| Num Enr Orgs (#Enr) | >= | 30 |
| Blast P-val (Blast) | >= | 0 |
| Max DoM C2P | >= | 0 |
| Max DoM C2P | <= | 1 |
| Max DoM P2C | >= | 0 |
| Max DoM P2C | <= | 1 |
| Num Genes (#Gen) | >= | 2 |
| Ave Score (Score) | >= | 0.99 |
Names in parenthesis indicate the short name used in the table below.
Interesting candidates are those with a high average score, at least a few enriched organisms and not a very low value of blast pval. A low value of blast pval indicates that most genes are paralogs of others in the group. Too few enriched organisms might mean that the group occured by pure chance.
The candidates are grouped by similarity in the genes they contain. The gene list on the top of each group indicates the genes that are common to all candidates in the group. The genes that are specific to a subset of candidates are listed besided the candidate id.
Groups are sorted by the average number of genes of the candidates included in it, from larger to smaller.
Click on the id of each candidate to see a very detailed report on its genes, their genome context scores, the enriched organisms, etc.
| Candidate ID | Score | #Enr | Blast | #Gen | Gene list (with product names) |
| Group 001 | Genes common to all candidates in group EG10766 (secY, b3300) -> SecY EG10865 (rplB, b3317) -> 50S ribosomal subunit protein L2 EG10867 (rplD, b3319) -> 50S ribosomal subunit protein L4 EG10868 (rplE, b3308) -> 50S ribosomal subunit protein L5 EG10869 (rplF, b3305) -> 50S ribosomal subunit protein L6 EG10875 (rplN, b3310) -> 50S ribosomal subunit protein L14 EG10878 (rplQ, b3294) -> 50S ribosomal subunit protein L17 EG10879 (rplR, b3304) -> 50S ribosomal subunit protein L18 EG10882 (rplV, b3315) -> 50S ribosomal subunit protein L22 EG10884 (rplX, b3309) -> 50S ribosomal subunit protein L24 EG10888 (rpmD, b3302) -> 50S ribosomal subunit protein L30 EG10893 (rpoA, b3295) -> RNA polymerase, α subunit EG10902 (rpsC, b3314) -> 30S ribosomal subunit protein S3 EG10904 (rpsE, b3303) -> 30S ribosomal subunit protein S5 EG10907 (rpsH, b3306) -> 30S ribosomal subunit protein S8 EG10910 (rpsK, b3297) -> 30S ribosomal subunit protein S11 EG10912 (rpsM, b3298) -> 30S ribosomal subunit protein S13 EG10916 (rpsQ, b3311) -> 30S ribosomal subunit protein S17 EG10918 (rpsS, b3316) -> 30S ribosomal subunit protein S19 | |||||
| Candidate 0003 | 1.000 | 262 | 1.000 | 31 | Additional genes in candidate EG10360 (fusA, b3340) -> elongation factor G EG10866 (rplC, b3320) -> 50S ribosomal subunit protein L3 EG10876 (rplO, b3301) -> 50S ribosomal subunit protein L15 EG10877 (rplP, b3313) -> 50S ribosomal subunit protein L16 EG10883 (rplW, b3318) -> 50S ribosomal subunit protein L23 EG10887 (rpmC, b3312) -> 50S ribosomal subunit protein L29 EG10903 (rpsD, b3296) -> 30S ribosomal subunit protein S4 EG10906 (rpsG, b3341) -> 30S ribosomal subunit protein S7 EG10909 (rpsJ, b3321) -> 30S ribosomal subunit protein S10 EG10911 (rpsL, b3342) -> 30S ribosomal subunit protein S12 EG10913 (rpsN, b3307) -> 30S ribosomal subunit protein S14 EG11232 (rpmJ, b3299) -> 50S ribosomal subunit protein L36 | |
| Candidate 0002 | 1.000 | 244 | 0.935 | 31 | Additional genes in candidate EG10360 (fusA, b3340) -> elongation factor G EG10866 (rplC, b3320) -> 50S ribosomal subunit protein L3 EG10876 (rplO, b3301) -> 50S ribosomal subunit protein L15 EG10877 (rplP, b3313) -> 50S ribosomal subunit protein L16 EG10883 (rplW, b3318) -> 50S ribosomal subunit protein L23 EG10887 (rpmC, b3312) -> 50S ribosomal subunit protein L29 EG10906 (rpsG, b3341) -> 30S ribosomal subunit protein S7 EG10909 (rpsJ, b3321) -> 30S ribosomal subunit protein S10 EG10911 (rpsL, b3342) -> 30S ribosomal subunit protein S12 EG10913 (rpsN, b3307) -> 30S ribosomal subunit protein S14 EG11036 (tufA, b3339) -> elongation factor Tu EG11037 (tufB, b3980) -> elongation factor Tu | |
