| Num Enr Orgs (#Enr) | >= | 10 |
| Blast P-val (Blast) | >= | 0 |
| Max DoM C2P | >= | 0 |
| Max DoM C2P | <= | 1 |
| Max DoM P2C | >= | 0 |
| Max DoM P2C | <= | 1 |
| Num Genes (#Gen) | >= | 2 |
| Ave Score (Score) | >= | 0.99 |
Names in parenthesis indicate the short name used in the table below.
Interesting candidates are those with a high average score, at least a few enriched organisms and not a very low value of blast pval. A low value of blast pval indicates that most genes are paralogs of others in the group. Too few enriched organisms might mean that the group occured by pure chance.
The candidates are grouped by similarity in the genes they contain. The gene list on the top of each group indicates the genes that are common to all candidates in the group. The genes that are specific to a subset of candidates are listed besided the candidate id.
Groups are sorted by the average number of genes of the candidates included in it, from larger to smaller.
Click on the id of each candidate to see a very detailed report on its genes, their genome context scores, the enriched organisms, etc.
| Candidate ID | Score | #Enr | Blast | #Gen | Gene list (with product names) |
| Group 001 | Genes common to all candidates in group EG10766 (secY, b3300) -> SecY EG10865 (rplB, b3317) -> 50S ribosomal subunit protein L2 EG10867 (rplD, b3319) -> 50S ribosomal subunit protein L4 EG10868 (rplE, b3308) -> 50S ribosomal subunit protein L5 EG10869 (rplF, b3305) -> 50S ribosomal subunit protein L6 EG10875 (rplN, b3310) -> 50S ribosomal subunit protein L14 EG10878 (rplQ, b3294) -> 50S ribosomal subunit protein L17 EG10879 (rplR, b3304) -> 50S ribosomal subunit protein L18 EG10882 (rplV, b3315) -> 50S ribosomal subunit protein L22 EG10884 (rplX, b3309) -> 50S ribosomal subunit protein L24 EG10888 (rpmD, b3302) -> 50S ribosomal subunit protein L30 EG10893 (rpoA, b3295) -> RNA polymerase, α subunit EG10902 (rpsC, b3314) -> 30S ribosomal subunit protein S3 EG10904 (rpsE, b3303) -> 30S ribosomal subunit protein S5 EG10907 (rpsH, b3306) -> 30S ribosomal subunit protein S8 EG10910 (rpsK, b3297) -> 30S ribosomal subunit protein S11 EG10912 (rpsM, b3298) -> 30S ribosomal subunit protein S13 EG10916 (rpsQ, b3311) -> 30S ribosomal subunit protein S17 EG10918 (rpsS, b3316) -> 30S ribosomal subunit protein S19 | |||||
| Candidate 0003 | 1.000 | 262 | 1.000 | 31 | Additional genes in candidate EG10360 (fusA, b3340) -> elongation factor G EG10866 (rplC, b3320) -> 50S ribosomal subunit protein L3 EG10876 (rplO, b3301) -> 50S ribosomal subunit protein L15 EG10877 (rplP, b3313) -> 50S ribosomal subunit protein L16 EG10883 (rplW, b3318) -> 50S ribosomal subunit protein L23 EG10887 (rpmC, b3312) -> 50S ribosomal subunit protein L29 EG10903 (rpsD, b3296) -> 30S ribosomal subunit protein S4 EG10906 (rpsG, b3341) -> 30S ribosomal subunit protein S7 EG10909 (rpsJ, b3321) -> 30S ribosomal subunit protein S10 EG10911 (rpsL, b3342) -> 30S ribosomal subunit protein S12 EG10913 (rpsN, b3307) -> 30S ribosomal subunit protein S14 EG11232 (rpmJ, b3299) -> 50S ribosomal subunit protein L36 | |
| Candidate 0002 | 1.000 | 244 | 0.935 | 31 | Additional genes in candidate EG10360 (fusA, b3340) -> elongation factor G EG10866 (rplC, b3320) -> 50S ribosomal subunit protein L3 EG10876 (rplO, b3301) -> 50S ribosomal subunit protein L15 EG10877 (rplP, b3313) -> 50S ribosomal subunit protein L16 EG10883 (rplW, b3318) -> 50S ribosomal subunit protein L23 EG10887 (rpmC, b3312) -> 50S ribosomal subunit protein L29 EG10906 (rpsG, b3341) -> 30S ribosomal subunit protein S7 EG10909 (rpsJ, b3321) -> 30S ribosomal subunit protein S10 EG10911 (rpsL, b3342) -> 30S ribosomal subunit protein S12 EG10913 (rpsN, b3307) -> 30S ribosomal subunit protein S14 EG11036 (tufA, b3339) -> elongation factor Tu EG11037 (tufB, b3980) -> elongation factor Tu | |
| Candidate 0001 | 1.000 | 252 | 0.941 | 34 | Additional genes in candidate EG10360 (fusA, b3340) -> elongation factor G EG10866 (rplC, b3320) -> 50S ribosomal subunit protein L3 EG10871 (rplJ, b3985) -> 50S ribosomal subunit protein L10 EG10872 (rplK, b3983) -> 50S ribosomal subunit protein L11 EG10873 (rplL, b3986) -> 50S ribosomal subunit protein L7 EG10876 (rplO, b3301) -> 50S ribosomal subunit protein L15 EG10877 (rplP, b3313) -> 50S ribosomal subunit protein L16 EG10883 (rplW, b3318) -> 50S ribosomal subunit protein L23 EG10887 (rpmC, b3312) -> 50S ribosomal subunit protein L29 EG10894 (rpoB, b3987) -> RNA polymerase, β subunit EG10906 (rpsG, b3341) -> 30S ribosomal subunit protein S7 EG10909 (rpsJ, b3321) -> 30S ribosomal subunit protein S10 EG10911 (rpsL, b3342) -> 30S ribosomal subunit protein S12 EG11036 (tufA, b3339) -> elongation factor Tu EG11037 (tufB, b3980) -> elongation factor Tu | |
| Candidate 0000 | 1.000 | 276 | 0.944 | 36 | Additional genes in candidate EG10360 (fusA, b3340) -> elongation factor G EG10667 (nusG, b3982) -> transcription termination factor NusG EG10864 (rplA, b3984) -> 50S ribosomal subunit protein L1 EG10866 (rplC, b3320) -> 50S ribosomal subunit protein L3 EG10871 (rplJ, b3985) -> 50S ribosomal subunit protein L10 EG10872 (rplK, b3983) -> 50S ribosomal subunit protein L11 EG10873 (rplL, b3986) -> 50S ribosomal subunit protein L7 EG10877 (rplP, b3313) -> 50S ribosomal subunit protein L16 EG10883 (rplW, b3318) -> 50S ribosomal subunit protein L23 EG10887 (rpmC, b3312) -> 50S ribosomal subunit protein L29 EG10894 (rpoB, b3987) -> RNA polymerase, β subunit EG10895 (rpoC, b3988) -> RNA polymerase, β' subunit EG10906 (rpsG, b3341) -> 30S ribosomal subunit protein S7 EG10909 (rpsJ, b3321) -> 30S ribosomal subunit protein S10 EG10911 (rpsL, b3342) -> 30S ribosomal subunit protein S12 EG11036 (tufA, b3339) -> elongation factor Tu EG11037 (tufB, b3980) -> elongation factor Tu | |
| Candidate 0004 | 1.000 | 221 | 1.000 | 23 | Additional genes in candidate EG10504 (infA, bypA1) -> protein chain initiation factor IF-1 EG10876 (rplO, b3301) -> 50S ribosomal subunit protein L15 EG10903 (rpsD, b3296) -> 30S ribosomal subunit protein S4 EG11232 (rpmJ, b3299) -> 50S ribosomal subunit protein L36 |
