| Num Enr Orgs (#Enr) | >= | 1 |
| Blast P-val (Blast) | >= | 0 |
| Max DoM C2P | >= | 0 |
| Max DoM C2P | <= | 1 |
| Max DoM P2C | >= | 0 |
| Max DoM P2C | <= | 1 |
| Num Genes (#Gen) | >= | 2 |
| Ave Score (Score) | >= | 0.99 |
Names in parenthesis indicate the short name used in the table below.
Interesting candidates are those with a high average score, at least a few enriched organisms and not a very low value of blast pval. A low value of blast pval indicates that most genes are paralogs of others in the group. Too few enriched organisms might mean that the group occured by pure chance.
The candidates are grouped by similarity in the genes they contain. The gene list on the top of each group indicates the genes that are common to all candidates in the group. The genes that are specific to a subset of candidates are listed besided the candidate id.
Groups are sorted by the average number of genes of the candidates included in it, from larger to smaller.
Click on the id of each candidate to see a very detailed report on its genes, their genome context scores, the enriched organisms, etc.
| Candidate ID | Score | #Enr | Blast | #Gen | Gene list (with product names) |
| Group 001 | Genes common to all candidates in group EG10766 (secY, b3300) -> SecY EG10865 (rplB, b3317) -> 50S ribosomal subunit protein L2 EG10867 (rplD, b3319) -> 50S ribosomal subunit protein L4 EG10868 (rplE, b3308) -> 50S ribosomal subunit protein L5 EG10869 (rplF, b3305) -> 50S ribosomal subunit protein L6 EG10875 (rplN, b3310) -> 50S ribosomal subunit protein L14 EG10878 (rplQ, b3294) -> 50S ribosomal subunit protein L17 EG10879 (rplR, b3304) -> 50S ribosomal subunit protein L18 EG10882 (rplV, b3315) -> 50S ribosomal subunit protein L22 EG10884 (rplX, b3309) -> 50S ribosomal subunit protein L24 EG10888 (rpmD, b3302) -> 50S ribosomal subunit protein L30 EG10893 (rpoA, b3295) -> RNA polymerase, α subunit EG10902 (rpsC, b3314) -> 30S ribosomal subunit protein S3 EG10904 (rpsE, b3303) -> 30S ribosomal subunit protein S5 EG10907 (rpsH, b3306) -> 30S ribosomal subunit protein S8 EG10910 (rpsK, b3297) -> 30S ribosomal subunit protein S11 EG10912 (rpsM, b3298) -> 30S ribosomal subunit protein S13 EG10916 (rpsQ, b3311) -> 30S ribosomal subunit protein S17 EG10918 (rpsS, b3316) -> 30S ribosomal subunit protein S19 | |||||
| Candidate 0003 | 1.000 | 262 | 1.000 | 31 | Additional genes in candidate EG10360 (fusA, b3340) -> elongation factor G EG10866 (rplC, b3320) -> 50S ribosomal subunit protein L3 EG10876 (rplO, b3301) -> 50S ribosomal subunit protein L15 EG10877 (rplP, b3313) -> 50S ribosomal subunit protein L16 EG10883 (rplW, b3318) -> 50S ribosomal subunit protein L23 EG10887 (rpmC, b3312) -> 50S ribosomal subunit protein L29 EG10903 (rpsD, b3296) -> 30S ribosomal subunit protein S4 EG10906 (rpsG, b3341) -> 30S ribosomal subunit protein S7 EG10909 (rpsJ, b3321) -> 30S ribosomal subunit protein S10 EG10911 (rpsL, b3342) -> 30S ribosomal subunit protein S12 EG10913 (rpsN, b3307) -> 30S ribosomal subunit protein S14 EG11232 (rpmJ, b3299) -> 50S ribosomal subunit protein L36 | |
