Upcoming Pathway Tools Tutorials and Workshops
Upcoming Pathway Tools Tutorials and Workshops
We typically have two types of tutorials:
Each day will be composed of a series of lectures and labs.
Introduction into Pathway Tools
Topics typically covered (final schedule subject to changes):
- Day 1 (Pathway / Genome Navigator)
- Pathway Tools Genome Navigator
- Omics Viewers: Cellular, Regulatory and Genome
- Comparative Analysis
- Structured Advanced Query
- SmartTables
- Enrichment/Depletion Analysis
- Day 2 (PathoLogic)
- Pathway Prediction using PathoLogic
- Matching Enyzme Names to Reactions
- Protein Complexes and Operon Predictor
- Building a PGDB using PathoLogic
- Introduction to Flux Balance Analysis in Pathway Tools using MetaFlux
- Day 3 (PGDB Editing)
- Pathway / Genome Editors
- Creating Reactions and Pathways
- Curating Genes and Enzymes
- Open Lab
Pathway Tools Tutorial on Metabolic Modeling using Flux Balance Analysis (FBA)
Topics typically covered (final schedule subject to changes):
- Day 1: Executing metabolic models with MetaFlux
- Steady-state metabolic models (FBA)
- Dynamic FBA models
- Models for organism communities
- The MetaFlux user interface
- Visualizing predicted fluxes on pathways and on the metabolic map
- Day 2: Constructing metabolic models with MetaFlux
- Predicting the biomass equation
- The reaction gap filler
- Tools for finding blocked reactions, unbalanced reactions, dead-end metabolites
- Open Lab
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