Installing Pathway Tools Patches
This page provides instructions for installing patch files for Pathway Tools software.
Auto-Patch
To automatically install all relevant patches:
- Select menu command Tools->Instant Patch->Download and Activate All Patches
- If that causes an error message to appear, you can instead
download all the relevant patches from the Internet, using a web
browser, such as Firefox or Internet Explorer. The instructions depend
on which operating system your BioCyc or Pathway Tools is installed on
and which version number (shown as [[VERSION]] below; version is
formatted like 7.5) of BioCyc or Pathway Tools you have:
- Solaris:
- Download all .lisp files from
http://bioinformatics.ai.sri.com/ptools/[[VERSION]]/Solaris/patches/
and save them to
aic-export/pathway-tools/ptools/[[VERSION]]/patches/ .
- Download all .fasl files from
http://bioinformatics.ai.sri.com/ptools/[[VERSION]]/Solaris/patches/
and save them to
aic-export/pathway-tools/ptools/[[VERSION]]/patches/bin-acl-8-1-sparc-solaris/
- Select menu command Tools->Instant Patch->Activate Installed Patches.
- Linux:
- Download all .lisp files from
http://bioinformatics.ai.sri.com/ptools/[[VERSION]]/Linux/patches/
and save them to
aic-export/pathway-tools/ptools/[[VERSION]]/patches/ .
- Download all .fasl files from
http://bioinformatics.ai.sri.com/ptools/[[VERSION]]/Linux/patches/
and save them to
aic-export/pathway-tools/ptools/[[VERSION]]/patches/bin-acl-8-1-x86-linux/
- Select menu command Tools->Instant Patch->Activate Installed Patches.
- Linux 64 bit:
- Download all .lisp files from
http://bioinformatics.ai.sri.com/ptools/[[VERSION]]/Linux-64/patches/
and save them to
aic-export/pathway-tools/ptools/[[VERSION]]/patches/
- Download all .fasl files from
http://bioinformatics.ai.sri.com/ptools/[[VERSION]]/Linux-64/patches/
and save them to
aic-export/pathway-tools/ptools/[[VERSION]]/patches/bin-acl-8-1-amd64-linux/
- Select menu command Tools->Instant Patch->Activate Installed Patches.
- MacOS (x86):
- Download all .lisp files from
http://bioinformatics.ai.sri.com/ptools/[[VERSION]]/MacOSX/patches/
and save them to
aic-export/pathway-tools/ptools/[[version]]/patches/
- Download all .fasl files from
http://bioinformatics.ai.sri.com/ptools/[[VERSION]]/MacOSX/patches/
and save them to
aic-export/pathway-tools/ptools/[[VERSION]]/patches/bin-acl-8-1-x86-macosx/
- Select menu command Tools->Instant Patch->Activate Installed Patches.
- MS Windows:
- Download all .lisp files from
http://bioinformatics.ai.sri.com/ptools/[[VERSION]]/MSWindows/patches/
and save them to
aic-export/pathway-tools/ptools/[[version]]/patches/
- Download all .fasl files from
http://bioinformatics.ai.sri.com/ptools/[[VERSION]]/MSWindows/patches/
and save them to
aic-export/pathway-tools/ptools/[[VERSION]]/patches/bin-acl-8-0-x86-mswindows/
- Select menu command Tools->Instant Patch->Activate Installed Patches.
Patches that We Email You
- Save the files to:
- .lisp files (all platforms):
- aic-export/pathway-tools/ptools/[[VERSION]]/patches/
- .fasl files:
- (Solaris) aic-export/pathway-tools/ptools/[[VERSION]]/patches/bin-acl-8-1-sparc-solaris/
- (Linux) aic-export/pathway-tools/ptools/[[VERSION]]/patches/bin-acl-8-1-x86-linux/
- (Linux-64) aic-export/pathway-tools/ptools/[[VERSION]]/patches/bin-acl-8-1-amd64-linux/
- (MacOSX) aic-export/pathway-tools/ptools/[[VERSION]]/patches/bin-acl-8-1-x86-macosx/
- (MS Windows) aic-export/pathway-tools/ptools/[[VERSION]]/patches/bin-acl-8-0-x86-mswindows
- Then, select the menu command Tools->Instant Patch->Activate Installed Patches