| Candidate 0002 | 1.000 | 244 | 0.935 | 31 | Additional genes in candidate EG10360 (fusA, b3340) -> elongation factor G EG10866 (rplC, b3320) -> 50S ribosomal subunit protein L3 EG10876 (rplO, b3301) -> 50S ribosomal subunit protein L15 EG10877 (rplP, b3313) -> 50S ribosomal subunit protein L16 EG10883 (rplW, b3318) -> 50S ribosomal subunit protein L23 EG10887 (rpmC, b3312) -> 50S ribosomal subunit protein L29 EG10906 (rpsG, b3341) -> 30S ribosomal subunit protein S7 EG10909 (rpsJ, b3321) -> 30S ribosomal subunit protein S10 EG10911 (rpsL, b3342) -> 30S ribosomal subunit protein S12 EG10913 (rpsN, b3307) -> 30S ribosomal subunit protein S14 EG11036 (tufA, b3339) -> elongation factor Tu EG11037 (tufB, b3980) -> elongation factor Tu | |
| Candidate 0001 | 1.000 | 252 | 0.941 | 34 | Additional genes in candidate EG10360 (fusA, b3340) -> elongation factor G EG10866 (rplC, b3320) -> 50S ribosomal subunit protein L3 EG10871 (rplJ, b3985) -> 50S ribosomal subunit protein L10 EG10872 (rplK, b3983) -> 50S ribosomal subunit protein L11 EG10873 (rplL, b3986) -> 50S ribosomal subunit protein L7 EG10876 (rplO, b3301) -> 50S ribosomal subunit protein L15 EG10877 (rplP, b3313) -> 50S ribosomal subunit protein L16 EG10883 (rplW, b3318) -> 50S ribosomal subunit protein L23 EG10887 (rpmC, b3312) -> 50S ribosomal subunit protein L29 EG10894 (rpoB, b3987) -> RNA polymerase, β subunit EG10906 (rpsG, b3341) -> 30S ribosomal subunit protein S7 EG10909 (rpsJ, b3321) -> 30S ribosomal subunit protein S10 EG10911 (rpsL, b3342) -> 30S ribosomal subunit protein S12 EG11036 (tufA, b3339) -> elongation factor Tu EG11037 (tufB, b3980) -> elongation factor Tu | |
| Candidate 0000 | 1.000 | 276 | 0.944 | 36 | Additional genes in candidate EG10360 (fusA, b3340) -> elongation factor G EG10667 (nusG, b3982) -> transcription termination factor NusG EG10864 (rplA, b3984) -> 50S ribosomal subunit protein L1 EG10866 (rplC, b3320) -> 50S ribosomal subunit protein L3 EG10871 (rplJ, b3985) -> 50S ribosomal subunit protein L10 EG10872 (rplK, b3983) -> 50S ribosomal subunit protein L11 EG10873 (rplL, b3986) -> 50S ribosomal subunit protein L7 EG10877 (rplP, b3313) -> 50S ribosomal subunit protein L16 EG10883 (rplW, b3318) -> 50S ribosomal subunit protein L23 EG10887 (rpmC, b3312) -> 50S ribosomal subunit protein L29 EG10894 (rpoB, b3987) -> RNA polymerase, β subunit EG10895 (rpoC, b3988) -> RNA polymerase, β' subunit EG10906 (rpsG, b3341) -> 30S ribosomal subunit protein S7 EG10909 (rpsJ, b3321) -> 30S ribosomal subunit protein S10 EG10911 (rpsL, b3342) -> 30S ribosomal subunit protein S12 EG11036 (tufA, b3339) -> elongation factor Tu EG11037 (tufB, b3980) -> elongation factor Tu | |
| Candidate 0004 | 1.000 | 221 | 1.000 | 23 | Additional genes in candidate EG10504 (infA, bypA1) -> protein chain initiation factor IF-1 EG10876 (rplO, b3301) -> 50S ribosomal subunit protein L15 EG10903 (rpsD, b3296) -> 30S ribosomal subunit protein S4 EG11232 (rpmJ, b3299) -> 50S ribosomal subunit protein L36 |
| Group 002 | Genes common to all candidates in group EG10477 (hycD, b2722) -> hydrogenase 3, membrane subunit EG10478 (hycE, b2721) -> hydrogenase 3, large subunit EG10479 (hycF, b2720) -> formate hydrogenlyase complex iron-sulfur protein EG11773 (nuoM, b2277) -> NADH:ubiquinone oxidoreductase, membrane subunit M EG11774 (nuoF, b2284) -> NADH:ubiquinone oxidoreductase, chain F EG12082 (nuoA, b2288) -> NADH:ubiquinone oxidoreductase, membrane subunit A EG12083 (nuoB, b2287) -> NADH:ubiquinone oxidoreductase, chain B EG12084 (nuoC, b2286) -> NADH:ubiquinone