CANDIDATE ID: 382

CANDIDATE ID: 382

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9975383e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:   2.4000000e-14

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6960 (ydjI) (b1773)
   Products of gene:
     - G6960-MONOMER (predicted aldolase)

- EG12768 (kbaY) (b3137)
   Products of gene:
     - TAGAALDOL1-MONOMER (KbaY)
     - CPLX0-240 (tagatose-1,6-bisphosphate aldolase 1)
       Reactions:
        tagatose-1,6-bisphosphate  =  dihydroxyacetone phosphate + D-glyceraldehyde-3-phosphate
         In pathways
         GALACTITOLCAT-PWY (galactitol degradation)
         LACTOSECAT-PWY (LACTOSECAT-PWY)

- EG12419 (gatY) (b2096)
   Products of gene:
     - TAGAALDOL2-MONOMER (GatY)
     - CPLX0-241 (tagatose-1,6-bisphosphate aldolase 2)
       Reactions:
        tagatose-1,6-bisphosphate  =  dihydroxyacetone phosphate + D-glyceraldehyde-3-phosphate
         In pathways
         GALACTITOLCAT-PWY (galactitol degradation)
         LACTOSECAT-PWY (LACTOSECAT-PWY)

- EG10282 (fbaA) (b2925)
   Products of gene:
     - FRUCTBISALD-CLASSII-MONOMER (fructose bisphosphate aldolase monomer)
     - FRUCBISALD-CLASSII (fructose bisphosphate aldolase class II)
       Reactions:
        fructose-1,6-bisphosphate  =  dihydroxyacetone phosphate + D-glyceraldehyde-3-phosphate
         In pathways
         PWY-5464 (PWY-5464)
         PWY-6146 (PWY-6146)
         GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)
         GLYCOLYSIS-TCA-GLYOX-BYPASS (superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass)
         PHOTOALL-PWY (PHOTOALL-PWY)
         ANAEROFRUCAT-PWY (ANAEROFRUCAT-PWY)
         P441-PWY (P441-PWY)
         PWY-3801 (PWY-3801)
         PWY-1042 (PWY-1042)
         GLUCONEO-PWY (gluconeogenesis I)
         PWY-1861 (PWY-1861)
         P185-PWY (P185-PWY)
         P341-PWY (P341-PWY)
         PWY-6142 (PWY-6142)
         ANAGLYCOLYSIS-PWY (ANAGLYCOLYSIS-PWY)
         GLYCOLYSIS (glycolysis I)
         CALVIN-PWY (CALVIN-PWY)
         PWY-5484 (PWY-5484)



Back to top


ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 227
Effective number of orgs (counting one per cluster within 468 clusters): 144

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
WSUC273121 ncbi Wolinella succinogenes DSM 17403
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VFIS312309 ncbi Vibrio fischeri ES1144
UURE95667 Ureaplasma urealyticum serovar 134
UURE95664 Ureaplasma urealyticum serovar 103
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278154
UMET351160 ncbi uncultured methanogenic archaeon RC-I3
TTHE300852 ncbi Thermus thermophilus HB84
TTHE262724 ncbi Thermus thermophilus HB274
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB44
TSP28240 Thermotoga sp.3
TSP1755 Thermoanaerobacter sp.4
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332234
TPET390874 ncbi Thermotoga petrophila RKU-13
TPAL243276 ncbi Treponema pallidum pallidum Nichols3
TMAR243274 ncbi Thermotoga maritima MSB83
TLET416591 ncbi Thermotoga lettingae TMO3
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen4
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
STHE322159 ncbi Streptococcus thermophilus LMD-94
STHE299768 ncbi Streptococcus thermophilus CNRZ10664
STHE292459 ncbi Symbiobacterium thermophilum IAM 148634
STHE264199 ncbi Streptococcus thermophilus LMG 183114
SSUI391296 ncbi Streptococcus suis 98HAH334
SSON300269 ncbi Shigella sonnei Ss0464
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153054
SPYO370554 ncbi Streptococcus pyogenes MGAS107504
SPYO370553 ncbi Streptococcus pyogenes MGAS20964
SPYO370552 ncbi Streptococcus pyogenes MGAS102704
SPYO370551 ncbi Streptococcus pyogenes MGAS94294
SPYO319701 ncbi Streptococcus pyogenes MGAS61804
SPYO293653 ncbi Streptococcus pyogenes MGAS50054
SPYO286636 ncbi Streptococcus pyogenes MGAS103944
SPYO198466 ncbi Streptococcus pyogenes MGAS3154
SPYO193567 ncbi Streptococcus pyogenes SSI-14
SPYO186103 ncbi Streptococcus pyogenes MGAS82324
SPYO160490 ncbi Streptococcus pyogenes M1 GAS4
SPRO399741 ncbi Serratia proteamaculans 5684
SPNE488221 ncbi Streptococcus pneumoniae 705854
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-64
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-144
SPNE171101 ncbi Streptococcus pneumoniae R64
SPNE170187 ncbi Streptococcus pneumoniae G544
SPNE1313 Streptococcus pneumoniae4
SMUT210007 ncbi Streptococcus mutans UA1594
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14353
SGOR29390 Streptococcus gordonii Challis4
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23384
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122283
SEPI176279 ncbi Staphylococcus epidermidis RP62A3
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SCO ncbi Streptomyces coelicolor A3(2)4
SBOY300268 ncbi Shigella boydii Sb2274
SAVE227882 ncbi Streptomyces avermitilis MA-46804
SAUR93062 ncbi Staphylococcus aureus aureus COL3
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83253
SAUR426430 ncbi Staphylococcus aureus aureus Newman3
SAUR418127 ncbi Staphylococcus aureus aureus Mu33
SAUR367830 Staphylococcus aureus aureus USA3003
SAUR359787 ncbi Staphylococcus aureus aureus JH13
SAUR359786 ncbi Staphylococcus aureus aureus JH93
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4763
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2523
SAUR273036 ncbi Staphylococcus aureus RF1223
SAUR196620 ncbi Staphylococcus aureus aureus MW23
SAUR158879 ncbi Staphylococcus aureus aureus N3153
SAUR158878 ncbi Staphylococcus aureus aureus Mu503
SAGA211110 ncbi Streptococcus agalactiae NEM3164
SAGA208435 ncbi Streptococcus agalactiae 2603V/R4
SAGA205921 ncbi Streptococcus agalactiae A9094
RMET266264 ncbi Ralstonia metallidurans CH344
RALB246199 Ruminococcus albus 84
PTHE370438 ncbi Pelotomaculum thermopropionicum SI3
PRUM264731 ncbi Prevotella ruminicola 233
PPRO298386 ncbi Photobacterium profundum SS94
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257453
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PMOB403833 ncbi Petrotoga mobilis SJ954
PLUT319225 ncbi Chlorobium luteolum DSM 2734
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PINT246198 Prevotella intermedia 173
PDIS435591 ncbi Parabacteroides distasonis ATCC 85033
PCAR338963 ncbi Pelobacter carbinolicus DSM 23804
PAST100379 Onion yellows phytoplasma4
OIHE221109 ncbi Oceanobacillus iheyensis HTE8314
MTHE264732 ncbi Moorella thermoacetica ATCC 390734
MSYN262723 ncbi Mycoplasma synoviae 534
MSME246196 ncbi Mycobacterium smegmatis MC2 1554
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP4
MPNE272634 ncbi Mycoplasma pneumoniae M1294
MPEN272633 ncbi Mycoplasma penetrans HF-24
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG13
MMOB267748 ncbi Mycoplasma mobile 163K3
MHYO295358 ncbi Mycoplasma hyopneumoniae 2324
MHYO262722 ncbi Mycoplasma hyopneumoniae 74484
MHYO262719 ncbi Mycoplasma hyopneumoniae J4
MGEN243273 ncbi Mycoplasma genitalium G374
MFLO265311 ncbi Mesoplasma florum L13
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273433
LXYL281090 ncbi Leifsonia xyli xyli CTCB074
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53344
LSPH444177 ncbi Lysinibacillus sphaericus C3-414
LSAK314315 ncbi Lactobacillus sakei sakei 23K4
LREU557436 ncbi Lactobacillus reuteri DSM 200164
LPLA220668 ncbi Lactobacillus plantarum WCFS14
LMON265669 ncbi Listeria monocytogenes 4b F23654
LMON169963 ncbi Listeria monocytogenes EGD-e4
LLAC272623 ncbi Lactococcus lactis lactis Il14033
LLAC272622 ncbi Lactococcus lactis cremoris SK113
LJOH257314 ncbi Lactobacillus johnsonii NCC 5333
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-004
LINN272626 ncbi Listeria innocua Clip112624
LGAS324831 ncbi Lactobacillus gasseri ATCC 333233
LCAS321967 ncbi Lactobacillus casei ATCC 3343
KRAD266940 ncbi Kineococcus radiotolerans SRS302164
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
HSOM228400 ncbi Haemophilus somnus 23364
HPYL85963 ncbi Helicobacter pylori J993
HPYL357544 ncbi Helicobacter pylori HPAG13
HPY ncbi Helicobacter pylori 266953
HMOD498761 ncbi Heliobacterium modesticaldum Ice14
HHEP235279 ncbi Helicobacter hepaticus ATCC 514493
HACI382638 ncbi Helicobacter acinonychis Sheeba3
GVIO251221 ncbi Gloeobacter violaceus PCC 74213
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-24
GKAU235909 ncbi Geobacillus kaustophilus HTA4264
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S853
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B13
FMAG334413 ncbi Finegoldia magna ATCC 293283
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
EFAE226185 ncbi Enterococcus faecalis V5834
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough4
DRED349161 ncbi Desulfotomaculum reducens MI-14
DRAD243230 ncbi Deinococcus radiodurans R14
DHAF138119 ncbi Desulfitobacterium hafniense Y514
DGEO319795 ncbi Deinococcus geothermalis DSM 113004
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G204
CTET212717 ncbi Clostridium tetani E883
CTEP194439 ncbi Chlorobium tepidum TLS4
CPHY357809 ncbi Clostridium phytofermentans ISDg4
CPER289380 ncbi Clostridium perfringens SM1014
CPER195103 ncbi Clostridium perfringens ATCC 131244
CPER195102 ncbi Clostridium perfringens 134
CNOV386415 ncbi Clostridium novyi NT4
CKLU431943 ncbi Clostridium kluyveri DSM 5553
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29014
CDIF272563 ncbi Clostridium difficile 6304
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C4
CCHL340177 ncbi Chlorobium chlorochromatii CaD34
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto4
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6574
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B4
CBOT498213 ncbi Clostridium botulinum B1 str. Okra4
CBOT441772 ncbi Clostridium botulinum F str. Langeland4
CBOT441771 ncbi Clostridium botulinum A str. Hall4
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193974
CBOT36826 Clostridium botulinum A4
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80524
CACE272562 ncbi Clostridium acetobutylicum ATCC 8244
BWEI315730 ncbi Bacillus weihenstephanensis KBAB43
BTHU412694 ncbi Bacillus thuringiensis Al Hakam3
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-273
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54823
BSUB ncbi Bacillus subtilis subtilis 1683
BPUM315750 ncbi Bacillus pumilus SAFR-0324
BLIC279010 ncbi Bacillus licheniformis ATCC 145804
BHAL272558 ncbi Bacillus halodurans C-1254
BFRA295405 ncbi Bacteroides fragilis YCH463
BFRA272559 ncbi Bacteroides fragilis NCTC 93433
BCLA66692 ncbi Bacillus clausii KSM-K164
BCER572264 ncbi Bacillus cereus 03BB1023
BCER405917 Bacillus cereus W3
BCER315749 ncbi Bacillus cytotoxicus NVH 391-983
BCER288681 ncbi Bacillus cereus E33L3
BCER226900 ncbi Bacillus cereus ATCC 145793
BANT592021 ncbi Bacillus anthracis A02483
BANT568206 ncbi Bacillus anthracis CDC 6843
BANT261594 ncbi Bacillus anthracis Ames Ancestor3
BANT260799 ncbi Bacillus anthracis Sterne3
BAMY326423 ncbi Bacillus amyloliquefaciens FZB423
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB4
ASP1667 Arthrobacter sp.4
AORE350688 ncbi Alkaliphilus oremlandii OhILAs4
AMET293826 ncbi Alkaliphilus metalliredigens QYMF3
ALAI441768 ncbi Acholeplasma laidlawii PG-8A4
AHYD196024 Aeromonas hydrophila dhakensis4
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3453
AAUR290340 ncbi Arthrobacter aurescens TC14
AAEO224324 ncbi Aquifex aeolicus VF54


