CANDIDATE ID: 408

CANDIDATE ID: 408

NUMBER OF GENES: 4
AVERAGE SCORE:    9.9964317e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    5.0000000e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG11405 (cydD) (b0887)
   Products of gene:
     - CYDD-MONOMER (CydD)
     - ABC-6-CPLX (glutathione ABC transporter CydDC)
       Reactions:
        L-cysteine[cytosol] + ATP + H2O  ->  L-cysteine[periplasmic space] + ADP + phosphate
        glutathione[cytosol] + ATP + H2O  ->  glutathione[periplasmic space] + ADP + phosphate

- EG11379 (appB) (b0979)
   Products of gene:
     - APPB-MONOMER (cytochrome bd-II terminal oxidase subunit II)
     - APP-UBIOX-CPLX (cytochrome bd-II terminal oxidase)
       Reactions:
        2 a ubiquinol + oxygen + 4 H+  ->  2 a ubiquinone + 2 H2O + 4 H+[periplasmic space]
         In pathways
         PWY0-1334 (NADH to cytochrome bd oxidase electron transfer)
         PWY0-1353 (succinate to cytochrome bd oxidase electron transfer)

- EG10174 (cydB) (b0734)
   Products of gene:
     - CYDB-MONOMER (cytochrome bd-I terminal oxidase subunit II)
     - CYT-D-UBIOX-CPLX (cytochrome bd-I terminal oxidase)
       Reactions:
        2 a ubiquinol + oxygen + 4 H+  ->  2 a ubiquinone + 2 H2O + 4 H+[periplasmic space]
         In pathways
         PWY0-1334 (NADH to cytochrome bd oxidase electron transfer)
         PWY0-1353 (succinate to cytochrome bd oxidase electron transfer)

- EG10012 (cydC) (b0886)
   Products of gene:
     - CYDC-MONOMER (CydC)
     - ABC-6-CPLX (glutathione ABC transporter CydDC)
       Reactions:
        L-cysteine[cytosol] + ATP + H2O  ->  L-cysteine[periplasmic space] + ADP + phosphate
        glutathione[cytosol] + ATP + H2O  ->  glutathione[periplasmic space] + ADP + phosphate



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ORGANISMS CONTAINING AT LEAST 3 GENES FROM THE GROUP:

Total number of orgs: 247
Effective number of orgs (counting one per cluster within 468 clusters): 169