| Group 002 | Genes common to all candidates in group EG10477 (hycD, b2722) -> hydrogenase 3, membrane subunit EG10478 (hycE, b2721) -> hydrogenase 3, large subunit EG10479 (hycF, b2720) -> formate hydrogenlyase complex iron-sulfur protein EG11773 (nuoM, b2277) -> NADH:ubiquinone oxidoreductase, membrane subunit M EG11774 (nuoF, b2284) -> NADH:ubiquinone oxidoreductase, chain F EG12082 (nuoA, b2288) -> NADH:ubiquinone oxidoreductase, membrane subunit A EG12083 (nuoB, b2287) -> NADH:ubiquinone oxidoreductase, chain B EG12084 (nuoC, b2286) -> NADH:ubiquinone oxidoreductase, chain CD EG12088 (nuoH, b2282) -> NADH:ubiquinone oxidoreductase, membrane subunit H EG12089 (nuoI, b2281) -> NADH:ubiquinone oxidoreductase, chain I EG12090 (nuoJ, b2280) -> NADH:ubiquinone oxidoreductase, membrane subunit J EG12092 (nuoL, b2278) -> NADH:ubiquinone oxidoreductase, membrane subunit L EG12093 (nuoN, b2276) -> NADH:ubiquinone oxidoreductase, membrane subunit N G7304 (hyfG, b2487) -> hydrogenase 4, large subunit G7305 (hyfH, b2488) -> hydrogenase 4, component H | |||||
| Candidate 0006 | 1.000 | 178 | 0.667 | 18 | Additional genes in candidate EG12086 (nuoE, b2285) -> NADH:ubiquinone oxidoreductase, chain E EG12087 (nuoG, b2283) -> NADH:ubiquinone oxidoreductase, chain G EG12091 (nuoK, b2279) -> NADH:ubiquinone oxidoreductase, membrane subunit K | |
| Candidate 0005 | 1.000 | 175 | 0.579 | 19 | Additional genes in candidate EG10480 (hycG, b2719) -> hydrogenase 3 and formate hydrogenlyase complex, HycG subunit EG12086 (nuoE, b2285) -> NADH:ubiquinone oxidoreductase, chain E EG12087 (nuoG, b2283) -> NADH:ubiquinone oxidoreductase, chain G G7306 (hyfI, b2489) -> hydrogenase 4, small subunit | |
| Candidate 0007 | 1.000 | 170 | 0.588 | 17 | Additional genes in candidate EG12091 (nuoK, b2279) -> NADH:ubiquinone oxidoreductase, membrane subunit K G7301 (hyfD, b2484) -> hydrogenase 4, component D |
| Group 003 | Candidate 0008 | 1.000 | 131 | 0.882 | 17 | Genes in candidate EG10360 (fusA, b3340) -> elongation factor G EG10667 (nusG, b3982) -> transcription termination factor NusG EG10864 (rplA, b3984) -> 50S ribosomal subunit protein L1 EG10865 (rplB, b3317) -> 50S ribosomal subunit protein L2 EG10866 (rplC, b3320) -> 50S ribosomal subunit protein L3 EG10871 (rplJ, b3985) -> 50S ribosomal subunit protein L10 EG10872 (rplK, b3983) -> 50S ribosomal subunit protein L11 EG10873 (rplL, b3986) -> 50S ribosomal subunit protein L7 EG10883 (rplW, b3318) -> 50S ribosomal subunit protein L23 EG10894 (rpoB, b3987) -> RNA polymerase, β subunit EG10895 (rpoC, b3988) -> RNA polymerase, β' subunit EG10906 (rpsG, b3341) -> 30S ribosomal subunit protein S7 EG10909 (rpsJ, b3321) -> 30S ribosomal subunit protein S10 EG10911 (rpsL, b3342) -> 30S ribosomal subunit protein S12 EG10939 (secE, b3981) -> SecE EG11036 (tufA, b3339) -> elongation factor Tu EG11037 (tufB, b3980) -> elongation factor Tu |
| Group 004 | Candidate 0013 | 1.000 | 133 | 1.000 | 14 | Genes in candidate EG10032 (adk, b0474) -> adenylate kinase EG10504 (infA, bypA1) -> protein chain initiation factor IF-1 EG10766 (secY, b3300) -> SecY EG10868 (rplE, b3308) -> 50S ribosomal subunit protein L5 EG10869 (rplF, b3305) -> 50S ribosomal subunit protein L6 EG10879 (rplR, b3304) -> 50S ribosomal subunit protein L18 EG10884 (rplX, b3309) -> 50S ribosomal subunit protein L24 EG10888 (rpmD, b3302) -> 50S ribosomal subunit protein L30 EG10893 (rpoA, b3295) -> RNA polymerase, α subunit EG10904 (rpsE, b3303) -> 30S ribosomal subunit protein S5 EG10907 (rpsH, b3306) -> 30S ribosomal subunit protein S8 EG10910 (rpsK, b3297) -> 30S ribosomal subunit protein S11 EG10912 (rpsM, b3298) -> 30S ribosomal subunit protein S13 EG11232 (rpmJ, b3299) -> 50S ribosomal subunit protein L36 |
| Group 005 | Genes common to all candidates in group EG10323 (fliM, b1945) -> flagellar motor switch protein FliM EG10324 (fliN, b1946) -> flagellar motor switch protein FliN EG11347 (fliF, b1938) -> flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein EG11654 (fliG, b1939) -> flagellar motor switch protein FliG EG11975 (fliP, b1948) -> flagellar biosynthesis protein FliP EG11977 (fliR, b1950) -> flagellar biosynthesis protein FliR G358 (flgB, b1073) -> flagellar basal-body rod protein FlgB G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G360 (flgD, b1075) -> flagellar biosynthesis, initiation of hook assembly G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG G7028 (flhB, b1880) -> flagellar biosynthesis protein FlhB | |||||
| Candidate 0012 | 1.000 | 134 | 1.000 | 14 | Additional genes in candidate EG11346 (fliE, b1937) -> flagellar basal-body protein FliE G370 (flhA, b1879) -> flagellar biosynthesis protein FlhA G377 (fliI, b1941) -> flagellum-specific ATP synthase FliI | |
| Candidate 0011 | 1.000 | 136 | 0.857 | 14 | Additional genes in candidate G361 (flgE, b1076) -> flagellar hook protein FlgE G370 (flhA, b1879) -> flagellar biosynthesis protein FlhA G377 (fliI, b1941) -> flagellum-specific ATP synthase FliI | |
| Candidate 0015 | 1.000 | 124 | 0.769 | 13 | Additional genes in candidate EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 G361 (flgE, b1076) -> flagellar hook protein FlgE |
| Group 006 | Genes common to all candidates in group EG11085 (rsmH, b0082) -> 16S rRNA m4C1402 methyltransferase EG10623 (murG, b0090) -> N-acetylglucosaminyl transferase EG10622 (murF, b0086) -> D-alanyl-D-alanine-adding enzyme EG10621 (murE, b0085) -> UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase EG10620 (murD, b0088) -> UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase EG10619 (murC, b0091) -> UDP-N-acetylmuramate-alanine ligase EG10604 (mraY, b0087) -> phospho-N-acetylmuramoyl-pentapeptide transferase EG10347 (ftsZ, b0095) -> essential cell division protein FtsZ EG10341 (ftsI, b0084) -> essential cell division protein FtsI; penicillin-binding protein 3 EG10339 (ftsA, b0094) -> essential cell division protein FtsA | |||||
