
FMAG334413
FJOH376686
ERUM302409
ERUM254945
ELIT314225
ECHA205920
ECAN269484
DVUL882
DSP255470
DSP216389
DSHI398580
DRED349161
DPSY177439
DOLE96561
DNOD246195
DETH243164
DDES207559
DARO159087
CVES412965
CTRA471473
CTRA471472
CTEP194439
CSUL444179
CSP78
CRUT413404
CPSY167879
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809 CPHY_2393
CPEL335992
CMUR243161
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEJ407148
CJEJ360109 JJD26997_0753
CJEJ354242
CJEJ195099
CJEJ192222
CJAP155077
CHYD246194
CHUT269798 CHU_1389
CHOM360107
CFET360106
CFEL264202
CDES477974
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBLO291272
CBLO203907
CAULO
CABO218497
BTUR314724
BTRI382640
BTHE226186
BSUI470137
BSUI204722
BSP376
BSP107806
BQUI283165
BPER257313
BPAR257311
BOVI236
BMEL359391
BMEL224914
BLON206672
BJAP224911
BHER314723
BHEN283166
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BCAN483179
BBUR224326
BBRO257310
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BAFZ390236
BABO262698 BRUAB2_0478
AYEL322098
AURANTIMONAS
ASP76114 EBA4019
ASP62977
ASP62928
ASP232721
APHA212042
APER272557
AMAR234826
ALAI441768
AFUL224325
AFER243159
AEHR187272 MLG_2821
ADEH290397
ACRY349163
ACEL351607
ABUT367737
ABOR393595 ABO_2369
ABAC204669
AAVE397945
AAEO224324


Organism features enriched in list (features available for 361 out of the 385 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 7.916e-83492
Arrangment:Pairs 2.617e-1040112
Disease:Gastroenteritis 0.0040208313
Disease:Pneumonia 0.0082914312
Endospores:Yes 1.952e-111053
GC_Content_Range7:70-100 0.0033027211
Genome_Size_Range5:0-2 8.090e-19139155
Genome_Size_Range5:4-6 2.592e-884184
Genome_Size_Range5:6-10 5.765e-71347
Genome_Size_Range9:0-1 0.00024942527
Genome_Size_Range9:1-2 1.952e-14114128
Genome_Size_Range9:4-5 0.00003674296
Genome_Size_Range9:5-6 0.00125194288
Genome_Size_Range9:6-8 0.00001671138
Gram_Stain:Gram_Neg 7.683e-6231333
Gram_Stain:Gram_Pos 6.143e-1947150
Habitat:Aquatic 9.582e-67491
Habitat:Multiple 1.610e-685178
Habitat:Specialized 0.00577504153
Habitat:Terrestrial 0.00142681131
Motility:No 0.004137281151
Motility:Yes 0.0022030150267
Oxygen_Req:Aerobic 0.0080713126185
Oxygen_Req:Anaerobic 6.720e-682102
Oxygen_Req:Facultative 3.591e-1876201
Oxygen_Req:Microaerophilic 0.00959791618
Pathogenic_in:Human 4.584e-1195213
Pathogenic_in:No 8.605e-6164226
Salinity:Non-halophilic 0.003388454106
Shape:Coccus 0.00165593982
Shape:Irregular_coccus 0.00024971717
Shape:Rod 2.450e-6189347
Shape:Sphere 0.00655011719
Shape:Spiral 1.032e-63334
Temp._range:Hyperthermophilic 0.00018632223
Temp._range:Mesophilic 4.361e-7271473



Back to top


ORGANISMS ENRICHED FOR GROUP:




Back to top


ORGANISMS DEPLETED FOR GROUP:




Back to top


PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1314 (fructose degradation)2241650.5980
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))1211070.5434
IDNCAT-PWY (L-idonate degradation)2461600.4992
PWY-3722 (glycine betaine biosynthesis II (Gram-positive bacteria))1411110.4889
GLUAMCAT-PWY (N-acetylglucosamine degradation I)3561980.4862
PWY0-381 (glycerol degradation I)4172130.4641
SERDEG-PWY (L-serine degradation)3491910.4542
PWY-5480 (pyruvate fermentation to ethanol I)109890.4445
GLYCOLATEMET-PWY (glycolate and glyoxylate degradation I)2701600.4348
PWY0-1295 (pyrimidine ribonucleosides degradation I)2391470.4293
SUCUTIL-PWY (sucrose degradation I)124940.4202
GLUCUROCAT-PWY (β-D-glucuronide and D-glucuronate degradation)2081320.4142
MANNIDEG-PWY (mannitol degradation I)99800.4119
RIBOKIN-PWY (ribose degradation)2791600.4118
GALACTITOLCAT-PWY (galactitol degradation)73650.4079
GALACT-GLUCUROCAT-PWY (superpathway of hexuronide and hexuronate degradation)1501050.4064
PWY0-1298 (pyrimidine deoxyribonucleosides degradation)3941980.4052



