Supporting information for:
Discovering Novel Subsystems Using Comparative Genomics, L. Ferrer, A. Shearer and P. D. Karp

Functional Group Discovery for Escherichia Coli K-12

The following are the webpages listing candidates for different settings of the system's parameters. These settings coincide with those reported in Table 2 in the paper.

The full set of candidates for each %edges setting can be found in the link corresponding to #enr=0. The rest of the sets with larger #enr are simply higher confidence subsets of the first set.

Percent edges (%edges)  Min Num of Enriched Orgs (#enr)  Candidates
0.150Link
0.151Link
0.1510Link
0.1530Link
0.070Link
0.071Link
0.0710Link
0.0730Link

Reference lists of genomes used for the extraction of genome context and enrichement scores

Full list of size 623
Pruned list of size 468