| Candidate 0025 | 1.000 | 81 | 1.000 | 11 | Additional genes in candidate EG12440 (mpl, b4233) -> UDP-N-acetylmuramate:L-alanyl-γ-D-glutamyl-meso-diaminopimelate ligase | |
| Candidate 0009 | 1.000 | 112 | 1.000 | 15 | Additional genes in candidate EG10214 (ddlB, b0092) -> ddlB EG10265 (lpxC, b0096) -> UDP-3-O-acyl-N-acetylglucosamine deacetylase EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10344 (ftsW, b0089) -> essential cell division protein FtsW EG11084 (mraZ, b0081) -> conserved protein |
| Group 007 | Genes common to all candidates in group EG10323 (fliM, b1945) -> flagellar motor switch protein FliM EG10324 (fliN, b1946) -> flagellar motor switch protein FliN EG11654 (fliG, b1939) -> flagellar motor switch protein FliG EG11975 (fliP, b1948) -> flagellar biosynthesis protein FliP EG11976 (fliQ, b1949) -> flagellar biosynthesis protein FliQ EG11977 (fliR, b1950) -> flagellar biosynthesis protein FliR G377 (fliI, b1941) -> flagellum-specific ATP synthase FliI | |||||
| Candidate 0037 | 1.000 | 12 | 1.000 | 10 | Additional genes in candidate EG10322 (fliL, b1944) -> flagellar biosynthesis G378 (fliJ, b1942) -> flagellar biosynthesis protein FliJ G379 (fliK, b1943) -> flagellar hook-length control protein FliK | |
| Candidate 0016 | 1.000 | 29 | 1.000 | 12 | Additional genes in candidate EG11346 (fliE, b1937) -> flagellar basal-body protein FliE EG11347 (fliF, b1938) -> flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein EG11656 (fliH, b1940) -> flagellar biosynthesis protein FliH G378 (fliJ, b1942) -> flagellar biosynthesis protein FliJ G379 (fliK, b1943) -> flagellar hook-length control protein FliK | |
| Candidate 0017 | 1.000 | 106 | 1.000 | 12 | Additional genes in candidate EG11346 (fliE, b1937) -> flagellar basal-body protein FliE EG11347 (fliF, b1938) -> flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein EG11355 (fliA, b1922) -> RNA polymerase, sigma 28 (sigma F) factor G370 (flhA, b1879) -> flagellar biosynthesis protein FlhA G7028 (flhB, b1880) -> flagellar biosynthesis protein FlhB |
| Group 008 | Genes common to all candidates in group EG10814 (rbsA, b3749) -> RbsA EG10816 (rbsC, b3750) -> RbsC EG11958 (alsC, b4086) -> AlsC EG12275 (xylG, b3567) -> XylG EG12439 (yjfF, b4231) -> YjfF EG12518 (ytfR, b4228 (obsolete)) -> YtfR EG12520 (ytfT, b4230) -> YtfT | |||||
| Candidate 0018 | 1.000 | 40 | 0.250 | 12 | Additional genes in candidate EG10058 (araG, b1900) -> AraG EG10815 (rbsB, b3751) -> RbsB EG10817 (rbsD, b3748) -> ribose pyranase EG11959 (alsA, b4087) -> AlsA G6800 (lsrA, b1513) -> LsrA | |
| Candidate 0014 | 1.000 | 45 | 0.154 | 13 | Additional genes in candidate EG10815 (rbsB, b3751) -> RbsB EG10817 (rbsD, b3748) -> ribose pyranase EG11959 (alsA, b4087) -> AlsA EG12517 (ytfQ, b4227) -> YtfQ G6800 (lsrA, b1513) -> LsrA G7340 (yphD, b2546) -> YphD | |
| Candidate 0052 | 1.000 | 18 | 0.000 | 9 | Additional genes in candidate EG12276 (xylH, b3568) -> XylH G7340 (yphD, b2546) -> YphD |
| Group 009 | Genes common to all candidates in group EG10139 (cdsA, b0175) -> CDP-diglyceride synthetase EG10335 (frr, b0172) -> ribosome recycling factor EG10901 (rpsB, b0169) -> 30S ribosomal subunit protein S2 EG11033 (tsf, b0170) -> protein chain elongation factor EF-Ts EG11539 (pyrH, b0171) -> PyrH EG12436 (rseP, b0176) -> RseP zinc protease EG12715 (dxr, b0173) -> Dxr G6092 (ispU, b0174) -> subunit of undecaprenyl diphosphate synthase | |||||
| Candidate 0041 | 1.000 | 28 | 1.000 | 10 | Additional genes in candidate EG10570 (map, b0168) -> methionine aminopeptidase EG11411 (glnD, b0167) -> uridylyltransferase / uridylyl-removing enzyme | |
| Candidate 0040 | 1.000 | 39 | 1.000 | 10 | Additional genes in candidate EG10570 (map, b0168) -> methionine aminopeptidase G6093 (bamA, bamA) -> BamA | |
| Candidate 0058 | 1.000 | 26 | 0.889 | 9 | Additional genes in candidate G6728 (ynbB, b1409) -> predicted CDP-diglyceride synthase | |
| Candidate 0027 | 1.000 | 23 | 1.000 | 11 | Additional genes in candidate EG10455 (hlpA, b0178) -> periplasmic chaperone EG10861 (rnhB, b0183) -> RNAse HII, degrades RNA of DNA-RNA hybrids EG11411 (glnD, b0167) -> uridylyltransferase / uridylyl-removing enzyme | |
| Candidate 0010 | 1.000 | 113 | 1.000 | 15 | Additional genes in candidate EG10316 (lpxD, b0179) -> UDP-3-O-[3-hydroxymyristoyl]glucosamine N-acetyltransferase EG10455 (hlpA, b0178) -> periplasmic chaperone EG10545 (lpxA, b0181) -> LpxA EG10546 (lpxB, b0182) -> LpxB EG10861 (rnhB, b0183) -> RNAse HII, degrades RNA of DNA-RNA hybrids EG11284 (fabZ, b0180) -> FabZ G6093 (bamA, bamA) -> BamA |
| Group 010 | Genes common to all candidates in group G6753 (ydcU, b1442) -> YdcU G6752 (ydcT, b1441) -> YdcT G6751 (ydcS, b1440) -> YdcS EG11632 (potI, b0857) -> PotI EG11631 (potH, b0856) -> PotH EG11630 (potG, b0855) -> PotG EG10752 (potD, b1123) -> PotD EG10751 (potC, b1124) -> PotC EG10750 (potB, b1125) -> PotB EG10749 (potA, b1126) -> PotA | |||||
| Candidate 0021 | 1.000 | 35 | 0.000 | 11 | Additional genes in candidate EG11629 (potF, b0854) -> PotF | |
| Candidate 0020 | 1.000 | 42 | 0.091 | 11 | Additional genes in candidate G6754 (ydcV, b1443) -> YdcV |
| Group 011 | Candidate 0026 | 1.000 | 48 | 0.000 | 11 | Genes in candidate EG10336 (fruA, b2167) -> FruA EG10337 (fruK, b2168) -> 1-phosphofructokinase monomer EG10700 (pfkB, b1723) -> 6-phosphofructokinase-2 monomer EG11863 (frvB, b3899) -> FrvB EG11864 (frvA, b3900) -> FrvA EG11908 (frwC, b3949) -> FrwC EG11909 (frwB, b3950) -> FrwB EG11912 (frwD, b3953) -> PTS system fructose-like IIB component 2 EG13235 (mngA, b0731) -> MngA G7249 (fryC, b2386) -> predicted enzyme IIC component of PTS G7250 (fryB, b2387) -> predicted enzyme IIB component of PTS |