| Candidate 0001 | 1.000 | 252 | 0.941 | 34 | Additional genes in candidate EG10360 (fusA, b3340) -> elongation factor G EG10866 (rplC, b3320) -> 50S ribosomal subunit protein L3 EG10871 (rplJ, b3985) -> 50S ribosomal subunit protein L10 EG10872 (rplK, b3983) -> 50S ribosomal subunit protein L11 EG10873 (rplL, b3986) -> 50S ribosomal subunit protein L7 EG10876 (rplO, b3301) -> 50S ribosomal subunit protein L15 EG10877 (rplP, b3313) -> 50S ribosomal subunit protein L16 EG10883 (rplW, b3318) -> 50S ribosomal subunit protein L23 EG10887 (rpmC, b3312) -> 50S ribosomal subunit protein L29 EG10894 (rpoB, b3987) -> RNA polymerase, β subunit EG10906 (rpsG, b3341) -> 30S ribosomal subunit protein S7 EG10909 (rpsJ, b3321) -> 30S ribosomal subunit protein S10 EG10911 (rpsL, b3342) -> 30S ribosomal subunit protein S12 EG11036 (tufA, b3339) -> elongation factor Tu EG11037 (tufB, b3980) -> elongation factor Tu | |
| Candidate 0000 | 1.000 | 276 | 0.944 | 36 | Additional genes in candidate EG10360 (fusA, b3340) -> elongation factor G EG10667 (nusG, b3982) -> transcription termination factor NusG EG10864 (rplA, b3984) -> 50S ribosomal subunit protein L1 EG10866 (rplC, b3320) -> 50S ribosomal subunit protein L3 EG10871 (rplJ, b3985) -> 50S ribosomal subunit protein L10 EG10872 (rplK, b3983) -> 50S ribosomal subunit protein L11 EG10873 (rplL, b3986) -> 50S ribosomal subunit protein L7 EG10877 (rplP, b3313) -> 50S ribosomal subunit protein L16 EG10883 (rplW, b3318) -> 50S ribosomal subunit protein L23 EG10887 (rpmC, b3312) -> 50S ribosomal subunit protein L29 EG10894 (rpoB, b3987) -> RNA polymerase, β subunit EG10895 (rpoC, b3988) -> RNA polymerase, β' subunit EG10906 (rpsG, b3341) -> 30S ribosomal subunit protein S7 EG10909 (rpsJ, b3321) -> 30S ribosomal subunit protein S10 EG10911 (rpsL, b3342) -> 30S ribosomal subunit protein S12 EG11036 (tufA, b3339) -> elongation factor Tu EG11037 (tufB, b3980) -> elongation factor Tu | |
| Candidate 0004 | 1.000 | 221 | 1.000 | 23 | Additional genes in candidate EG10504 (infA, bypA1) -> protein chain initiation factor IF-1 EG10876 (rplO, b3301) -> 50S ribosomal subunit protein L15 EG10903 (rpsD, b3296) -> 30S ribosomal subunit protein S4 EG11232 (rpmJ, b3299) -> 50S ribosomal subunit protein L36 |
| Group 002 | Genes common to all candidates in group EG10477 (hycD, b2722) -> hydrogenase 3, membrane subunit EG10478 (hycE, b2721) -> hydrogenase 3, large subunit EG10479 (hycF, b2720) -> formate hydrogenlyase complex iron-sulfur protein EG11773 (nuoM, b2277) -> NADH:ubiquinone oxidoreductase, membrane subunit M EG11774 (nuoF, b2284) -> NADH:ubiquinone oxidoreductase, chain F EG12082 (nuoA, b2288) -> NADH:ubiquinone oxidoreductase, membrane subunit A EG12083 (nuoB, b2287) -> NADH:ubiquinone oxidoreductase, chain B EG12084 (nuoC, b2286) -> NADH:ubiquinone oxidoreductase, chain CD EG12088 (nuoH, b2282) -> NADH:ubiquinone oxidoreductase, membrane subunit H EG12089 (nuoI, b2281) -> NADH:ubiquinone oxidoreductase, chain I EG12090 (nuoJ, b2280) -> NADH:ubiquinone oxidoreductase, membrane subunit J EG12092 (nuoL, b2278) -> NADH:ubiquinone oxidoreductase, membrane subunit L EG12093 (nuoN, b2276) -> NADH:ubiquinone oxidoreductase, membrane subunit N G7304 (hyfG, b2487) -> hydrogenase 4, large subunit G7305 (hyfH, b2488) -> hydrogenase 4, component H | |||||