oxidoreductase, chain CD EG12088 (nuoH, b2282) -> NADH:ubiquinone oxidoreductase, membrane subunit H EG12089 (nuoI, b2281) -> NADH:ubiquinone oxidoreductase, chain I EG12090 (nuoJ, b2280) -> NADH:ubiquinone oxidoreductase, membrane subunit J EG12092 (nuoL, b2278) -> NADH:ubiquinone oxidoreductase, membrane subunit L EG12093 (nuoN, b2276) -> NADH:ubiquinone oxidoreductase, membrane subunit N G7304 (hyfG, b2487) -> hydrogenase 4, large subunit G7305 (hyfH, b2488) -> hydrogenase 4, component H | |||||
| Candidate 0006 | 1.000 | 178 | 0.667 | 18 | Additional genes in candidate EG12086 (nuoE, b2285) -> NADH:ubiquinone oxidoreductase, chain E EG12087 (nuoG, b2283) -> NADH:ubiquinone oxidoreductase, chain G EG12091 (nuoK, b2279) -> NADH:ubiquinone oxidoreductase, membrane subunit K | |
| Candidate 0005 | 1.000 | 175 | 0.579 | 19 | Additional genes in candidate EG10480 (hycG, b2719) -> hydrogenase 3 and formate hydrogenlyase complex, HycG subunit EG12086 (nuoE, b2285) -> NADH:ubiquinone oxidoreductase, chain E EG12087 (nuoG, b2283) -> NADH:ubiquinone oxidoreductase, chain G G7306 (hyfI, b2489) -> hydrogenase 4, small subunit | |
| Candidate 0007 | 1.000 | 170 | 0.588 | 17 | Additional genes in candidate EG12091 (nuoK, b2279) -> NADH:ubiquinone oxidoreductase, membrane subunit K G7301 (hyfD, b2484) -> hydrogenase 4, component D |
| Group 003 | Candidate 0008 | 1.000 | 131 | 0.882 | 17 | Genes in candidate EG10360 (fusA, b3340) -> elongation factor G EG10667 (nusG, b3982) -> transcription termination factor NusG EG10864 (rplA, b3984) -> 50S ribosomal subunit protein L1 EG10865 (rplB, b3317) -> 50S ribosomal subunit protein L2 EG10866 (rplC, b3320) -> 50S ribosomal subunit protein L3 EG10871 (rplJ, b3985) -> 50S ribosomal subunit protein L10 EG10872 (rplK, b3983) -> 50S ribosomal subunit protein L11 EG10873 (rplL, b3986) -> 50S ribosomal subunit protein L7 EG10883 (rplW, b3318) -> 50S ribosomal subunit protein L23 EG10894 (rpoB, b3987) -> RNA polymerase, β subunit EG10895 (rpoC, b3988) -> RNA polymerase, β' subunit EG10906 (rpsG, b3341) -> 30S ribosomal subunit protein S7 EG10909 (rpsJ, b3321) -> 30S ribosomal subunit protein S10 EG10911 (rpsL, b3342) -> 30S ribosomal subunit protein S12 EG10939 (secE, b3981) -> SecE EG11036 (tufA, b3339) -> elongation factor Tu EG11037 (tufB, b3980) -> elongation factor Tu |
| Group 004 | Candidate 0013 | 1.000 | 133 | 1.000 | 14 | Genes in candidate EG10032 (adk, b0474) -> adenylate kinase EG10504 (infA, bypA1) -> protein chain initiation factor IF-1 EG10766 (secY, b3300) -> SecY EG10868 (rplE, b3308) -> 50S ribosomal subunit protein L5 EG10869 (rplF, b3305) -> 50S ribosomal subunit protein L6 EG10879 (rplR, b3304) -> 50S ribosomal subunit protein L18 EG10884 (rplX, b3309) -> 50S ribosomal subunit protein L24 EG10888 (rpmD, b3302) -> 50S ribosomal subunit protein L30 EG10893 (rpoA, b3295) -> RNA polymerase, α subunit EG10904 (rpsE, b3303) -> 30S ribosomal subunit protein S5 EG10907 (rpsH, b3306) -> 30S ribosomal subunit protein S8 EG10910 (rpsK, b3297) -> 30S ribosomal subunit protein S11 EG10912 (rpsM, b3298) -> 30S ribosomal subunit protein S13 EG11232 (rpmJ, b3299) -> 50S ribosomal subunit protein L36 |