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317584
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329534
YPES386656 ncbi Yersinia pestis Pestoides F4
YPES377628 ncbi Yersinia pestis Nepal5164
YPES360102 ncbi Yersinia pestis Antiqua4
YPES349746 ncbi Yersinia pestis Angola4
YPES214092 ncbi Yersinia pestis CO924
YPES187410 ncbi Yersinia pestis KIM 104
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80814
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110184
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103314
XCAM487884 Xanthomonas campestris pv. paulliniae4
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-104
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80044
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339134
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3064
XAUT78245 ncbi Xanthobacter autotrophicus Py23
VVUL216895 ncbi Vibrio vulnificus CMCP64
VVUL196600 ncbi Vibrio vulnificus YJ0164
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106334
VFIS312309 ncbi Vibrio fischeri ES1144
VCHO345073 ncbi Vibrio cholerae O3954
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169614
TTUR377629 ncbi Teredinibacter turnerae T79014
TFUS269800 ncbi Thermobifida fusca YX4
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT24
STRO369723 ncbi Salinispora tropica CNB-4404
STHE292459 ncbi Symbiobacterium thermophilum IAM 148634
SSP94122 ncbi Shewanella sp. ANA-34
SSP644076 Silicibacter sp. TrichCH4B4
SSON300269 ncbi Shigella sonnei Ss0464
SSED425104 ncbi Shewanella sediminis HAW-EB34
SPRO399741 ncbi Serratia proteamaculans 5684
SPEA398579 ncbi Shewanella pealeana ATCC 7003454
SONE211586 ncbi Shewanella oneidensis MR-14
SMEL266834 ncbi Sinorhizobium meliloti 10214
SMED366394 ncbi Sinorhizobium medicae WSM4193
SLOI323850 ncbi Shewanella loihica PV-44
SHIGELLA ncbi Shigella flexneri 2a str. 2457T4
SHAL458817 ncbi Shewanella halifaxensis HAW-EB44
SGLO343509 ncbi Sodalis glossinidius morsitans4
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB3
SFLE373384 ncbi Shigella flexneri 5 str. 84014
SFLE198214 ncbi Shigella flexneri 2a str. 3014
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23384
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4764
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B674
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91504
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT184
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty24
SDYS300267 ncbi Shigella dysenteriae Sd1974
SDEN318161 ncbi Shewanella denitrificans OS2174
SCO ncbi Streptomyces coelicolor A3(2)4
SBOY300268 ncbi Shigella boydii Sb2274
SBAL402882 ncbi Shewanella baltica OS1854
SBAL399599 ncbi Shewanella baltica OS1954
SAVE227882 ncbi Streptomyces avermitilis MA-46804
SARE391037 ncbi Salinispora arenicola CNS-2054
SAGA211110 ncbi Streptococcus agalactiae NEM3164
SAGA208435 ncbi Streptococcus agalactiae 2603V/R4
SAGA205921 ncbi Streptococcus agalactiae A9094
SACI56780 ncbi Syntrophus aciditrophicus SB3
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170253
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170294
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.14
RSP101510 ncbi Rhodococcus jostii RHA14
RSOL267608 ncbi Ralstonia solanacearum GMI10003
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332093
RPAL316058 ncbi Rhodopseudomonas palustris HaA24
RPAL316057 ncbi Rhodopseudomonas palustris BisB53
RPAL316056 ncbi Rhodopseudomonas palustris BisB183
RPAL316055 ncbi Rhodopseudomonas palustris BisA533
RPAL258594 ncbi Rhodopseudomonas palustris CGA0093
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38414
RFER338969 ncbi Rhodoferax ferrireducens T1183
RDEN375451 ncbi Roseobacter denitrificans OCh 1144
RBEL391896 ncbi Rickettsia bellii OSU 85-3893
RBEL336407 ncbi Rickettsia bellii RML369-C3
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a3
PSP56811 Psychrobacter sp.3
PPRO298386 ncbi Photobacterium profundum SS94
PMUL272843 ncbi Pasteurella multocida multocida Pm704
PLUT319225 ncbi Chlorobium luteolum DSM 2734
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO14
PING357804 ncbi Psychromonas ingrahamii 374
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1254
PFLU205922 ncbi Pseudomonas fluorescens Pf0-13
PENT384676 ncbi Pseudomonas entomophila L483
PATL342610 ncbi Pseudoalteromonas atlantica T6c4
PACN267747 ncbi Propionibacterium acnes KPA1712024
OCAR504832 ncbi Oligotropha carboxidovorans OM54
OANT439375 ncbi Ochrobactrum anthropi ATCC 491884
NSP35761 Nocardioides sp.4
NFAR247156 ncbi Nocardia farcinica IFM 101524
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra3
MTUB336982 ncbi Mycobacterium tuberculosis F113
MTHE264732 ncbi Moorella thermoacetica ATCC 390734
MTBRV ncbi Mycobacterium tuberculosis H37Rv3
MTBCDC ncbi Mycobacterium tuberculosis CDC15513
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E4
MSP409 Methylobacterium sp.3
MSP400668 ncbi Marinomonas sp. MWYL13
MSP189918 ncbi Mycobacterium sp. KMS3
MSP164757 ncbi Mycobacterium sp. JLS3
MSP164756 ncbi Mycobacterium sp. MCS3
MSME246196 ncbi Mycobacterium smegmatis MC2 1553
MEXT419610 ncbi Methylobacterium extorquens PA13
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P23
MBOV233413 ncbi Mycobacterium bovis AF2122/973
MAVI243243 ncbi Mycobacterium avium 1043
MAQU351348 ncbi Marinobacter aquaeolei VT84
MACE188937 ncbi Methanosarcina acetivorans C2A4
MABS561007 ncbi Mycobacterium abscessus ATCC 199773
LXYL281090 ncbi Leifsonia xyli xyli CTCB074
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53344
LREU557436 ncbi Lactobacillus reuteri DSM 200164
LPNE400673 ncbi Legionella pneumophila Corby3
LPNE297246 ncbi Legionella pneumophila Paris3
LPNE297245 ncbi Legionella pneumophila Lens3
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 13
LPLA220668 ncbi Lactobacillus plantarum WCFS14
LMON265669 ncbi Listeria monocytogenes 4b F23654
LMON169963 ncbi Listeria monocytogenes EGD-e4
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82933
LLAC272623 ncbi Lactococcus lactis lactis Il14034
LLAC272622 ncbi Lactococcus lactis cremoris SK114
LJOH257314 ncbi Lactobacillus johnsonii NCC 5334
LINN272626 ncbi Listeria innocua Clip112624
LGAS324831 ncbi Lactobacillus gasseri ATCC 333233
LCAS321967 ncbi Lactobacillus casei ATCC 3344
LBRE387344 ncbi Lactobacillus brevis ATCC 3674
KRAD266940 ncbi Kineococcus radiotolerans SRS302163
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785784
JSP375286 ncbi Janthinobacterium sp. Marseille4
ILOI283942 ncbi Idiomarina loihiensis L2TR3
HSOM228400 ncbi Haemophilus somnus 23364
HSOM205914 ncbi Haemophilus somnus 129PT4
HNEP81032 Hyphomonas neptunium3
HINF71421 ncbi Haemophilus influenzae Rd KW204
HINF374930 ncbi Haemophilus influenzae PittEE4
HINF281310 ncbi Haemophilus influenzae 86-028NP4
HHAL349124 ncbi Halorhodospira halophila SL13
HDUC233412 ncbi Haemophilus ducreyi 35000HP4
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237794
HARS204773 ncbi Herminiimonas arsenicoxydans4
GVIO251221 ncbi Gloeobacter violaceus PCC 74214
GSUL243231 ncbi Geobacter sulfurreducens PCA4
GMET269799 ncbi Geobacter metallireducens GS-154
GBET391165 ncbi Granulibacter bethesdensis CGDNIH14
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-004
FTUL418136 ncbi Francisella tularensis tularensis WY96-34184
FTUL401614 ncbi Francisella novicida U1124
FTUL393115 ncbi Francisella tularensis tularensis FSC1984
FTUL393011 ncbi Francisella tularensis holarctica OSU184
FTUL351581 Francisella tularensis holarctica FSC2004
FRANT ncbi Francisella tularensis tularensis SCHU S44
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250174
ESP42895 Enterobacter sp.4
EFER585054 ncbi Escherichia fergusonii ATCC 354694
EFAE226185 ncbi Enterococcus faecalis V5834
ECOO157 ncbi Escherichia coli O157:H7 EDL9334
ECOL83334 Escherichia coli O157:H74
ECOL585397 ncbi Escherichia coli ED1a4
ECOL585057 ncbi Escherichia coli IAI394
ECOL585056 ncbi Escherichia coli UMN0264
ECOL585055 ncbi Escherichia coli 559894
ECOL585035 ncbi Escherichia coli S884
ECOL585034 ncbi Escherichia coli IAI14
ECOL481805 ncbi Escherichia coli ATCC 87394
ECOL469008 ncbi Escherichia coli BL21(DE3)4
ECOL439855 ncbi Escherichia coli SMS-3-54
ECOL413997 ncbi Escherichia coli B str. REL6064
ECOL409438 ncbi Escherichia coli SE114
ECOL405955 ncbi Escherichia coli APEC O14
ECOL364106 ncbi Escherichia coli UTI894
ECOL362663 ncbi Escherichia coli 5364
ECOL331111 ncbi Escherichia coli E24377A4
ECOL316407 ncbi Escherichia coli K-12 substr. W31104
ECOL199310 ncbi Escherichia coli CFT0734
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10434
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough3
DRED349161 ncbi Desulfotomaculum reducens MI-14
DOLE96561 ncbi Desulfococcus oleovorans Hxd33
DNOD246195 ncbi Dichelobacter nodosus VCS1703A4
DHAF138119 ncbi Desulfitobacterium hafniense Y514
DGEO319795 ncbi Deinococcus geothermalis DSM 113003
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G203
CTEP194439 ncbi Chlorobium tepidum TLS4
CSP78 Caulobacter sp.3
CSP501479 Citreicella sp. SE454
CSAL290398 ncbi Chromohalobacter salexigens DSM 30434
CPSY167879 ncbi Colwellia psychrerythraea 34H4
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3824
CMIC31964 ncbi Clavibacter michiganensis sepedonicus4
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29014
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130323
CEFF196164 ncbi Corynebacterium efficiens YS-3143
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131293
CAULO ncbi Caulobacter crescentus CB153
BWEI315730 ncbi Bacillus weihenstephanensis KBAB44
BTHU412694 ncbi Bacillus thuringiensis Al Hakam4
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-274
BSUI470137 ncbi Brucella suis ATCC 234454
BSUI204722 ncbi Brucella suis 13304
BSUB ncbi Bacillus subtilis subtilis 1684
BSP376 Bradyrhizobium sp.3
BSP36773 Burkholderia sp.4
BPUM315750 ncbi Bacillus pumilus SAFR-0324
BPET94624 Bordetella petrii4
BPER257313 ncbi Bordetella pertussis Tohama I4
BPAR257311 ncbi Bordetella parapertussis 128224
BOVI236 Brucella ovis4
BMEL359391 ncbi Brucella melitensis biovar Abortus 23084
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M4
BLIC279010 ncbi Bacillus licheniformis ATCC 145804
BCER572264 ncbi Bacillus cereus 03BB1024
BCER405917 Bacillus cereus W4
BCER288681 ncbi Bacillus cereus E33L4
BCER226900 ncbi Bacillus cereus ATCC 145794
BCEN331272 ncbi Burkholderia cenocepacia HI24244
BCEN331271 ncbi Burkholderia cenocepacia AU 10544
BCAN483179 ncbi Brucella canis ATCC 233654
BBRO257310 ncbi Bordetella bronchiseptica RB504
BANT592021 ncbi Bacillus anthracis A02484
BANT568206 ncbi Bacillus anthracis CDC 6844
BANT261594 ncbi Bacillus anthracis Ames Ancestor4
BANT260799 ncbi Bacillus anthracis Sterne4
BAMY326423 ncbi Bacillus amyloliquefaciens FZB424
BAMB339670 ncbi Burkholderia ambifaria AMMD4
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9414
ASP76114 ncbi Aromatoleum aromaticum EbN13
ASP62928 ncbi Azoarcus sp. BH723
ASP1667 Arthrobacter sp.3
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4494
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL034
APLE416269 ncbi Actinobacillus pleuropneumoniae L204
ANAE240017 Actinomyces oris MG14
AHYD196024 Aeromonas hydrophila dhakensis4
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232704
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-14
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C3
ACRY349163 ncbi Acidiphilium cryptum JF-54
ACEL351607 ncbi Acidothermus cellulolyticus 11B3
ACAU438753 ncbi Azorhizobium caulinodans ORS 5714
ABAU360910 ncbi Bordetella avium 197N4
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3453
AAUR290340 ncbi Arthrobacter aurescens TC13