| Group 012 | Candidate 0024 | 1.000 | 93 | 0.455 | 11 | Genes in candidate EG10469 (hyaB, b0973) -> hydrogenase 1, large subunit EG10483 (hypA, b2726) -> accessory protein for nickel incorporation into hydrogenase 3 EG10484 (hypB, b2727) -> accessory protein for nickel incorporation into hydrogenase isoenzymes EG10485 (hypC, b2728) -> protein involved in hydrogenase 3 maturation EG10486 (hypD, b2729) -> protein involved in maturation of hydrogenase isoenzymes EG10487 (hypE, b2730) -> HypE-S-carboxamide EG11551 (hypF, b2712) -> hydrogenase maturation protein, carbamoyltransferase EG11801 (hybC, b2994) -> hydrogenase 2, large subunit EG11804 (hybF, b2991) -> protein involved with the maturation of hydrogenases 1 and 2 EG11805 (hybG, b2990) -> hydrogenase 2 accessory protein G7554 (hybO, b2997) -> hydrogenase 2, small subunit |
| Group 013 | Genes common to all candidates in group G7304 (hyfG, b2487) -> hydrogenase 4, large subunit G7303 (hyfF, b2486) -> hydrogenase 4, component F EG12093 (nuoN, b2276) -> NADH:ubiquinone oxidoreductase, membrane subunit N EG12092 (nuoL, b2278) -> NADH:ubiquinone oxidoreductase, membrane subunit L EG12088 (nuoH, b2282) -> NADH:ubiquinone oxidoreductase, membrane subunit H EG11773 (nuoM, b2277) -> NADH:ubiquinone oxidoreductase, membrane subunit M EG10479 (hycF, b2720) -> formate hydrogenlyase complex iron-sulfur protein EG10478 (hycE, b2721) -> hydrogenase 3, large subunit EG10477 (hycD, b2722) -> hydrogenase 3, membrane subunit | |||||
| Candidate 0023 | 1.000 | 99 | 0.545 | 11 | Additional genes in candidate EG10480 (hycG, b2719) -> hydrogenase 3 and formate hydrogenlyase complex, HycG subunit G7306 (hyfI, b2489) -> hydrogenase 4, small subunit | |
| Candidate 0035 | 1.000 | 90 | 0.600 | 10 | Additional genes in candidate G7301 (hyfD, b2484) -> hydrogenase 4, component D |
| Group 014 | Genes common to all candidates in group EG10375 (mnmG, b3741) -> protein involved in a tRNA modification pathway EG10105 (atpH, b3735) -> ATP synthase, F1 complex, δ subunit EG10104 (atpG, b3733) -> ATP synthase, F1 complex, γ subunit EG10103 (atpF, b3736) -> ATP synthase, F0 complex, b subunit EG10102 (atpE, b3737) -> ATP synthase, F0 complex, c subunit EG10101 (atpD, b3732) -> ATP synthase, F1 complex, β subunit EG10100 (atpC, b3731) -> ATP synthase, F1 complex, ε subunit EG10099 (atpB, b3738) -> ATP synthase, F0 complex, a subunit EG10098 (atpA, b3734) -> ATP synthase, F1 complex, α subunit | |||||
| Candidate 0043 | 1.000 | 38 | 1.000 | 10 | Additional genes in candidate EG10376 (rsmG, b3740) -> 16S rRNA m7G527 methyltransferase | |
| Candidate 0042 | 1.000 | 37 | 1.000 | 10 | Additional genes in candidate EG11198 (glmU, b3730) -> GlmU |
| Group 015 | Genes common to all candidates in group EG50003 (acpP, b1094) -> trans-Δ3-cis-Δ5-dodecenoyl-ACP EG12606 (fabF, b1095) -> FabF EG11438 (yceF, b1087) -> predicted protein EG11437 (plsX, b1090) -> fatty acid/phospholipid synthesis protein EG11318 (fabG, b1093) -> 3-oxo-acyl-[acyl-carrier-protein] reductase EG11317 (fabD, b1092) -> malonyl-CoA-ACP transacylase EG11119 (yceD, b1088) -> conserved protein EG10890 (rpmF, b1089) -> 50S ribosomal subunit protein L32 EG10859 (rne, b1084) -> RNase E | |||||
| Candidate 0038 | 1.000 | 27 | 1.000 | 10 | Additional genes in candidate EG10277 (fabH, b1091) -> FabH | |
| Candidate 0032 | 1.000 | 26 | 1.000 | 10 | Additional genes in candidate EG11118 (rluC, b1086) -> 23S rRNA pseudouridine synthase |
| Group 016 | Candidate 0034 | 1.000 | 19 | 0.000 | 10 | Genes in candidate EG10638 (narG, b1224) -> nitrate reductase A, α subunit EG10639 (narH, b1225) -> nitrate reductase A, β subunit EG10640 (narI, b1227) -> nitrate reductase A, γ subunit EG10641 (narJ, b1226) -> molybdenum cofactor assembly chaperone subunit (δ subunit) of nitrate reductase 1 EG10642 (narK, b1223) -> NarK MFS nitrate/nitrite antiporter EG10644 (narV, b1465) -> nitrate reductase Z, γ subunit EG10645 (narW, b1466) -> NarW, probable private chaperone for NarZ nitrate reductase subunit EG10647 (narY, b1467) -> nitrate reductase Z, β subunit EG10648 (narZ, b1468) -> nitrate reductase Z, α subunit EG12153 (narU, b1469) -> NarU MFS nitrate/nitrite antiporter |
| Group 017 | Genes common to all candidates in group EG12520 (ytfT, b4230) -> YtfT EG11959 (alsA, b4087) -> AlsA EG11958 (alsC, b4086) -> AlsC EG10816 (rbsC, b3750) -> RbsC EG10814 (rbsA, b3749) -> RbsA | |||||
| Candidate 0044 | 1.000 | 29 | 0.300 | 10 | Additional genes in candidate EG10059 (araH, b1898 (obsolete)) -> high-affinity L-arabinose transport protein (ABC superfamily, membrane) EG10815 (rbsB, b3751) -> RbsB EG12439 (yjfF, b4231) -> YjfF G6801 (lsrC, b1514) -> LsrC G7340 (yphD, b2546) -> YphD | |
| Candidate 0033 | 1.000 | 31 | 0.300 | 10 | Additional genes in candidate EG10815 (rbsB, b3751) -> RbsB EG12439 (yjfF, b4231) -> YjfF G6800 (lsrA, b1513) -> LsrA G6801 (lsrC, b1514) -> LsrC G7340 (yphD, b2546) -> YphD | |
| Candidate 0029 | 1.000 | 41 | 0.182 | 11 | Additional genes in candidate EG10059 (araH, b1898 (obsolete)) -> high-affinity L-arabinose transport protein (ABC superfamily, membrane) EG10815 (rbsB, b3751) -> RbsB EG12439 (yjfF, b4231) -> YjfF EG12517 (ytfQ, b4227) -> YtfQ EG12518 (ytfR, b4228 (obsolete)) -> YtfR G7340 (yphD, b2546) -> YphD | |
| Candidate 0028 | 1.000 | 39 | 0.182 | 11 | Additional genes in candidate EG10059 (araH, b1898 (obsolete)) -> high-affinity L-arabinose transport protein (ABC superfamily, membrane) EG10815 (rbsB, b3751) -> RbsB EG12439 (yjfF, b4231) -> YjfF EG12517 (ytfQ, b4227) -> YtfQ G7340 (yphD, b2546) -> YphD G7342 (yphF, b2548) -> YphF | |
| Candidate 0046 | 1.000 | 31 | 0.200 | 10 | Additional genes in candidate EG10059 (araH, b1898 (obsolete)) -> high-affinity L-arabinose transport protein (ABC superfamily, membrane) EG10592 (mglA, b2149) -> MglA EG12517 (ytfQ, b4227) -> YtfQ EG12518 (ytfR, b4228 (obsolete)) -> YtfR G7340 (yphD, b2546) -> YphD | |
| Candidate 0045 | 1.000 | 28 | 0.300 | 10 | Additional genes in candidate EG10059 (araH, b1898 (obsolete)) -> high-affinity L-arabinose transport protein (ABC superfamily, membrane) EG10592 (mglA, b2149) -> MglA EG12517 (ytfQ, b4227) -> YtfQ G7340 (yphD, b2546) -> YphD G7342 (yphF, b2548) -> YphF | |