| Group 005 | Genes common to all candidates in group EG10323 (fliM, b1945) -> flagellar motor switch protein FliM EG10324 (fliN, b1946) -> flagellar motor switch protein FliN EG11347 (fliF, b1938) -> flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein EG11654 (fliG, b1939) -> flagellar motor switch protein FliG EG11975 (fliP, b1948) -> flagellar biosynthesis protein FliP EG11977 (fliR, b1950) -> flagellar biosynthesis protein FliR G358 (flgB, b1073) -> flagellar basal-body rod protein FlgB G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G360 (flgD, b1075) -> flagellar biosynthesis, initiation of hook assembly G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG G7028 (flhB, b1880) -> flagellar biosynthesis protein FlhB | |||||
| Candidate 0012 | 1.000 | 134 | 1.000 | 14 | Additional genes in candidate EG11346 (fliE, b1937) -> flagellar basal-body protein FliE G370 (flhA, b1879) -> flagellar biosynthesis protein FlhA G377 (fliI, b1941) -> flagellum-specific ATP synthase FliI | |
| Candidate 0011 | 1.000 | 136 | 0.857 | 14 | Additional genes in candidate G361 (flgE, b1076) -> flagellar hook protein FlgE G370 (flhA, b1879) -> flagellar biosynthesis protein FlhA G377 (fliI, b1941) -> flagellum-specific ATP synthase FliI | |
| Candidate 0015 | 1.000 | 124 | 0.769 | 13 | Additional genes in candidate EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 G361 (flgE, b1076) -> flagellar hook protein FlgE |
| Group 006 | Genes common to all candidates in group EG11085 (rsmH, b0082) -> 16S rRNA m4C1402 methyltransferase EG10623 (murG, b0090) -> N-acetylglucosaminyl transferase EG10622 (murF, b0086) -> D-alanyl-D-alanine-adding enzyme EG10621 (murE, b0085) -> UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase EG10620 (murD, b0088) -> UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase EG10619 (murC, b0091) -> UDP-N-acetylmuramate-alanine ligase EG10604 (mraY, b0087) -> phospho-N-acetylmuramoyl-pentapeptide transferase EG10347 (ftsZ, b0095) -> essential cell division protein FtsZ EG10341 (ftsI, b0084) -> essential cell division protein FtsI; penicillin-binding protein 3 EG10339 (ftsA, b0094) -> essential cell division protein FtsA | |||||
| Candidate 0025 | 1.000 | 81 | 1.000 | 11 | Additional genes in candidate EG12440 (mpl, b4233) -> UDP-N-acetylmuramate:L-alanyl-γ-D-glutamyl-meso-diaminopimelate ligase | |
| Candidate 0009 | 1.000 | 112 | 1.000 | 15 | Additional genes in candidate EG10214 (ddlB, b0092) -> ddlB EG10265 (lpxC, b0096) -> UDP-3-O-acyl-N-acetylglucosamine deacetylase EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10344 (ftsW, b0089) -> essential cell division protein FtsW EG11084 (mraZ, b0081) -> conserved protein |
| Group 007 | Genes common to all candidates in group EG10323 (fliM, b1945) -> flagellar motor switch protein FliM EG10324 (fliN, b1946) -> flagellar motor switch protein FliN EG11654 (fliG, b1939) -> flagellar motor switch protein FliG EG11975 (fliP, b1948) -> flagellar biosynthesis protein FliP EG11976 (fliQ, b1949) -> flagellar biosynthesis protein FliQ EG11977 (fliR, b1950) -> flagellar biosynthesis protein FliR G377 (fliI, b1941) -> flagellum-specific ATP synthase FliI | |||||
| Candidate 0037 | 1.000 | 12 | 1.000 | 10 | Additional genes in candidate EG10322 (fliL, b1944) -> flagellar biosynthesis G378 (fliJ, b1942) -> flagellar biosynthesis protein FliJ G379 (fliK, b1943) -> flagellar hook-length control protein FliK | |