Names of the homologs of the genes in the group in each of these orgs
  G6960   EG12768   EG12419   EG10282   
YPSE349747 YPSIP31758_4026YPSIP31758_0929YPSIP31758_0929YPSIP31758_0850
YPSE273123 YPTB3803YPTB3088YPTB3088YPTB3195
YPES386656 YPDSF_3324YPDSF_0670YPDSF_0670YPDSF_0593
YPES377628 YPN_3609YPN_3046YPN_3046YPN_3119
YPES360102 YPA_3788YPA_0426YPA_0426YPA_0344
YPES349746 YPANGOLA_A3364YPANGOLA_A3364YPANGOLA_A3364YPANGOLA_A3817
YPES214092 YPO3960YPO0844YPO0844YPO0920
YPES187410 Y3869Y3229Y3229Y3307
WSUC273121 WS1280WS1280WS1280
VVUL216895 VV2_1017VV2_1017VV2_1017VV1_1541
VVUL196600 VVA1509VVA1509VVA1509VV2857
VFIS312309 VFA0989VFA0989VFA0989VF0443
UURE95667 UU596UU596UU596UU596
UURE95664 UUR10_0701UUR10_0701UUR10_0701
UPAR505682 UPA3_0636UPA3_0636UPA3_0636UPA3_0636
UMET351160 RCIX1359RCIX1359RCIX1359
TTHE300852 TTHA1773TTHA1773TTHA1773TTHA1773
TTHE262724 TT_C1414TT_C1414TT_C1414TT_C1414
TTEN273068 TTE0137TTE0137TTE0137TTE0137
TSP28240 TRQ2_0675TRQ2_0675TRQ2_0675
TSP1755 TETH514_0088TETH514_0088TETH514_0088TETH514_0088
TPSE340099 TETH39_2115TETH39_2115TETH39_2115TETH39_2115
TPET390874 TPET_0651TPET_0651TPET_0651
TPAL243276 TP_0662TP_0662TP_0662
TMAR243274 TM_0273TM_0273TM_0273
TLET416591 TLET_1891TLET_1891TLET_1891
SWOL335541 SWOL_2411SWOL_2411SWOL_2411SWOL_2411
STYP99287 STM3253STM3253STM3253STM3068
STHE322159 STER_1876STER_1876STER_1876STER_1876
STHE299768 STR1899STR1899STR1899STR1899
STHE292459 STH1245STH1245STH1245STH1245
STHE264199 STU1899STU1899STU1899STU1899
SSUI391296 SSU98_0330SSU98_0330SSU98_0330SSU98_0330
SSON300269 SSO_2144SSO_2144SSO_2144SSO_3077
SSAP342451 SSP0759SSP0759SSP0759SSP0759
SPYO370554 MGAS10750_SPY1663MGAS10750_SPY1663MGAS10750_SPY1663MGAS10750_SPY1663
SPYO370553 MGAS2096_SPY1631MGAS2096_SPY1631MGAS2096_SPY1631MGAS2096_SPY1631
SPYO370552 MGAS10270_SPY1676MGAS10270_SPY1676MGAS10270_SPY1676MGAS10270_SPY1676
SPYO370551 MGAS9429_SPY1610MGAS9429_SPY1610MGAS9429_SPY1610MGAS9429_SPY1610
SPYO319701 M28_SPY1597M28_SPY1597M28_SPY1597M28_SPY1597
SPYO293653 M5005_SPY1607M5005_SPY1607M5005_SPY1607M5005_SPY1607
SPYO286636 M6_SPY1616M6_SPY1616M6_SPY1616M6_SPY1616
SPYO198466 SPYM3_1630SPYM3_1630SPYM3_1630SPYM3_1630
SPYO193567 SPS0237SPS0237SPS0237SPS0237
SPYO186103 SPYM18_1954SPYM18_1954SPYM18_1954SPYM18_1954
SPYO160490 SPY1889SPY1889SPY1889SPY1889
SPRO399741 SPRO_1033SPRO_2579SPRO_2579SPRO_3944
SPNE488221 SP70585_0667SP70585_0667SP70585_0667SP70585_0667
SPNE487214 SPH_0699SPH_0699SPH_0699SPH_0699
SPNE487213 SPT_0631SPT_0631SPT_0631SPT_0631
SPNE171101 SPR0530SPR0530SPR0530SPR0530
SPNE170187 SPN03257SPN03257SPN03257SPN03257
SPNE1313 SPJ_0557SPJ_0557SPJ_0557SPJ_0557
SMUT210007 SMU_99SMU_99SMU_99SMU_99
SHIGELLA S1565GATYGATYFBA
SHAE279808 SH0910SH0910SH0910
SGOR29390 SGO_1745SGO_1745SGO_1745SGO_1745
SFLE373384 SFV_1442SFV_2151SFV_2151SFV_2971
SFLE198214 AAN43047.1AAN43691.1AAN43691.1AAN44392.1
SERY405948 SACE_6318SACE_6318SACE_6318SACE_7180
SEPI176280 SE_1723SE_1723SE_1723
SEPI176279 SERP1732SERP1732SERP1732
SENT454169 SEHA_C3551SEHA_C3551SEHA_C3551SEHA_C3305
SENT321314 SCH_1310SCH_3197SCH_3197SCH_3010
SENT295319 SPA3122SPA3122SPA3122SPA2939
SENT220341 STY3435STY3435STY3435STY3226
SENT209261 T3173T3173T3173T2987
SDYS300267 SDY_4132SDY_2269SDY_2269SDY_3157
SCO SCO5852SCO5852SCO5852SCO3649
SBOY300268 SBO_0917SBO_3248SBO_0917SBO_3068
SAVE227882 SAV1445SAV1445SAV1445SAV4523
SAUR93062 SACOL2117SACOL2117SACOL2117
SAUR93061 SAOUHSC_02366SAOUHSC_02366SAOUHSC_02366
SAUR426430 NWMN_2029NWMN_2029NWMN_2029
SAUR418127 SAHV_2109SAHV_2109SAHV_2109
SAUR367830 SAUSA300_2079SAUSA300_2079SAUSA300_2079
SAUR359787 SAURJH1_2199SAURJH1_2199SAURJH1_2199
SAUR359786 SAURJH9_2161SAURJH9_2161SAURJH9_2161
SAUR282459 SAS2028SAS2028SAS2028
SAUR282458 SAR2213SAR2213SAR2213
SAUR273036 SAB2009CSAB2009CSAB2009C
SAUR196620 MW2049MW2049MW2049
SAUR158879 SA1927SA1927SA1927
SAUR158878 SAV2125SAV2125SAV2125
SAGA211110 GBS0125GBS0125GBS0125GBS0125
SAGA208435 SAG_0127SAG_0127SAG_0127SAG_0127
SAGA205921 SAK_0178SAK_0178SAK_0178SAK_0178
RMET266264 RMET_1492RMET_1492RMET_1492RMET_0503
RALB246199 GRAORF_2602GRAORF_2602GRAORF_2602GRAORF_2602
PTHE370438 PTH_2838PTH_2838PTH_2838
PRUM264731 GFRORF2062GFRORF2062GFRORF2062
PPRO298386 PBPRB0157PBPRB0157PBPRB0157PBPRA3130
PPEN278197 PEPE_1352PEPE_1352PEPE_1352
PMUL272843 PM1373PM1373PM1373PM1861
PMOB403833 PMOB_0646PMOB_0646PMOB_0646PMOB_0646
PLUT319225 PLUT_1021PLUT_1021PLUT_1021PLUT_1021
PLUM243265 PLU0839PLU0839PLU0839PLU0957
PINT246198 PIN_A1109PIN_A1109PIN_A1109
PDIS435591 BDI_1944BDI_1944BDI_1944
PCAR338963 PCAR_2253PCAR_2253PCAR_2253PCAR_2253
PAST100379 PAM172PAM172PAM172PAM172
OIHE221109 OB3005OB3005OB3005OB3005
MTHE264732 MOTH_0609MOTH_0609MOTH_0609MOTH_0609
MSYN262723 MS53_0354MS53_0354MS53_0354MS53_0354
MSME246196 MSMEG_1375MSMEG_1375MSMEG_1375MSMEG_0752
MPUL272635 MYPU_1100MYPU_1100MYPU_1100MYPU_1100
MPNE272634 MPN025MPN025MPN025MPN025
MPEN272633 MYPE10340MYPE10340MYPE10340MYPE10340
MMYC272632 MSC_0644MSC_0644MSC_0644
MMOB267748 MMOB1260MMOB1260MMOB1260
MHYO295358 MHP014MHP014MHP014MHP014