Names of the homologs of the genes in the group in each of these orgs
  EG11405   EG11379   EG10174   EG10012   
YPSE349747 YPSIP31758_2600YPSIP31758_2875YPSIP31758_2875YPSIP31758_2601
YPSE273123 YPTB1398YPTB1152YPTB1152YPTB1397
YPES386656 YPDSF_2322YPDSF_2578YPDSF_2578YPDSF_2323
YPES377628 YPN_2607YPN_2880YPN_2880YPN_2608
YPES360102 YPA_0663YPA_0596YPA_0596YPA_0662
YPES349746 YPANGOLA_A1607YPANGOLA_A1389YPANGOLA_A1389YPANGOLA_A1606
YPES214092 YPO1373YPO1118YPO1118YPO1372
YPES187410 Y2803Y3062Y3062Y2805
YENT393305 YE1522YE2938YE2938YE1521
XORY342109 XOO2504XOO0588XOO0588XOO2503
XORY291331 XOO2654XOO0638XOO0638XOO2653
XCAM487884 XCC-B100_1949XCC-B100_1947XCC-B100_1947XCC-B100_1950
XCAM316273 XCAORF_2500XCAORF_2502XCAORF_2502XCAORF_2499
XCAM314565 XC_1886XC_1884XC_1884XC_1887
XCAM190485 XCC2231XCC2233XCC2233XCC2230
XAXO190486 XAC2335XAC2337XAC2337XAC2334
XAUT78245 XAUT_2458XAUT_1267XAUT_2459
VVUL216895 VV1_2811VV1_2163VV1_2163VV1_2812
VVUL196600 VV1454VV2282VV2282VV1453
VPAR223926 VP1250VP1054VP1054VP1249
VFIS312309 VF0901VF0954VF0954VF0900
VCHO345073 VC0395_A0802VC0395_A1434VC0395_A1434VC0395_A0801
VCHO VC1181VC1843VC1843VC1180
TTUR377629 TERTU_4033TERTU_4035TERTU_4035TERTU_0436
TFUS269800 TFU_0636TFU_0637TFU_0637TFU_0635
STYP99287 STM0957STM1793STM0741STM0956
STRO369723 STROP_0823STROP_2338STROP_2338STROP_0822
STHE292459 STH2723STH643STH643STH3278
SSP94122 SHEWANA3_0812SHEWANA3_1242SHEWANA3_1242SHEWANA3_0813
SSP644076 SCH4B_1748SCH4B_3810SCH4B_3810SCH4B_1941
SSON300269 SSO_0888SSO_0985SSO_0686SSO_0887
SSED425104 SSED_3849SSED_3117SSED_3117SSED_3848
SPRO399741 SPRO_1678SPRO_1272SPRO_1272SPRO_1677
SPEA398579 SPEA_3494SPEA_1319SPEA_1319SPEA_3493
SONE211586 SO_3780SO_3285SO_3285SO_3779
SMEL266834 SMB20813SMC02254SMC02254SMC03991
SMED366394 SMED_5011SMED_0170SMED_2662
SLOI323850 SHEW_0613SHEW_1303SHEW_1303SHEW_0614
SHIGELLA CYDDAPPBCYDBCYDC
SHAL458817 SHAL_3589SHAL_1382SHAL_1382SHAL_3588
SGLO343509 SG1105SG0881SG0881SG1104
SFUM335543 SFUM_1390SFUM_0338SFUM_0338
SFLE373384 SFV_0878SFV_0988SFV_0602SFV_0877
SFLE198214 AAN42479.1AAN42609.1AAN42207.1AAN42478.1
SERY405948 SACE_0144SACE_0143SACE_0143SACE_0056
SENT454169 SEHA_C1056SEHA_C1991SEHA_C0868SEHA_C1055
SENT321314 SCH_0911SCH_0745SCH_0745SCH_0910
SENT295319 SPA1841SPA1080SPA2002SPA1842
SENT220341 STY0955STY1921STY0787STY0954
SENT209261 T1977T1083T2135T1978
SDYS300267 SDY_2374SDY_0954SDY_0681SDY_2375
SDEN318161 SDEN_0860SDEN_1275SDEN_1275SDEN_0859
SCO SCO3947SCO3946SCO3946SCO3947
SBOY300268 SBO_0820SBO_2252SBO_0593SBO_0819
SBAL402882 SHEW185_0873SHEW185_2992SHEW185_2992SHEW185_0874
SBAL399599 SBAL195_0908SBAL195_3136SBAL195_3136SBAL195_0909
SAVE227882 SAV4258SAV4259SAV4259SAV4258
SARE391037 SARE_0767SARE_2481SARE_2481SARE_0766
SAGA211110 GBS1785GBS1786GBS1786GBS1784
SAGA208435 SAG_1740SAG_1741SAG_1741SAG_1739
SAGA205921 SAK_1748SAK_1749SAK_1749SAK_1747
SACI56780 SYN_01975SYN_01975SYN_01564
RSPH349102 RSPH17025_3932RSPH17025_3857RSPH17025_3857
RSPH349101 RSPH17029_3808RSPH17029_3951RSPH17029_3951RSPH17029_0928
RSPH272943 RSP_3081RSP_3210RSP_3210RSP_2254
RSP101510 RHA1_RO04849RHA1_RO04848RHA1_RO04848RHA1_RO04958
RSOL267608 RSC1808RSP1206RSP1206
RSAL288705 RSAL33209_2811RSAL33209_2419RSAL33209_2419
RPAL316058 RPB_0931RPB_0930RPB_0930RPB_0932
RPAL316057 RPD_4379RPD_4379RPD_4342
RPAL316056 RPC_0091RPC_0091RPC_0797
RPAL316055 RPE_0538RPE_0538RPE_0664
RPAL258594 RPA4794RPA4794RPA0919
RLEG216596 PRL90276PRL90279PRL90279PRL90277
RFER338969 RFER_2363RFER_2363RFER_3493
RDEN375451 RD1_1749RD1_0794RD1_0794RD1_1973
RBEL391896 A1I_06490A1I_06490A1I_02845
RBEL336407 RBE_0262RBE_0262RBE_0492
PSYR205918 PSYR_4281PSYR_4281PSYR_1830
PSP56811 PSYCPRWF_0326PSYCPRWF_0328PSYCPRWF_0328
PPRO298386 PBPRA1158PBPRA2557PBPRA2557PBPRA1157
PMUL272843 PM0572PM0973PM0973PM0571
PLUT319225 PLUT_0473PLUT_0474PLUT_0474PLUT_0472
PLUM243265 PLU1598PLU1450PLU1450PLU1597
PING357804 PING_3454PING_0721PING_0721PING_3453
PHAL326442 PSHAA2021PSHAA2019PSHAA2019PSHAA2022
PFLU205922 PFL_3385PFL_4892PFL_3884
PENT384676 PSEEN2497PSEEN2411PSEEN4776
PATL342610 PATL_1455PATL_1453PATL_1453PATL_1456
PACN267747 PPA0174PPA0175PPA0175PPA0784
OCAR504832 OCAR_6514OCAR_4638OCAR_4638OCAR_7320
OANT439375 OANT_3539OANT_3542OANT_3542OANT_3540
NSP35761 NOCA_1227NOCA_0943NOCA_0943NOCA_0944
NFAR247156 NFA5870NFA5860NFA5860NFA7520
MTUB419947 MRA_1631MRA_1632MRA_1632
MTUB336982 TBFG_11637TBFG_11638TBFG_11638
MTHE264732 MOTH_2097MOTH_2096MOTH_2096MOTH_2098
MTBRV RV1621CRV1622CRV1622C
MTBCDC MT1657MT1658MT1658
MSUC221988 MS0950MS0716MS0716MS0949
MSP409 M446_4324M446_4324M446_4330
MSP400668 MMWYL1_1508MMWYL1_1506MMWYL1_1506
MSP189918 MKMS_3097MKMS_3096MKMS_3096
MSP164757 MJLS_3054MJLS_3053MJLS_3053
MSP164756 MMCS_3038MMCS_3037MMCS_3037
MSME246196 MSMEG_5659MSMEG_3232MSMEG_3232
MEXT419610 MEXT_1361MEXT_1361MEXT_2356
MBOV410289 BCG_1659CBCG_1660CBCG_1660C
MBOV233413 MB1647CMB1648CMB1648C
MAVI243243 MAV_3166MAV_3165MAV_3165
MAQU351348 MAQU_1465MAQU_1464MAQU_1464MAQU_1466
MACE188937 MA2472MA1007MA1007MA2473
MABS561007 MAB_2632MAB_2631MAB_2631
LXYL281090 LXX12330LXX12320LXX12320LXX12340
LWEL386043 LWE2668LWE2669LWE2669LWE2667
LREU557436 LREU_0507LREU_0506LREU_0506LREU_0508
LPNE400673 LPC_1263LPC_0671LPC_0671
LPNE297246 LPP1782LPP1205LPP1205
LPNE297245 LPL1783LPL1211LPL1211
LPNE272624 LPG1819LPG1203LPG1203
LPLA220668 LP_1128LP_1126LP_1126LP_1129
LMON265669 LMOF2365_2696LMOF2365_2697LMOF2365_2697LMOF2365_2695
LMON169963 LMO2716LMO2717LMO2717LMO2715
LMES203120 LEUM_0562LEUM_0561LEUM_0561
LLAC272623 L110479L109201L109201L112352