| Candidate 0016 | 1.000 | 29 | 1.000 | 12 | Additional genes in candidate EG11346 (fliE, b1937) -> flagellar basal-body protein FliE EG11347 (fliF, b1938) -> flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein EG11656 (fliH, b1940) -> flagellar biosynthesis protein FliH G378 (fliJ, b1942) -> flagellar biosynthesis protein FliJ G379 (fliK, b1943) -> flagellar hook-length control protein FliK | |
| Candidate 0017 | 1.000 | 106 | 1.000 | 12 | Additional genes in candidate EG11346 (fliE, b1937) -> flagellar basal-body protein FliE EG11347 (fliF, b1938) -> flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein EG11355 (fliA, b1922) -> RNA polymerase, sigma 28 (sigma F) factor G370 (flhA, b1879) -> flagellar biosynthesis protein FlhA G7028 (flhB, b1880) -> flagellar biosynthesis protein FlhB |
| Group 008 | Genes common to all candidates in group EG10139 (cdsA, b0175) -> CDP-diglyceride synthetase EG10335 (frr, b0172) -> ribosome recycling factor EG10901 (rpsB, b0169) -> 30S ribosomal subunit protein S2 EG11033 (tsf, b0170) -> protein chain elongation factor EF-Ts EG11539 (pyrH, b0171) -> PyrH EG12436 (rseP, b0176) -> RseP zinc protease EG12715 (dxr, b0173) -> Dxr G6092 (ispU, b0174) -> subunit of undecaprenyl diphosphate synthase | |||||
| Candidate 0041 | 1.000 | 28 | 1.000 | 10 | Additional genes in candidate EG10570 (map, b0168) -> methionine aminopeptidase EG11411 (glnD, b0167) -> uridylyltransferase / uridylyl-removing enzyme | |
| Candidate 0040 | 1.000 | 39 | 1.000 | 10 | Additional genes in candidate EG10570 (map, b0168) -> methionine aminopeptidase G6093 (bamA, bamA) -> BamA | |
| Candidate 0058 | 1.000 | 26 | 0.889 | 9 | Additional genes in candidate G6728 (ynbB, b1409) -> predicted CDP-diglyceride synthase | |
| Candidate 0027 | 1.000 | 23 | 1.000 | 11 | Additional genes in candidate EG10455 (hlpA, b0178) -> periplasmic chaperone EG10861 (rnhB, b0183) -> RNAse HII, degrades RNA of DNA-RNA hybrids EG11411 (glnD, b0167) -> uridylyltransferase / uridylyl-removing enzyme | |
| Candidate 0010 | 1.000 | 113 | 1.000 | 15 | Additional genes in candidate EG10316 (lpxD, b0179) -> UDP-3-O-[3-hydroxymyristoyl]glucosamine N-acetyltransferase EG10455 (hlpA, b0178) -> periplasmic chaperone EG10545 (lpxA, b0181) -> LpxA EG10546 (lpxB, b0182) -> LpxB EG10861 (rnhB, b0183) -> RNAse HII, degrades RNA of DNA-RNA hybrids EG11284 (fabZ, b0180) -> FabZ G6093 (bamA, bamA) -> BamA |
| Group 009 | Genes common to all candidates in group G6753 (ydcU, b1442) -> YdcU G6752 (ydcT, b1441) -> YdcT G6751 (ydcS, b1440) -> YdcS EG11632 (potI, b0857) -> PotI EG11631 (potH, b0856) -> PotH EG11630 (potG, b0855) -> PotG EG10752 (potD, b1123) -> PotD EG10751 (potC, b1124) -> PotC EG10750 (potB, b1125) -> PotB EG10749 (potA, b1126) -> PotA | |||||
| Candidate 0021 | 1.000 | 35 | 0.000 | 11 | Additional genes in candidate EG11629 (potF, b0854) -> PotF | |
| Candidate 0020 | 1.000 | 42 | 0.091 | 11 | Additional genes in candidate G6754 (ydcV, b1443) -> YdcV |
