CANDIDATE ID: 392

CANDIDATE ID: 392

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9965967e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    5.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages




GENE LIST:

- EG10622 (murF) (b0086)
   Products of gene:
     - UDP-NACMURALGLDAPAALIG-MONOMER (D-alanyl-D-alanine-adding enzyme)
       Reactions:
        D-alanyl-D-alanine + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelate + ATP  ->  UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine + phosphate + ADP + 2 H+
         In pathways
         PWY-6385 (PWY-6385)
         PEPTIDOGLYCANSYN-PWY (peptidoglycan biosynthesis I (meso-diaminopimelate containing))
         PWY-6387 (UDP-N-acetylmuramoyl-pentapeptide biosynthesis III (meso-DAP-containing))

- EG10342 (ftsQ) (b0093)
   Products of gene:
     - EG10342-MONOMER (essential cell division protein FtsQ)

- EG10214 (ddlB) (b0092)
   Products of gene:
     - DALADALALIGB-MONOMER (ddlB)
     - DALADALALIGB-CPLX (D-alanine-D-alanine ligase B)
       Reactions:
        2 D-alanine + ATP  =  D-alanyl-D-alanine + phosphate + ADP + 2 H+
         In pathways
         PWY-6470 (PWY-6470)
         PWY-6471 (PWY-6471)
         PWY-5265 (PWY-5265)
         PWY-6385 (PWY-6385)
         PEPTIDOGLYCANSYN-PWY (peptidoglycan biosynthesis I (meso-diaminopimelate containing))
         PWY-6386 (PWY-6386)
         PWY-6387 (UDP-N-acetylmuramoyl-pentapeptide biosynthesis III (meso-DAP-containing))

- EG10213 (ddlA) (b0381)
   Products of gene:
     - DALADALALIGA-MONOMER (D-alanine-D-alanine ligase A)
       Reactions:
        2 D-alanine + ATP  =  D-alanyl-D-alanine + phosphate + ADP + 2 H+
         In pathways
         PWY-6470 (PWY-6470)
         PWY-6471 (PWY-6471)
         PWY-5265 (PWY-5265)
         PWY-6385 (PWY-6385)
         PEPTIDOGLYCANSYN-PWY (peptidoglycan biosynthesis I (meso-diaminopimelate containing))
         PWY-6386 (PWY-6386)
         PWY-6387 (UDP-N-acetylmuramoyl-pentapeptide biosynthesis III (meso-DAP-containing))



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 314
Effective number of orgs (counting one per cluster within 468 clusters): 211