| Candidate 0006 | 1.000 | 178 | 0.667 | 18 | Additional genes in candidate EG12086 (nuoE, b2285) -> NADH:ubiquinone oxidoreductase, chain E EG12087 (nuoG, b2283) -> NADH:ubiquinone oxidoreductase, chain G EG12091 (nuoK, b2279) -> NADH:ubiquinone oxidoreductase, membrane subunit K | |
| Candidate 0005 | 1.000 | 175 | 0.579 | 19 | Additional genes in candidate EG10480 (hycG, b2719) -> hydrogenase 3 and formate hydrogenlyase complex, HycG subunit EG12086 (nuoE, b2285) -> NADH:ubiquinone oxidoreductase, chain E EG12087 (nuoG, b2283) -> NADH:ubiquinone oxidoreductase, chain G G7306 (hyfI, b2489) -> hydrogenase 4, small subunit | |
| Candidate 0007 | 1.000 | 170 | 0.588 | 17 | Additional genes in candidate EG12091 (nuoK, b2279) -> NADH:ubiquinone oxidoreductase, membrane subunit K G7301 (hyfD, b2484) -> hydrogenase 4, component D |
| Group 003 | Candidate 0008 | 1.000 | 131 | 0.882 | 17 | Genes in candidate EG10360 (fusA, b3340) -> elongation factor G EG10667 (nusG, b3982) -> transcription termination factor NusG EG10864 (rplA, b3984) -> 50S ribosomal subunit protein L1 EG10865 (rplB, b3317) -> 50S ribosomal subunit protein L2 EG10866 (rplC, b3320) -> 50S ribosomal subunit protein L3 EG10871 (rplJ, b3985) -> 50S ribosomal subunit protein L10 EG10872 (rplK, b3983) -> 50S ribosomal subunit protein L11 EG10873 (rplL, b3986) -> 50S ribosomal subunit protein L7 EG10883 (rplW, b3318) -> 50S ribosomal subunit protein L23 EG10894 (rpoB, b3987) -> RNA polymerase, β subunit EG10895 (rpoC, b3988) -> RNA polymerase, β' subunit EG10906 (rpsG, b3341) -> 30S ribosomal subunit protein S7 EG10909 (rpsJ, b3321) -> 30S ribosomal subunit protein S10 EG10911 (rpsL, b3342) -> 30S ribosomal subunit protein S12 EG10939 (secE, b3981) -> SecE EG11036 (tufA, b3339) -> elongation factor Tu EG11037 (tufB, b3980) -> elongation factor Tu |
| Group 004 | Candidate 0013 | 1.000 | 133 | 1.000 | 14 | Genes in candidate EG10032 (adk, b0474) -> adenylate kinase EG10504 (infA, bypA1) -> protein chain initiation factor IF-1 EG10766 (secY, b3300) -> SecY EG10868 (rplE, b3308) -> 50S ribosomal subunit protein L5 EG10869 (rplF, b3305) -> 50S ribosomal subunit protein L6 EG10879 (rplR, b3304) -> 50S ribosomal subunit protein L18 EG10884 (rplX, b3309) -> 50S ribosomal subunit protein L24 EG10888 (rpmD, b3302) -> 50S ribosomal subunit protein L30 EG10893 (rpoA, b3295) -> RNA polymerase, α subunit EG10904 (rpsE, b3303) -> 30S ribosomal subunit protein S5 EG10907 (rpsH, b3306) -> 30S ribosomal subunit protein S8 EG10910 (rpsK, b3297) -> 30S ribosomal subunit protein S11 EG10912 (rpsM, b3298) -> 30S ribosomal subunit protein S13 EG11232 (rpmJ, b3299) -> 50S ribosomal subunit protein L36 |
| Group 005 | Genes common to all candidates in group EG10323 (fliM, b1945) -> flagellar motor switch protein FliM EG10324 (fliN, b1946) -> flagellar motor switch protein FliN EG11347 (fliF, b1938) -> flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein EG11654 (fliG, b1939) -> flagellar motor switch protein FliG EG11975 (fliP, b1948) -> flagellar biosynthesis protein FliP EG11977 (fliR, b1950) -> flagellar biosynthesis protein FliR G358 (flgB, b1073) -> flagellar basal-body rod protein FlgB G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G360 (flgD, b1075) -> flagellar biosynthesis, initiation of hook assembly G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG G7028 (flhB, b1880) -> flagellar biosynthesis protein FlhB | |||||
| Candidate 0012 | 1.000 | 134 | 1.000 | 14 | Additional genes in candidate EG11346 (fliE, b1937) -> flagellar basal-body protein FliE G370 (flhA, b1879) -> flagellar biosynthesis protein FlhA G377 (fliI, b1941) -> flagellum-specific ATP synthase FliI | |