MHYO262722 MHP7448_0014MHP7448_0014MHP7448_0014MHP7448_0014
MHYO262719 MHJ_0014MHJ_0014MHJ_0014MHJ_0014
MGEN243273 MG_023MG_023MG_023MG_023
MFLO265311 MFL644MFL644MFL644
MCAP340047 MCAP_0616MCAP_0616MCAP_0616
LXYL281090 LXX19340LXX19340LXX19340LXX16680
LWEL386043 LWE2506LWE2506LWE2152LWE0316
LSPH444177 BSPH_0982BSPH_1256BSPH_1256BSPH_1256
LSAK314315 LSA1527LSA1527LSA1527LSA1527
LREU557436 LREU_0238LREU_0238LREU_0238LREU_0238
LPLA220668 LP_0330LP_0330LP_0330LP_0330
LMON265669 LMOF2365_2167LMOF2365_2528LMOF2365_0379LMOF2365_0379
LMON169963 LMO2556LMO2556LMO2133LMO0359
LLAC272623 L0009L0009L0009
LLAC272622 LACR_2168LACR_2168LACR_2168
LJOH257314 LJ_0687LJ_0687LJ_0687
LINT363253 LI0763LI0763LI0763LI0763
LINN272626 LIN2701LIN2701LIN2238LIN0378
LGAS324831 LGAS_0467LGAS_0467LGAS_0467
LCAS321967 LSEI_2704LSEI_0328LSEI_0328
KRAD266940 KRAD_2157KRAD_2157KRAD_2157KRAD_4124
KPNE272620 GKPORF_B4675GKPORF_B4675GKPORF_B4675GKPORF_B2709
HSOM228400 HSM_0819HSM_0819HSM_0819HSM_0074
HPYL85963 JHP0162JHP0162JHP0162
HPYL357544 HPAG1_0172HPAG1_0172HPAG1_0172
HPY HP0176HP0176HP0176
HMOD498761 HM1_1076HM1_1076HM1_1076HM1_1076
HHEP235279 HH_0106HH_0106HH_0106
HACI382638 HAC_0357HAC_0357HAC_0357
GVIO251221 GLR2533GLR2533GLR2533
GTHE420246 GTNG_3331GTNG_1805GTNG_1805GTNG_1805
GKAU235909 GK3386GK3386GK1886GK1886
FSUC59374 FSU0150FSU0150FSU0150
FNOD381764 FNOD_0761FNOD_0761FNOD_0761
FMAG334413 FMG_1283FMG_1283FMG_1283
ESP42895 ENT638_0285ENT638_3578ENT638_3578ENT638_3338
EFER585054 EFER_4354EFER_4354EFER_4354EFER_2857
EFAE226185 EF_1167EF_1167EF_1167EF_1167
ECOO157 Z2811AGAYGATYFBA
ECOL83334 ECS2482ECS4017ECS2899ECS3796
ECOL585397 ECED1_1977ECED1_3801ECED1_3913ECED1_3380
ECOL585057 ECIAI39_1280ECIAI39_3638ECIAI39_0921ECIAI39_3339
ECOL585056 ECUMN_2062ECUMN_3621ECUMN_2428ECUMN_3270
ECOL585055 EC55989_1942EC55989_3557EC55989_2351EC55989_3213
ECOL585035 ECS88_1825ECS88_3525ECS88_2238ECS88_3201
ECOL585034 ECIAI1_1836ECIAI1_3287ECIAI1_2170ECIAI1_3045
ECOL481805 ECOLC_1859ECOLC_0561ECOLC_1551ECOLC_0785
ECOL469008 ECBD_1871ECBD_0603ECBD_1561ECBD_0813
ECOL439855 ECSMS35_1418ECSMS35_3436ECSMS35_0968ECSMS35_3062
ECOL413997 ECB_01742ECB_03004ECB_02024ECB_02756
ECOL409438 ECSE_1944ECSE_3423ECSE_2365ECSE_3189
ECOL405955 APECO1_842APECO1_3290APECO1_4449APECO1_3608
ECOL364106 UTI89_C1969UTI89_C3568UTI89_C2369UTI89_C3308
ECOL362663 ECP_1721ECP_3229ECP_2134ECP_2914
ECOL331111 ECE24377A_1997ECE24377A_3619ECE24377A_2384ECE24377A_3253
ECOL316407 ECK1771:JW1762:B1773ECK3125:JW3106:B3137ECK2089:JW5343:B2096ECK2921:JW2892:B2925
ECOL199310 C2177C3894C2621C3503
ECAR218491 ECA0338ECA0338ECA0339ECA3911
DVUL882 DVU_2143DVU_2143DVU_2143DVU_2143
DRED349161 DRED_3176DRED_3176DRED_3176DRED_3176
DRAD243230 DR_1589DR_1589DR_1589DR_1589
DHAF138119 DSY4939DSY4939DSY4939DSY4939
DGEO319795 DGEO_2083DGEO_2083DGEO_2083DGEO_2083
DDES207559 DDE_2341DDE_2341DDE_2341DDE_2341
CTET212717 CTC_00507CTC_00341CTC_00341
CTEP194439 CT_1053CT_1053CT_1053CT_1053
CPHY357809 CPHY_3683CPHY_3683CPHY_3683CPHY_3683
CPER289380 CPR_2645CPR_2645CPR_2645CPR_1350
CPER195103 CPF_2962CPF_2962CPF_2962CPF_1557
CPER195102 CPE2626CPE2626CPE2626CPE1350
CNOV386415 NT01CX_0290NT01CX_0290NT01CX_0290NT01CX_0290
CKLU431943 CKL_3599CKL_3599CKL_3599
CHYD246194 CHY_0128CHY_0128CHY_0128CHY_0128
CDIF272563 CD3074CD3074CD3074CD3135
CDES477974 DAUD_2175DAUD_2175DAUD_2175DAUD_2175
CCHL340177 CAG_0728CAG_0728CAG_0728CAG_0728
CBOT536232 CLM_2210CLM_2210CLM_2210CLM_2210
CBOT515621 CLJ_B2198CLJ_B2198CLJ_B2198CLJ_B2198
CBOT508765 CLL_A1301CLL_A3127CLL_A3127CLL_A3127
CBOT498213 CLD_2631CLD_2631CLD_2631CLD_2631
CBOT441772 CLI_2060CLI_2060CLI_2060CLI_2060
CBOT441771 CLC_1939CLC_1939CLC_1939CLC_1939
CBOT441770 CLB_1933CLB_1933CLB_1933CLB_1933
CBOT36826 CBO1993CBO1993CBO1993CBO1993
CBEI290402 CBEI_4551CBEI_1903CBEI_1903CBEI_1903
CACE272562 CAC2952CAC2952CAC2952CAC2952
BWEI315730 BCERKBAB4_5133BCERKBAB4_5133BCERKBAB4_5133
BTHU412694 BALH_4833BALH_4833BALH_4833
BTHU281309 BT9727_5019BT9727_5019BT9727_5019
BTHE226186 BT_1691BT_1691BT_1691
BSUB BSU37120BSU37120BSU37120
BPUM315750 BPUM_3357BPUM_1767BPUM_1767BPUM_1767
BLIC279010 BL03969BL01900BL01900BL01900
BHAL272558 BH3786BH3786BH3786BH3786
BFRA295405 BF3299BF3299BF3299
BFRA272559 BF3138BF3138BF3138
BCLA66692 ABC0445ABC3195ABC3568ABC0445
BCER572264 BCA_5485BCA_5485BCA_5485
BCER405917 BCE_5465BCE_1906BCE_1906
BCER315749 BCER98_3856BCER98_3856BCER98_3856
BCER288681 BCE33L5035BCE33L1641BCE33L1641
BCER226900 BC_5335BC_5335BC_5335
BANT592021 BAA_5605BAA_5605BAA_5605
BANT568206 BAMEG_5624BAMEG_5624BAMEG_5624
BANT261594 GBAA5580GBAA5580GBAA5580
BANT260799 BAS5184BAS5184BAS5184
BAMY326423 RBAM_034280RBAM_034280RBAM_034280
AYEL322098 AYWB_547AYWB_547AYWB_547AYWB_547
ASP1667 ARTH_1712ARTH_1712ARTH_1712ARTH_0518
AORE350688 CLOS_0719CLOS_0719CLOS_0719CLOS_0719
AMET293826 AMET_3675AMET_3675AMET_3675
ALAI441768 ACL_1395ACL_1395ACL_1395ACL_1395
AHYD196024 AHA_0805AHA_0805AHA_0805AHA_0782
ABAC204669 ACID345_1613ACID345_1613ACID345_1613
AAUR290340 AAUR_1469AAUR_1469AAUR_1469AAUR_0555
AAEO224324 AQ_1390AQ_1390AQ_1390AQ_1390