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A4
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110184
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103313
XFAS405440 ncbi Xylella fastidiosa M123
XFAS183190 ncbi Xylella fastidiosa Temecula13
XFAS160492 ncbi Xylella fastidiosa 9a5c3
XCAM487884 Xanthomonas campestris pv. paulliniae4
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-104
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80044
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339134
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3064
XAUT78245 ncbi Xanthobacter autotrophicus Py23
VEIS391735 ncbi Verminephrobacter eiseniae EF01-23
VCHO345073 ncbi Vibrio cholerae O3953
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169613
TTUR377629 ncbi Teredinibacter turnerae T79013
TSP1755 Thermoanaerobacter sp.3
TROS309801 ncbi Thermomicrobium roseum DSM 51593
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332233
TELO197221 ncbi Thermosynechococcus elongatus BP-13
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252593
TCRU317025 ncbi Thiomicrospira crunogena XCL-23
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen3
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
STRO369723 ncbi Salinispora tropica CNB-4403
SSP94122 ncbi Shewanella sp. ANA-33
SSP64471 ncbi Synechococcus sp. CC93113
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)3
SSON300269 ncbi Shigella sonnei Ss0464
SSED425104 ncbi Shewanella sediminis HAW-EB33
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153053
SPRO399741 ncbi Serratia proteamaculans 5684
SPEA398579 ncbi Shewanella pealeana ATCC 7003453
SONE211586 ncbi Shewanella oneidensis MR-13
SMEL266834 ncbi Sinorhizobium meliloti 10213
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB43
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14353
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB3
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23383
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122283
SEPI176279 ncbi Staphylococcus epidermidis RP62A3
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SELO269084 ncbi Synechococcus elongatus PCC 63013
SDYS300267 ncbi Shigella dysenteriae Sd1974
SDEN318161 ncbi Shewanella denitrificans OS2173
SDEG203122 ncbi Saccharophagus degradans 2-403
SCO ncbi Streptomyces coelicolor A3(2)3
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1853
SBAL399599 ncbi Shewanella baltica OS1953
SAVE227882 ncbi Streptomyces avermitilis MA-46803
SAUR93062 ncbi Staphylococcus aureus aureus COL3
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83253
SAUR426430 ncbi Staphylococcus aureus aureus Newman3
SAUR418127 ncbi Staphylococcus aureus aureus Mu33
SAUR367830 Staphylococcus aureus aureus USA3003
SAUR359787 ncbi Staphylococcus aureus aureus JH13
SAUR359786 ncbi Staphylococcus aureus aureus JH93
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4763
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2523
SAUR273036 ncbi Staphylococcus aureus RF1223
SAUR196620 ncbi Staphylococcus aureus aureus MW23
SAUR158879 ncbi Staphylococcus aureus aureus N3153
SAUR158878 ncbi Staphylococcus aureus aureus Mu503
SARE391037 ncbi Salinispora arenicola CNS-2053
SACI56780 ncbi Syntrophus aciditrophicus SB3
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99413
RSP357808 ncbi Roseiflexus sp. RS-13
RSOL267608 ncbi Ralstonia solanacearum GMI10004
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111704
RMET266264 ncbi Ralstonia metallidurans CH344
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38413
RFER338969 ncbi Rhodoferax ferrireducens T1183
REUT381666 ncbi Ralstonia eutropha H164
REUT264198 ncbi Ralstonia eutropha JMP1344
RETL347834 ncbi Rhizobium etli CFN 423
RCAS383372 ncbi Roseiflexus castenholzii DSM 139413
PTHE370438 ncbi Pelotomaculum thermopropionicum SI3
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30004
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a4
PSTU379731 ncbi Pseudomonas stutzeri A15013
PSP56811 Psychrobacter sp.3
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-14
PSP296591 ncbi Polaromonas sp. JS6664
PPUT76869 ncbi Pseudomonas putida GB-13
PPUT351746 ncbi Pseudomonas putida F14
PPUT160488 ncbi Pseudomonas putida KT24404
PPRO298386 ncbi Photobacterium profundum SS94
PNAP365044 ncbi Polaromonas naphthalenivorans CJ24
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PMEN399739 ncbi Pseudomonas mendocina ymp4
PLUT319225 ncbi Chlorobium luteolum DSM 2733
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 374
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PFLU220664 ncbi Pseudomonas fluorescens Pf-54
PFLU216595 ncbi Pseudomonas fluorescens SBW254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-13
PENT384676 ncbi Pseudomonas entomophila L483
PCRY335284 ncbi Psychrobacter cryohalolentis K53
PCAR338963 ncbi Pelobacter carbinolicus DSM 23803
PATL342610 ncbi Pseudoalteromonas atlantica T6c3
PARC259536 ncbi Psychrobacter arcticus 273-43
PAER208964 ncbi Pseudomonas aeruginosa PAO13
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA143
PACN267747 ncbi Propionibacterium acnes KPA1712023
OIHE221109 ncbi Oceanobacillus iheyensis HTE8313
OANT439375 ncbi Ochrobactrum anthropi ATCC 491883
NSP35761 Nocardioides sp.3
NSP103690 ncbi Nostoc sp. PCC 71203
NOCE323261 ncbi Nitrosococcus oceani ATCC 197073
NMUL323848 ncbi Nitrosospira multiformis ATCC 251964
NMEN374833 ncbi Neisseria meningitidis 0534423
NMEN272831 ncbi Neisseria meningitidis FAM183
NMEN122587 ncbi Neisseria meningitidis Z24913
NMEN122586 ncbi Neisseria meningitidis MC583
NGON242231 ncbi Neisseria gonorrhoeae FA 10903
NEUT335283 ncbi Nitrosomonas eutropha C914
NEUR228410 ncbi Nitrosomonas europaea ATCC 197183
MXAN246197 ncbi Myxococcus xanthus DK 16223
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-13
MTHE264732 ncbi Moorella thermoacetica ATCC 390733
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSP400668 ncbi Marinomonas sp. MWYL13
MSP266779 ncbi Chelativorans sp. BNC13
MPET420662 ncbi Methylibium petroleiphilum PM13
MLOT266835 ncbi Mesorhizobium loti MAFF3030993
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK3
MFLA265072 ncbi Methylobacillus flagellatus KT4
MCAP243233 ncbi Methylococcus capsulatus Bath3
MAQU351348 ncbi Marinobacter aquaeolei VT84
LXYL281090 ncbi Leifsonia xyli xyli CTCB073
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53343
LSPH444177 ncbi Lysinibacillus sphaericus C3-413
LPNE400673 ncbi Legionella pneumophila Corby3
LPNE297246 ncbi Legionella pneumophila Paris3
LPNE297245 ncbi Legionella pneumophila Lens3
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 13
LMON265669 ncbi Listeria monocytogenes 4b F23653
LMON169963 ncbi Listeria monocytogenes EGD-e3
LINN272626 ncbi Listeria innocua Clip112623
LCHO395495 ncbi Leptothrix cholodnii SP-63
KRAD266940 ncbi Kineococcus radiotolerans SRS302163
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP375286 ncbi Janthinobacterium sp. Marseille4
ILOI283942 ncbi Idiomarina loihiensis L2TR3
HSOM228400 ncbi Haemophilus somnus 23364
HSOM205914 ncbi Haemophilus somnus 129PT4
HMOD498761 ncbi Heliobacterium modesticaldum Ice13
HINF71421 ncbi Haemophilus influenzae Rd KW204
HINF374930 ncbi Haemophilus influenzae PittEE4
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HHAL349124 ncbi Halorhodospira halophila SL13
HDUC233412 ncbi Haemophilus ducreyi 35000HP4
HCHE349521 ncbi Hahella chejuensis KCTC 23964
HARS204773 ncbi Herminiimonas arsenicoxydans4
GURA351605 ncbi Geobacter uraniireducens Rf43
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-23
GSUL243231 ncbi Geobacter sulfurreducens PCA3
GMET269799 ncbi Geobacter metallireducens GS-154
GKAU235909 ncbi Geobacillus kaustophilus HTA4263
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-003
FTUL418136 ncbi Francisella tularensis tularensis WY96-34183
FTUL401614 ncbi Francisella novicida U1123
FTUL393115 ncbi Francisella tularensis tularensis FSC1983
FTUL393011 ncbi Francisella tularensis holarctica OSU183
FTUL351581 Francisella tularensis holarctica FSC2003
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S853
FSP1855 Frankia sp. EAN1pec3
FSP106370 ncbi Frankia sp. CcI33
FRANT ncbi Francisella tularensis tularensis SCHU S43
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250173
FALN326424 ncbi Frankia alni ACN14a3
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
EFAE226185 ncbi Enterococcus faecalis V5833
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DRED349161 ncbi Desulfotomaculum reducens MI-13
DPSY177439 ncbi Desulfotalea psychrophila LSv543
DOLE96561 ncbi Desulfococcus oleovorans Hxd33
DNOD246195 ncbi Dichelobacter nodosus VCS1703A3
DHAF138119 ncbi Desulfitobacterium hafniense Y513
DARO159087 ncbi Dechloromonas aromatica RCB4
CVIO243365 ncbi Chromobacterium violaceum ATCC 124724
CTET212717 ncbi Clostridium tetani E883
CSAL290398 ncbi Chromohalobacter salexigens DSM 30433
CPSY167879 ncbi Colwellia psychrerythraea 34H4
CPER289380 ncbi Clostridium perfringens SM1013
CPER195103 ncbi Clostridium perfringens ATCC 131243
CPER195102 ncbi Clostridium perfringens 133
CNOV386415 ncbi Clostridium novyi NT3
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3823
CMIC31964 ncbi Clavibacter michiganensis sepedonicus3
CJAP155077 Cellvibrio japonicus3
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29013
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131293
CDIF272563 ncbi Clostridium difficile 6303
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C3
CCHL340177 ncbi Chlorobium chlorochromatii CaD33
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1113
CBUR360115 ncbi Coxiella burnetii RSA 3313
CBUR227377 ncbi Coxiella burnetii RSA 4933
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto3
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6573
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B3
CBOT498213 ncbi Clostridium botulinum B1 str. Okra3
CBOT441772 ncbi Clostridium botulinum F str. Langeland3
CBOT441771 ncbi Clostridium botulinum A str. Hall3
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193973
CBOT36826 Clostridium botulinum A3
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN3
CBLO203907 ncbi Candidatus Blochmannia floridanus3
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80523
CACE272562 ncbi Clostridium acetobutylicum ATCC 8243
BWEI315730 ncbi Bacillus weihenstephanensis KBAB43
BVIE269482 ncbi Burkholderia vietnamiensis G43
BTRI382640 ncbi Bartonella tribocorum CIP 1054763
BTHU412694 ncbi Bacillus thuringiensis Al Hakam3
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-273
BTHA271848 ncbi Burkholderia thailandensis E2643
BSUI470137 ncbi Brucella suis ATCC 234454
BSUI204722 ncbi Brucella suis 13304
BSUB ncbi Bacillus subtilis subtilis 1683
BSP36773 Burkholderia sp.3
BQUI283165 ncbi Bartonella quintana Toulouse3
BPUM315750 ncbi Bacillus pumilus SAFR-0323
BPSE320373 ncbi Burkholderia pseudomallei 6683
BPSE320372 ncbi Burkholderia pseudomallei 1710b3
BPSE272560 ncbi Burkholderia pseudomallei K962433
BPET94624 Bordetella petrii4
BPER257313 ncbi Bordetella pertussis Tohama I4
BPAR257311 ncbi Bordetella parapertussis 128224
BOVI236 Brucella ovis4
BMEL359391 ncbi Brucella melitensis biovar Abortus 23084
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M4
BMAL320389 ncbi Burkholderia mallei NCTC 102473
BMAL320388 ncbi Burkholderia mallei SAVP13
BMAL243160 ncbi Burkholderia mallei ATCC 233443
BLIC279010 ncbi Bacillus licheniformis ATCC 145803
BHEN283166 ncbi Bartonella henselae Houston-13
BHAL272558 ncbi Bacillus halodurans C-1253
BCLA66692 ncbi Bacillus clausii KSM-K163
BCIC186490 Candidatus Baumannia cicadellinicola3
BCER572264 ncbi Bacillus cereus 03BB1023
BCER405917 Bacillus cereus W3
BCER315749 ncbi Bacillus cytotoxicus NVH 391-983
BCER288681 ncbi Bacillus cereus E33L3
BCER226900 ncbi Bacillus cereus ATCC 145793
BCEN331272 ncbi Burkholderia cenocepacia HI24243
BCEN331271 ncbi Burkholderia cenocepacia AU 10543
BCAN483179 ncbi Brucella canis ATCC 233654
BBRO257310 ncbi Bordetella bronchiseptica RB504
BBAC360095 ncbi Bartonella bacilliformis KC5833
BANT592021 ncbi Bacillus anthracis A02483
BANT568206 ncbi Bacillus anthracis CDC 6843
BANT261594 ncbi Bacillus anthracis Ames Ancestor3
BANT260799 ncbi Bacillus anthracis Sterne3
BAMY326423 ncbi Bacillus amyloliquefaciens FZB423
BAMB398577 ncbi Burkholderia ambifaria MC40-63
BAMB339670 ncbi Burkholderia ambifaria AMMD3
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9414
ASP76114 ncbi Aromatoleum aromaticum EbN13
ASP62977 ncbi Acinetobacter sp. ADP13
ASP62928 ncbi Azoarcus sp. BH723
ASP232721 ncbi Acidovorax sp. JS423
ASP1667 Arthrobacter sp.3
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
AORE350688 ncbi Alkaliphilus oremlandii OhILAs3
AHYD196024 Aeromonas hydrophila dhakensis3
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232703
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-13
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C3
ACEL351607 ncbi Acidothermus cellulolyticus 11B3
ACAU438753 ncbi Azorhizobium caulinodans ORS 5713
ABOR393595 ncbi Alcanivorax borkumensis SK23
ABAU360910 ncbi Bordetella avium 197N4
AAVE397945 ncbi Acidovorax citrulli AAC00-13