LLAC272622 LACR_0739LACR_0738LACR_0738LACR_0740
LJOH257314 LJ_1812LJ_1811LJ_1811LJ_1813
LINN272626 LIN2864LIN2865LIN2865LIN2863
LGAS324831 LGAS_1842LGAS_1842LGAS_1844
LCAS321967 LSEI_2203LSEI_2204LSEI_2204LSEI_2202
LBRE387344 LVIS_1640LVIS_1641LVIS_1641LVIS_1639
KRAD266940 KRAD_3822KRAD_1641KRAD_4487
KPNE272620 GKPORF_B5359GKPORF_B5166GKPORF_B5166GKPORF_B5358
JSP375286 MMA_2016MMA_2013MMA_2013MMA_2015
ILOI283942 IL0042IL0042IL1513
HSOM228400 HSM_1027HSM_0130HSM_0130HSM_1026
HSOM205914 HS_1149HS_0257HS_0257HS_1150
HNEP81032 HNE_1660HNE_1658HNE_1658
HINF71421 HI_1157HI_1075HI_1075HI_1156
HINF374930 CGSHIEE_06255CGSHIEE_06705CGSHIEE_06705CGSHIEE_06260
HINF281310 NTHI1326NTHI1235NTHI1235NTHI1325
HHAL349124 HHAL_2418HHAL_2419HHAL_2417
HDUC233412 HD_1652HD_1781HD_1781HD_1651
HAUR316274 HAUR_3757HAUR_3758HAUR_3758HAUR_4595
HARS204773 HEAR1372HEAR1375HEAR1375HEAR1373
GVIO251221 GLR1300GLL1196GLL1196GLR1301
GSUL243231 GSU_1215GSU_1641GSU_1641GSU_1216
GMET269799 GMET_2634GMET_1929GMET_1929GMET_2633
GBET391165 GBCGDNIH1_0874GBCGDNIH1_0137GBCGDNIH1_0137GBCGDNIH1_0875
FTUL458234 FTA_1580FTA_0203FTA_0203FTA_1581
FTUL418136 FTW_1501FTW_1808FTW_1808FTW_1502
FTUL401614 FTN_0642FTN_0192FTN_0192FTN_0641
FTUL393115 FTF1335FTF0278CFTF0278CFTF1336
FTUL393011 FTH_1450FTH_0183FTH_0183FTH_1451
FTUL351581 FTL_1495FTL_0188FTL_0188FTL_1496
FRANT CYDDCYDBCYDBCYDC
FPHI484022 FPHI_0179FPHI_0634FPHI_0634FPHI_0180
ESP42895 ENT638_1411ENT638_1231ENT638_1231ENT638_1410
EFER585054 EFER_1035EFER_1186EFER_2370EFER_1034
EFAE226185 EF_2059EF_2060EF_2060EF_2058
ECOO157 CYDDAPPBCYDBCYDC
ECOL83334 ECS0972ECS1135ECS0769ECS0971
ECOL585397 ECED1_0861ECED1_1063ECED1_0701ECED1_0860
ECOL585057 ECIAI39_2263ECIAI39_2167ECIAI39_0709ECIAI39_2264
ECOL585056 ECUMN_1082ECUMN_1169ECUMN_0822ECUMN_1081
ECOL585055 EC55989_0932EC55989_1087EC55989_0719EC55989_0931
ECOL585035 ECS88_0916ECS88_1001ECS88_0757ECS88_0915
ECOL585034 ECIAI1_0927ECIAI1_1020ECIAI1_0709ECIAI1_0926
ECOL481805 ECOLC_2709ECOLC_2617ECOLC_2922ECOLC_2710
ECOL469008 ECBD_2708ECBD_2616ECBD_2927ECBD_2709
ECOL439855 ECSMS35_2234ECSMS35_2138ECSMS35_0756ECSMS35_2235
ECOL413997 ECB_00891ECB_00982ECB_00693ECB_00890
ECOL409438 ECSE_0945ECSE_1041ECSE_0794ECSE_0944
ECOL405955 APECO1_1202APECO1_83APECO1_83APECO1_1203
ECOL364106 UTI89_C0902UTI89_C1047UTI89_C0729UTI89_C0901
ECOL362663 ECP_0901ECP_0984ECP_0744ECP_0900
ECOL331111 ECE24377A_0960ECE24377A_1094ECE24377A_0762ECE24377A_0959
ECOL316407 ECK0878:JW0870:B0887ECK0970:JW0961:B0979ECK0722:JW0723:B0734ECK0877:JW0869:B0886
ECOL199310 C1024C1120C0812C1023
ECAR218491 ECA2650ECA1366ECA2999ECA2651
DVUL882 DVU_3270DVU_3270DVU_1671
DRED349161 DRED_1641DRED_1640DRED_1640DRED_1642
DOLE96561 DOLE_3227DOLE_2650DOLE_2650
DNOD246195 DNO_0102DNO_0099DNO_0099DNO_0101
DHAF138119 DSY4054DSY4055DSY4055DSY4053
DGEO319795 DGEO_2707DGEO_2704DGEO_2704
DDES207559 DDE_1602DDE_3205DDE_3205
CTEP194439 CT_1821CT_1819CT_1819CT_1822
CSP78 CAUL_0633CAUL_0635CAUL_0635
CSP501479 CSE45_3785CSE45_3788CSE45_3788CSE45_3786
CSAL290398 CSAL_1999CSAL_2000CSAL_2000CSAL_1998
CPSY167879 CPS_1879CPS_1877CPS_1877CPS_1880
CMIC443906 CMM_1543CMM_1542CMM_1542CMM_1544
CMIC31964 CMS1764CMS1766CMS1766CMS1763
CHYD246194 CHY_2443CHY_2444CHY_2444CHY_2442
CGLU196627 CG1299CG1300CG1300
CEFF196164 CE1251CE1252CE1252
CDIP257309 DIP2159DIP1899DIP1899
CAULO CC0761CC0763CC0763
BWEI315730 BCERKBAB4_1811BCERKBAB4_4630BCERKBAB4_1810BCERKBAB4_1812
BTHU412694 BALH_1724BALH_4364BALH_4364BALH_1725
BTHU281309 BT9727_1779BT9727_4529BT9727_4529BT9727_1780
BSUI470137 BSUIS_B0505BSUIS_B0508BSUIS_B0508BSUIS_B0506
BSUI204722 BR_A0508BR_A0511BR_A0511BR_A0509
BSUB BSU38740BSU38750BSU38750BSU38730
BSP376 BRADO6836BRADO6836BRADO1107
BSP36773 BCEP18194_B1962BCEP18194_A6148BCEP18194_A6148BCEP18194_B1962
BPUM315750 BPUM_3517BPUM_3518BPUM_3518BPUM_3516
BPET94624 BPET0459BPET0457BPET0457BPET0460
BPER257313 BP0262BP0260BP0260BP0263
BPAR257311 BPP4022BPP4024BPP4024BPP4021
BOVI236 GBOORFA0492GBOORFA0495GBOORFA0495GBOORFA0493
BMEL359391 BAB2_0730BAB2_0727BAB2_0727BAB2_0729
BMEL224914 BMEII0762BMEII0759BMEII0759BMEII0761
BLIC279010 BL00925BL00924BL00924BL00926
BCER572264 BCA_2011BCA_4926BCA_4926BCA_2012
BCER405917 BCE_2023BCE_4950BCE_4950BCE_2024
BCER288681 BCE33L1762BCE33L4548BCE33L4548BCE33L1763
BCER226900 BC_1940BC_4793BC_4793BC_1941
BCEN331272 BCEN2424_4081BCEN2424_2818BCEN2424_2818BCEN2424_4081
BCEN331271 BCEN_4285BCEN_2204BCEN_2204BCEN_4285
BCAN483179 BCAN_B0507BCAN_B0511BCAN_B0511BCAN_B0508
BBRO257310 BB4495BB4497BB4497BB4494
BANT592021 BAA_2014BAA_5062BAA_5062BAA_2015
BANT568206 BAMEG_2646BAMEG_5085BAMEG_5085BAMEG_2645
BANT261594 GBAA1945GBAA5051GBAA5051GBAA1946
BANT260799 BAS1805BAS4691BAS4691BAS1806
BAMY326423 RBAM_035990RBAM_036000RBAM_036000RBAM_035980
BAMB339670 BAMB_3493BAMB_2878BAMB_2878BAMB_3493
BABO262698 BRUAB2_0714BRUAB2_0711BRUAB2_0711BRUAB2_0713
ASP76114 EBA3992EBA4638EBA4638
ASP62928 AZO3572AZO1231AZO1231
ASP1667 ARTH_1624ARTH_1623ARTH_1623
ASAL382245 ASA_3050ASA_0738ASA_0738ASA_3051
APLE434271 APJL_0834APJL_0309APJL_0309APJL_0833
APLE416269 APL_0827APL_0298APL_0298APL_0826
ANAE240017 ANA_0459ANA_0460ANA_0460ANA_1367
AHYD196024 AHA_3029AHA_3645AHA_3645AHA_3030
AFER243159 AFE_1693AFE_2093AFE_2093AFE_1692
AEHR187272 MLG_1643MLG_2044MLG_2044MLG_1644
ADEH290397 ADEH_1067ADEH_3731ADEH_3731
ACRY349163 ACRY_1637ACRY_1634ACRY_1634ACRY_1636
ACEL351607 ACEL_0598ACEL_0599ACEL_0599
ACAU438753 AZC_0582AZC_0585AZC_0585AZC_0583
ABAU360910 BAV3108BAV3110BAV3110BAV3107
ABAC204669 ACID345_2371ACID345_3251ACID345_3251
AAUR290340 AAUR_3379AAUR_1769AAUR_1769