| Candidate 0011 | 1.000 | 136 | 0.857 | 14 | Additional genes in candidate G361 (flgE, b1076) -> flagellar hook protein FlgE G370 (flhA, b1879) -> flagellar biosynthesis protein FlhA G377 (fliI, b1941) -> flagellum-specific ATP synthase FliI | |
| Candidate 0015 | 1.000 | 124 | 0.769 | 13 | Additional genes in candidate EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 G361 (flgE, b1076) -> flagellar hook protein FlgE |
| Group 006 | Genes common to all candidates in group EG11085 (rsmH, b0082) -> 16S rRNA m4C1402 methyltransferase EG10623 (murG, b0090) -> N-acetylglucosaminyl transferase EG10622 (murF, b0086) -> D-alanyl-D-alanine-adding enzyme EG10621 (murE, b0085) -> UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase EG10620 (murD, b0088) -> UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase EG10619 (murC, b0091) -> UDP-N-acetylmuramate-alanine ligase EG10604 (mraY, b0087) -> phospho-N-acetylmuramoyl-pentapeptide transferase EG10347 (ftsZ, b0095) -> essential cell division protein FtsZ EG10341 (ftsI, b0084) -> essential cell division protein FtsI; penicillin-binding protein 3 EG10339 (ftsA, b0094) -> essential cell division protein FtsA | |||||
| Candidate 0025 | 1.000 | 81 | 1.000 | 11 | Additional genes in candidate EG12440 (mpl, b4233) -> UDP-N-acetylmuramate:L-alanyl-γ-D-glutamyl-meso-diaminopimelate ligase | |
| Candidate 0009 | 1.000 | 112 | 1.000 | 15 | Additional genes in candidate EG10214 (ddlB, b0092) -> ddlB EG10265 (lpxC, b0096) -> UDP-3-O-acyl-N-acetylglucosamine deacetylase EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10344 (ftsW, b0089) -> essential cell division protein FtsW EG11084 (mraZ, b0081) -> conserved protein |
| Group 007 | Genes common to all candidates in group G6093 (bamA, bamA) -> BamA G6092 (ispU, b0174) -> subunit of undecaprenyl diphosphate synthase EG12715 (dxr, b0173) -> Dxr EG12436 (rseP, b0176) -> RseP zinc protease EG11539 (pyrH, b0171) -> PyrH EG11033 (tsf, b0170) -> protein chain elongation factor EF-Ts EG10901 (rpsB, b0169) -> 30S ribosomal subunit protein S2 EG10335 (frr, b0172) -> ribosome recycling factor EG10139 (cdsA, b0175) -> CDP-diglyceride synthetase | |||||
| Candidate 0040 | 1.000 | 39 | 1.000 | 10 | Additional genes in candidate EG10570 (map, b0168) -> methionine aminopeptidase | |
| Candidate 0010 | 1.000 | 113 | 1.000 | 15 | Additional genes in candidate EG10316 (lpxD, b0179) -> UDP-3-O-[3-hydroxymyristoyl]glucosamine N-acetyltransferase EG10455 (hlpA, b0178) -> periplasmic chaperone EG10545 (lpxA, b0181) -> LpxA EG10546 (lpxB, b0182) -> LpxB EG10861 (rnhB, b0183) -> RNAse HII, degrades RNA of DNA-RNA hybrids EG11284 (fabZ, b0180) -> FabZ |
| Group 008 | Candidate 0017 | 1.000 | 106 | 1.000 | 12 | Genes in candidate EG10323 (fliM, b1945) -> flagellar motor switch protein FliM EG10324 (fliN, b1946) -> flagellar motor switch protein FliN EG11346 (fliE, b1937) -> flagellar basal-body protein FliE EG11347 (fliF, b1938) -> flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein EG11355 (fliA, b1922) -> RNA polymerase, sigma 28 (sigma F) factor EG11654 (fliG, b1939) -> flagellar motor switch protein FliG EG11975 (fliP, b1948) -> flagellar biosynthesis protein FliP EG11976 (fliQ, b1949) -> flagellar biosynthesis protein FliQ EG11977 (fliR, b1950) -> flagellar biosynthesis protein FliR G370 (flhA, b1879) -> flagellar biosynthesis protein FlhA G377 (fliI, b1941) -> flagellum-specific ATP synthase FliI G7028 (flhB, b1880) -> flagellar biosynthesis protein FlhB |
| Group 009 | Genes common to all candidates in group G6753 (ydcU, b1442) -> YdcU G6752 (ydcT, b1441) -> YdcT G6751 (ydcS, b1440) -> YdcS EG11632 (potI, b0857) -> PotI EG11631 (potH, b0856) -> PotH EG11630 (potG, b0855) -> PotG EG10752 (potD, b1123) -> PotD EG10751 (potC, b1124) -> PotC EG10750 (potB, b1125) -> PotB EG10749 (potA, b1126) -> PotA | |||||