Names of the homologs of the genes in the group in each of these orgs
  EG10622   EG10342   EG10214   EG10213   
YPSE349747 YPSIP31758_3391YPSIP31758_3384YPSIP31758_3385YPSIP31758_3385
YPSE273123 YPTB0684YPTB0691YPTB0690YPTB0690
YPES386656 YPDSF_3091YPDSF_3084YPDSF_3085YPDSF_3085
YPES377628 YPN_0417YPN_0424YPN_0423YPN_0423
YPES360102 YPA_3550YPA_3543YPA_3544YPA_3544
YPES349746 YPANGOLA_A2922YPANGOLA_A2915YPANGOLA_A2916YPANGOLA_A2916
YPES214092 YPO0551YPO0558YPO0557YPO0557
YPES187410 Y3630Y3623Y3624Y3624
YENT393305 YE0668YE0675YE0674YE3211
XORY360094 XOOORF_1076XOOORF_1082XOOORF_1081XOOORF_5035
XORY342109 XOO3607XOO3601XOO3602XOO0324
XORY291331 XOO3829XOO3824XOO0352
XFAS405440 XFASM12_2051XFASM12_2045XFASM12_2046
XFAS183190 PD_1869PD_1863PD_1864
XFAS160492 XF0794XF0800XF0799
XCAM487884 XCC-B100_3634XCC-B100_3628XCC-B100_3629XCC-B100_0244
XCAM316273 XCAORF_0888XCAORF_0895XCAORF_0893XCAORF_4301
XCAM314565 XC_3513XC_3507XC_3508XC_0232
XCAM190485 XCC0722XCC0728XCC0727XCC0222
XAXO190486 XAC0776XAC0782XAC0781XAC0781
XAUT78245 XAUT_1848XAUT_0326XAUT_0325
VEIS391735 VEIS_4566VEIS_4573VEIS_4572
VCHO345073 VC0395_A1983VC0395_A1977VC0395_0515
VCHO VC2405VC2399VCA0572
TTUR377629 TERTU_3053TERTU_3046TERTU_3047
TSP1755 TETH514_2013TETH514_0610TETH514_0610
TROS309801 TRD_0059TRD_0065TRD_0065
TPSE340099 TETH39_0809TETH39_0187TETH39_0187
TELO197221 TLR1553TLL0523TLL0523
TDEN292415 TBD_0115TBD_0123TBD_0122
TCRU317025 TCR_0564TCR_0586TCR_0585
SWOL335541 SWOL_0822SWOL_1155SWOL_1155
STYP99287 STM0124STM0131STM0130STM0380
STRO369723 STROP_3216STROP_4584STROP_1272
SSP94122 SHEWANA3_3747SHEWANA3_3741SHEWANA3_2307
SSP64471 GSYN1641GSYN0775GSYN0775
SSP321332 CYB_2039CYB_2109CYB_2109
SSON300269 SSO_0094SSO_0101SSO_0100SSO_0356
SSED425104 SSED_0406SSED_0412SSED_1920
SSAP342451 SSP0801SSP0800SSP0800
SPRO399741 SPRO_0757SPRO_0764SPRO_0763SPRO_1367
SPEA398579 SPEA_3815SPEA_3809SPEA_2422
SONE211586 SO_4223SO_4217SO_2217
SMEL266834 SMC01862SMC01872SMC01871
SHIGELLA MURFFTSQDDLBDDLA
SHAL458817 SHAL_0451SHAL_0457SHAL_1854
SHAE279808 SH0955SH0954SH0954
SGLO343509 SG0445SG0451SG0899SG0899
SFUM335543 SFUM_3467SFUM_4102SFUM_4102
SFLE373384 SFV_0079SFV_0086SFV_0085SFV_0344
SFLE198214 AAN41748.1AAN41755.1AAN41754.1AAN41894.1
SERY405948 SACE_5855SACE_6130SACE_6130
SEPI176280 SE_1680SE_1681SE_1681
SEPI176279 SERP1689SERP1690SERP1690
SENT454169 SEHA_C0136SEHA_C0143SEHA_C0142SEHA_C0476
SENT321314 SCH_0121SCH_0128SCH_0127SCH_0421
SENT295319 SPA0126SPA0133SPA0132SPA0132
SENT220341 STY0144STY0151STY0150STY0412
SENT209261 T0128T0135T0134T2484
SELO269084 SYC2253_DSYC1730_CSYC1730_C
SDYS300267 SDY_0116SDY_0123SDY_0122SDY_0365
SDEN318161 SDEN_0351SDEN_0357SDEN_2354
SDEG203122 SDE_0844SDE_0851SDE_0850
SCO SCO2088SCO5560SCO5560
SBOY300268 SBO_0074SBO_0081SBO_0080SBO_0276
SBAL402882 SHEW185_0397SHEW185_0403SHEW185_2043
SBAL399599 SBAL195_0409SBAL195_0415SBAL195_2090
SAVE227882 SAV6118SAV2679SAV2679
SAUR93062 SACOL2073SACOL2074SACOL2074
SAUR93061 SAOUHSC_02317SAOUHSC_02318SAOUHSC_02318
SAUR426430 NWMN_1986NWMN_1987NWMN_1987
SAUR418127 SAHV_2067SAHV_2068SAHV_2068
SAUR367830 SAUSA300_2038SAUSA300_2039SAUSA300_2039
SAUR359787 SAURJH1_2157SAURJH1_2158SAURJH1_2158
SAUR359786 SAURJH9_2119SAURJH9_2120SAURJH9_2120
SAUR282459 SAS1986SAS1987SAS1987
SAUR282458 SAR2169SAR2170SAR2170
SAUR273036 SAB1966CSAB1967CSAB1967C
SAUR196620 MW2005MW2006MW2006
SAUR158879 SA1886SA1887SA1887
SAUR158878 SAV2082SAV2083SAV2083
SARE391037 SARE_3442SARE_5102SARE_1162
SACI56780 SYN_01742SYN_00412SYN_00412
RXYL266117 RXYL_1497RXYL_2329RXYL_2952
RSP357808 ROSERS_3781ROSERS_3791ROSERS_3791
RSOL267608 RSC2848RSC2841RSC2842RSC2842
RRUB269796 RRU_A0954RRU_A0946RRU_A0947RRU_A0947
RMET266264 RMET_3132RMET_3125RMET_3126RMET_3126
RLEG216596 RL3311RL3301RL2801
RFER338969 RFER_3429RFER_3422RFER_3423
REUT381666 H16_A3277H16_A3270H16_A3271H16_A3271
REUT264198 REUT_A2983REUT_A2976REUT_A2977REUT_A2977
RETL347834 RHE_CH02851RHE_CH02843RHE_CH02464
RCAS383372 RCAS_1100RCAS_1090RCAS_1090
PTHE370438 PTH_1865PTH_1390PTH_1390
PSYR223283 PSPTO_4412PSPTO_4405PSPTO_4406PSPTO_4182
PSYR205918 PSYR_4106PSYR_4099PSYR_4100PSYR_3919
PSTU379731 PST_1078PST_1085PST_1084
PSP56811 PSYCPRWF_0136PSYCPRWF_0527PSYCPRWF_0526
PSP312153 PNUC_0163PNUC_0170PNUC_0169PNUC_0169
PSP296591 BPRO_1071BPRO_1078BPRO_1077BPRO_1077
PPUT76869 PPUTGB1_4516PPUTGB1_4509PPUTGB1_4510
PPUT351746 PPUT_4391PPUT_4384PPUT_4385PPUT_1521
PPUT160488 PP_1333PP_1340PP_1339PP_4346
PPRO298386 PBPRA3219PBPRA3213PBPRA1964PBPRB0927
PNAP365044 PNAP_3421PNAP_3414PNAP_3415PNAP_3415
PMUL272843 PM0138PM0145PM0144PM0144
PMEN399739 PMEN_0918PMEN_0925PMEN_0924PMEN_0924
PLUT319225 PLUT_2114PLUT_1331PLUT_1331
PLUM243265 PLU3658PLU3651PLU3652PLU3652
PING357804 PING_1143PING_1150PING_1149PING_0036
PHAL326442 PSHAA2508PSHAA2501PSHAA2502PSHAA2502
PFLU220664 PFL_5065PFL_5058PFL_5059PFL_5194
PFLU216595 PFLU0943PFLU0950PFLU0949PFLU0706
PFLU205922 PFL_4677PFL_4670PFL_4671
PENT384676 PSEEN4489PSEEN4482PSEEN4483
PCRY335284 PCRYO_2376PCRYO_2029PCRYO_2030
PCAR338963 PCAR_2206PCAR_2198PCAR_2199
PATL342610 PATL_3523PATL_3516PATL_3517
PARC259536 PSYC_2052PSYC_1747PSYC_1749
PAER208964 PA4416PA4409PA4410
PAER208963 PA14_57390PA14_57300PA14_57320
PACN267747 PPA0754PPA1359PPA1359
OIHE221109 OB1467OB1306OB1306
OANT439375 OANT_1740OANT_1748OANT_1747
NSP35761 NOCA_3067NOCA_3291NOCA_3291
NSP103690 ALL0036ALL0980ALL0980
NOCE323261 NOC_2865NOC_2857NOC_2858
NMUL323848 NMUL_A2498NMUL_A2490NMUL_A2491NMUL_A2491
NMEN374833 NMCC_1728NMCC_1719NMCC_1720
NMEN272831 NMC1749NMC1739NMC1740
NMEN122587 NMA2068NMA2059NMA2060
NMEN122586 NMB_0416NMB_0425NMB_0424
NGON242231 NGO1539NGO1530NGO1531
NEUT335283 NEUT_0250NEUT_0242NEUT_0243NEUT_0243
NEUR228410 NE0987NE0995NE0994
MXAN246197 MXAN_5608MXAN_5601MXAN_5741
MVAN350058 MVAN_3527MVAN_2143MVAN_2143
MTHE264732 MOTH_0839MOTH_1140MOTH_1140
MSUC221988 MS1671MS1663MS1664MS1664
MSP400668 MMWYL1_2618MMWYL1_2611MMWYL1_2612
MSP266779 MESO_2011MESO_2003MESO_2004
MPET420662 MPE_A0458MPE_A0465MPE_A0464
MLOT266835 MLL1559MLL1551MLL1812
MGIL350054 MFLV_2984MFLV_4219MFLV_4219
MFLA265072 MFLA_2273MFLA_2265MFLA_2266MFLA_2266
MCAP243233 MCA_1294MCA_2425MCA_2426
MAQU351348 MAQU_2456MAQU_2449MAQU_2450MAQU_2450
LXYL281090 LXX15300LXX09710LXX09710
LWEL386043 LWE0849LWE0848LWE0848
LSPH444177 BSPH_4312BSPH_4528BSPH_4313
LPNE400673 LPC_0523LPC_0530LPC_0529
LPNE297246 LPP2671LPP2664LPP2665
LPNE297245 LPL2541LPL2534LPL2535
LPNE272624 LPG2618LPG2611LPG2612
LMON265669 LMOF2365_0873LMOF2365_0872LMOF2365_0872
LMON169963 LMO0856LMO0855LMO0855
LINN272626 LIN0849LIN0848LIN0848