| Candidate 0048 | 1.000 | 31 | 0.200 | 10 | Additional genes in candidate EG10058 (araG, b1900) -> AraG EG10059 (araH, b1898 (obsolete)) -> high-affinity L-arabinose transport protein (ABC superfamily, membrane) EG10815 (rbsB, b3751) -> RbsB EG12439 (yjfF, b4231) -> YjfF EG12518 (ytfR, b4228 (obsolete)) -> YtfR | |
| Candidate 0060 | 1.000 | 19 | 0.111 | 9 | Additional genes in candidate EG10058 (araG, b1900) -> AraG EG10059 (araH, b1898 (obsolete)) -> high-affinity L-arabinose transport protein (ABC superfamily, membrane) EG10592 (mglA, b2149) -> MglA EG12518 (ytfR, b4228 (obsolete)) -> YtfR | |
| Candidate 0047 | 1.000 | 30 | 0.100 | 10 | Additional genes in candidate EG10058 (araG, b1900) -> AraG EG10592 (mglA, b2149) -> MglA EG12275 (xylG, b3567) -> XylG EG12518 (ytfR, b4228 (obsolete)) -> YtfR G6800 (lsrA, b1513) -> LsrA | |
| Candidate 0022 | 1.000 | 40 | 0.182 | 11 | Additional genes in candidate EG10592 (mglA, b2149) -> MglA EG12275 (xylG, b3567) -> XylG EG12517 (ytfQ, b4227) -> YtfQ EG12518 (ytfR, b4228 (obsolete)) -> YtfR G6800 (lsrA, b1513) -> LsrA G7340 (yphD, b2546) -> YphD | |
| Candidate 0059 | 1.000 | 17 | 0.111 | 9 | Additional genes in candidate EG10058 (araG, b1900) -> AraG EG10592 (mglA, b2149) -> MglA EG10594 (mglC, b2148) -> MglC G6800 (lsrA, b1513) -> LsrA | |
| Candidate 0054 | 1.000 | 17 | 0.222 | 9 | Additional genes in candidate EG10592 (mglA, b2149) -> MglA EG10594 (mglC, b2148) -> MglC EG12517 (ytfQ, b4227) -> YtfQ G6800 (lsrA, b1513) -> LsrA |
| Group 018 | Candidate 0039 | 1.000 | 51 | 1.000 | 10 | Genes in candidate EG10235 (dnaA, b3702) -> chromosomal replication initiator protein DnaA; DNA-binding transcriptional dual regulator EG10242 (dnaN, b3701) -> DnaN EG10375 (mnmG, b3741) -> protein involved in a tRNA modification pathway EG10376 (rsmG, b3740) -> 16S rRNA m7G527 methyltransferase EG10424 (gyrB, b3699) -> DNA gyrase, subunit B EG10828 (recF, b3700) -> ssDNA and dsDNA binding, ATP binding EG10862 (rnpA, b3704) -> RNase P protein component; processes tRNA, 4.5S RNA EG10892 (rpmH, b3703) -> 50S ribosomal subunit protein L34 EG10997 (mnmE, b3706) -> GTP-binding protein with a role in modification of tRNA EG11197 (yidC, b3705) -> inner-membrane protein insertion factor |
| Group 019 | Genes common to all candidates in group EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 G358 (flgB, b1073) -> flagellar basal-body rod protein FlgB G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G360 (flgD, b1075) -> flagellar biosynthesis, initiation of hook assembly G361 (flgE, b1076) -> flagellar hook protein FlgE G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG | |||||
| Candidate 0031 | 1.000 | 53 | 0.600 | 10 | Additional genes in candidate EG11975 (fliP, b1948) -> flagellar biosynthesis protein FliP G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein G365 (flgI, b1080) -> flagellar P-ring protein FlgI | |
| Candidate 0030 | 1.000 | 57 | 0.600 | 10 | Additional genes in candidate EG11975 (fliP, b1948) -> flagellar biosynthesis protein FliP G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein G7028 (flhB, b1880) -> flagellar biosynthesis protein FlhB | |
| Candidate 0036 | 1.000 | 60 | 0.600 | 10 | Additional genes in candidate EG10323 (fliM, b1945) -> flagellar motor switch protein FliM EG11975 (fliP, b1948) -> flagellar biosynthesis protein FliP G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF G7028 (flhB, b1880) -> flagellar biosynthesis protein FlhB | |
| Candidate 0019 | 1.000 | 53 | 0.636 | 11 | Additional genes in candidate EG11545 (flgL, b1083) -> flagellar biosynthesis; hook-filament junction protein G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein G365 (flgI, b1080) -> flagellar P-ring protein FlgI G366 (flgJ, b1081) -> FlgJ | |
| Candidate 0065 | 1.000 | 32 | 0.625 | 8 | Additional genes in candidate EG11545 (flgL, b1083) -> flagellar biosynthesis; hook-filament junction protein EG11654 (fliG, b1939) -> flagellar motor switch protein FliG |
| Group 020 | Candidate 0061 | 1.000 | 53 | 0.000 | 9 | Genes in candidate EG10028 (pflA, b0902) -> pyruvate formate-lyase activating enzyme EG10701 (pflB, b0903) -> PflB EG11784 (yfiD, b2579) -> stress-induced alternate pyruvate formate-lyase subunit EG11910 (pflD, b3951) -> formate acetyltransferase 2 EG11911 (pflC, b3952) -> probable pyruvate formate lyase 2 activating enzyme G6426 (ybiW, b0823) -> predicted pyruvate formate lyase G6427 (ybiY, b0824) -> predicted pyruvate formate lyase activating enzyme G7627 (tdcE, b3114) -> 2-ketobutyrate formate-lyase / pyruvate formate-lyase 4 G7953 (yjjW, b4379) -> predicted pyruvate formate lyase activating enzyme |
| Group 021 | Genes common to all candidates in group G7340 (yphD, b2546) -> YphD EG12517 (ytfQ, b4227) -> YtfQ EG11958 (alsC, b4086) -> AlsC EG10816 (rbsC, b3750) -> RbsC EG10815 (rbsB, b3751) -> RbsB EG10814 (rbsA, b3749) -> RbsA | |||||
| Candidate 0068 | 1.000 | 11 | 0.500 | 8 | Additional genes in candidate EG10817 (rbsD, b3748) -> ribose pyranase EG10818 (rbsK, b3752) -> ribokinase | |
| Candidate 0053 | 1.000 | 17 | 0.111 | 9 | Additional genes in candidate EG12275 (xylG, b3567) -> XylG EG12439 (yjfF, b4231) -> YjfF EG20252 (xylF, b3566) -> XylF |
| Group 022 | Genes common to all candidates in group EG12058 (ccmB, b2200) -> CcmB EG12057 (ccmC, b2199) -> CcmC EG12055 (ccmE, b2197) -> CcmE EG12054 (ccmF, b2196) -> cytochrome c-type biogenesis protein EG12053 (ccmG, b2195) -> CcmG EG12052 (ccmH, b2194) -> CcmH EG11948 (nrfE, b4074) -> formate-dependent nitrite reductase; possible assembly function | |||||
| Candidate 0063 | 1.000 | 16 | 0.500 | 8 | Additional genes in candidate EG11949 (nrfF, b4075) -> activator of formate-dependent nitrite reductase complex | |
| Candidate 0062 | 1.000 | 18 | 0.750 | 8 | Additional genes in candidate EG12059 (ccmA, b2201) -> CcmA |