Organism features enriched in list (features available for 228 out of the 247 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Singles 0.0037974126286
Disease:Brucellosis 0.008904855
Disease:Bubonic_plague 0.003435666
Disease:Dysentery 0.003435666
Disease:Gastroenteritis 0.00501911013
Disease:Tularemia 0.008904855
Endospores:No 2.250e-657211
GC_Content_Range4:0-40 3.456e-1245213
GC_Content_Range4:40-60 8.621e-6112224
GC_Content_Range4:60-100 0.001601271145
GC_Content_Range7:30-40 0.000057745166
GC_Content_Range7:50-60 1.010e-766107
GC_Content_Range7:60-70 0.008342363134
Genome_Size_Range5:0-2 5.294e-1917155
Genome_Size_Range5:4-6 1.451e-24128184
Genome_Size_Range9:1-2 6.873e-1317128
Genome_Size_Range9:2-3 0.000054429120
Genome_Size_Range9:4-5 2.382e-76096
Genome_Size_Range9:5-6 2.385e-156888
Gram_Stain:Gram_Neg 0.0006480148333
Habitat:Multiple 0.000069190178
Habitat:Specialized 4.695e-7553
Motility:No 0.003073746151
Motility:Yes 0.0047085118267
Optimal_temp.:25-35 0.00003521314
Oxygen_Req:Anaerobic 2.469e-620102
Oxygen_Req:Facultative 1.839e-11116201
Shape:Coccus 8.914e-61582
Shape:Irregular_coccus 0.0021329117
Shape:Rod 3.570e-19186347
Shape:Spiral 5.940e-7134
Temp._range:Hyperthermophilic 0.0001308123
Temp._range:Mesophilic 4.153e-6205473
Temp._range:Thermophilic 0.0007853535