| Candidate 0021 | 1.000 | 35 | 0.000 | 11 | Additional genes in candidate EG11629 (potF, b0854) -> PotF | |
| Candidate 0020 | 1.000 | 42 | 0.091 | 11 | Additional genes in candidate G6754 (ydcV, b1443) -> YdcV |
| Group 010 | Candidate 0026 | 1.000 | 48 | 0.000 | 11 | Genes in candidate EG10336 (fruA, b2167) -> FruA EG10337 (fruK, b2168) -> 1-phosphofructokinase monomer EG10700 (pfkB, b1723) -> 6-phosphofructokinase-2 monomer EG11863 (frvB, b3899) -> FrvB EG11864 (frvA, b3900) -> FrvA EG11908 (frwC, b3949) -> FrwC EG11909 (frwB, b3950) -> FrwB EG11912 (frwD, b3953) -> PTS system fructose-like IIB component 2 EG13235 (mngA, b0731) -> MngA G7249 (fryC, b2386) -> predicted enzyme IIC component of PTS G7250 (fryB, b2387) -> predicted enzyme IIB component of PTS |
| Group 011 | Candidate 0024 | 1.000 | 93 | 0.455 | 11 | Genes in candidate EG10469 (hyaB, b0973) -> hydrogenase 1, large subunit EG10483 (hypA, b2726) -> accessory protein for nickel incorporation into hydrogenase 3 EG10484 (hypB, b2727) -> accessory protein for nickel incorporation into hydrogenase isoenzymes EG10485 (hypC, b2728) -> protein involved in hydrogenase 3 maturation EG10486 (hypD, b2729) -> protein involved in maturation of hydrogenase isoenzymes EG10487 (hypE, b2730) -> HypE-S-carboxamide EG11551 (hypF, b2712) -> hydrogenase maturation protein, carbamoyltransferase EG11801 (hybC, b2994) -> hydrogenase 2, large subunit EG11804 (hybF, b2991) -> protein involved with the maturation of hydrogenases 1 and 2 EG11805 (hybG, b2990) -> hydrogenase 2 accessory protein G7554 (hybO, b2997) -> hydrogenase 2, small subunit |
| Group 012 | Genes common to all candidates in group EG10814 (rbsA, b3749) -> RbsA EG10816 (rbsC, b3750) -> RbsC EG11958 (alsC, b4086) -> AlsC EG11959 (alsA, b4087) -> AlsA EG12520 (ytfT, b4230) -> YtfT | |||||
| Candidate 0018 | 1.000 | 40 | 0.250 | 12 | Additional genes in candidate EG10058 (araG, b1900) -> AraG EG10815 (rbsB, b3751) -> RbsB EG10817 (rbsD, b3748) -> ribose pyranase EG12275 (xylG, b3567) -> XylG EG12439 (yjfF, b4231) -> YjfF EG12518 (ytfR, b4228 (obsolete)) -> YtfR G6800 (lsrA, b1513) -> LsrA | |
| Candidate 0014 | 1.000 | 45 | 0.154 | 13 | Additional genes in candidate EG10815 (rbsB, b3751) -> RbsB EG10817 (rbsD, b3748) -> ribose pyranase EG12275 (xylG, b3567) -> XylG EG12439 (yjfF, b4231) -> YjfF EG12517 (ytfQ, b4227) -> YtfQ EG12518 (ytfR, b4228 (obsolete)) -> YtfR G6800 (lsrA, b1513) -> LsrA G7340 (yphD, b2546) -> YphD | |
| Candidate 0033 | 1.000 | 31 | 0.300 | 10 | Additional genes in candidate EG10815 (rbsB, b3751) -> RbsB EG12439 (yjfF, b4231) -> YjfF G6800 (lsrA, b1513) -> LsrA G6801 (lsrC, b1514) -> LsrC G7340 (yphD, b2546) -> YphD | |
| Candidate 0029 | 1.000 | 41 | 0.182 | 11 | Additional genes in candidate EG10059 (araH, b1898 (obsolete)) -> high-affinity L-arabinose transport protein (ABC superfamily, membrane) EG10815 (rbsB, b3751) -> RbsB EG12439 (yjfF, b4231) -> YjfF EG12517 (ytfQ, b4227) -> YtfQ EG12518 (ytfR, b4228 (obsolete)) -> YtfR G7340 (yphD, b2546) -> YphD | |
| Candidate 0028 | 1.000 | 39 | 0.182 | 11 | Additional genes in candidate EG10059 (araH, b1898 (obsolete)) -> high-affinity L-arabinose transport protein (ABC superfamily, membrane) EG10815 (rbsB, b3751) -> RbsB EG12439 (yjfF, b4231) -> YjfF EG12517 (ytfQ, b4227) -> YtfQ G7340 (yphD, b2546) -> YphD G7342 (yphF, b2548) -> YphF | |