Organism features enriched in list (features available for 211 out of the 227 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 1.119e-106192
Arrangment:Clusters 6.640e-71617
Arrangment:Pairs 4.593e-1171112
Disease:Botulism 0.006022955
Disease:Bubonic_plague 0.002146666
Disease:Dysentery 0.002146666
Disease:Pneumonia 0.00093261012
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00001181111
Disease:Wide_range_of_infections 0.00001181111
Endospores:Yes 1.778e-154653
GC_Content_Range4:0-40 9.004e-10111213
GC_Content_Range4:60-100 8.378e-1516145
GC_Content_Range7:0-30 0.00254192647
GC_Content_Range7:30-40 1.180e-685166
GC_Content_Range7:60-70 7.072e-1612134
Genome_Size_Range5:4-6 0.003459780184
Genome_Size_Range5:6-10 0.0005535747
Genome_Size_Range9:4-5 0.00944604496
Genome_Size_Range9:6-8 0.0002069438
Gram_Stain:Gram_Neg 5.381e-890333
Gram_Stain:Gram_Pos 8.990e-25107150
Habitat:Aquatic 4.023e-71391
Habitat:Host-associated 0.008644886206
Optimal_temp.:- 0.000044171257
Optimal_temp.:30-35 0.009687567
Optimal_temp.:30-37 7.017e-91818
Optimal_temp.:37 1.137e-660106
Oxygen_Req:Aerobic 2.097e-1329185
Oxygen_Req:Anaerobic 0.006864947102
Oxygen_Req:Facultative 2.015e-20124201
Pathogenic_in:Human 1.295e-7106213
Pathogenic_in:No 0.000143362226
Salinity:Non-halophilic 0.000048156106
Shape:Coccus 5.209e-75082
Shape:Sphere 0.00068561419
Temp._range:Mesophilic 0.0007446185473