Back to top


PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG10303   EG10295   EG10290   
EG103040.9996390.9997090.99971
EG103030.9994150.99941
EG102950.999845
EG10290



Back to top


PAIRWISE BLAST SCORES:

  EG10304   EG10303   EG10295   EG10290   
EG103040.0f0-1.1e-512.4e-49
EG10303-0.0f0--
EG102952.7e-48-0.0f07.3e-55
EG102905.8e-46-3.2e-540.0f0



Back to top


PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- CPLX0-1981 (ferrichrome uptake system) (degree of match pw to cand: 0.286, degree of match cand to pw: 0.500, average score: 0.546)
  Genes in pathway or complex:
             0.3462 0.2289 EG10272 (exbD) EG10272-MONOMER (ExbD uptake of enterochelin; tonB-dependent uptake of B colicins)
             0.1894 0.1053 EG10271 (exbB) EG10271-MONOMER (ExbB protein; uptake of enterochelin; tonB-dependent uptake of B colicins)
             0.5897 0.4139 EG11012 (tonB) EG11012-MONOMER (TonB protein; energy transducer; uptake of iron, cyanocobalimin; sensitivity to phages, colicins)
             0.9953 0.9910 EG10302 (fhuA) EG10302-MONOMER (FhuA outer membrane protein receptor for ferrichrome, colicin M, and phages T1, T5, and phi80)
   *in cand* 0.9998 0.9996 EG10304 (fhuC) FHUC-MONOMER (FhuC)
   *in cand* 0.9996 0.9994 EG10303 (fhuB) FHUB-MONOMER (FhuB)
             0.9978 0.9954 EG10305 (fhuD) FHUD-MONOMER (FhuD)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9994 EG10290 (fecE) FECE-MONOMER (FecE)
   *in cand* 0.9997 0.9994 EG10295 (fepC) FEPC-MONOMER (FepC)

- ABC-11-CPLX (iron (III) hydroxamate ABC transporter) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.500, average score: 1.000)
  Genes in pathway or complex:
             0.9978 0.9954 EG10305 (fhuD) FHUD-MONOMER (FhuD)
   *in cand* 0.9996 0.9994 EG10303 (fhuB) FHUB-MONOMER (FhuB)
   *in cand* 0.9998 0.9996 EG10304 (fhuC) FHUC-MONOMER (FhuC)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9994 EG10290 (fecE) FECE-MONOMER (FecE)
   *in cand* 0.9997 0.9994 EG10295 (fepC) FEPC-MONOMER (FepC)