| Candidate 0048 | 1.000 | 31 | 0.200 | 10 | Additional genes in candidate EG10058 (araG, b1900) -> AraG EG10059 (araH, b1898 (obsolete)) -> high-affinity L-arabinose transport protein (ABC superfamily, membrane) EG10815 (rbsB, b3751) -> RbsB EG12439 (yjfF, b4231) -> YjfF EG12518 (ytfR, b4228 (obsolete)) -> YtfR | |
| Candidate 0046 | 1.000 | 31 | 0.200 | 10 | Additional genes in candidate EG10059 (araH, b1898 (obsolete)) -> high-affinity L-arabinose transport protein (ABC superfamily, membrane) EG10592 (mglA, b2149) -> MglA EG12517 (ytfQ, b4227) -> YtfQ EG12518 (ytfR, b4228 (obsolete)) -> YtfR G7340 (yphD, b2546) -> YphD | |
| Candidate 0022 | 1.000 | 40 | 0.182 | 11 | Additional genes in candidate EG10592 (mglA, b2149) -> MglA EG12275 (xylG, b3567) -> XylG EG12517 (ytfQ, b4227) -> YtfQ EG12518 (ytfR, b4228 (obsolete)) -> YtfR G6800 (lsrA, b1513) -> LsrA G7340 (yphD, b2546) -> YphD | |
| Candidate 0047 | 1.000 | 30 | 0.100 | 10 | Additional genes in candidate EG10058 (araG, b1900) -> AraG EG10592 (mglA, b2149) -> MglA EG12275 (xylG, b3567) -> XylG EG12518 (ytfR, b4228 (obsolete)) -> YtfR G6800 (lsrA, b1513) -> LsrA |
| Group 013 | Genes common to all candidates in group G7304 (hyfG, b2487) -> hydrogenase 4, large subunit G7303 (hyfF, b2486) -> hydrogenase 4, component F EG12093 (nuoN, b2276) -> NADH:ubiquinone oxidoreductase, membrane subunit N EG12092 (nuoL, b2278) -> NADH:ubiquinone oxidoreductase, membrane subunit L EG12088 (nuoH, b2282) -> NADH:ubiquinone oxidoreductase, membrane subunit H EG11773 (nuoM, b2277) -> NADH:ubiquinone oxidoreductase, membrane subunit M EG10479 (hycF, b2720) -> formate hydrogenlyase complex iron-sulfur protein EG10478 (hycE, b2721) -> hydrogenase 3, large subunit EG10477 (hycD, b2722) -> hydrogenase 3, membrane subunit | |||||
| Candidate 0023 | 1.000 | 99 | 0.545 | 11 | Additional genes in candidate EG10480 (hycG, b2719) -> hydrogenase 3 and formate hydrogenlyase complex, HycG subunit G7306 (hyfI, b2489) -> hydrogenase 4, small subunit | |
| Candidate 0035 | 1.000 | 90 | 0.600 | 10 | Additional genes in candidate G7301 (hyfD, b2484) -> hydrogenase 4, component D |
| Group 014 | Genes common to all candidates in group EG10375 (mnmG, b3741) -> protein involved in a tRNA modification pathway EG10105 (atpH, b3735) -> ATP synthase, F1 complex, δ subunit EG10104 (atpG, b3733) -> ATP synthase, F1 complex, γ subunit EG10103 (atpF, b3736) -> ATP synthase, F0 complex, b subunit EG10102 (atpE, b3737) -> ATP synthase, F0 complex, c subunit EG10101 (atpD, b3732) -> ATP synthase, F1 complex, β subunit EG10100 (atpC, b3731) -> ATP synthase, F1 complex, ε subunit EG10099 (atpB, b3738) -> ATP synthase, F0 complex, a subunit EG10098 (atpA, b3734) -> ATP synthase, F1 complex, α subunit | |||||
| Candidate 0043 | 1.000 | 38 | 1.000 | 10 | Additional genes in candidate EG10376 (rsmG, b3740) -> 16S rRNA m7G527 methyltransferase | |
| Candidate 0042 | 1.000 | 37 | 1.000 | 10 | Additional genes in candidate EG11198 (glmU, b3730) -> GlmU |
| Group 015 | Candidate 0039 | 1.000 | 51 | 1.000 | 10 | Genes in candidate EG10235 (dnaA, b3702) -> chromosomal replication initiator protein DnaA; DNA-binding transcriptional dual regulator EG10242 (dnaN, b3701) -> DnaN EG10375 (mnmG, b3741) -> protein involved in a tRNA modification pathway EG10376 (rsmG, b3740) -> 16S rRNA m7G527 methyltransferase EG10424 (gyrB, b3699) -> DNA gyrase, subunit B EG10828 (recF, b3700) -> ssDNA and dsDNA binding, ATP binding EG10862 (rnpA, b3704) -> RNase P protein component; processes tRNA, 4.5S RNA EG10892 (rpmH, b3703) -> 50S ribosomal subunit protein L34 EG10997 (mnmE, b3706) -> GTP-binding protein with a role in modification of tRNA EG11197 (yidC, b3705) -> inner-membrane protein insertion factor |