LCHO395495 LCHO_0518LCHO_0525LCHO_0524
KRAD266940 KRAD_3203KRAD_1363KRAD_1363
KPNE272620 GKPORF_B4369GKPORF_B4376GKPORF_B4375GKPORF_B4648
JSP375286 MMA_3019MMA_3012MMA_3013MMA_3013
ILOI283942 IL0432IL0439IL0438
HSOM228400 HSM_0624HSM_0631HSM_0630HSM_0630
HSOM205914 HS_0354HS_0361HS_0360HS_0360
HMOD498761 HM1_2055HM1_2570HM1_2570
HINF71421 HI_1134HI_1141HI_1140HI_1140
HINF374930 CGSHIEE_06380CGSHIEE_06345CGSHIEE_06350CGSHIEE_06350
HINF281310 NTHI1301NTHI1309NTHI1308NTHI1308
HHAL349124 HHAL_2095HHAL_2087HHAL_2088
HDUC233412 HD_0243HD_0820HD_0821HD_0821
HCHE349521 HCH_05887HCH_05880HCH_05881HCH_05881
HARS204773 HEAR2815HEAR2808HEAR2809HEAR2809
GURA351605 GURA_3978GURA_3971GURA_3971
GTHE420246 GTNG_0199GTNG_0198GTNG_0198
GSUL243231 GSU_3065GSU_3066GSU_3066
GMET269799 GMET_0408GMET_0415GMET_0415GMET_0415
GKAU235909 GK0224GK0223GK0223
FTUL458234 FTA_0518FTA_2016FTA_2017
FTUL418136 FTW_1651FTW_1905FTW_1906
FTUL401614 FTN_0522FTN_0162FTN_0161
FTUL393115 FTF0422FTF0186FTF0185
FTUL393011 FTH_0490FTH_1832FTH_1833
FTUL351581 FTL_0492FTL_1909FTL_1910
FSUC59374 FSU0993FSU0447FSU0447
FSP1855 FRANEAN1_7139FRANEAN1_1130FRANEAN1_1130
FSP106370 FRANCCI3_1411FRANCCI3_3609FRANCCI3_3609
FRANT MURFFTSQDDLB
FPHI484022 FPHI_0316FPHI_0662FPHI_0663
FALN326424 FRAAL2192FRAAL5814FRAAL5814
ESP42895 ENT638_0632ENT638_0639ENT638_0638ENT638_0850
EFER585054 EFER_0108EFER_0115EFER_0114EFER_2642
EFAE226185 EF_0845EF_0843EF_0843
ECOO157 MURFFTSQDDLBZ0477
ECOL83334 ECS0090ECS0097ECS0096ECS0431
ECOL585397 ECED1_0087ECED1_0094ECED1_0093ECED1_0404
ECOL585057 ECIAI39_0089ECIAI39_0096ECIAI39_0095ECIAI39_0301
ECOL585056 ECUMN_0086ECUMN_0093ECUMN_0092ECUMN_0418
ECOL585055 EC55989_0082EC55989_0089EC55989_0088EC55989_0386
ECOL585035 ECS88_0089ECS88_0096ECS88_0095ECS88_0375
ECOL585034 ECIAI1_0085ECIAI1_0092ECIAI1_0091ECIAI1_0377
ECOL481805 ECOLC_3571ECOLC_3564ECOLC_3565ECOLC_3251
ECOL469008 ECBD_3531ECBD_3524ECBD_3525ECBD_3283
ECOL439855 ECSMS35_0091ECSMS35_0098ECSMS35_0097ECSMS35_0410
ECOL413997 ECB_00087ECB_00094ECB_00093ECB_00328
ECOL409438 ECSE_0088ECSE_0095ECSE_0094ECSE_0401
ECOL405955 APECO1_1900APECO1_1893APECO1_1894APECO1_1627
ECOL364106 UTI89_C0095UTI89_C0102UTI89_C0101UTI89_C0398
ECOL362663 ECP_0088ECP_0095ECP_0094ECP_0440
ECOL331111 ECE24377A_0088ECE24377A_0095ECE24377A_0094ECE24377A_0406
ECOL316407 ECK0087:JW0084:B0086ECK0094:JW0091:B0093ECK0093:JW0090:B0092ECK0376:JW0372:B0381
ECOL199310 C0104C0111C0110C0487
ECAR218491 ECA3819ECA3812ECA3813ECA3813
DRED349161 DRED_0671DRED_1796DRED_1796
DPSY177439 DP2901DP0058DP0058
DOLE96561 DOLE_2791DOLE_1426DOLE_1426
DNOD246195 DNO_0985DNO_0978DNO_0979
DHAF138119 DSY3693DSY1579DSY1579
DARO159087 DARO_3502DARO_3495DARO_3496DARO_3496
CVIO243365 CV_4347CV_4340CV_4341CV_2472
CTET212717 CTC_01631CTC_00683CTC_00291
CSAL290398 CSAL_2194CSAL_2187CSAL_2188
CPSY167879 CPS_4469CPS_4462CPS_4463CPS_4463
CPER289380 CPR_1829CPR_1312CPR_1312
CPER195103 CPF_2115CPF_0816CPF_0816
CPER195102 CPE1861CPE0819CPE0819
CNOV386415 NT01CX_1938NT01CX_0559NT01CX_0559
CMIC443906 CMM_1863CMM_1346CMM_1346
CMIC31964 CMS1369CMS2047CMS2047
CJAP155077 CJA_2933CJA_2926CJA_2927
CHYD246194 CHY_2073CHY_1346CHY_1346
CDIP257309 DIP1602DIP1131DIP1131
CDIF272563 CD2655CD1408CD1626
CDES477974 DAUD_1440DAUD_1240DAUD_1240
CCHL340177 CAG_0051CAG_0905CAG_0905
CBUR434922 COXBU7E912_1982COXBU7E912_1968COXBU7E912_1427
CBUR360115 COXBURSA331_A0214COXBURSA331_A0228COXBURSA331_A1490
CBUR227377 CBU_0124CBU_0138CBU_1338
CBOT536232 CLM_1695CLM_0535CLM_0535
CBOT515621 CLJ_B1560CLJ_B0526CLJ_B0526
CBOT508765 CLL_A2444CLL_A3075CLL_A3075
CBOT498213 CLD_3092CLD_0290CLD_0290
CBOT441772 CLI_1542CLI_0538CLI_0538
CBOT441771 CLC_1495CLC_0526CLC_0526
CBOT441770 CLB_1483CLB_0493CLB_0493
CBOT36826 CBO1458CBO0452CBO0452
CBLO291272 BPEN_142BPEN_148BPEN_490
CBLO203907 BFL138BFL144BFL474
CBEI290402 CBEI_1581CBEI_0581CBEI_0581
CACE272562 CAC2128CAC2895CAC2895
BWEI315730 BCERKBAB4_0224BCERKBAB4_2524BCERKBAB4_0223
BVIE269482 BCEP1808_0531BCEP1808_0538BCEP1808_0537
BTRI382640 BT_1595BT_1587BT_1588
BTHU412694 BALH_0231BALH_0230BALH_0230
BTHU281309 BT9727_0218BT9727_2390BT9727_0217
BTHA271848 BTH_I1114BTH_I1121BTH_I1120
BSUI470137 BSUIS_A1487BSUIS_A1479BSUIS_A1480BSUIS_A1320
BSUI204722 BR_1435BR_1427BR_1428BR_1271
BSUB BSU04570BSU04560BSU04560
BSP36773 BCEP18194_A3641BCEP18194_A3648BCEP18194_A3647
BQUI283165 BQ08900BQ08820BQ08830
BPUM315750 BPUM_0428BPUM_0427BPUM_0427
BPSE320373 BURPS668_3529BURPS668_3522BURPS668_3523
BPSE320372 BURPS1710B_A3832BURPS1710B_A3825BURPS1710B_A3826
BPSE272560 BPSL3029BPSL3022BPSL3023
BPET94624 BPET0693BPET0700BPET0699BPET0699
BPER257313 BP3027BP3020BP3021BP3021
BPAR257311 BPP3756BPP3749BPP3750BPP3750
BOVI236 GBOORF1451GBOORF1443GBOORF1444GBOORF1279
BMEL359391 BAB1_1454BAB1_1446BAB1_1447BAB1_1291
BMEL224914 BMEI0575BMEI0583BMEI0582BMEI0727
BMAL320389 BMA10247_3228BMA10247_3235BMA10247_3234
BMAL320388 BMASAVP1_A0476BMASAVP1_A0469BMASAVP1_A0470
BMAL243160 BMA_2555BMA_2548BMA_2549
BLIC279010 BL02194BL02193BL02193
BHEN283166 BH11280BH11200BH11210
BHAL272558 BH2570BH1621BH1621
BCLA66692 ABC2359ABC2907ABC2907
BCIC186490 BCI_0522BCI_0388BCI_0388
BCER572264 BCA_0283BCA_2700BCA_0282
BCER405917 BCE_0266BCE_2628BCE_0265
BCER315749 BCER98_0233BCER98_0232BCER98_0232
BCER288681 BCE33L0220BCE33L2356BCE33L0219
BCER226900 BC_0258BC_0257BC_0257
BCEN331272 BCEN2424_0555BCEN2424_0562BCEN2424_0561
BCEN331271 BCEN_0073BCEN_0080BCEN_0079
BCAN483179 BCAN_A1468BCAN_A1460BCAN_A1461BCAN_A1292
BBRO257310 BB4202BB4195BB4196BB4196
BBAC360095 BARBAKC583_0951BARBAKC583_0943BARBAKC583_0944
BANT592021 BAA_0273BAA_2673BAA_2673
BANT568206 BAMEG_0275BAMEG_1985BAMEG_1985
BANT261594 GBAA0246GBAA2610GBAA2610
BANT260799 BAS0232BAS2435BAS2435
BAMY326423 RBAM_004910RBAM_004900RBAM_004900
BAMB398577 BAMMC406_0484BAMMC406_0491BAMMC406_0490
BAMB339670 BAMB_0459BAMB_0466BAMB_0465
BABO262698 BRUAB1_1430BRUAB1_1422BRUAB1_1423BRUAB1_1273
ASP76114 EBA1449EBB42EBA1442
ASP62977 ACIAD3364ACIAD3514ACIAD3515
ASP62928 AZO0880AZO0887AZO0886
ASP232721 AJS_3674AJS_3667AJS_3668
ASP1667 ARTH_1566ARTH_2514ARTH_2514
APLE434271 APJL_0015APJL_0022APJL_0021APJL_0021
APLE416269 APL_0014APL_0021APL_0020APL_0020
AORE350688 CLOS_1375CLOS_0292CLOS_0292
AHYD196024 AHA_3888AHA_3882AHA_2404
AFER243159 AFE_2816AFE_2824AFE_2823
AEHR187272 MLG_2197MLG_2189MLG_2190
ADEH290397 ADEH_3767ADEH_3774ADEH_3774
ACEL351607 ACEL_1006ACEL_1586ACEL_1586
ACAU438753 AZC_4542AZC_4562AZC_4561
ABOR393595 ABO_0594ABO_0601ABO_0600
ABAU360910 BAV2883BAV2876BAV2877BAV2877
AAVE397945 AAVE_0817AAVE_0824AAVE_0823