| Group 010 | Candidate 0024 | 1.000 | 93 | 0.455 | 11 | Genes in candidate EG10469 (hyaB, b0973) -> hydrogenase 1, large subunit EG10483 (hypA, b2726) -> accessory protein for nickel incorporation into hydrogenase 3 EG10484 (hypB, b2727) -> accessory protein for nickel incorporation into hydrogenase isoenzymes EG10485 (hypC, b2728) -> protein involved in hydrogenase 3 maturation EG10486 (hypD, b2729) -> protein involved in maturation of hydrogenase isoenzymes EG10487 (hypE, b2730) -> HypE-S-carboxamide EG11551 (hypF, b2712) -> hydrogenase maturation protein, carbamoyltransferase EG11801 (hybC, b2994) -> hydrogenase 2, large subunit EG11804 (hybF, b2991) -> protein involved with the maturation of hydrogenases 1 and 2 EG11805 (hybG, b2990) -> hydrogenase 2 accessory protein G7554 (hybO, b2997) -> hydrogenase 2, small subunit |
| Group 011 | Candidate 0026 | 1.000 | 48 | 0.000 | 11 | Genes in candidate EG10336 (fruA, b2167) -> FruA EG10337 (fruK, b2168) -> 1-phosphofructokinase monomer EG10700 (pfkB, b1723) -> 6-phosphofructokinase-2 monomer EG11863 (frvB, b3899) -> FrvB EG11864 (frvA, b3900) -> FrvA EG11908 (frwC, b3949) -> FrwC EG11909 (frwB, b3950) -> FrwB EG11912 (frwD, b3953) -> PTS system fructose-like IIB component 2 EG13235 (mngA, b0731) -> MngA G7249 (fryC, b2386) -> predicted enzyme IIC component of PTS G7250 (fryB, b2387) -> predicted enzyme IIB component of PTS |
| Group 012 | Genes common to all candidates in group G7304 (hyfG, b2487) -> hydrogenase 4, large subunit G7303 (hyfF, b2486) -> hydrogenase 4, component F EG12093 (nuoN, b2276) -> NADH:ubiquinone oxidoreductase, membrane subunit N EG12092 (nuoL, b2278) -> NADH:ubiquinone oxidoreductase, membrane subunit L EG12088 (nuoH, b2282) -> NADH:ubiquinone oxidoreductase, membrane subunit H EG11773 (nuoM, b2277) -> NADH:ubiquinone oxidoreductase, membrane subunit M EG10479 (hycF, b2720) -> formate hydrogenlyase complex iron-sulfur protein EG10478 (hycE, b2721) -> hydrogenase 3, large subunit EG10477 (hycD, b2722) -> hydrogenase 3, membrane subunit | |||||
| Candidate 0023 | 1.000 | 99 | 0.545 | 11 | Additional genes in candidate EG10480 (hycG, b2719) -> hydrogenase 3 and formate hydrogenlyase complex, HycG subunit G7306 (hyfI, b2489) -> hydrogenase 4, small subunit | |
| Candidate 0035 | 1.000 | 90 | 0.600 | 10 | Additional genes in candidate G7301 (hyfD, b2484) -> hydrogenase 4, component D |
| Group 013 | Genes common to all candidates in group EG12520 (ytfT, b4230) -> YtfT EG11959 (alsA, b4087) -> AlsA EG11958 (alsC, b4086) -> AlsC EG10816 (rbsC, b3750) -> RbsC EG10814 (rbsA, b3749) -> RbsA | |||||
| Candidate 0047 | 1.000 | 30 | 0.100 | 10 | Additional genes in candidate EG10058 (araG, b1900) -> AraG EG10592 (mglA, b2149) -> MglA EG12275 (xylG, b3567) -> XylG EG12518 (ytfR, b4228 (obsolete)) -> YtfR G6800 (lsrA, b1513) -> LsrA | |
| Candidate 0022 | 1.000 | 40 | 0.182 | 11 | Additional genes in candidate EG10592 (mglA, b2149) -> MglA EG12275 (xylG, b3567) -> XylG EG12517 (ytfQ, b4227) -> YtfQ EG12518 (ytfR, b4228 (obsolete)) -> YtfR G6800 (lsrA, b1513) -> LsrA G7340 (yphD, b2546) -> YphD | |
| Candidate 0059 | 1.000 | 17 | 0.111 | 9 | Additional genes in candidate EG10058 (araG, b1900) -> AraG EG10592 (mglA, b2149) -> MglA EG10594 (mglC, b2148) -> MglC G6800 (lsrA, b1513) -> LsrA | |
| Candidate 0054 | 1.000 | 17 | 0.222 | 9 | Additional genes in candidate EG10592 (mglA, b2149) -> MglA EG10594 (mglC, b2148) -> MglC EG12517 (ytfQ, b4227) -> YtfQ G6800 (lsrA, b1513) -> LsrA | |
| Candidate 0018 | 1.000 | 40 | 0.250 | 12 | Additional genes in candidate EG10058 (araG, b1900) -> AraG EG10815 (rbsB, b3751) -> RbsB EG10817 (rbsD, b3748) -> ribose pyranase EG12275 (xylG, b3567) -> XylG EG12439 (yjfF, b4231) -> YjfF EG12518 (ytfR, b4228 (obsolete)) -> YtfR G6800 (lsrA, b1513) -> LsrA | |