Back to top


ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 389
Effective number of orgs (counting one per cluster within 468 clusters): 319

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80811
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106331
VEIS391735 ncbi Verminephrobacter eiseniae EF01-20
VCHO345073 ncbi Vibrio cholerae O3951
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169611
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79011
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPEN368408 ncbi Thermofilum pendens Hrk 50
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX1
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252591
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 70
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP94122 ncbi Shewanella sp. ANA-30
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP644076 Silicibacter sp. TrichCH4B0
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP292414 ncbi Ruegeria sp. TM10400
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSED425104 ncbi Shewanella sediminis HAW-EB30
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPEA398579 ncbi Shewanella pealeana ATCC 7003450
SONE211586 ncbi Shewanella oneidensis MR-10
SMEL266834 ncbi Sinorhizobium meliloti 10210
SMED366394 ncbi Sinorhizobium medicae WSM4190
SMAR399550 ncbi Staphylothermus marinus F10
SLOI323850 ncbi Shewanella loihica PV-40
SLAC55218 Ruegeria lacuscaerulensis1
SHAL458817 ncbi Shewanella halifaxensis HAW-EB40
SGLO343509 ncbi Sodalis glossinidius morsitans1
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB1
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2170
SDEG203122 ncbi Saccharophagus degradans 2-401
SBAL402882 ncbi Shewanella baltica OS1850
SBAL399599 ncbi Shewanella baltica OS1950
SARE391037 ncbi Salinispora arenicola CNS-2051
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SACI56780 ncbi Syntrophus aciditrophicus SB1
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170250
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170290
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.10
RSP357808 ncbi Roseiflexus sp. RS-10
RSP101510 ncbi Rhodococcus jostii RHA11
RSOL267608 ncbi Ralstonia solanacearum GMI10001
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111700
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-30
RPAL316058 ncbi Rhodopseudomonas palustris HaA20
RPAL316057 ncbi Rhodopseudomonas palustris BisB50
RPAL316056 ncbi Rhodopseudomonas palustris BisB180
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RPAL258594 ncbi Rhodopseudomonas palustris CGA0090
RMAS416276 ncbi Rickettsia massiliae MTU50
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38410
RFER338969 ncbi Rhodoferax ferrireducens T1180
RFEL315456 ncbi Rickettsia felis URRWXCal20
REUT381666 ncbi Ralstonia eutropha H161
REUT264198 ncbi Ralstonia eutropha JMP1341
RETL347834 ncbi Rhizobium etli CFN 420
RDEN375451 ncbi Roseobacter denitrificans OCh 1140
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30001
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a1
PSTU379731 ncbi Pseudomonas stutzeri A15011
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-11
PSP296591 ncbi Polaromonas sp. JS6660
PSP117 Pirellula sp.1
PPUT76869 ncbi Pseudomonas putida GB-10
PPUT351746 ncbi Pseudomonas putida F10
PPUT160488 ncbi Pseudomonas putida KT24400
PNAP365044 ncbi Polaromonas naphthalenivorans CJ20
PMEN399739 ncbi Pseudomonas mendocina ymp1
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PING357804 ncbi Psychromonas ingrahamii 371
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1251
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PFLU220664 ncbi Pseudomonas fluorescens Pf-50
PFLU216595 ncbi Pseudomonas fluorescens SBW250
PFLU205922 ncbi Pseudomonas fluorescens Pf0-10
PENT384676 ncbi Pseudomonas entomophila L480
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER208964 ncbi Pseudomonas aeruginosa PAO11
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA141
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OCAR504832 ncbi Oligotropha carboxidovorans OM50
OANT439375 ncbi Ochrobactrum anthropi ATCC 491880
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSP35761 Nocardioides sp.1
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534421
NMEN272831 ncbi Neisseria meningitidis FAM181
NMEN122587 ncbi Neisseria meningitidis Z24911
NMEN122586 ncbi Neisseria meningitidis MC581
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10901
NFAR247156 ncbi Nocardia farcinica IFM 101521
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16220
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E1
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP409 Methylobacterium sp.0
MSP400668 ncbi Marinomonas sp. MWYL10
MSP266779 ncbi Chelativorans sp. BNC10
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPET420662 ncbi Methylibium petroleiphilum PM10
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLOT266835 ncbi Mesorhizobium loti MAFF3030990
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MFLA265072 ncbi Methylobacillus flagellatus KT0
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT81
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LCHO395495 ncbi Leptothrix cholodnii SP-61
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
JSP375286 ncbi Janthinobacterium sp. Marseille1
JSP290400 ncbi Jannaschia sp. CCS11
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM205914 ncbi Haemophilus somnus 129PT1
HSAL478009 ncbi Halobacterium salinarum R10
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HINF71421 ncbi Haemophilus influenzae Rd KW201
HINF374930 ncbi Haemophilus influenzae PittEE1
HINF281310 ncbi Haemophilus influenzae 86-028NP1
HHAL349124 ncbi Halorhodospira halophila SL10
HDUC233412 ncbi Haemophilus ducreyi 35000HP1
HCHE349521 ncbi Hahella chejuensis KCTC 23961
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
HARS204773 ncbi Herminiimonas arsenicoxydans1
GURA351605 ncbi Geobacter uraniireducens Rf40
GSUL243231 ncbi Geobacter sulfurreducens PCA0
GOXY290633 ncbi Gluconobacter oxydans 621H1
GMET269799 ncbi Geobacter metallireducens GS-150
GFOR411154 ncbi Gramella forsetii KT08031
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-001
FTUL418136 ncbi Francisella tularensis tularensis WY96-34181
FTUL393115 ncbi Francisella tularensis tularensis FSC1981
FTUL393011 ncbi Francisella tularensis holarctica OSU181
FTUL351581 Francisella tularensis holarctica FSC2001
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI31
FRANT ncbi Francisella tularensis tularensis SCHU S41
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A1
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DARO159087 ncbi Dechloromonas aromatica RCB0
CVIO243365 ncbi Chromobacterium violaceum ATCC 124721
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CSP501479 Citreicella sp. SE450
CSAL290398 ncbi Chromohalobacter salexigens DSM 30431
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CJEI306537 ncbi Corynebacterium jeikeium K4111
CJAP155077 Cellvibrio japonicus1
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFET360106 ncbi Campylobacter fetus fetus 82-401
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN1
CBLO203907 ncbi Candidatus Blochmannia floridanus1
CAULO ncbi Caulobacter crescentus CB150
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BVIE269482 ncbi Burkholderia vietnamiensis G40
BTUR314724 ncbi Borrelia turicatae 91E1351
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHA271848 ncbi Burkholderia thailandensis E2640
BSUI470137 ncbi Brucella suis ATCC 234450
BSUI204722 ncbi Brucella suis 13300
BSP376 Bradyrhizobium sp.0
BSP36773 Burkholderia sp.1
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)1
BQUI283165 ncbi Bartonella quintana Toulouse0
BPSE320373 ncbi Burkholderia pseudomallei 6681
BPSE320372 ncbi Burkholderia pseudomallei 1710b1
BPSE272560 ncbi Burkholderia pseudomallei K962430
BPET94624 Bordetella petrii1
BPER257313 ncbi Bordetella pertussis Tohama I0
BPAR257311 ncbi Bordetella parapertussis 128220
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23080
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M0
BMAL320389 ncbi Burkholderia mallei NCTC 102471
BMAL320388 ncbi Burkholderia mallei SAVP11
BMAL243160 ncbi Burkholderia mallei ATCC 233441
BLON206672 ncbi Bifidobacterium longum NCC27051
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1100
BHER314723 ncbi Borrelia hermsii DAH1
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi1
BCIC186490 Candidatus Baumannia cicadellinicola1
BCEN331272 ncbi Burkholderia cenocepacia HI24241
BCEN331271 ncbi Burkholderia cenocepacia AU 10541
BCAN483179 ncbi Brucella canis ATCC 233650
BBUR224326 ncbi Borrelia burgdorferi B311
BBRO257310 ncbi Bordetella bronchiseptica RB500
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)1
BAMB398577 ncbi Burkholderia ambifaria MC40-61
BAMB339670 ncbi Burkholderia ambifaria AMMD1
BAFZ390236 ncbi Borrelia afzelii PKo1
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9410
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62977 ncbi Acinetobacter sp. ADP11
ASP62928 ncbi Azoarcus sp. BH721
ASP232721 ncbi Acidovorax sp. JS420
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4491
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL031
APLE416269 ncbi Actinobacillus pleuropneumoniae L201
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG11
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232701
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACRY349163 ncbi Acidiphilium cryptum JF-50
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
ACAU438753 ncbi Azorhizobium caulinodans ORS 5710
ABUT367737 ncbi Arcobacter butzleri RM40181
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAU360910 ncbi Bordetella avium 197N0
AAVE397945 ncbi Acidovorax citrulli AAC00-11