Organism features enriched in list (features available for 296 out of the 314 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 7.844e-61717
Arrangment:Pairs 1.587e-1188112
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00052651111
Endospores:No 7.038e-1170211
Endospores:Yes 1.078e-114953
GC_Content_Range4:0-40 5.307e-975213
GC_Content_Range4:40-60 0.0000259137224
GC_Content_Range7:0-30 0.00698191647
GC_Content_Range7:30-40 1.454e-659166
GC_Content_Range7:50-60 4.159e-981107
GC_Content_Range7:70-100 0.00581191011
Genome_Size_Range5:0-2 1.088e-3317155
Genome_Size_Range5:2-4 0.0077602112197
Genome_Size_Range5:4-6 6.289e-13133184
Genome_Size_Range5:6-10 0.00097713447
Genome_Size_Range9:0-1 1.144e-6227
Genome_Size_Range9:1-2 1.479e-2515128
Genome_Size_Range9:4-5 0.00025566496
Genome_Size_Range9:5-6 6.139e-96988
Genome_Size_Range9:6-8 0.00058842938
Gram_Stain:Gram_Neg 2.522e-6196333
Habitat:Multiple 0.0022556105178
Habitat:Specialized 0.00863461953
Motility:No 0.002689263151
Motility:Yes 0.0000330159267
Optimal_temp.:30-37 0.00007161718
Optimal_temp.:35-37 0.00013051313
Oxygen_Req:Aerobic 0.0070831106185
Oxygen_Req:Anaerobic 0.001786139102
Oxygen_Req:Facultative 0.0014607118201
Oxygen_Req:Microaerophilic 0.0092381418
Pathogenic_in:Animal 0.00006904866
Pathogenic_in:Human 0.0059671121213
Pathogenic_in:No 0.000134794226
Pathogenic_in:Plant 0.00346731315
Shape:Coccobacillus 0.00052651111
Shape:Coccus 0.00385403182
Shape:Rod 1.662e-14221347
Shape:Sphere 0.0002134219
Shape:Spiral 9.783e-7434
Temp._range:Hyperthermophilic 1.344e-6123
Temp._range:Mesophilic 0.0020927253473
Temp._range:Psychrophilic 0.002109799