| Group 016 | Genes common to all candidates in group EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 G358 (flgB, b1073) -> flagellar basal-body rod protein FlgB G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G360 (flgD, b1075) -> flagellar biosynthesis, initiation of hook assembly G361 (flgE, b1076) -> flagellar hook protein FlgE G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG | |||||
| Candidate 0031 | 1.000 | 53 | 0.600 | 10 | Additional genes in candidate EG11975 (fliP, b1948) -> flagellar biosynthesis protein FliP G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein G365 (flgI, b1080) -> flagellar P-ring protein FlgI | |
| Candidate 0030 | 1.000 | 57 | 0.600 | 10 | Additional genes in candidate EG11975 (fliP, b1948) -> flagellar biosynthesis protein FliP G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein G7028 (flhB, b1880) -> flagellar biosynthesis protein FlhB | |
| Candidate 0036 | 1.000 | 60 | 0.600 | 10 | Additional genes in candidate EG10323 (fliM, b1945) -> flagellar motor switch protein FliM EG11975 (fliP, b1948) -> flagellar biosynthesis protein FliP G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF G7028 (flhB, b1880) -> flagellar biosynthesis protein FlhB | |
| Candidate 0019 | 1.000 | 53 | 0.636 | 11 | Additional genes in candidate EG11545 (flgL, b1083) -> flagellar biosynthesis; hook-filament junction protein G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein G365 (flgI, b1080) -> flagellar P-ring protein FlgI G366 (flgJ, b1081) -> FlgJ | |
| Candidate 0065 | 1.000 | 32 | 0.625 | 8 | Additional genes in candidate EG11545 (flgL, b1083) -> flagellar biosynthesis; hook-filament junction protein EG11654 (fliG, b1939) -> flagellar motor switch protein FliG |
| Group 017 | Candidate 0061 | 1.000 | 53 | 0.000 | 9 | Genes in candidate EG10028 (pflA, b0902) -> pyruvate formate-lyase activating enzyme EG10701 (pflB, b0903) -> PflB EG11784 (yfiD, b2579) -> stress-induced alternate pyruvate formate-lyase subunit EG11910 (pflD, b3951) -> formate acetyltransferase 2 EG11911 (pflC, b3952) -> probable pyruvate formate lyase 2 activating enzyme G6426 (ybiW, b0823) -> predicted pyruvate formate lyase G6427 (ybiY, b0824) -> predicted pyruvate formate lyase activating enzyme G7627 (tdcE, b3114) -> 2-ketobutyrate formate-lyase / pyruvate formate-lyase 4 G7953 (yjjW, b4379) -> predicted pyruvate formate lyase activating enzyme |
| Group 018 | Genes common to all candidates in group EG10476 (hycC, b2723) -> hydrogenase 3, membrane subunit EG10477 (hycD, b2722) -> hydrogenase 3, membrane subunit EG10478 (hycE, b2721) -> hydrogenase 3, large subunit G7303 (hyfF, b2486) -> hydrogenase 4, component F G7304 (hyfG, b2487) -> hydrogenase 4, large subunit G7306 (hyfI, b2489) -> hydrogenase 4, small subunit | |||||
| Candidate 0056 | 1.000 | 41 | 0.000 | 9 | Additional genes in candidate EG10480 (hycG, b2719) -> hydrogenase 3 and formate hydrogenlyase complex, HycG subunit EG11282 (hyfB, b2482) -> hydrogenase 4, component B G7300 (hyfC, b2483) -> hydrogenase 4, component C | |
| Candidate 0055 | 1.000 | 30 | 0.222 | 9 | Additional genes in candidate EG11282 (hyfB, b2482) -> hydrogenase 4, component B G7300 (hyfC, b2483) -> hydrogenase 4, component C G7302 (hyfE, b2485) -> hydrogenase 4, component E | |
| Candidate 0072 | 1.000 | 37 | 0.375 | 8 | Additional genes in candidate EG10479 (hycF, b2720) -> formate hydrogenlyase complex iron-sulfur protein EG10480 (hycG, b2719) -> hydrogenase 3 and formate hydrogenlyase complex, HycG subunit |