Names of the homologs of the genes in the group in each of these orgs
  G6960   EG12768   EG12419   EG10282   
ZMOB264203
YENT393305 YE3413
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
XAUT78245
WPIP955
WPIP80849
VPAR223926 VP2599
VEIS391735
VCHO345073 VC0395_A0031
VCHO VC0478
TWHI218496
TWHI203267
TVOL273116
TTUR377629 TERTU_0959
TROS309801
TPEN368408
TKOD69014
TFUS269800 TFU_3010
TERY203124
TELO197221
TDEN326298 TMDEN_0509
TDEN292415 TBD_0163
TDEN243275
TCRU317025
TACI273075
STRO369723 STROP_0130
STOK273063
SSUI391295
SSP94122
SSP84588
SSP64471
SSP644076
SSP387093 SUN_1802
SSP321332
SSP321327
SSP292414
SSP1148
SSP1131
SSOL273057
SSED425104
SRUB309807
SPEA398579
SONE211586
SMEL266834
SMED366394
SMAR399550
SLOI323850
SLAC55218 SL1157_0906
SHAL458817
SGLO343509 SG2014
SFUM335543 SFUM_1469
SELO269084
SDEN318161
SDEG203122 SDE_1277
SBAL402882
SBAL399599
SARE391037 SARE_0135
SALA317655
SACI56780 SYN_02954
SACI330779
RXYL266117
RTYP257363
RSPH349102
RSPH349101
RSPH272943
RSP357808
RSP101510 RHA1_RO05536
RSOL267608 RSC0573
RSAL288705 RSAL33209_3394
RRUB269796
RRIC452659
RRIC392021
RPRO272947
RPOM246200
RPAL316058
RPAL316057
RPAL316056
RPAL316055
RPAL258594
RMAS416276
RLEG216596
RFER338969
RFEL315456
REUT381666 H16_A0568
REUT264198 REUT_A0557
RETL347834
RDEN375451
RCON272944
RCAS383372
RCAN293613
RBEL391896
RBEL336407
RAKA293614
PTOR263820
PSYR223283 PSPTO_0390
PSYR205918 PSYR_4787
PSTU379731 PST_3916
PSP56811
PSP312153 PNUC_1815
PSP296591
PSP117 RB6690
PPUT76869
PPUT351746
PPUT160488
PNAP365044
PMEN399739 PMEN_0462
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PISL384616
PING357804 PING_0372
PHOR70601
PHAL326442 PSHAA1743
PGIN242619
PFUR186497
PFLU220664
PFLU216595
PFLU205922
PENT384676
PCRY335284
PATL342610
PARS340102
PARC259536
PAER208964 PA0555
PAER208963 PA14_07230
PAER178306
PACN267747 PPA2011
PABY272844
OTSU357244
OCAR504832
OANT439375
NWIN323098
NSP387092 NIS_0562
NSP35761 NOCA_4350
NSP103690
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NMEN374833 NMCC_0352
NMEN272831 NMC0350
NMEN122587 NMA0587
NMEN122586 NMB_1869
NHAM323097
NGON242231 NGO0034
NFAR247156 NFA53820
NEUT335283
NEUR228410
NARO279238
MXAN246197
MVAN350058 MVAN_0670
MTUB419947 MRA_0372
MTUB336982 TBFG_10368
MTHE349307
MTHE187420
MTBRV RV0363C
MTBCDC MT0379
MSUC221988 MS0244
MSTA339860
MSP409
MSP400668
MSP266779
MSP189918 MKMS_0514
MSP164757 MJLS_0492
MSP164756 MMCS_0503
MSED399549
MPET420662
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407
MMAR267377
MMAG342108
MLOT266835
MLEP272631 ML0286
MLAB410358
MKAN190192
MJAN243232
MHUN323259
MGIL350054 MFLV_0234
MFLA265072
MEXT419610
MCAP243233
MBUR259564
MBOV410289 BCG_0401C
MBOV233413 MB0370C
MBAR269797
MAVI243243
MART243272
MAQU351348 MAQU_3037
MAER449447
MAEO419665
MACE188937
MABS561007 MAB_4254C
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LMES203120
LINT267671
LINT189518
LCHO395495 LCHO_0361
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
JSP375286 MMA_2846
JSP290400 JANN_1417
ILOI283942
IHOS453591
HWAL362976 HQ2710A
HSP64091
HSOM205914 HS_0206
HSAL478009
HNEP81032
HMUK485914
HMAR272569
HINF71421 HI_0524
HINF374930 CGSHIEE_00370
HINF281310 NTHI0650
HHAL349124
HDUC233412 HD_0864
HCHE349521 HCH_01538
HBUT415426
HAUR316274
HARS204773 HEAR2609
GURA351605
GSUL243231
GOXY290633 GOX0780
GMET269799
GFOR411154 GFO_0384
GBET391165
FTUL458234 FTA_1212
FTUL418136 FTW_0526
FTUL393115 FTF1365C
FTUL393011 FTH_1124
FTUL351581 FTL_1149
FSP1855 FRANEAN1_0217
FSP106370 FRANCCI3_4364
FRANT FBAB
FNUC190304
FJOH376686 FJOH_1463
FALN326424 FRAAL6655
ERUM302409
ERUM254945
ELIT314225
ECHA205920
ECAN269484
DSP255470
DSP216389
DSHI398580
DPSY177439
DOLE96561
DNOD246195 DNO_0166
DETH243164
DARO159087
CVIO243365 CV_0187
CVES412965
CTRA471473
CTRA471472
CSUL444179
CSP78
CSP501479
CSAL290398 CSAL_0370
CRUT413404
CPSY167879
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPEL335992
CMUR243161
CMIC443906 CMM_2226
CMIC31964 CMS2413
CMET456442
CMAQ397948
CKOR374847
CJEJ407148 C8J_0559
CJEJ360109 JJD26997_1072
CJEJ354242 CJJ81176_0625
CJEJ195099 CJE_0700
CJEJ192222 CJ0597
CJEI306537 JK0216
CJAP155077 CJA_0184
CHUT269798 CHU_3060
CHOM360107 CHAB381_1220
CGLU196627 CG3068
CFET360106 CFF8240_0515
CFEL264202
CEFF196164 CE2601
CDIP257309 DIP2094
CCUR360105 CCV52592_0113
CCON360104 CCC13826_2070
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBLO291272 BPEN_262
CBLO203907 BFL255
CAULO
CABO218497
BXEN266265
BVIE269482
BTUR314724 BT0445
BTRI382640
BTHA271848
BSUI470137
BSUI204722
BSP376
BSP36773 BCEP18194_A5957
BSP107806 BU451
BQUI283165
BPSE320373 BURPS668_0836
BPSE320372 BURPS1710B_A1052
BPSE272560
BPET94624 BPET3600
BPER257313
BPAR257311
BOVI236
BMEL359391
BMEL224914
BMAL320389 BMA10247_0040
BMAL320388 BMASAVP1_A0594
BMAL243160 BMA_0299
BLON206672 BL0550
BJAP224911
BHER314723 BH0445
BHEN283166
BGAR290434 BG0453
BCIC186490 BCI_0646
BCEN331272 BCEN2424_2626
BCEN331271 BCEN_2015
BCAN483179
BBUR224326 BB_0445
BBRO257310
BBAC360095
BBAC264462
BAPH372461 BCC_279
BAPH198804 BUSG436
BAMB398577 BAMMC406_2546
BAMB339670 BAMB_2673
BAFZ390236 BAPKO_0467
BABO262698
AVAR240292
AURANTIMONAS
ASP76114
ASP62977 ACIAD1925
ASP62928 AZO2843
ASP232721
ASAL382245 ASA_3504
APLE434271 APJL_1261
APLE416269 APL_1250
APHA212042
APER272557
ANAE240017 ANA_2608
AMAR329726
AMAR234826
AFUL224325
AFER243159 AFE_1409
AEHR187272
ADEH290397
ACRY349163
ACEL351607 ACEL_2125
ACAU438753
ABUT367737 ABU_0377
ABOR393595
ABAU360910
AAVE397945 AAVE_4576


Organism features enriched in list (features available for 365 out of the 389 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 3.243e-112992
Arrangment:Clusters 1.119e-6117
Arrangment:Pairs 8.581e-1140112
Disease:Pneumonia 0.0001302112
Endospores:Yes 8.389e-15753
GC_Content_Range4:0-40 2.314e-1098213
GC_Content_Range4:60-100 7.088e-16129145
GC_Content_Range7:0-30 0.00415822147
GC_Content_Range7:30-40 2.131e-777166
GC_Content_Range7:60-70 6.365e-17122134
Genome_Size_Range5:4-6 0.0059923103184
Genome_Size_Range5:6-10 0.00031254047
Genome_Size_Range9:6-8 0.00011993438
Gram_Stain:Gram_Neg 2.536e-8240333
Gram_Stain:Gram_Pos 1.251e-2639150
Habitat:Aquatic 1.181e-77891
Motility:No 0.009495684151
Optimal_temp.:- 0.0000883182257
Optimal_temp.:25-30 0.00011421919
Optimal_temp.:37 1.648e-645106
Oxygen_Req:Aerobic 2.574e-13154185
Oxygen_Req:Facultative 3.652e-2272201
Pathogenic_in:Human 5.923e-7106213
Pathogenic_in:No 0.0005975159226
Salinity:Non-halophilic 0.000064549106
Shape:Coccobacillus 0.00547031111
Shape:Coccus 5.558e-73182
Shape:Irregular_coccus 0.00030241717
Shape:Sphere 0.0009984519
Temp._range:Mesophilic 0.0003010281473



Back to top


ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 13
Effective number of orgs (counting one per cluster within 468 clusters): 10

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 27815 0.0000117644
UURE95667 Ureaplasma urealyticum serovar 13 0.0000125654
MGEN243273 ncbi Mycoplasma genitalium G37 0.0000150684
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB 0.0000322824
PAST100379 Onion yellows phytoplasma 0.0000493914
MPNE272634 ncbi Mycoplasma pneumoniae M129 0.0000562944
MHYO295358 ncbi Mycoplasma hyopneumoniae 232 0.00007531014
MHYO262719 ncbi Mycoplasma hyopneumoniae J 0.00008151034
MHYO262722 ncbi Mycoplasma hyopneumoniae 7448 0.00008481044
MSYN262723 ncbi Mycoplasma synoviae 53 0.00009161064
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP 0.00020941304
MPEN272633 ncbi Mycoplasma penetrans HF-2 0.00046071584
UURE95664 Ureaplasma urealyticum serovar 10 0.0059997773


Names of the homologs of the genes in the group in each of these orgs
  G6960   EG12768   EG12419   EG10282   
UPAR505682 UPA3_0636UPA3_0636UPA3_0636UPA3_0636
UURE95667 UU596UU596UU596UU596
MGEN243273 MG_023MG_023MG_023MG_023
AYEL322098 AYWB_547AYWB_547AYWB_547AYWB_547
PAST100379 PAM172PAM172PAM172PAM172
MPNE272634 MPN025MPN025MPN025MPN025
MHYO295358 MHP014MHP014MHP014MHP014
MHYO262719 MHJ_0014MHJ_0014MHJ_0014MHJ_0014
MHYO262722 MHP7448_0014MHP7448_0014MHP7448_0014MHP7448_0014
MSYN262723 MS53_0354MS53_0354MS53_0354MS53_0354
MPUL272635 MYPU_1100MYPU_1100MYPU_1100MYPU_1100
MPEN272633 MYPE10340MYPE10340MYPE10340MYPE10340
UURE95664 UUR10_0701UUR10_0701UUR10_0701


Organism features enriched in list (features available for 10 out of the 13 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Singles 0.00797739286
Disease:Enzootic_pneumonia 0.000265222
Disease:Urogenital_or_respiratory_tract_infections 0.000265222
Endospores:No 0.00508268211
GC_Content_Range4:0-40 0.000037010213
GC_Content_Range7:0-30 3.898e-8847
Genome_Size_Range5:0-2 1.418e-610155
Genome_Size_Range9:0-1 2.253e-12927
Habitat:Host-associated 0.000026310206
Optimal_temp.:37 0.00002968106
Oxygen_Req:Facultative 0.00040649201
Pathogenic_in:Swine 0.000035635
Salinity:Non-halophilic 0.00002968106
Shape:Sphere 7.986e-171019