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 215
Effective number of orgs (counting one per cluster within 468 clusters): 182

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM41
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi1
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB41
TSP28240 Thermotoga sp.1
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TMAR243274 ncbi Thermotoga maritima MSB81
TLET416591 ncbi Thermotoga lettingae TMO1
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP1131 Synechococcus sp. CC96051
SSOL273057 ncbi Sulfolobus solfataricus P20
SRUB309807 ncbi Salinibacter ruber DSM 138551
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPNE488221 ncbi Streptococcus pneumoniae 705851
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-61
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-141
SPNE171101 ncbi Streptococcus pneumoniae R61
SPNE170187 ncbi Streptococcus pneumoniae G541
SPNE1313 Streptococcus pneumoniae1
SMAR399550 ncbi Staphylothermus marinus F10
SGOR29390 Streptococcus gordonii Challis1
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170251
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170291
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316058 ncbi Rhodopseudomonas palustris HaA21
RPAL316057 ncbi Rhodopseudomonas palustris BisB51
RPAL258594 ncbi Rhodopseudomonas palustris CGA0091
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal21
RCON272944 ncbi Rickettsia conorii Malish 71
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 231
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92151
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96011
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2551
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NHAM323097 ncbi Nitrobacter hamburgensis X141
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
JSP290400 ncbi Jannaschia sp. CCS11
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GOXY290633 ncbi Gluconobacter oxydans 621H1
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH11
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FMAG334413 ncbi Finegoldia magna ATCC 293281
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough1
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DSHI398580 ncbi Dinoroseobacter shibae DFL 121
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP501479 Citreicella sp. SE451
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4111
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCAV227941 ncbi Chlamydophila caviae GPIC0
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1351
BSP376 Bradyrhizobium sp.1
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)1
BHER314723 ncbi Borrelia hermsii DAH1
BGAR290434 ncbi Borrelia garinii PBi1
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BBUR224326 ncbi Borrelia burgdorferi B311
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)1
BAFZ390236 ncbi Borrelia afzelii PKo1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ABUT367737 ncbi Arcobacter butzleri RM40180


Names of the homologs of the genes in the group in each of these orgs
  EG10622   EG10342   EG10214   EG10213   
ZMOB264203 ZMO0827
WSUC273121
WPIP955
WPIP80849 WB_0373
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496 TW0241
TWHI203267 TW505
TVOL273116
TTEN273068 TTE2545
TSP28240 TRQ2_0689
TPET390874 TPET_0665
TPEN368408
TMAR243274 TM_0259
TLET416591 TLET_1858
TKOD69014
TDEN326298
TACI273075
STOK273063
SSUI391296 SSU98_1367
SSUI391295 SSU05_1352
SSP387093
SSP1131 SYNCC9605_0849
SSOL273057
SRUB309807 SRU_2197
SPYO198466 SPYM3_1084
SPYO193567 SPS0780
SPNE488221 SP70585_1711
SPNE487214 SPH_1779
SPNE487213 SPT_1610
SPNE171101 SPR1515
SPNE170187 SPN13081
SPNE1313 SPJ_1566
SMAR399550
SGOR29390 SGO_1447
SAGA211110 GBS0787
SAGA208435 SAG_0767
SAGA205921 SAK_0892
SACI330779
RTYP257363
RSPH349102 RSPH17025_0697
RSPH349101 RSPH17029_0787
RSPH272943 RSP_2111
RSAL288705 RSAL33209_0873
RRIC452659
RRIC392021
RPRO272947
RPAL316058 RPB_1990
RPAL316057 RPD_3398
RPAL258594 RPA3534
RMAS416276
RFEL315456 RF_0369
RCON272944 RC0911
RCAN293613
RBEL391896
RBEL336407
RAKA293614
PTOR263820
PSP117
PRUM264731 GFRORF2235
PPEN278197
PMOB403833
PMAR93060 P9215_15351
PMAR74546 PMT9312_1402
PMAR59920 PMN2A_0872
PMAR167555 NATL1_17261
PMAR167546 P9301ORF_1517
PMAR167542 P9515ORF_1533
PMAR167540 PMM1306
PMAR167539 PRO_1380
PMAR146891 A9601_15051
PISL384616
PHOR70601
PGIN242619 PG_1106
PFUR186497
PDIS435591 BDI_3366
PAST100379
PARS340102
PAER178306
PABY272844
OTSU357244
NWIN323098 NWI_1047
NSP387092
NSEN222891
NPHA348780
NHAM323097 NHAM_1275
NARO279238
MTHE349307
MTHE187420
MTBCDC MT3059
MSYN262723
MSTA339860
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631 ML1678
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBAR269797
MAVI243243 MAV_3830
MART243272
MAEO419665
MACE188937
LSAK314315
LREU557436 LREU_0477
LPLA220668 LP_2345
LMES203120 LEUM_0264
LLAC272623 L140690
LLAC272622 LACR_0387
LINT363253
LHEL405566 LHV_0143
LGAS324831 LGAS_0107
LCAS321967
LBOR355277 LBJ_1946
LBOR355276 LBL_1338
LBIF456481 LEPBI_I1863
LBIF355278 LBF_1808
JSP290400 JANN_2765
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HMUK485914
HMAR272569
HHEP235279
HBUT415426
HACI382638
GOXY290633 GOX0161
GFOR411154
GBET391165 GBCGDNIH1_0433
FNUC190304
FNOD381764 FNOD_1588
FMAG334413 FMG_0263
FJOH376686 FJOH_2618
ERUM302409
ERUM254945
ECHA205920
ECAN269484
DVUL882 DVU_0334
DSP255470
DSP216389
DSHI398580 DSHI_2419
DETH243164
DDES207559
CTRA471473
CTRA471472
CSUL444179
CSP501479 CSE45_2546
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPEL335992
CMUR243161
CMET456442
CMAQ397948
CKOR374847
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537 JK1217
CHUT269798 CHU_0699
CHOM360107
CFET360106
CFEL264202
CCUR360105
CCON360104
CCAV227941
CABO218497
BXEN266265
BTUR314724 BT0200
BSP376 BRADO2810
BSP107806 BU220
BHER314723 BH0200
BGAR290434 BG0199
BFRA295405 BF0451
BFRA272559 BF0391
BBUR224326 BB_0200
BAPH372461
BAPH198804 BUSG208
BAFZ390236 BAPKO_0203
AYEL322098
AURANTIMONAS
APHA212042
APER272557
AMAR234826
ALAI441768
AFUL224325
ABUT367737