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 280
Effective number of orgs (counting one per cluster within 468 clusters): 235

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VEIS391735 ncbi Verminephrobacter eiseniae EF01-21
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TSP28240 Thermotoga sp.0
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP1148 ncbi Synechocystis sp. PCC 68031
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SRUB309807 ncbi Salinibacter ruber DSM 138551
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SLAC55218 Ruegeria lacuscaerulensis0
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SGOR29390 Streptococcus gordonii Challis1
SDEG203122 ncbi Saccharophagus degradans 2-400
SAUR273036 ncbi Staphylococcus aureus RF1221
SALA317655 ncbi Sphingopyxis alaskensis RB22561
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington1
RRIC452659 ncbi Rickettsia rickettsii Iowa1
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith1
RMAS416276 ncbi Rickettsia massiliae MTU51
REUT381666 ncbi Ralstonia eutropha H161
RETL347834 ncbi Rhizobium etli CFN 421
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP296591 ncbi Polaromonas sp. JS6660
PRUM264731 ncbi Prevotella ruminicola 230
PPUT351746 ncbi Pseudomonas putida F11
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PNAP365044 ncbi Polaromonas naphthalenivorans CJ20
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K51
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-41
PAER208964 ncbi Pseudomonas aeruginosa PAO11
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP103690 ncbi Nostoc sp. PCC 71201
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X141
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
MXAN246197 ncbi Myxococcus xanthus DK 16221
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS101
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLOT266835 ncbi Mesorhizobium loti MAFF3030991
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT1
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCHO395495 ncbi Leptothrix cholodnii SP-60
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
JSP290400 ncbi Jannaschia sp. CCS11
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-20
GKAU235909 ncbi Geobacillus kaustophilus HTA4261
GFOR411154 ncbi Gramella forsetii KT08031
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI31
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293281
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25941
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DRAD243230 ncbi Deinococcus radiodurans R10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DARO159087 ncbi Dechloromonas aromatica RCB0
CVIO243365 ncbi Chromobacterium violaceum ATCC 124721
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus1
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CDIF272563 ncbi Clostridium difficile 6300
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCAV227941 ncbi Chlamydophila caviae GPIC1
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80520
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054761
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse1
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-11
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294131
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP232721 ncbi Acidovorax sp. JS420
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs1
AMET293826 ncbi Alkaliphilus metalliredigens QYMF0
AMAR234826 ncbi Anaplasma marginale St. Maries0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
AAVE397945 ncbi Acidovorax citrulli AAC00-10