| Group 023 | Genes common to all candidates in group EG10931 (sdhA, b0723) -> succinate dehydrogenase flavoprotein EG10932 (sdhB, b0724) -> succinate dehydrogenase iron-sulfur protein EG10933 (sdhC, b0721) -> succinate dehydrogenase membrane protein EG10934 (sdhD, b0722) -> succinate dehydrogenase membrane protein EG10979 (sucA, b0726) -> subunit of E1(0) component of 2-oxoglutarate dehydrogenase EG10980 (sucB, b0727) -> SucB | |||||
| Candidate 0076 | 1.000 | 26 | 0.500 | 8 | Additional genes in candidate EG10330 (frdA, b4154) -> fumarate reductase flavoprotein EG10331 (frdB, b4153) -> fumarate reductase iron-sulfur protein | |
| Candidate 0075 | 1.000 | 24 | 0.750 | 8 | Additional genes in candidate EG10331 (frdB, b4153) -> fumarate reductase iron-sulfur protein EG10402 (gltA, b0720) -> citrate synthase monomer | |
| Candidate 0066 | 1.000 | 27 | 1.000 | 8 | Additional genes in candidate EG10981 (sucC, b0728) -> succinyl-CoA synthetase, β subunit EG10982 (sucD, b0729) -> succinyl-CoA synthetase, α subunit |
| Group 024 | Genes common to all candidates in group EG10476 (hycC, b2723) -> hydrogenase 3, membrane subunit EG10477 (hycD, b2722) -> hydrogenase 3, membrane subunit EG10478 (hycE, b2721) -> hydrogenase 3, large subunit G7303 (hyfF, b2486) -> hydrogenase 4, component F G7304 (hyfG, b2487) -> hydrogenase 4, large subunit | |||||
| Candidate 0056 | 1.000 | 41 | 0.000 | 9 | Additional genes in candidate EG10480 (hycG, b2719) -> hydrogenase 3 and formate hydrogenlyase complex, HycG subunit EG11282 (hyfB, b2482) -> hydrogenase 4, component B G7300 (hyfC, b2483) -> hydrogenase 4, component C G7306 (hyfI, b2489) -> hydrogenase 4, small subunit | |
| Candidate 0055 | 1.000 | 30 | 0.222 | 9 | Additional genes in candidate EG11282 (hyfB, b2482) -> hydrogenase 4, component B G7300 (hyfC, b2483) -> hydrogenase 4, component C G7302 (hyfE, b2485) -> hydrogenase 4, component E G7306 (hyfI, b2489) -> hydrogenase 4, small subunit | |
| Candidate 0072 | 1.000 | 37 | 0.375 | 8 | Additional genes in candidate EG10479 (hycF, b2720) -> formate hydrogenlyase complex iron-sulfur protein EG10480 (hycG, b2719) -> hydrogenase 3 and formate hydrogenlyase complex, HycG subunit G7306 (hyfI, b2489) -> hydrogenase 4, small subunit | |
| Candidate 0107 | 1.000 | 27 | 0.571 | 7 | Additional genes in candidate EG10479 (hycF, b2720) -> formate hydrogenlyase complex iron-sulfur protein G7301 (hyfD, b2484) -> hydrogenase 4, component D | |
| Candidate 0106 | 1.000 | 28 | 0.286 | 7 | Additional genes in candidate EG11282 (hyfB, b2482) -> hydrogenase 4, component B G7301 (hyfD, b2484) -> hydrogenase 4, component D |
| Group 025 | Candidate 0073 | 1.000 | 73 | 1.000 | 8 | Genes in candidate EG10444 (hisA, b2024) -> N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase EG10445 (hisB, b2022) -> HisB EG10446 (hisC, b2021) -> HisC EG10447 (hisD, b2020) -> HisD EG10448 (hisF, b2025) -> imidazole glycerol phosphate synthase, HisF subunit EG10449 (hisG, b2019) -> HisG EG10450 (hisH, b2023) -> imidazole glycerol phosphate synthase, HisH subunit EG10451 (hisI, b2026) -> phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphatase |
| Group 026 | Genes common to all candidates in group G7326 (iscR, b2531) -> IscR transcriptional dual regulator G7325 (iscS, b2530) -> cysteine desulfurase monomer G7324 (iscU, b2529) -> scaffold protein involved in iron-sulfur cluster assembly EG12132 (iscA, b2528) -> iron-sulfur cluster assembly protein EG12131 (hscB, b2527) -> Hsc20 co-chaperone that acts with Hsc66 in IscU iron-sulfur cluster assembly EG11328 (fdx, b2525) -> oxidized ferredoxin | |||||
| Candidate 0049 | 1.000 | 24 | 0.778 | 9 | Additional genes in candidate EG11378 (sufA, b1684) -> Fe-S cluster assembly, scaffold protein EG12130 (hscA, b2526) -> chaperone, member of Hsp70 protein family EG12311 (iscX, b2524) -> protein with possible role in iron-sulfur cluster biogenesis | |
| Candidate 0095 | 1.000 | 11 | 1.000 | 7 | Additional genes in candidate G7327 (trmJ, b2532) -> tRNA:Cm32/Um32 methyltransferase |
| Group 027 | Candidate 0080 | 1.000 | 11 | 0.875 | 8 | Genes in candidate EG10271 (exbB, b3006) -> ExbB protein; uptake of enterochelin; tonB-dependent uptake of B colicins EG10684 (pal, b0741) -> Pal EG11008 (tolB, b0740) -> TolB EG11010 (tolQ, b0737) -> TolQ EG11011 (tolR, b0738) -> TolR EG11110 (ybgC, b0736) -> esterase/thioesterase EG12854 (ybgF, b0742) -> predicted periplasmic protein RUVB (ruvB, b1860) -> branch migration of Holliday structures; repair helicase |
| Group 028 | Candidate 0064 | 1.000 | 15 | 0.000 | 8 | Genes in candidate EG11677 (modF, b0760) -> ModF EG11767 (yhhJ, b3485) -> predicted transporter subunit: membrane component of ABC superfamily EG12223 (rbbA, b3486) -> ribosome-associated ATPase EG12224 (yhiI, b3487) -> predicted HlyD family secretion protein G6409 (ybhR, b0792) -> YbhR G6410 (ybhS, b0793) -> YbhS G6411 (ybhF, b0794) -> YbhF G6412 (ybhG, b0795) -> predicted membrane fusion protein |
| Group 029 | Genes common to all candidates in group G6780 (ddpB, b1486) -> YddR G6431 (gsiC, b0831) -> GsiC EG12625 (dppB, b3543) -> DppB EG10248 (dppA, b3544) -> DppA | |||||
| Candidate 0083 | 1.000 | 14 | 0.125 | 8 | Additional genes in candidate EG12626 (dppC, b3542) -> DppC G2000 (sapC, b1292) -> SapC G2001 (sapB, b1293) -> SapB G6779 (ddpC, b1485) -> YddQ | |
| Candidate 0082 | 1.000 | 15 | 0.125 | 8 | Additional genes in candidate EG12626 (dppC, b3542) -> DppC G2000 (sapC, b1292) -> SapC G6432 (gsiD, b0832) -> GsiD G6779 (ddpC, b1485) -> YddQ | |
| Candidate 0084 | 1.000 | 12 | 0.125 | 8 | Additional genes in candidate EG12626 (dppC, b3542) -> DppC G2000 (sapC, b1292) -> SapC G2001 (sapB, b1293) -> SapB G2002 (sapA, b1294) -> SapA | |
| Candidate 0117 | 1.000 | 10 | 0.000 | 7 | Additional genes in candidate G2001 (sapB, b1293) -> SapB G2002 (sapA, b1294) -> SapA G6430 (gsiB, b0830) -> GsiB |
| Group 030 | Genes common to all candidates in group EG10321 (fliC, b1923) -> flagellar biosynthesis; flagellin, filament structural protein EG10323 (fliM, b1945) -> flagellar motor switch protein FliM EG10324 (fliN, b1946) -> flagellar motor switch protein FliN EG11347 (fliF, b1938) -> flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein EG11654 (fliG, b1939) -> flagellar motor switch protein FliG | |||||