Organism features enriched in list (features available for 201 out of the 215 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 2.336e-815112
Disease:Pharyngitis 0.000181988
Disease:bronchitis_and_pneumonitis 0.000181988
Endospores:No 9.856e-9104211
GC_Content_Range4:0-40 7.711e-13113213
GC_Content_Range4:40-60 0.002730863224
GC_Content_Range4:60-100 1.011e-725145
GC_Content_Range7:0-30 3.406e-63147
GC_Content_Range7:30-40 1.117e-682166
GC_Content_Range7:50-60 3.389e-814107
GC_Content_Range7:60-70 2.994e-625134
Genome_Size_Range5:0-2 2.858e-35117155
Genome_Size_Range5:4-6 5.996e-1820184
Genome_Size_Range5:6-10 3.163e-7247
Genome_Size_Range9:0-1 2.864e-92427
Genome_Size_Range9:1-2 6.418e-2493128
Genome_Size_Range9:3-4 0.00463571777
Genome_Size_Range9:4-5 1.478e-61496
Genome_Size_Range9:5-6 6.306e-11688
Genome_Size_Range9:6-8 1.193e-6138
Gram_Stain:Gram_Pos 0.000025632150
Habitat:Host-associated 0.004520984206
Habitat:Multiple 0.001032246178
Habitat:Specialized 0.00077612953
Habitat:Terrestrial 0.0010715331
Motility:Yes 0.003396678267
Optimal_temp.:37 0.009474546106
Oxygen_Req:Aerobic 0.000492947185
Oxygen_Req:Anaerobic 0.000029353102
Oxygen_Req:Facultative 0.000796853201
Oxygen_Req:Microaerophilic 0.00371501218
Pathogenic_in:Animal 0.00258731366
Pathogenic_in:Swine 0.004713455
Salinity:Extreme_halophilic 0.007407167
Shape:Irregular_coccus 8.670e-91717
Shape:Rod 4.109e-1379347
Shape:Sphere 7.854e-61619
Shape:Spiral 1.637e-62534
Temp._range:Hyperthermophilic 1.106e-82123
Temp._range:Mesophilic 0.0025791151473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GLYCOLATEMET-PWY (glycolate and glyoxylate degradation I)2702030.4335
ARO-PWY (chorismate biosynthesis I)5103080.4245
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222720.4073
GLYCOCAT-PWY (glycogen degradation I)2461860.4073
PANTO-PWY (pantothenate biosynthesis I)4722920.4054
BRANCHED-CHAIN-AA-SYN-PWY (superpathway of leucine, valine, and isoleucine biosynthesis)4582860.4013



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG10342   EG10214   EG10213   
EG106220.9997380.9997610.999344
EG103420.9998840.999333
EG102140.999898
EG10213



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PAIRWISE BLAST SCORES:

  EG10622   EG10342   EG10214   EG10213   
EG106220.0f0---
EG10342-0.0f0--
EG10214--0.0f02.2e-46
EG10213--2.2e-460.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- PEPTIDOGLYCANSYN-PWY (peptidoglycan biosynthesis I (meso-diaminopimelate containing)) (degree of match pw to cand: 0.187, degree of match cand to pw: 0.750, average score: 0.923)
  Genes in pathway or complex:
             0.9866 0.9764 EG11358 (murA) UDPNACETYLGLUCOSAMENOLPYRTRANS-MONOMER (UDP-N-acetylglucosamine enolpyruvoyl transferase)
             0.9738 0.9449 EG11205 (murB) UDPNACETYLMURAMATEDEHYDROG-MONOMER (UDP-N-acetylenolpyruvoylglucosamine reductase)
             0.9995 0.9986 EG10623 (murG) NACGLCTRANS-MONOMER (N-acetylglucosaminyl transferase)
   *in cand* 0.9997 0.9993 EG10622 (murF) UDP-NACMURALGLDAPAALIG-MONOMER (D-alanyl-D-alanine-adding enzyme)
             0.9997 0.9992 EG10619 (murC) UDP-NACMUR-ALA-LIG-MONOMER (UDP-N-acetylmuramate-alanine ligase)
             0.9995 0.9985 EG10620 (murD) UDP-NACMURALA-GLU-LIG-MONOMER (UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase)
             0.8376 0.7858 EG11204 (murI) GLUTRACE-MONOMER (MurI)
             0.9992 0.9976 EG10621 (murE) UDP-NACMURALGLDAPLIG-MONOMER (UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase)
   *in cand* 0.9996 0.9993 EG10213 (ddlA) DALADALALIGA-MONOMER (D-alanine-D-alanine ligase A)
   *in cand* 0.9999 0.9998 EG10214 (ddlB) DALADALALIGB-MONOMER (ddlB)
             0.9996 0.9988 EG10604 (mraY) PHOSNACMURPENTATRANS-MONOMER (phospho-N-acetylmuramoyl-pentapeptide transferase)
             0.7339 0.5571 G7322 (pbpC) G7322-MONOMER (peptidoglycan glycosyltransferase)
             0.9625 0.9090 G7668 (mtgA) G7668-MONOMER (biosynthetic peptidoglycan transglycosylase)
             0.9625 0.9149 EG10605 (mrcB) EG10605-MONOMER (MrcB)
             0.8995 0.8723 EG10748 (mrcA) EG10748-MONOMER (peptidoglycan synthetase; penicillin-binding protein 1A)
             0.9993 0.9980 EG10341 (ftsI) EG10341-MONOMER (essential cell division protein FtsI; penicillin-binding protein 3)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9993 EG10342 (ftsQ) EG10342-MONOMER (essential cell division protein FtsQ)
   This pathway has holes