Back to top


ORGANISMS DEPLETED FOR GROUP:




Back to top


PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY-5497 (purine nucleotides degradation IV (anaerobic))1221150.5929
P122-PWY (heterolactic fermentation)1191110.5739
PWY-5493 (reductive monocarboxylic acid cycle)2431680.5433
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))1211060.5220
PWY0-1296 (purine ribonucleosides degradation)3161930.5194
TEICHOICACID-PWY (teichoic acid (poly-glycerol) biosynthesis)98920.5157
PWY0-1295 (pyrimidine ribonucleosides degradation I)2391610.5070
PWY0-1314 (fructose degradation)2241540.5031
PWY-5480 (pyruvate fermentation to ethanol I)109940.4765
LACTOSECAT-PWY (lactose and galactose degradation I)71680.4422
MANNIDEG-PWY (mannitol degradation I)99840.4373
GLCMANNANAUT-PWY (superpathway of N-acetylglucosamine, N-acetylmannosamine and N-acetylneuraminate degradation)1341020.4316
PWY0-522 (lipoate salvage and modification)2201420.4315
PWY0-1324 (N-acetylneuraminate and N-acetylmannosamine degradation)1351010.4194
SUCUTIL-PWY (sucrose degradation I)124950.4162
RHAMCAT-PWY (rhamnose degradation)91760.4046
METHIONINE-DEG1-PWY (methionine degradation I (to homocysteine))31541-.4922



Back to top


PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG12768   EG12419   EG10282   
G69600.9998890.9998680.99957
EG127680.9999090.999657
EG124190.99963
EG10282



Back to top


PAIRWISE BLAST SCORES:

  G6960   EG12768   EG12419   EG10282   
G69600.0f01.2e-408.2e-40-
EG127681.2e-400.0f01.1e-81-
EG124198.2e-401.1e-810.0f0-
EG10282-1.1e-109.6e-140.0f0



Back to top


PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- GALACTITOLCAT-PWY (galactitol degradation) (degree of match pw to cand: 0.333, degree of match cand to pw: 0.500, average score: 0.864)
  Genes in pathway or complex:
             0.9107 0.8813 EG10700 (pfkB) 6PFK-2-MONOMER (6-phosphofructokinase-2 monomer)
             0.9862 0.9607 G7631 (kbaZ) G7631-MONOMER (KbaZ)
   *in cand* 0.9999 0.9997 EG12768 (kbaY) TAGAALDOL1-MONOMER (KbaY)
             0.9813 0.9375 G7128 (gatZ) G7128-MONOMER (GatZ)
   *in cand* 0.9999 0.9996 EG12419 (gatY) TAGAALDOL2-MONOMER (GatY)
             0.9109 0.8197 EG12417 (gatD) GALACTITOLPDEHYD-MONOMER (galactitol-1-phosphate dehydrogenase)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9996 EG10282 (fbaA) FRUCTBISALD-CLASSII-MONOMER (fructose bisphosphate aldolase monomer)
   *in cand* 0.9998 0.9996 G6960 (ydjI) G6960-MONOMER (predicted aldolase)