| Candidate 0114 | 1.000 | 29 | 1.000 | 7 | Additional genes in candidate EG11388 (fliS, b1925) -> flagellar biosynthesis protein FliS EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 | |
| Candidate 0113 | 1.000 | 31 | 1.000 | 7 | Additional genes in candidate EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG | |
| Candidate 0078 | 1.000 | 31 | 1.000 | 8 | Additional genes in candidate EG11346 (fliE, b1937) -> flagellar basal-body protein FliE EG11388 (fliS, b1925) -> flagellar biosynthesis protein FliS G377 (fliI, b1941) -> flagellum-specific ATP synthase FliI | |
| Candidate 0077 | 1.000 | 32 | 1.000 | 8 | Additional genes in candidate EG11346 (fliE, b1937) -> flagellar basal-body protein FliE G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG G377 (fliI, b1941) -> flagellum-specific ATP synthase FliI | |
| Candidate 0079 | 1.000 | 30 | 1.000 | 8 | Additional genes in candidate EG11346 (fliE, b1937) -> flagellar basal-body protein FliE EG11355 (fliA, b1922) -> RNA polymerase, sigma 28 (sigma F) factor G377 (fliI, b1941) -> flagellum-specific ATP synthase FliI |
| Group 031 | Genes common to all candidates in group EG12631 (gntU, b3435 (obsolete)) -> GntU gluconate Gnt transporter EG12563 (gntP, b4321) -> GntP Gluconate Gnt transporter EG12548 (yjhF, b4296) -> YjhF Gnt tranporter EG12539 (idnT, b4265) -> L-idonate / 5-ketogluconate / gluconate transporter EG12380 (gntT, b3415) -> GntT Gluconate Gnt transporter | |||||
| Candidate 0116 | 1.000 | 19 | 0.000 | 7 | Additional genes in candidate EG10250 (dsdX, b2365) -> DsdX Gnt tranporter G7421 (ygbN, b2740) -> YgbN Gnt transporter | |
| Candidate 0092 | 1.000 | 10 | 0.000 | 7 | Additional genes in candidate EG12152 (idnK, b4268) -> D-gluconate kinase, thermosensitive EG12629 (gntK, b3437) -> GntK |
| Group 032 | Candidate 0099 | 1.000 | 13 | 0.714 | 7 | Genes in candidate EG10662 (nth, b1633) -> endonuclease III; specific for apurinic and/or apyrimidinic sites G6871 (rsxA, b1627) -> integral membrane protein of SoxR-reducing complex G6872 (rsxB, b1628) -> member of SoxR-reducing complex G6873 (rsxC, b1629) -> member of SoxR-reducing complex G6874 (rsxD, b1630) -> integral membrane protein of SoxR-reducing complex G6875 (rsxG, b1631) -> member of SoxR-reducing complex G6876 (rsxE, b1632) -> integral membrane protein of SoxR-reducing complex |
| Group 033 | Genes common to all candidates in group EG10494 (ilvB, b3671) -> IlvB EG10499 (ilvH, brnP) -> IlvH EG10500 (ilvI, b0077) -> IlvI EG10502 (ilvN, b3670) -> IlvN EG11583 (gcl, b0507) -> Gcl | |||||
| Candidate 0103 | 1.000 | 43 | 0.571 | 7 | Additional genes in candidate EG10495 (ilvC, b3774) -> IlvC G7236 (oxc, b2373) -> oxalyl-CoA decarboxylase | |
| Candidate 0102 | 1.000 | 38 | 0.571 | 7 | Additional genes in candidate EG10754 (poxB, b0871) -> pyruvate oxidase monomer G7236 (oxc, b2373) -> oxalyl-CoA decarboxylase | |
| Candidate 0104 | 1.000 | 46 | 0.714 | 7 | Additional genes in candidate EG10495 (ilvC, b3774) -> IlvC EG11226 (leuA, b0074) -> 2-isopropylmalate synthase |
| Group 034 | Candidate 0108 | 1.000 | 38 | 0.714 | 7 | Genes in candidate EG10469 (hyaB, b0973) -> hydrogenase 1, large subunit EG10484 (hypB, b2727) -> accessory protein for nickel incorporation into hydrogenase isoenzymes EG11801 (hybC, b2994) -> hydrogenase 2, large subunit EG11802 (hybD, b2993) -> predicted maturation peptidase for hydrogenase 2 EG11804 (hybF, b2991) -> protein involved with the maturation of hydrogenases 1 and 2 EG11805 (hybG, b2990) -> hydrogenase 2 accessory protein G7554 (hybO, b2997) -> hydrogenase 2, small subunit |
| Group 035 | Candidate 0101 | 1.000 | 11 | 1.000 | 7 | Genes in candidate EG10505 (infB, b3168) -> protein chain initiation factor IF-2 EG10665 (nusA, b3169) -> transcription termination/antitermination L factor EG10743 (pnp, bfl) -> polynucleotide phosphorylase monomer EG10914 (rpsO, b3165) -> 30S ribosomal subunit protein S15 EG11177 (truB, b3166) -> tRNA pseudouridine 55 synthase EG11178 (rbfA, b3167) -> 30S ribosome binding factor EG11179 (rimP, b3170) -> ribosome maturation protein |
| Group 036 | Genes common to all candidates in group EG10468 (hyaA, b0972) -> hydrogenase 1, small subunit EG10469 (hyaB, b0973) -> hydrogenase 1, large subunit EG11801 (hybC, b2994) -> hydrogenase 2, large subunit G7554 (hybO, b2997) -> hydrogenase 2, small subunit | |||||
| Candidate 0109 | 1.000 | 36 | 0.143 | 7 | Additional genes in candidate EG10471 (hyaD, b0975) -> protein involved in processing of HyaA and HyaB proteins EG10484 (hypB, b2727) -> accessory protein for nickel incorporation into hydrogenase isoenzymes EG11802 (hybD, b2993) -> predicted maturation peptidase for hydrogenase 2 | |
| Candidate 0110 | 1.000 | 28 | 0.143 | 7 | Additional genes in candidate EG10470 (hyaC, b0974) -> hydrogenase 1, b-type cytochrome subunit EG10471 (hyaD, b0975) -> protein involved in processing of HyaA and HyaB proteins EG11802 (hybD, b2993) -> predicted maturation peptidase for hydrogenase 2 | |
| Candidate 0148 | 1.000 | 26 | 0.333 | 6 | Additional genes in candidate EG10484 (hypB, b2727) -> accessory protein for nickel incorporation into hydrogenase isoenzymes EG10487 (hypE, b2730) -> HypE-S-carboxamide |
| Group 037 | Candidate 0135 | 1.000 | 20 | 0.667 | 6 | Genes in candidate EG10979 (sucA, b0726) -> subunit of E1(0) component of 2-oxoglutarate dehydrogenase EG10980 (sucB, b0727) -> SucB EG10981 (sucC, b0728) -> succinyl-CoA synthetase, β subunit EG10982 (sucD, b0729) -> succinyl-CoA synthetase, α subunit G6185 (yahF, b0320) -> predicted acyl-CoA synthetase with NAD(P)-binding domain and succinyl-CoA synthetase domain G6287 (fdrA, b0518) -> involved in protein transport; multicopy suppressor of dominant negative ftsH mutants |