| Group 019 | Candidate 0073 | 1.000 | 73 | 1.000 | 8 | Genes in candidate EG10444 (hisA, b2024) -> N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase EG10445 (hisB, b2022) -> HisB EG10446 (hisC, b2021) -> HisC EG10447 (hisD, b2020) -> HisD EG10448 (hisF, b2025) -> imidazole glycerol phosphate synthase, HisF subunit EG10449 (hisG, b2019) -> HisG EG10450 (hisH, b2023) -> imidazole glycerol phosphate synthase, HisH subunit EG10451 (hisI, b2026) -> phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphatase |
| Group 020 | Genes common to all candidates in group EG11654 (fliG, b1939) -> flagellar motor switch protein FliG EG11347 (fliF, b1938) -> flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein EG10324 (fliN, b1946) -> flagellar motor switch protein FliN EG10323 (fliM, b1945) -> flagellar motor switch protein FliM EG10321 (fliC, b1923) -> flagellar biosynthesis; flagellin, filament structural protein | |||||
| Candidate 0078 | 1.000 | 31 | 1.000 | 8 | Additional genes in candidate EG11346 (fliE, b1937) -> flagellar basal-body protein FliE EG11388 (fliS, b1925) -> flagellar biosynthesis protein FliS G377 (fliI, b1941) -> flagellum-specific ATP synthase FliI | |
| Candidate 0077 | 1.000 | 32 | 1.000 | 8 | Additional genes in candidate EG11346 (fliE, b1937) -> flagellar basal-body protein FliE G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG G377 (fliI, b1941) -> flagellum-specific ATP synthase FliI | |
| Candidate 0079 | 1.000 | 30 | 1.000 | 8 | Additional genes in candidate EG11346 (fliE, b1937) -> flagellar basal-body protein FliE EG11355 (fliA, b1922) -> RNA polymerase, sigma 28 (sigma F) factor G377 (fliI, b1941) -> flagellum-specific ATP synthase FliI | |
| Candidate 0113 | 1.000 | 31 | 1.000 | 7 | Additional genes in candidate EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG |
| Group 021 | Genes common to all candidates in group G7554 (hybO, b2997) -> hydrogenase 2, small subunit EG11802 (hybD, b2993) -> predicted maturation peptidase for hydrogenase 2 EG11801 (hybC, b2994) -> hydrogenase 2, large subunit EG10484 (hypB, b2727) -> accessory protein for nickel incorporation into hydrogenase isoenzymes EG10469 (hyaB, b0973) -> hydrogenase 1, large subunit | |||||
| Candidate 0109 | 1.000 | 36 | 0.143 | 7 | Additional genes in candidate EG10468 (hyaA, b0972) -> hydrogenase 1, small subunit EG10471 (hyaD, b0975) -> protein involved in processing of HyaA and HyaB proteins | |
| Candidate 0108 | 1.000 | 38 | 0.714 | 7 | Additional genes in candidate EG11804 (hybF, b2991) -> protein involved with the maturation of hydrogenases 1 and 2 EG11805 (hybG, b2990) -> hydrogenase 2 accessory protein |
| Group 022 | Genes common to all candidates in group EG10494 (ilvB, b3671) -> IlvB EG10499 (ilvH, brnP) -> IlvH EG10500 (ilvI, b0077) -> IlvI EG10502 (ilvN, b3670) -> IlvN EG11583 (gcl, b0507) -> Gcl | |||||
| Candidate 0103 | 1.000 | 43 | 0.571 | 7 | Additional genes in candidate EG10495 (ilvC, b3774) -> IlvC G7236 (oxc, b2373) -> oxalyl-CoA decarboxylase | |
| Candidate 0102 | 1.000 | 38 | 0.571 | 7 | Additional genes in candidate EG10754 (poxB, b0871) -> pyruvate oxidase monomer G7236 (oxc, b2373) -> oxalyl-CoA decarboxylase | |
| Candidate 0104 | 1.000 | 46 | 0.714 | 7 | Additional genes in candidate EG10495 (ilvC, b3774) -> IlvC EG11226 (leuA, b0074) -> 2-isopropylmalate synthase |
| Group 023 | Candidate 0167 | 1.000 | 37 | 0.000 | 6 | Genes in candidate EG10067 (argF, b0273) -> ArgF EG10069 (argI, b4254) -> ArgI EG12384 (ybcF, b0521) -> predicted carbamate kinase G6188 (yahI, b0323) -> predicted carbamate kinase-like protein G7489 (ygeW, b2870) -> putative carbamoyltransferase G7493 (yqeA, b2874) -> predicted amino acid kinase |