Back to top


GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G6960 (centered at G6960)
EG12768 (centered at EG12768)
EG12419 (centered at EG12419)
EG10282 (centered at EG10282)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6960   EG12768   EG12419   EG10282   
234/623236/623237/623280/623
AAEO224324:0:Tyes0000
AAUR290340:2:Tyes8988988980
AAVE397945:0:Tyes---0
ABAC204669:0:Tyes000-
ABUT367737:0:Tyes---0
ACEL351607:0:Tyes---0
AFER243159:0:Tyes0---
AHYD196024:0:Tyes2323230
ALAI441768:0:Tyes0000
AMET293826:0:Tyes000-
ANAE240017:0:Tyes---0
AORE350688:0:Tyes0000
APLE416269:0:Tyes---0
APLE434271:0:Tno---0
ASAL382245:5:Tyes---0
ASP1667:3:Tyes1220122012200
ASP62928:0:Tyes---0
ASP62977:0:Tyes---0
AYEL322098:4:Tyes0000
BAFZ390236:2:Fyes---0
BAMB339670:3:Tno--0-
BAMB398577:3:Tno--0-
BAMY326423:0:Tyes000-
BANT260799:0:Tno000-
BANT261594:2:Tno000-
BANT568206:2:Tyes000-
BANT592021:2:Tno000-
BAPH198804:0:Tyes---0
BAPH372461:0:Tyes---0
BBUR224326:21:Fno---0
BCEN331271:2:Tno--0-
BCEN331272:3:Tyes--0-
BCER226900:1:Tyes000-
BCER288681:0:Tno339700-
BCER315749:1:Tyes000-
BCER405917:1:Tyes337400-
BCER572264:1:Tno000-
BCIC186490:0:Tyes---0
BCLA66692:0:Tyes0279031620
BFRA272559:1:Tyes000-
BFRA295405:0:Tno000-
BGAR290434:2:Fyes---0
BHAL272558:0:Tyes0000
BHER314723:0:Fyes---0
BLIC279010:0:Tyes394000
BLON206672:0:Tyes---0
BMAL243160:1:Tno--0-
BMAL320388:1:Tno--0-
BMAL320389:1:Tyes--0-
BPET94624:0:Tyes-0--
BPSE320372:1:Tno--0-
BPSE320373:1:Tno--0-
BPUM315750:0:Tyes1600000
BSP107806:2:Tyes---0
BSP36773:2:Tyes--0-
BSUB:0:Tyes000-
BTHE226186:0:Tyes000-
BTHU281309:1:Tno000-
BTHU412694:1:Tno000-
BTUR314724:0:Fyes---0
BWEI315730:4:Tyes000-
CACE272562:1:Tyes0000
CBEI290402:0:Tyes2588000
CBLO203907:0:Tyes---0
CBLO291272:0:Tno---0
CBOT36826:1:Tno0000
CBOT441770:0:Tyes0000
CBOT441771:0:Tno0000
CBOT441772:1:Tno0000
CBOT498213:1:Tno0000
CBOT508765:1:Tyes0180918091809
CBOT515621:2:Tyes0000
CBOT536232:0:Tno0000
CCHL340177:0:Tyes0000
CCON360104:2:Tyes---0
CCUR360105:0:Tyes---0
CDES477974:0:Tyes0000
CDIF272563:1:Tyes00062
CDIP257309:0:Tyes---0
CEFF196164:0:Fyes---0
CFET360106:0:Tyes---0
CGLU196627:0:Tyes---0
CHOM360107:1:Tyes---0
CHUT269798:0:Tyes---0
CHYD246194:0:Tyes0000
CJAP155077:0:Tyes---0
CJEI306537:0:Tyes---0
CJEJ192222:0:Tyes---0
CJEJ195099:0:Tno---0
CJEJ354242:2:Tyes---0
CJEJ360109:0:Tyes---0
CJEJ407148:0:Tno---0
CKLU431943:1:Tyes000-
CMIC31964:2:Tyes---0
CMIC443906:2:Tyes---0
CNOV386415:0:Tyes0000
CPER195102:1:Tyes1357135713570
CPER195103:0:Tno1316131613160
CPER289380:3:Tyes1214121412140
CPHY357809:0:Tyes0000
CSAL290398:0:Tyes---0
CTEP194439:0:Tyes0000
CTET212717:0:Tyes14900-
CVIO243365:0:Tyes---0
DDES207559:0:Tyes0000
DGEO319795:1:Tyes0000
DHAF138119:0:Tyes0000
DNOD246195:0:Tyes---0
DRAD243230:3:Tyes0000
DRED349161:0:Tyes0000
DVUL882:1:Tyes0000
ECAR218491:0:Tyes0013612
ECOL199310:0:Tno016904381307
ECOL316407:0:Tno013483231144
ECOL331111:6:Tno015543771198
ECOL362663:0:Tno015154171200
ECOL364106:1:Tno015964001336
ECOL405955:2:Tyes015263701237
ECOL409438:6:Tyes015114301275
ECOL413997:0:Tno012812861034
ECOL439855:4:Tno433239402042
ECOL469008:0:Tno12760971210
ECOL481805:0:Tno13050999221
ECOL585034:0:Tno014373401194
ECOL585035:0:Tno016443951335
ECOL585055:0:Tno015884031249
ECOL585056:2:Tno015593741223
ECOL585057:0:Tno367271802427
ECOL585397:0:Tno0178919051390
ECOL83334:0:Tno015764291352
ECOLI:0:Tno013893341180
ECOO157:0:Tno015444021323
EFAE226185:3:Tyes0000
EFER585054:1:Tyes1464146414640
ESP42895:1:Tyes0332533253087
FALN326424:0:Tyes---0
FJOH376686:0:Tyes---0
FMAG334413:1:Tyes000-
FNOD381764:0:Tyes000-
FPHI484022:1:Tyes-0-0
FRANT:0:Tno---0
FSP106370:0:Tyes---0
FSP1855:0:Tyes---0
FSUC59374:0:Tyes000-
FTUL351581:0:Tno---0
FTUL393011:0:Tno---0
FTUL393115:0:Tyes---0
FTUL401614:0:Tyes-0-0
FTUL418136:0:Tno---0
FTUL458234:0:Tno---0
GFOR411154:0:Tyes---0
GKAU235909:1:Tyes1525152500
GOXY290633:5:Tyes---0
GTHE420246:1:Tyes1505000
GVIO251221:0:Tyes000-
HACI382638:1:Tyes000-
HARS204773:0:Tyes--0-
HCHE349521:0:Tyes---0
HDUC233412:0:Tyes---0
HHEP235279:0:Tyes000-
HINF281310:0:Tyes---0
HINF374930:0:Tyes---0
HINF71421:0:Tno---0
HMOD498761:0:Tyes0000
HPY:0:Tno000-
HPYL357544:1:Tyes000-
HPYL85963:0:Tno000-
HSOM205914:1:Tyes---0
HSOM228400:0:Tno7567567560
HWAL362976:1:Tyes---0
JSP290400:1:Tyes0---
JSP375286:0:Tyes--0-
KPNE272620:2:Tyes1910191019100
KRAD266940:2:Fyes0002569
LACI272621:0:Tyes00--
LCAS321967:1:Tyes230300-
LCHO395495:0:Tyes--0-
LDEL321956:0:Tyes00--
LDEL390333:0:Tyes00--
LGAS324831:0:Tyes00-0
LHEL405566:0:Tyes00--
LINN272626:1:Tno2367236718880
LINT363253:3:Tyes0000
LJOH257314:0:Tyes00-0
LLAC272622:5:Tyes00-0
LLAC272623:0:Tyes00-0
LMON169963:0:Tno2251225118090
LMON265669:0:Tyes1772213000
LPLA220668:0:Tyes0000
LREU557436:0:Tyes0000
LSAK314315:0:Tyes0000
LSPH444177:1:Tyes0270270270
LWEL386043:0:Tyes2190219018360
LXYL281090:0:Tyes2162162160
MABS561007:1:Tyes---0
MAQU351348:2:Tyes---0
MBOV233413:0:Tno---0
MBOV410289:0:Tno---0
MCAP340047:0:Tyes000-
MFLO265311:0:Tyes000-
MGEN243273:0:Tyes0000
MGIL350054:3:Tyes---0
MHYO262719:0:Tyes0000
MHYO262722:0:Tno0000
MHYO295358:0:Tno0000
MLEP272631:0:Tyes---0
MMOB267748:0:Tyes000-
MMYC272632:0:Tyes000-
MPEN272633:0:Tyes0000
MPNE272634:0:Tyes0000
MPUL272635:0:Tyes0000
MSME246196:0:Tyes6196196190
MSP164756:1:Tno---0
MSP164757:0:Tno---0
MSP189918:2:Tyes---0
MSUC221988:0:Tyes---0
MSYN262723:0:Tyes0000
MTBCDC:0:Tno---0
MTBRV:0:Tno---0
MTHE264732:0:Tyes0000
MTUB336982:0:Tno---0
MTUB419947:0:Tyes---0
MVAN350058:0:Tyes---0
NFAR247156:2:Tyes---0
NGON242231:0:Tyes---0
NMEN122586:0:Tno---0
NMEN122587:0:Tyes---0
NMEN272831:0:Tno---0
NMEN374833:0:Tno---0
NSP35761:1:Tyes---0
NSP387092:0:Tyes---0
OIHE221109:0:Tyes0000
PACN267747:0:Tyes---0
PAER208963:0:Tyes---0
PAER208964:0:Tno---0
PAST100379:0:Tyes0000
PCAR338963:0:Tyes0000
PDIS435591:0:Tyes000-
PHAL326442:1:Tyes---0
PING357804:0:Tyes---0
PINT246198:1:Tyes000-
PLUM243265:0:Fyes000119
PLUT319225:0:Tyes0000
PMEN399739:0:Tyes---0
PMOB403833:0:Tyes0000
PMUL272843:1:Tyes000488
PPEN278197:0:Tyes000-
PPRO298386:1:Tyes000-
PPRO298386:2:Tyes---0
PRUM264731:0:Tyes000-
PSP117:0:Tyes---0
PSP312153:0:Tyes-0--
PSTU379731:0:Tyes---0
PSYR205918:0:Tyes---0
PSYR223283:2:Tyes---0
PTHE370438:0:Tyes000-
RALB246199:0:Tyes0000
REUT264198:3:Tyes---0
REUT381666:2:Tyes---0
RMET266264:2:Tyes9869869860
RSAL288705:0:Tyes---0
RSOL267608:1:Tyes---0
RSP101510:3:Fyes---0
SACI56780:0:Tyes---0
SAGA205921:0:Tno0000
SAGA208435:0:Tno0000
SAGA211110:0:Tyes0000
SARE391037:0:Tyes---0
SAUR158878:1:Tno000-
SAUR158879:1:Tno000-
SAUR196620:0:Tno000-
SAUR273036:0:Tno000-
SAUR282458:0:Tno000-
SAUR282459:0:Tno000-
SAUR359786:1:Tno000-
SAUR359787:1:Tno000-
SAUR367830:3:Tno000-
SAUR418127:0:Tyes000-
SAUR426430:0:Tno000-
SAUR93061:0:Fno000-
SAUR93062:1:Tno000-
SAVE227882:1:Fyes0003122
SBOY300268:1:Tyes0220102028
SCO:2:Fyes2232223222320
SDEG203122:0:Tyes---0
SDYS300267:1:Tyes173000838
SENT209261:0:Tno1761761760
SENT220341:0:Tno1741741740
SENT295319:0:Tno1781781780
SENT321314:2:Tno0191619161727
SENT454169:2:Tno2412412410
SEPI176279:1:Tyes000-
SEPI176280:0:Tno000-
SERY405948:0:Tyes000862
SFLE198214:0:Tyes06636631390
SFLE373384:0:Tno06596591445
SFUM335543:0:Tyes---0
SGLO343509:3:Tyes---0
SGOR29390:0:Tyes0000
SHAE279808:0:Tyes000-
SHIGELLA:0:Tno05925921316
SLAC55218:1:Fyes0---
SMUT210007:0:Tyes0000
SPNE1313:0:Tyes0000
SPNE170187:0:Tyes0000
SPNE171101:0:Tno0000
SPNE487213:0:Tno0000
SPNE487214:0:Tno0000
SPNE488221:0:Tno0000
SPRO399741:1:Tyes0156615662951
SPYO160490:0:Tno0000
SPYO186103:0:Tno0000
SPYO193567:0:Tno0000
SPYO198466:0:Tno0000
SPYO286636:0:Tno0000
SPYO293653:0:Tno0000
SPYO319701:0:Tyes0000
SPYO370551:0:Tno0000
SPYO370552:0:Tno0000
SPYO370553:0:Tno0000
SPYO370554:0:Tyes0000
SSAP342451:2:Tyes0000
SSON300269:1:Tyes000890
SSP387093:0:Tyes---0
SSUI391296:0:Tyes0000
STHE264199:0:Tyes0000
STHE292459:0:Tyes0000
STHE299768:0:Tno0000
STHE322159:2:Tyes0000
STRO369723:0:Tyes---0
STYP99287:1:Tyes1851851850
SWOL335541:0:Tyes0000
TDEN292415:0:Tyes---0
TDEN326298:0:Tyes---0
TFUS269800:0:Tyes---0
TLET416591:0:Tyes000-
TMAR243274:0:Tyes000-
TPAL243276:0:Tyes000-
TPET390874:0:Tno000-
TPSE340099:0:Tyes0000
TSP1755:0:Tyes0000
TSP28240:0:Tyes000-
TTEN273068:0:Tyes0000
TTHE262724:1:Tyes0000
TTHE300852:2:Tyes0000
TTUR377629:0:Tyes---0
UMET351160:0:Tyes000-
UPAR505682:0:Tyes0000
UURE95664:0:Tyes-000
UURE95667:0:Tno0000
VCHO:0:Tyes---0
VCHO345073:1:Tno---0
VFIS312309:1:Tyes000-
VFIS312309:2:Tyes---0
VPAR223926:1:Tyes---0
VVUL196600:1:Tyes000-
VVUL196600:2:Tyes---0
VVUL216895:0:Tno000-
VVUL216895:1:Tno---0
WSUC273121:0:Tyes000-
YENT393305:1:Tyes---0
YPES187410:5:Tno6460080
YPES214092:3:Tno30200074
YPES349746:2:Tno000439
YPES360102:3:Tyes350184840
YPES377628:2:Tno5730075
YPES386656:2:Tno273875750
YPSE273123:2:Tno70200104
YPSE349747:2:Tno314379790



Back to top