Names of the homologs of the genes in the group in each of these orgs
  EG11405   EG11379   EG10174   EG10012   
XFAS405440
XFAS183190
XFAS160492
WSUC273121
WPIP80849
VEIS391735 VEIS_2441
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852 TTHA1341
TTHE262724 TT_C0976
TSP28240
TROS309801
TPSE340099
TPET390874
TPEN368408
TPAL243276
TMAR243274
TLET416591
TKOD69014
TERY203124
TDEN326298
TDEN292415
TCRU317025
TACI273075
SWOL335541
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP387093
SSP1148 SLR1380
SSP1131
SSOL273057
SSAP342451 SSP2033
SRUB309807 SRU_2284
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SLAC55218
SHAE279808 SH1095
SGOR29390 SGO_0165
SDEG203122
SAUR273036 SAB0634
SALA317655 SALA_1985
SACI330779
RXYL266117
RTYP257363 RT0208
RRIC452659 RRIOWA_0350
RRIC392021 A1G_01655
RMAS416276 RMA_0297
REUT381666 H16_B1176
RETL347834 RHE_CH03507
RALB246199
RAKA293614
PTOR263820
PTHE370438
PSP312153
PSP296591
PRUM264731
PPUT351746 PPUT_4512
PPEN278197
PNAP365044
PMOB403833
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PISL384616
PINT246198 PIN_A0789
PHOR70601
PGIN242619 PG_1176
PFUR186497
PDIS435591
PCRY335284 PCRYO_1695
PAST100379
PARS340102
PARC259536 PSYC_1516
PAER208964 PA3929
PAER178306
PABY272844
OTSU357244
NSP387092
NSP103690 ALL4023
NSEN222891
NPHA348780 NP0006A
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097 NHAM_3544
NGON242231
NEUT335283
NEUR228410
MXAN246197 MXAN_0748
MTHE349307
MTHE187420
MSYN262723
MSTA339860
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221 MMAR10_1510
MMAR368407
MMAR267377
MMAG342108
MLOT266835 MLL3934
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MGEN243273
MFLO265311
MFLA265072 MFLA_0332
MCAP340047
MBUR259564
MART243272
MAER449447
MAEO419665
LSAK314315
LINT267671
LINT189518
LHEL405566
LDEL390333
LDEL321956
LCHO395495
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
JSP290400 JANN_2914
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HMUK485914
HMAR272569 RRNAC2314
HHEP235279
HBUT415426
HACI382638
GTHE420246
GKAU235909 GK1336
GFOR411154 GFO_2529
FSUC59374 FSU2228
FSP1855 FRANEAN1_3554
FSP106370 FRANCCI3_1034
FNUC190304 FN1819
FNOD381764
FMAG334413 FMG_1070
FALN326424 FRAAL1741
ERUM302409
ERUM254945
ELIT314225 ELI_12075
ECHA205920
ECAN269484
DSP255470
DSP216389
DSHI398580
DRAD243230
DPSY177439
DETH243164
DARO159087
CVIO243365 CV_0630
CVES412965
CTRA471473 CTLON_0264
CTRA471472 CTL0269
CSUL444179
CRUT413404
CPHY357809
CPEL335992
CMUR243161
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CJAP155077 CJA_0141
CHUT269798
CHOM360107
CFET360106
CFEL264202 CF0342
CDIF272563
CDES477974
CCUR360105
CCON360104
CCAV227941 CCA_00669
CBOT536232
CBOT515621
CBOT508765
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CBLO291272
CBLO203907
CBEI290402
CACE272562
BTUR314724
BTRI382640 BT_2411
BTHE226186 BT_0509
BSP107806
BQUI283165 BQ11960
BLON206672 BL0264
BHER314723
BHEN283166 BH15040
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BBUR224326
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AVAR240292 AVA_B0174
AURANTIMONAS
ASP232721
APHA212042
APER272557
AORE350688 CLOS_1180
AMET293826
AMAR234826
AFUL224325
ABUT367737
ABOR393595
AAVE397945


Organism features enriched in list (features available for 263 out of the 280 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.0030921217
Arrangment:Pairs 0.004295439112
Disease:Wide_range_of_infections 0.00014011111
Endospores:No 2.423e-9129211
GC_Content_Range4:0-40 9.505e-12135213
GC_Content_Range4:40-60 0.005647888224
GC_Content_Range4:60-100 1.288e-739145
GC_Content_Range7:0-30 4.690e-104147
GC_Content_Range7:30-40 0.000151794166
GC_Content_Range7:50-60 0.000169232107
GC_Content_Range7:60-70 4.690e-736134
Genome_Size_Range5:0-2 5.006e-27126155
Genome_Size_Range5:4-6 1.340e-1934184
Genome_Size_Range5:6-10 0.00026911047
Genome_Size_Range9:0-1 2.144e-102727
Genome_Size_Range9:1-2 4.154e-1799128
Genome_Size_Range9:4-5 1.828e-62396
Genome_Size_Range9:5-6 1.677e-121188
Genome_Size_Range9:6-8 0.0028367938
Gram_Stain:Gram_Neg 0.0000168126333
Habitat:Aquatic 0.00400185291
Habitat:Multiple 4.081e-656178
Habitat:Specialized 7.875e-63953
Habitat:Terrestrial 0.0047971731
Motility:No 0.009017079151
Motility:Yes 0.0076927108267
Optimal_temp.:25-30 0.0001449119
Optimal_temp.:25-35 0.0023699114
Optimal_temp.:30-37 0.0085552318
Oxygen_Req:Anaerobic 2.733e-769102
Oxygen_Req:Facultative 1.461e-1055201
Oxygen_Req:Microaerophilic 0.00361181418
Pathogenic_in:Animal 0.00004091566
Pathogenic_in:No 0.0082390114226
Salinity:Non-halophilic 0.007808258106
Shape:Coccus 0.00077615082
Shape:Irregular_coccus 0.00002181617
Shape:Rod 1.008e-2398347
Shape:Sphere 4.631e-61819
Shape:Spiral 7.962e-93134
Temp._range:Hyperthermophilic 0.00002612023
Temp._range:Mesophilic 0.0000181194473
Temp._range:Thermophilic 0.00595842335



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY-5148 (acyl-CoA hydrolysis)2271570.4568
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001840.4273
VALDEG-PWY (valine degradation I)2901790.4212
PWY0-1353 (succinate to cytochrome bd oxidase electron transfer)1781260.4026



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11379   EG10174   EG10012   
EG114050.9996150.9996150.999904
EG113790.9999750.999362
EG101740.999388
EG10012



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PAIRWISE BLAST SCORES:

  EG11405   EG11379   EG10174   EG10012   
EG114050.0f0---
EG11379-0.0f01.4e-108-
EG10174-7.5e-1170.0f0-
EG10012---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ABC-6-CPLX (glutathione ABC transporter CydDC) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.500, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9997 0.9994 EG10012 (cydC) CYDC-MONOMER (CydC)
   *in cand* 0.9998 0.9996 EG11405 (cydD) CYDD-MONOMER (CydD)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9994 EG10174 (cydB) CYDB-MONOMER (cytochrome bd-I terminal oxidase subunit II)
   *in cand* 0.9997 0.9994 EG11379 (appB) APPB-MONOMER (cytochrome bd-II terminal oxidase subunit II)