Back to top


GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10303 EG10304 (centered at EG10303)
EG10290 (centered at EG10290)
EG10295 (centered at EG10295)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG10304   EG10303   EG10295   EG10290   
227/623201/623223/623227/623
AAUR290340:2:Tyes015881643299
ABAU360910:0:Tyes0--0
ABOR393595:0:Tyes-0--
ACAU438753:0:Tyes3091310300
AEHR187272:0:Tyes-0--
AHYD196024:0:Tyes21992201-0
AMAR329726:8:Tyes-100
AMAR329726:9:Tyes0---
AMET293826:0:Tyes0-00
ANAE240017:0:Tyes1187-11870
AORE350688:0:Tyes2185021852566
APLE416269:0:Tyes02--
APLE434271:0:Tno02--
ASAL382245:5:Tyes2427242900
ASP1667:3:Tyes0-00
ASP76114:2:Tyes-0--
AVAR240292:3:Tyes2022
BABO262698:0:Tno---0
BAMB339670:3:Tno0100
BAMB398577:3:Tno0100
BAMY326423:0:Tyes3536035
BANT260799:0:Tno4658383604658
BANT261594:2:Tno4622381104622
BANT568206:2:Tyes163579901635
BANT592021:2:Tno4852401404852
BCEN331271:2:Tno0100
BCEN331272:3:Tyes0100
BCER226900:1:Tyes4661014661
BCER288681:0:Tno4567014567
BCER315749:1:Tyes0100
BCER405917:1:Tyes4574014574
BCER572264:1:Tno4771391204771
BCLA66692:0:Tyes0269500
BHAL272558:0:Tyes430143
BLIC279010:0:Tyes4647046
BMAL243160:1:Tno1011
BMAL320388:1:Tno1011
BMAL320389:1:Tyes0100
BPET94624:0:Tyes-0--
BPSE272560:1:Tyes1011
BPSE320372:1:Tno0100
BPSE320373:1:Tno0100
BPUM315750:0:Tyes4142041
BSP36773:2:Tyes0100
BSUB:0:Tyes3738037
BTHA271848:1:Tno1011
BTHU281309:1:Tno4496370504496
BTHU412694:1:Tno4156340304156
BVIE269482:7:Tyes0100
BWEI315730:4:Tyes4575374604575
BXEN266265:1:Tyes0138513861386
CACE272562:1:Tyes3033
CBEI290402:0:Tyes1571-15710
CBOT36826:1:Tno2022
CBOT441770:0:Tyes2022
CBOT441771:0:Tno2022
CBOT441772:1:Tno2022
CBOT498213:1:Tno2022
CBOT508765:1:Tyes0100
CBOT515621:2:Tyes2022
CBOT536232:0:Tno0-00
CDIF272563:1:Tyes0100
CDIP257309:0:Tyes0-467467
CEFF196164:0:Fyes0-00
CGLU196627:0:Tyes159-00
CHUT269798:0:Tyes-0--
CJEI306537:0:Tyes01536524
CJEJ360109:0:Tyes0---
CMIC31964:2:Tyes2602026022602
CMIC443906:2:Tyes2820028202820
CNOV386415:0:Tyes-011
CPER195102:1:Tyes1011
CPER195103:0:Tno1011
CPER289380:3:Tyes1011
CPHY357809:0:Tyes-0--
CSAL290398:0:Tyes2016831683
CSP501479:8:Fyes0-00
CTET212717:0:Tyes-011
CVIO243365:0:Tyes4460446446
DGEO319795:0:Tyes0100
DHAF138119:0:Tyes0290402601
DRAD243230:1:Tyes0100
ECAR218491:0:Tyes2257225517390
ECOL199310:0:Tno02470470
ECOL316407:0:Tno024324118
ECOL331111:6:Tno024284508
ECOL362663:0:Tno02454454
ECOL364106:1:Tno02420420
ECOL405955:2:Tyes02382382
ECOL409438:6:Tyes02512512
ECOL413997:0:Tno024074043
ECOL439855:4:Tno02430430
ECOL469008:0:Tno4034010680
ECOL481805:0:Tno2782278023290
ECOL585034:0:Tno02415415
ECOL585035:0:Tno024534528
ECOL585055:0:Tno024304737
ECOL585056:2:Tno025314692
ECOL585057:0:Tno024044616
ECOL585397:0:Tno024024838
ECOL83334:0:Tno02482482
ECOLI:0:Tno024454212
ECOO157:0:Tno02479479
EFAE226185:3:Tyes271720-
EFER585054:1:Tyes0223132313
ESP42895:1:Tyes02430430
FALN326424:0:Tyes0-00
FSP106370:0:Tyes-0--
FSP1855:0:Tyes0-00
GKAU235909:1:Tyes0130913101310
GTHE420246:1:Tyes0113011310
HAUR316274:2:Tyes1011
HCHE349521:0:Tyes2022932293
HINF374930:0:Tyes03--
HMAR272569:7:Tyes-011
HMUK485914:1:Tyes-100
HSAL478009:4:Tyes0100
HSP64091:2:Tno0100
JSP290400:1:Tyes-01-
KPNE272620:2:Tyes03560560
KRAD266940:2:Fyes1011
LINN272626:1:Tno3033
LLAC272622:5:Tyes-0--
LLAC272623:0:Tyes-0--
LMON169963:0:Tno0-00
LMON265669:0:Tyes0-00