- PWY-6387 (UDP-N-acetylmuramoyl-pentapeptide biosynthesis III (meso-DAP-containing)) (degree of match pw to cand: 0.333, degree of match cand to pw: 0.750, average score: 0.963)
  Genes in pathway or complex:
             0.9866 0.9764 EG11358 (murA) UDPNACETYLGLUCOSAMENOLPYRTRANS-MONOMER (UDP-N-acetylglucosamine enolpyruvoyl transferase)
             0.9738 0.9449 EG11205 (murB) UDPNACETYLMURAMATEDEHYDROG-MONOMER (UDP-N-acetylenolpyruvoylglucosamine reductase)
   *in cand* 0.9997 0.9993 EG10622 (murF) UDP-NACMURALGLDAPAALIG-MONOMER (D-alanyl-D-alanine-adding enzyme)
             0.9997 0.9992 EG10619 (murC) UDP-NACMUR-ALA-LIG-MONOMER (UDP-N-acetylmuramate-alanine ligase)
             0.9995 0.9985 EG10620 (murD) UDP-NACMURALA-GLU-LIG-MONOMER (UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase)
             0.8376 0.7858 EG11204 (murI) GLUTRACE-MONOMER (MurI)
             0.9992 0.9976 EG10621 (murE) UDP-NACMURALGLDAPLIG-MONOMER (UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase)
   *in cand* 0.9996 0.9993 EG10213 (ddlA) DALADALALIGA-MONOMER (D-alanine-D-alanine ligase A)
   *in cand* 0.9999 0.9998 EG10214 (ddlB) DALADALALIGB-MONOMER (ddlB)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9993 EG10342 (ftsQ) EG10342-MONOMER (essential cell division protein FtsQ)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10214 EG10342 (centered at EG10342)
EG10213 (centered at EG10213)
EG10622 (centered at EG10622)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG10622   EG10342   EG10214   EG10213   
410/623207/623350/623353/623
AAEO224324:0:Tyes202-0-
AAUR290340:2:Tyes0--753
AAVE397945:0:Tyes076-
ABAC204669:0:Tyes0--974
ABAU360910:0:Tyes7011
ABOR393595:0:Tyes076-
ACAU438753:0:Tyes02019-
ACEL351607:0:Tyes0-579579
ACRY349163:8:Tyes0-7-
ADEH290397:0:Tyes0-77
AEHR187272:0:Tyes801-
AFER243159:0:Tyes087-
AHYD196024:0:Tyes14081402-0
AMAR329726:9:Tyes0--270
AMET293826:0:Tyes0--915
ANAE240017:0:Tyes610--0
AORE350688:0:Tyes1080-00
APLE416269:0:Tyes0766
APLE434271:0:Tno0766
ASAL382245:5:Tyes06--
ASP1667:3:Tyes0-949949
ASP232721:2:Tyes701-
ASP62928:0:Tyes076-
ASP62977:0:Tyes0135136-
ASP76114:2:Tyes701-
AVAR240292:3:Tyes2288--0
BABO262698:1:Tno1531451460
BAFZ390236:2:Fyes---0
BAMB339670:3:Tno076-
BAMB398577:3:Tno076-
BAMY326423:0:Tyes1-00
BANT260799:0:Tno0-22452245
BANT261594:2:Tno0-21772177
BANT568206:2:Tyes0-16611661
BANT592021:2:Tno0-23002300
BAPH198804:0:Tyes--0-
BBAC264462:0:Tyes2433--0
BBAC360095:0:Tyes801-
BBRO257310:0:Tyes7011
BBUR224326:21:Fno---0
BCAN483179:1:Tno1641561570
BCEN331271:2:Tno076-
BCEN331272:3:Tyes076-
BCER226900:1:Tyes1-00
BCER288681:0:Tno1-21850
BCER315749:1:Tyes1-00
BCER405917:1:Tyes1-22270
BCER572264:1:Tno1-23080
BCIC186490:0:Tyes122-00
BCLA66692:0:Tyes0-560560
BFRA272559:1:Tyes0---
BFRA295405:0:Tno0---
BGAR290434:2:Fyes---0
BHAL272558:0:Tyes949-00
BHEN283166:0:Tyes801-
BHER314723:0:Fyes---0
BJAP224911:0:Fyes--30550
BLIC279010:0:Tyes1-00
BLON206672:0:Tyes970--0
BMAL243160:1:Tno701-
BMAL320388:1:Tno701-
BMAL320389:1:Tyes076-
BMEL224914:1:Tno087154
BMEL359391:1:Tno1521441450
BOVI236:1:Tyes1371291300
BPAR257311:0:Tno7011
BPER257313:0:Tyes7011
BPET94624:0:Tyes0766
BPSE272560:1:Tyes701-
BPSE320372:1:Tno701-
BPSE320373:1:Tno701-
BPUM315750:0:Tyes1-00
BQUI283165:0:Tyes801-
BSP107806:2:Tyes0---
BSP36773:2:Tyes076-
BSP376:0:Tyes---0
BSUB:0:Tyes1-00
BSUI204722:1:Tyes1581501510
BSUI470137:1:Tno1591511520
BTHA271848:1:Tno076-
BTHE226186:0:Tyes0--69
BTHU281309:1:Tno1-21440
BTHU412694:1:Tno1-00
BTRI382640:1:Tyes801-
BTUR314724:0:Fyes---0
BVIE269482:7:Tyes076-
BWEI315730:4:Tyes1-23150
CACE272562:1:Tyes0-785785
CAULO:0:Tyes15-0-
CBEI290402:0:Tyes987-00
CBLO203907:0:Tyes06-333
CBLO291272:0:Tno06-342
CBOT36826:1:Tno980-00
CBOT441770:0:Tyes974-00
CBOT441771:0:Tno962-00
CBOT441772:1:Tno986-00
CBOT498213:1:Tno990-00
CBOT508765:1:Tyes0-625625
CBOT515621:2:Tyes1017-00
CBOT536232:0:Tno1120-00
CBUR227377:1:Tyes014-1158
CBUR360115:1:Tno014-1188
CBUR434922:2:Tno529516-0
CCHL340177:0:Tyes0-860860
CDES477974:0:Tyes203-00
CDIF272563:1:Tyes1260-0219
CDIP257309:0:Tyes470-00
CEFF196164:0:Fyes640--0
CGLU196627:0:Tyes809--0
CHUT269798:0:Tyes0---
CHYD246194:0:Tyes713-00
CJAP155077:0:Tyes701-
CJEI306537:0:Tyes---0
CKLU431943:1:Tyes--00
CMIC31964:2:Tyes0-656656
CMIC443906:2:Tyes534-00
CNOV386415:0:Tyes0-10141014
CPER195102:1:Tyes1043-00
CPER195103:0:Tno1279-00
CPER289380:3:Tyes510-00
CPHY357809:0:Tyes--03674
CPSY167879:0:Tyes7011
CRUT413404:0:Tyes0-557-
CSAL290398:0:Tyes701-
CSP501479:8:Fyes0---
CSP78:2:Tyes11-0-
CTEP194439:0:Tyes0--1287
CTET212717:0:Tyes1240-3540
CVES412965:0:Tyes0-523-
CVIO243365:0:Tyes1940193319340
DARO159087:0:Tyes7011
DGEO319795:1:Tyes--00
DHAF138119:0:Tyes2130-00
DNOD246195:0:Tyes701-
DOLE96561:0:Tyes1385-00
DPSY177439:2:Tyes2918-00
DRAD243230:3:Tyes--00
DRED349161:0:Tyes0-11251125
DSHI398580:5:Tyes--0-
DVUL882:1:Tyes--0-
ECAR218491:0:Tyes7011
ECOL199310:0:Tno076363
ECOL316407:0:Tno076289
ECOL331111:6:Tno076299
ECOL362663:0:Tno076349
ECOL364106:1:Tno076300
ECOL405955:2:Tyes076277
ECOL409438:6:Tyes076321
ECOL413997:0:Tno076247
ECOL439855:4:Tno076305
ECOL469008:0:Tno2562492500
ECOL481805:0:Tno3223153160
ECOL585034:0:Tno076284
ECOL585035:0:Tno076276
ECOL585055:0:Tno076299
ECOL585056:2:Tno076328
ECOL585057:0:Tno076210
ECOL585397:0:Tno076293
ECOL83334:0:Tno076349
ECOLI:0:Tno076297
ECOO157:0:Tno076346
EFAE226185:3:Tyes2-00
EFER585054:1:Tyes0762514
ELIT314225:0:Tyes0-7-
ESP42895:1:Tyes076220
FALN326424:0:Tyes0-35453545
FJOH376686:0:Tyes---0
FMAG334413:1:Tyes---0
FNOD381764:0:Tyes--0-
FPHI484022:1:Tyes0360361-
FRANT:0:Tno22810-
FSP106370:0:Tyes0-21832183
FSP1855:0:Tyes5915-00
FSUC59374:0:Tyes536-00
FTUL351581:0:Tno012451246-
FTUL393011:0:Tno011061107-
FTUL393115:0:Tyes22210-
FTUL401614:0:Tyes35710-
FTUL418136:0:Tno0212213-
FTUL458234:0:Tno011431144-
GBET391165:0:Tyes0---
GKAU235909:1:Tyes1-00
GMET269799:1:Tyes0777
GOXY290633:5:Tyes--0-
GSUL243231:0:Tyes-011
GTHE420246:1:Tyes1-00
GURA351605:0:Tyes7-00
GVIO251221:0:Tyes2126-0-
HARS204773:0:Tyes7011
HAUR316274:2:Tyes10--0
HCHE349521:0:Tyes7011
HDUC233412:0:Tyes0512513513
HHAL349124:0:Tyes801-
HINF281310:0:Tyes0766
HINF374930:0:Tyes7011
HINF71421:0:Tno0766
HMOD498761:0:Tyes0-538538
HNEP81032:0:Tyes2590-0-
HSOM205914:1:Tyes0766
HSOM228400:0:Tno0766
ILOI283942:0:Tyes076-
JSP290400:1:Tyes0---
JSP375286:0:Tyes7011
KPNE272620:2:Tyes076271
KRAD266940:2:Fyes2717-00
LACI272621:0:Tyes--00
LBIF355278:2:Tyes--0-
LBIF456481:2:Tno--0-
LBOR355276:1:Tyes--0-
LBOR355277:1:Tno--0-
LBRE387344:2:Tyes0--713
LCHO395495:0:Tyes076-
LDEL321956:0:Tyes--00
LDEL390333:0:Tyes--00
LGAS324831:0:Tyes---0
LHEL405566:0:Tyes---0
LINN272626:1:Tno1-00
LINT189518:1:Tyes--00
LINT267671:1:Tno--00
LJOH257314:0:Tyes--00
LLAC272622:5:Tyes---0
LLAC272623:0:Tyes---0
LMES203120:1:Tyes---0
LMON169963:0:Tno1-00
LMON265669:0:Tyes1-00
LPLA220668:0:Tyes---0
LPNE272624:0:Tno70-1
LPNE297245:1:Fno70-1
LPNE297246:1:Fyes70-1
LPNE400673:0:Tno07-6
LREU557436:0:Tyes---0
LSPH444177:1:Tyes0-2031
LWEL386043:0:Tyes1-00
LXYL281090:0:Tyes506-00
MABS561007:1:Tyes0--1287
MAER449447:0:Tyes0--133
MAQU351348:2:Tyes7011
MAVI243243:0:Tyes---0
MBOV233413:0:Tno0--836
MBOV410289:0:Tno0--836
MCAP243233:0:Tyes010831084-
MEXT419610:0:Tyes1685-0-
MFLA265072:0:Tyes8011
MGIL350054:3:Tyes0-12381238
MLEP272631:0:Tyes---0
MLOT266835:2:Tyes7-0199
MMAG342108:0:Tyes0-7-
MMAR394221:0:Tyes8-0-
MPET420662:1:Tyes076-
MSME246196:0:Tyes1824--0
MSP164756:1:Tno1340--0
MSP164757:0:Tno1364--0
MSP189918:2:Tyes1354--0
MSP266779:3:Tyes801-
MSP400668:0:Tyes701-
MSP409:2:Tyes0--645
MSUC221988:0:Tyes8011
MTBCDC:0:Tno---0
MTBRV:0:Tno0--836
MTHE264732:0:Tyes0-298298
MTUB336982:0:Tno0--805
MTUB419947:0:Tyes0--871
MVAN350058:0:Tyes1376-00
MXAN246197:0:Tyes7-0138
NEUR228410:0:Tyes087-
NEUT335283:2:Tyes8011
NFAR247156:2:Tyes0--2463
NGON242231:0:Tyes901-
NHAM323097:2:Tyes0---
NMEN122586:0:Tno098-
NMEN122587:0:Tyes901-
NMEN272831:0:Tno901-
NMEN374833:0:Tno901-
NMUL323848:3:Tyes8011
NOCE323261:1:Tyes801-
NSP103690:6:Tyes0-953953
NSP35761:1:Tyes0-224224
NWIN323098:0:Tyes0---
OANT439375:5:Tyes087-
OCAR504832:0:Tyes0-9-
OIHE221109:0:Tyes160-00
PACN267747:0:Tyes0-614614
PAER208963:0:Tyes701-
PAER208964:0:Tno701-
PARC259536:0:Tyes30902-
PATL342610:0:Tyes701-
PCAR338963:0:Tyes801-
PCRY335284:1:Tyes34701-
PDIS435591:0:Tyes0---
PENT384676:0:Tyes701-
PFLU205922:0:Tyes701-
PFLU216595:1:Tyes2322392380
PFLU220664:0:Tyes701134
PGIN242619:0:Tyes0---
PHAL326442:1:Tyes7011
PING357804:0:Tyes1073108010790
PINT246198:1:Tyes32--0
PLUM243265:0:Fyes7011
PLUT319225:0:Tyes766-00
PMAR146891:0:Tyes---0
PMAR167539:0:Tyes---0
PMAR167540:0:Tyes---0
PMAR167542:0:Tyes---0
PMAR167546:0:Tyes---0
PMAR167555:0:Tyes---0
PMAR59920:0:Tno---0
PMAR74546:0:Tyes---0
PMAR74547:0:Tyes83--0
PMAR93060:0:Tyes---0
PMEN399739:0:Tyes0766
PMUL272843:1:Tyes0766
PNAP365044:8:Tyes7011
PPRO298386:1:Tyes---0
PPRO298386:2:Tyes124812420-
PPUT160488:0:Tno0763006
PPUT351746:0:Tyes2877287028710
PPUT76869:0:Tno701-
PRUM264731:0:Tyes--0-
PSP296591:2:Tyes0766
PSP312153:0:Tyes0766
PSP56811:2:Tyes0395394-
PSTU379731:0:Tyes076-
PSYR205918:0:Tyes1881811820
PSYR223283:2:Tyes2272202210
PTHE370438:0:Tyes481-00
RALB246199:0:Tyes1042--0
RCAS383372:0:Tyes10-00
RCON272944:0:Tno0---
RDEN375451:4:Tyes10-0-
RETL347834:5:Tyes379-3710
REUT264198:3:Tyes7011
REUT381666:2:Tyes7011
RFEL315456:2:Tyes0---
RFER338969:1:Tyes701-
RLEG216596:6:Tyes503-4930
RMET266264:2:Tyes7011
RPAL258594:0:Tyes0---
RPAL316055:0:Tyes0-10-
RPAL316056:0:Tyes0-1115-
RPAL316057:0:Tyes0---
RPAL316058:0:Tyes0---
RPOM246200:1:Tyes0-18-
RRUB269796:1:Tyes8011
RSAL288705:0:Tyes---0
RSOL267608:1:Tyes7011
RSP101510:3:Fyes0--5402
RSP357808:0:Tyes0-1010
RSPH272943:4:Tyes--0-
RSPH349101:2:Tno--0-
RSPH349102:5:Tyes--0-
RXYL266117:0:Tyes0-8231440
SACI56780:0:Tyes0-317317
SAGA205921:0:Tno---0
SAGA208435:0:Tno---0
SAGA211110:0:Tyes---0
SALA317655:1:Tyes7-0-
SARE391037:0:Tyes2189-38140
SAUR158878:1:Tno0-11
SAUR158879:1:Tno0-11
SAUR196620:0:Tno0-11
SAUR273036:0:Tno0-11
SAUR282458:0:Tno0-11
SAUR282459:0:Tno0-11
SAUR359786:1:Tno0-11
SAUR359787:1:Tno0-11
SAUR367830:3:Tno0-11
SAUR418127:0:Tyes0-11
SAUR426430:0:Tno0-11
SAUR93061:0:Fno0-11
SAUR93062:1:Tno0-11
SAVE227882:1:Fyes3502-00
SBAL399599:3:Tyes06-1702
SBAL402882:1:Tno06-1650
SBOY300268:1:Tyes076187
SCO:2:Fyes0-35183518
SDEG203122:0:Tyes076-
SDEN318161:0:Tyes06-2046
SDYS300267:1:Tyes076233
SELO269084:0:Tyes532-00
SENT209261:0:Tno0762241
SENT220341:0:Tno076245
SENT295319:0:Tno0766
SENT321314:2:Tno076307
SENT454169:2:Tno076329
SEPI176279:1:Tyes0-11
SEPI176280:0:Tno0-11
SERY405948:0:Tyes0-264264
SFLE198214:0:Tyes076154
SFLE373384:0:Tno076256
SFUM335543:0:Tyes0-629629
SGLO343509:3:Tyes06468468
SGOR29390:0:Tyes---0
SHAE279808:0:Tyes1-00
SHAL458817:0:Tyes06-1450
SHIGELLA:0:Tno076160
SLAC55218:1:Fyes0-3335-
SLOI323850:0:Tyes60--
SMED366394:3:Tyes9-0-
SMEL266834:2:Tyes1001-
SMUT210007:0:Tyes3--0
SONE211586:1:Tyes19791973-0
SPEA398579:0:Tno14311425-0
SPNE1313:0:Tyes---0
SPNE170187:0:Tyes---0
SPNE171101:0:Tno---0
SPNE487213:0:Tno---0
SPNE487214:0:Tno---0
SPNE488221:0:Tno---0
SPRO399741:1:Tyes076631
SPYO160490:0:Tno0--1
SPYO186103:0:Tno0--1
SPYO193567:0:Tno---0
SPYO198466:0:Tno---0
SPYO286636:0:Tno0--1
SPYO293653:0:Tno0--1
SPYO319701:0:Tyes0--1
SPYO370551:0:Tno0--1
SPYO370552:0:Tno0--1
SPYO370553:0:Tno0--1
SPYO370554:0:Tyes0--1
SRUB309807:1:Tyes---0
SSAP342451:2:Tyes1-00
SSED425104:0:Tyes06-1567
SSON300269:1:Tyes076248
SSP1131:0:Tyes---0
SSP1148:0:Tyes500--0
SSP292414:2:Tyes1353-0-
SSP321327:0:Tyes0-33-
SSP321332:0:Tyes0-6969
SSP644076:5:Fyes--0-
SSP644076:7:Fyes0---
SSP64471:0:Tyes783-00
SSP84588:0:Tyes0--647
SSP94122:1:Tyes14601454-0
SSUI391295:0:Tyes---0
SSUI391296:0:Tyes---0
STHE264199:0:Tyes0--7
STHE292459:0:Tyes728--0
STHE299768:0:Tno0--7
STHE322159:2:Tyes0--10
STRO369723:0:Tyes1920-33070
STYP99287:1:Tyes076254
SWOL335541:0:Tyes0-323323
TCRU317025:0:Tyes02221-
TDEN243275:0:Tyes--00
TDEN292415:0:Tyes087-
TELO197221:0:Tyes1042-00
TERY203124:0:Tyes0--3267
TFUS269800:0:Tyes475--0
TLET416591:0:Tyes--0-
TMAR243274:0:Tyes--0-
TPAL243276:0:Tyes--00
TPET390874:0:Tno--0-
TPSE340099:0:Tyes606-00
TROS309801:1:Tyes0-66
TSP1755:0:Tyes1367-00
TSP28240:0:Tyes--0-
TTEN273068:0:Tyes---0
TTHE262724:1:Tyes--00
TTHE300852:2:Tyes--00
TTUR377629:0:Tyes701-
TWHI203267:0:Tyes---0
TWHI218496:0:Tno---0
VCHO:0:Tyes60--
VCHO:1:Fyes---0
VCHO345073:0:Tno---0
VCHO345073:1:Tno60--
VEIS391735:1:Tyes076-
VFIS312309:2:Tyes60--
VPAR223926:1:Tyes06--
VVUL196600:2:Tyes06--
VVUL216895:1:Tno60--
WPIP80849:0:Tyes0---
XAUT78245:1:Tyes152510-
XAXO190486:0:Tyes0655
XCAM190485:0:Tyes5005065050
XCAM314565:0:Tno3285327932800
XCAM316273:0:Tno0753362
XCAM487884:0:Tno3429342334240
XFAS160492:2:Tno065-
XFAS183190:1:Tyes601-
XFAS405440:0:Tno601-
XORY291331:0:Tno3527-35220
XORY342109:0:Tyes3332332633270
XORY360094:0:Tno012107651
YENT393305:1:Tyes0762452
YPES187410:5:Tno7011
YPES214092:3:Tno0766
YPES349746:2:Tno7011
YPES360102:3:Tyes7011
YPES377628:2:Tno0766
YPES386656:2:Tno7011
YPSE273123:2:Tno0766
YPSE349747:2:Tno7011
ZMOB264203:0:Tyes0---



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