- PWY0-1334 (NADH to cytochrome bd oxidase electron transfer) (degree of match pw to cand: 0.118, degree of match cand to pw: 0.500, average score: 0.831)
  Genes in pathway or complex:
             0.4592 0.2850 EG12083 (nuoB) NUOB-MONOMER (NADH:ubiquinone oxidoreductase, chain B)
             0.3983 0.1915 EG12084 (nuoC) NUOC-MONOMER (NADH:ubiquinone oxidoreductase, chain CD)
             0.3749 0.2135 EG12089 (nuoI) NUOI-MONOMER (NADH:ubiquinone oxidoreductase, chain I)
             0.6561 0.5566 EG12086 (nuoE) NUOE-MONOMER (NADH:ubiquinone oxidoreductase, chain E)
             0.6025 0.4272 EG11774 (nuoF) NUOF-MONOMER (NADH:ubiquinone oxidoreductase, chain F)
             0.5123 0.3903 EG12087 (nuoG) NUOG-MONOMER (NADH:ubiquinone oxidoreductase, chain G)
             0.3552 0.2319 EG12093 (nuoN) NUON-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit N)
             0.4543 0.3405 EG11773 (nuoM) NUOM-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit M)
             0.3408 0.1669 EG12092 (nuoL) NUOL-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit L)
             0.4457 0.2097 EG12091 (nuoK) NUOK-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit K)
             0.4899 0.3740 EG12090 (nuoJ) NUOJ-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit J)
             0.4048 0.3213 EG12088 (nuoH) NUOH-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit H)
             0.4206 0.2809 EG12082 (nuoA) NUOA-MONOMER (NADH:ubiquinone oxidoreductase, membrane subunit A)
   *in cand* 0.9997 0.9994 EG10174 (cydB) CYDB-MONOMER (cytochrome bd-I terminal oxidase subunit II)
             0.9997 0.9993 EG10173 (cydA) CYDA-MONOMER (cytochrome bd-I terminal oxidase subunit I)
   *in cand* 0.9997 0.9994 EG11379 (appB) APPB-MONOMER (cytochrome bd-II terminal oxidase subunit II)
             0.9997 0.9993 EG11380 (appC) APPC-MONOMER (cytochrome bd-II terminal oxidase subunit I)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9994 EG10012 (cydC) CYDC-MONOMER (CydC)
   *in cand* 0.9998 0.9996 EG11405 (cydD) CYDD-MONOMER (CydD)

- PWY0-1353 (succinate to cytochrome bd oxidase electron transfer) (degree of match pw to cand: 0.250, degree of match cand to pw: 0.500, average score: 0.990)
  Genes in pathway or complex:
             0.9553 0.9056 EG10934 (sdhD) SDH-MEMB2 (succinate dehydrogenase membrane protein)
             0.9689 0.9257 EG10933 (sdhC) SDH-MEMB1 (succinate dehydrogenase membrane protein)
             0.9728 0.9421 EG10932 (sdhB) SDH-FE-S (succinate dehydrogenase iron-sulfur protein)
             0.9644 0.9213 EG10931 (sdhA) SDH-FLAVO (succinate dehydrogenase flavoprotein)
   *in cand* 0.9997 0.9994 EG10174 (cydB) CYDB-MONOMER (cytochrome bd-I terminal oxidase subunit II)
             0.9997 0.9993 EG10173 (cydA) CYDA-MONOMER (cytochrome bd-I terminal oxidase subunit I)
   *in cand* 0.9997 0.9994 EG11379 (appB) APPB-MONOMER (cytochrome bd-II terminal oxidase subunit II)
             0.9997 0.9993 EG11380 (appC) APPC-MONOMER (cytochrome bd-II terminal oxidase subunit I)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9994 EG10012 (cydC) CYDC-MONOMER (CydC)
   *in cand* 0.9998 0.9996 EG11405 (cydD) CYDD-MONOMER (CydD)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10012 EG11405 (centered at EG11405)
EG10174 (centered at EG10174)
EG11379 (centered at EG11379)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG11405   EG11379   EG10174   EG10012   
286/623303/623304/623282/623
AAEO224324:0:Tyes-00-
AAUR290340:2:Tyes157200-
ABAC204669:0:Tyes0885885-
ABAU360910:0:Tyes1330
ACAU438753:0:Tyes0331
ACEL351607:0:Tyes011-
ACRY349163:8:Tyes3002
ADEH290397:0:Tyes026952695-
AEHR187272:0:Tyes03973971
AFER243159:0:Tyes14004000
AHYD196024:0:Tyes05705701
ALAI441768:0:Tyes0--0
AMAR329726:9:Tyes-0-350
ANAE240017:0:Tyes011831
AORE350688:0:Tyes---0
APLE416269:0:Tyes53000529
APLE434271:0:Tno49900498
ASAL382245:5:Tyes2217002218
ASP1667:3:Tyes100-
ASP62928:0:Tyes237500-
ASP62977:0:Tyes-00-
ASP76114:2:Tyes0376376-
AVAR240292:2:Tyes-0--
BABO262698:0:Tno3002
BAMB339670:2:Tno0--0
BAMB339670:3:Tno-00-
BAMB398577:3:Tno-00-
BAMY326423:0:Tyes1220
BANT260799:0:Tno0286828681
BANT261594:2:Tno0287328731
BANT568206:2:Tyes1235823580
BANT592021:2:Tno0302130211
BBRO257310:0:Tyes1330
BCAN483179:0:Tno0441
BCEN331271:1:Tno0--0
BCEN331271:2:Tno-00-
BCEN331272:2:Tyes0--0
BCEN331272:3:Tyes-00-
BCER226900:1:Tyes0278927891
BCER288681:0:Tno0276927691
BCER315749:1:Tyes-00-
BCER405917:1:Tyes0277227721
BCER572264:1:Tno0288428841
BCLA66692:0:Tyes510--0
BHAL272558:0:Tyes0--1
BHEN283166:0:Tyes---0
BJAP224911:0:Fyes-0-1243
BLIC279010:0:Tyes1220
BLON206672:0:Tyes0---
BMAL243160:1:Tno-00-
BMAL320388:1:Tno-00-
BMAL320389:1:Tyes-00-
BMEL224914:0:Tno3002
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ZMOB264203:0:Tyes--0226



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