LPLA220668:0:Tyes0-00
LSAK314315:0:Tyes02-0
LSPH444177:1:Tyes614011
LWEL386043:0:Tyes0-00
LXYL281090:0:Tyes0100
MAQU351348:2:Tyes0211031103
MJAN243232:2:Tyes-0--
MLAB410358:0:Tyes---0
MLOT266835:2:Tyes-0--
MMAR394221:0:Tyes-0--
MSME246196:0:Tyes0-00
MSP266779:3:Tyes-011
MSP400668:0:Tyes31831629960
MSUC221988:0:Tyes02--
MTHE264732:0:Tyes-0--
NFAR247156:2:Tyes7010701701
NSP103690:6:Tyes2022162216
OANT439375:4:Tyes695013011301
OCAR504832:0:Tyes-0--
OIHE221109:0:Tyes01900188
PACN267747:0:Tyes-0--
PAER208963:0:Tyes3644-00
PAER208964:0:Tno0-00
PCRY335284:1:Tyes1011
PFLU216595:1:Tyes0200
PFLU220664:0:Tyes0-00
PFUR186497:0:Tyes-0--
PHAL326442:1:Tyes-0--
PLUM243265:0:Fyes201842
PMEN399739:0:Tyes09130-
PMUL272843:1:Tyes0100
PPRO298386:1:Tyes--00
PPRO298386:2:Tyes20--
PPUT76869:0:Tno0-00
PSP296591:2:Tyes-100
PSP56811:2:Tyes02--
PSYR205918:0:Tyes1931-19310
PSYR223283:2:Tyes0-00
RETL347834:3:Tyes0--0
RETL347834:4:Tyes-0--
RLEG216596:3:Tyes20--
RSAL288705:0:Tyes118138111810
RSP101510:3:Fyes0-00
RSPH272943:3:Tyes--00
RSPH272943:4:Tyes01--
RSPH349101:1:Tno--00
RSPH349101:2:Tno01--
RSPH349102:4:Tyes0-00
RXYL266117:0:Tyes1011
SACI56780:0:Tyes-0--
SAGA205921:0:Tno0-00
SAGA208435:0:Tno0-00
SAGA211110:0:Tyes0-00
SARE391037:0:Tyes0-00
SAUR158878:1:Tno0158500
SAUR158879:1:Tno0149000
SAUR196620:0:Tno0155100
SAUR273036:0:Tno0147300
SAUR282458:0:Tno0100
SAUR282459:0:Tno0151800
SAUR359786:1:Tno0157300
SAUR359787:1:Tno0153100
SAUR367830:3:Tno0143500
SAUR418127:0:Tyes0157500
SAUR426430:0:Tno0151600
SAUR93061:0:Fno0173800
SAUR93062:1:Tno0142600
SAVE227882:1:Fyes5968059685968
SBOY300268:1:Tyes02289289
SCO:2:Fyes1295694412950
SDEN318161:0:Tyes-0--
SDYS300267:1:Tyes023323867
SENT209261:0:Tno0219761976
SENT220341:0:Tno02367367
SENT295319:0:Tno0218631863
SENT321314:2:Tno02437437
SENT454169:2:Tno02461461
SEPI176279:1:Tyes0-00
SEPI176280:0:Tno0-00
SERY405948:0:Tyes0-00
SFLE198214:0:Tyes02356356
SFLE373384:0:Tno02378378
SGLO343509:2:Tyes0100
SHAE279808:0:Tyes1011
SHAL458817:0:Tyes-0--
SHIGELLA:0:Tno02345345
SLAC55218:1:Fyes0-00
SLOI323850:0:Tyes01--
SMED366394:3:Tyes1011
SMEL266834:0:Tyes0-00
SPEA398579:0:Tno-0--
SPNE1313:0:Tyes0-00
SPNE170187:0:Tyes0-00
SPNE171101:0:Tno0-00
SPNE487213:0:Tno0-00
SPNE487214:0:Tno0-00
SPNE488221:0:Tno0-00
SPRO399741:1:Tyes55855600
SPYO160490:0:Tno0-00
SPYO186103:0:Tno0-00
SPYO193567:0:Tno0-00
SPYO198466:0:Tno0-00
SPYO286636:0:Tno0-00
SPYO293653:0:Tno0-00
SPYO319701:0:Tyes0-00
SPYO370551:0:Tno0-00
SPYO370552:0:Tno0-00
SPYO370553:0:Tno0-00
SPYO370554:0:Tyes0-00
SSAP342451:2:Tyes1011
SSON300269:1:Tyes023574070
SSP1148:0:Tyes2022
SSP321327:0:Tyes--00
SSP321332:0:Tyes--00
SSP644076:3:Fyes0-00
SSP94122:1:Tyes0---
SSUI391296:0:Tyes0--0
STHE292459:0:Tyes0-00
STRO369723:0:Tyes910-9100
STYP99287:1:Tyes02395395
TDEN243275:0:Tyes05480-
TFUS269800:0:Tyes0-00
TKOD69014:0:Tyes-0--
TLET416591:0:Tyes-100
TTEN273068:0:Tyes-0--
TWHI203267:0:Tyes--00
TWHI218496:0:Tno--00
UMET351160:0:Tyes-0--
VCHO:0:Tyes02616616
VCHO345073:1:Tno2197219900
VFIS312309:1:Tyes0200
VPAR223926:0:Tyes02216216
VVUL196600:1:Tyes0200
VVUL216895:0:Tno02-0
XAUT78245:1:Tyes03--
YENT393305:1:Tyes0228052805
YPES187410:5:Tno0218431843
YPES214092:3:Tno1769176700
YPES349746:2:Tno3021392139
YPES360102:3:Tyes2093209100
YPES377628:2:Tno0217801780
YPES386656:2:Tno-153500
YPSE273123:2:Tno02824824
YPSE349747:2:Tno87787500



Back to top