| Group 038 | Candidate 0127 | 1.000 | 11 | 0.167 | 6 | Genes in candidate EG11562 (fixA, b0041) -> probable flavoprotein subunit required for anaerobic carnitine metabolism EG11563 (fixB, b0042) -> probable flavoprotein subunit required for anaerobic carnitine metabolism G6920 (ydiQ, b1697) -> putative subunit of YdiQ-YdiR flavoprotein G6921 (ydiR, b1698) -> putative subunit of YdiQ-YdiR flavoprotein G7435 (ygcQ, b2769) -> predicted flavoprotein G7436 (ygcR, b2770) -> predicted flavoprotein |
| Group 039 | Candidate 0126 | 1.000 | 12 | 0.000 | 6 | Genes in candidate EG11564 (fixC, b0043) -> flavoprotein (electron transport), possibly involved in anaerobic carnitine metabolism EG11565 (fixX, b0044) -> putative ferredoxin possibly involved in anaerobic carnitine metabolism G6922 (ydiS, b1699) -> putative flavoprotein G6923 (ydiT, b1700) -> putative ferredoxin G7432 (ygcN, b2766) -> predicted oxidoreductase with FAD/NAD(P)-binding domain G7433 (ygcO, b2767) -> predicted 4Fe-4S cluster-containing protein |
| Group 040 | Candidate 0151 | 1.000 | 11 | 0.167 | 6 | Genes in candidate EG10403 (gltB, b3212) -> glutamate synthase, large subunit EG10404 (gltD, b3213) -> glutamate synthase, small subunit EG12409 (aegA, b2468) -> putative oxidoreductase, Fe-S subunit G7145 (yeiT, b2146) -> NADH-dependent dihydropyrimidine dehydrogenase subunit G7497 (ygfK, b2878) -> putative oxidoreductase Fe-S subunit; possible component of selenate reductase G7506 (ygfT, b2887) -> fused predicted oxidoreductase, Fe-S subunit and nucleotide-binding subunit |
| Group 041 | Genes common to all candidates in group EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 EG11654 (fliG, b1939) -> flagellar motor switch protein FliG EG11388 (fliS, b1925) -> flagellar biosynthesis protein FliS EG10841 (fliD, b1924) -> flagellar cap protein FliD; filament capping protein; enables filament assembly EG10321 (fliC, b1923) -> flagellar biosynthesis; flagellin, filament structural protein | |||||
| Candidate 0153 | 1.000 | 13 | 1.000 | 6 | Additional genes in candidate EG11347 (fliF, b1938) -> flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein | |
| Candidate 0152 | 1.000 | 13 | 1.000 | 6 | Additional genes in candidate EG11545 (flgL, b1083) -> flagellar biosynthesis; hook-filament junction protein |
| Group 042 | Candidate 0145 | 1.000 | 18 | 0.000 | 6 | Genes in candidate EG10578 (melB, b4120) -> MelB GPH transporter EG11658 (uidB, b1616) -> UidB glucuronides GPH transporter EG11686 (yicJ, b3657) -> YicJ GPH transporter EG11841 (yihO, b3876) -> YihO GPH transporter EG11842 (yihP, b3877) -> YihP GPH transporter G6142 (yagG, b0270) -> YagG GPH Transporter |
| Group 043 | Candidate 0167 | 1.000 | 37 | 0.000 | 6 | Genes in candidate EG10067 (argF, b0273) -> ArgF EG10069 (argI, b4254) -> ArgI EG12384 (ybcF, b0521) -> predicted carbamate kinase G6188 (yahI, b0323) -> predicted carbamate kinase-like protein G7489 (ygeW, b2870) -> putative carbamoyltransferase G7493 (yqeA, b2874) -> predicted amino acid kinase |
| Group 044 | Genes common to all candidates in group G7246 (fryA, b2383) -> fused predicted PTS system enzymes: Hpr component, enzyme I component, enzyme IIA component EG12399 (dhaM, b1198) -> dihydroxyacetone kinase subunit M EG11906 (ptsA, b3947) -> PEP-protein phosphotransferase system enzyme I EG10789 (ptsI, b2416) -> PTS enzyme I EG10788 (ptsH, b2415) -> HPr | |||||
| Candidate 0138 | 1.000 | 20 | 0.167 | 6 | Additional genes in candidate EG12188 (ptsP, b2829) -> PTS system, enzyme I, transcriptional regulator (with NPR and NTR proteins) | |
| Candidate 0137 | 1.000 | 25 | 0.333 | 6 | Additional genes in candidate G7990 (fruB, b2169) -> FruB |
| Group 045 | Candidate 0128 | 1.000 | 26 | 0.333 | 6 | Genes in candidate EG11453 (rffG, b3788) -> dTDP-glucose 4,6-dehydratase 2 EG11454 (rffH, b3789) -> dTDP-glucose pyrophosphorylase 2 EG11978 (rfbA, b2039) -> dTDP-glucose pyrophosphorylase EG11979 (rfbC, b2038) -> dTDP-4-dehydrorhamnose 3,5-epimerase EG12411 (rfbD, b2040) -> dTDP-4-dehydrorhamnose reductase EG12412 (rfbB, b2041) -> RmlB |
| Group 046 | Candidate 0263 | 1.000 | 11 | 0.000 | 5 | Genes in candidate EG10055 (araD, b0061) -> L-ribulose 5-phosphate 4-epimerase monomer EG10348 (fucA, b2800) -> FucA EG12287 (sgbE, b3583) -> L-ribulose-5-phosphate 4-epimerase G7419 (ygbL, b2738) -> predicted class II aldolase G7860 (ulaF, b4198) -> L-ribulose 5-phosphate 4-epimerase |
| Group 047 | Candidate 0231 | 1.000 | 15 | 0.600 | 5 | Genes in candidate EG10377 (glgA, b3429) -> glycogen synthase EG10378 (glgB, b3432) -> 1,4-α-glucan branching enzyme EG10379 (glgC, b3430) -> GlgC EG10380 (glgP, b3428) -> GlgP EG10560 (malP, blu) -> maltodextrin phosphorylase monomer |
| Group 048 | Candidate 0247 | 1.000 | 12 | 1.000 | 5 | Genes in candidate EG10238 (dnaE, b0184) -> DNA polymerase III, α subunit EG10316 (lpxD, b0179) -> UDP-3-O-[3-hydroxymyristoyl]glucosamine N-acetyltransferase EG10545 (lpxA, b0181) -> LpxA EG10546 (lpxB, b0182) -> LpxB EG10861 (rnhB, b0183) -> RNAse HII, degrades RNA of DNA-RNA hybrids |
| Group 049 | Candidate 0183 | 1.000 | 13 | 0.000 | 5 | Genes in candidate EG11563 (fixB, b0042) -> probable flavoprotein subunit required for anaerobic carnitine metabolism EG11564 (fixC, b0043) -> flavoprotein (electron transport), possibly involved in anaerobic carnitine metabolism G6921 (ydiR, b1698) -> putative subunit of YdiQ-YdiR flavoprotein G6922 (ydiS, b1699) -> putative flavoprotein G7432 (ygcN, b2766) -> predicted oxidoreductase with FAD/NAD(P)-binding domain |
| Group 050 | Candidate 0215 | 1.000 | 10 | 0.400 | 5 | Genes in candidate EG10660 (nrdA, b2234) -> NrdA EG10661 (nrdB, b2235) -> NrdB EG12381 (nrdF, b2676) -> NrdF EG20257 (nrdE, b2675) -> NrdE G7402 (nrdI, b2674) -> flavodoxin involved in diferric-tyrosyl radical cofactor maintenance for ribonucleotide reductase |
| Group 051 | Candidate 0382 | 1.000 | 10 | 0.000 | 4 | Genes in candidate EG10282 (fbaA, b2925) -> fructose bisphosphate aldolase monomer EG12419 (gatY, b2096) -> GatY EG12768 (kbaY, b3137) -> KbaY G6960 (ydjI, b1773) -> predicted aldolase |