| Candidate 0014 | 1.000 | 45 | 0.154 | 13 | Additional genes in candidate EG10815 (rbsB, b3751) -> RbsB EG10817 (rbsD, b3748) -> ribose pyranase EG12275 (xylG, b3567) -> XylG EG12439 (yjfF, b4231) -> YjfF EG12517 (ytfQ, b4227) -> YtfQ EG12518 (ytfR, b4228 (obsolete)) -> YtfR G6800 (lsrA, b1513) -> LsrA G7340 (yphD, b2546) -> YphD | |
| Candidate 0044 | 1.000 | 29 | 0.300 | 10 | Additional genes in candidate EG10059 (araH, b1898 (obsolete)) -> high-affinity L-arabinose transport protein (ABC superfamily, membrane) EG10815 (rbsB, b3751) -> RbsB EG12439 (yjfF, b4231) -> YjfF G6801 (lsrC, b1514) -> LsrC G7340 (yphD, b2546) -> YphD | |
| Candidate 0033 | 1.000 | 31 | 0.300 | 10 | Additional genes in candidate EG10815 (rbsB, b3751) -> RbsB EG12439 (yjfF, b4231) -> YjfF G6800 (lsrA, b1513) -> LsrA G6801 (lsrC, b1514) -> LsrC G7340 (yphD, b2546) -> YphD | |
| Candidate 0029 | 1.000 | 41 | 0.182 | 11 | Additional genes in candidate EG10059 (araH, b1898 (obsolete)) -> high-affinity L-arabinose transport protein (ABC superfamily, membrane) EG10815 (rbsB, b3751) -> RbsB EG12439 (yjfF, b4231) -> YjfF EG12517 (ytfQ, b4227) -> YtfQ EG12518 (ytfR, b4228 (obsolete)) -> YtfR G7340 (yphD, b2546) -> YphD | |
| Candidate 0028 | 1.000 | 39 | 0.182 | 11 | Additional genes in candidate EG10059 (araH, b1898 (obsolete)) -> high-affinity L-arabinose transport protein (ABC superfamily, membrane) EG10815 (rbsB, b3751) -> RbsB EG12439 (yjfF, b4231) -> YjfF EG12517 (ytfQ, b4227) -> YtfQ G7340 (yphD, b2546) -> YphD G7342 (yphF, b2548) -> YphF | |
| Candidate 0046 | 1.000 | 31 | 0.200 | 10 | Additional genes in candidate EG10059 (araH, b1898 (obsolete)) -> high-affinity L-arabinose transport protein (ABC superfamily, membrane) EG10592 (mglA, b2149) -> MglA EG12517 (ytfQ, b4227) -> YtfQ EG12518 (ytfR, b4228 (obsolete)) -> YtfR G7340 (yphD, b2546) -> YphD | |
| Candidate 0045 | 1.000 | 28 | 0.300 | 10 | Additional genes in candidate EG10059 (araH, b1898 (obsolete)) -> high-affinity L-arabinose transport protein (ABC superfamily, membrane) EG10592 (mglA, b2149) -> MglA EG12517 (ytfQ, b4227) -> YtfQ G7340 (yphD, b2546) -> YphD G7342 (yphF, b2548) -> YphF | |
| Candidate 0048 | 1.000 | 31 | 0.200 | 10 | Additional genes in candidate EG10058 (araG, b1900) -> AraG EG10059 (araH, b1898 (obsolete)) -> high-affinity L-arabinose transport protein (ABC superfamily, membrane) EG10815 (rbsB, b3751) -> RbsB EG12439 (yjfF, b4231) -> YjfF EG12518 (ytfR, b4228 (obsolete)) -> YtfR | |
| Candidate 0060 | 1.000 | 19 | 0.111 | 9 | Additional genes in candidate EG10058 (araG, b1900) -> AraG EG10059 (araH, b1898 (obsolete)) -> high-affinity L-arabinose transport protein (ABC superfamily, membrane) EG10592 (mglA, b2149) -> MglA EG12518 (ytfR, b4228 (obsolete)) -> YtfR |
| Group 014 | Genes common to all candidates in group EG10375 (mnmG, b3741) -> protein involved in a tRNA modification pathway EG10105 (atpH, b3735) -> ATP synthase, F1 complex, δ subunit EG10104 (atpG, b3733) -> ATP synthase, F1 complex, γ subunit EG10103 (atpF, b3736) -> ATP synthase, F0 complex, b subunit EG10102 (atpE, b3737) -> ATP synthase, F0 complex, c subunit EG10101 (atpD, b3732) -> ATP synthase, F1 complex, β subunit EG10100 (atpC, b3731) -> ATP synthase, F1 complex, ε subunit EG10099 (atpB, b3738) -> ATP synthase, F0 complex, a subunit EG10098 (atpA, b3734) -> ATP synthase, F1 complex, α subunit | |||||
| Candidate 0043 | 1.000 | 38 | 1.000 | 10 | Additional genes in candidate EG10376 (rsmG, b3740) -> 16S rRNA m7G527 methyltransferase | |
| Candidate 0042 | 1.000 | 37 | 1.000 | 10 | Additional genes in candidate EG11198 (glmU, b3730) -> GlmU |
| Group 015 | Genes common to all candidates in group EG50003 (acpP, b1094) -> trans-Δ3-cis-Δ5-dodecenoyl-ACP EG12606 (fabF, b1095) -> FabF EG11438 (yceF, b1087) -> predicted protein EG11437 (plsX, b1090) -> fatty acid/phospholipid synthesis protein EG11318 (fabG, b1093) -> 3-oxo-acyl-[acyl-carrier-protein] reductase EG11317 (fabD, b1092) -> malonyl-CoA-ACP transacylase EG11119 (yceD, b1088) -> conserved protein EG10890 (rpmF, b1089) -> 50S ribosomal subunit protein L32 EG10859 (rne, b1084) -> RNase E | |||||
| Candidate 0038 | 1.000 | 27 | 1.000 | 10 | Additional genes in candidate EG10277 (fabH, b1091) -> FabH | |
| Candidate 0032 | 1.000 | 26 | 1.000 | 10 | Additional genes in candidate EG11118 (rluC, b1086) -> 23S rRNA pseudouridine synthase |
| Group 016 | Candidate 0034 | 1.000 | 19 | 0.000 | 10 | Genes in candidate EG10638 (narG, b1224) -> nitrate reductase A, α subunit EG10639 (narH, b1225) -> nitrate reductase A, β subunit EG10640 (narI, b1227) -> nitrate reductase A, γ subunit EG10641 (narJ, b1226) -> molybdenum cofactor assembly chaperone subunit (δ subunit) of nitrate reductase 1 EG10642 (narK, b1223) -> NarK MFS nitrate/nitrite antiporter EG10644 (narV, b1465) -> nitrate reductase Z, γ subunit EG10645 (narW, b1466) -> NarW, probable private chaperone for NarZ nitrate reductase subunit EG10647 (narY, b1467) -> nitrate reductase Z, β subunit EG10648 (narZ, b1468) -> nitrate reductase Z, α subunit EG12153 (narU, b1469) -> NarU MFS nitrate/nitrite antiporter |
| Group 017 | Candidate 0039 | 1.000 | 51 | 1.000 | 10 | Genes in candidate EG10235 (dnaA, b3702) -> chromosomal replication initiator protein DnaA; DNA-binding transcriptional dual regulator EG10242 (dnaN, b3701) -> DnaN EG10375 (mnmG, b3741) -> protein involved in a tRNA modification pathway EG10376 (rsmG, b3740) -> 16S rRNA m7G527 methyltransferase EG10424 (gyrB, b3699) -> DNA gyrase, subunit B EG10828 (recF, b3700) -> ssDNA and dsDNA binding, ATP binding EG10862 (rnpA, b3704) -> RNase P protein component; processes tRNA, 4.5S RNA EG10892 (rpmH, b3703) -> 50S ribosomal subunit protein L34 EG10997 (mnmE, b3706) -> GTP-binding protein with a role in modification of tRNA EG11197 (yidC, b3705) -> inner-membrane protein insertion factor |
| Group 018 | Genes common to all candidates in group G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG G361 (flgE, b1076) -> flagellar hook protein FlgE G360 (flgD, b1075) -> flagellar biosynthesis, initiation of hook assembly G359 (flgC, b1074) -> flagellar basal-body rod protein FlgC G358 (flgB, b1073) -> flagellar basal-body rod protein FlgB | |||||
| Candidate 0031 | 1.000 | 53 | 0.600 | 10 | Additional genes in candidate EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 EG11975 (fliP, b1948) -> flagellar biosynthesis protein FliP G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein G365 (flgI, b1080) -> flagellar P-ring protein FlgI | |
| Candidate 0030 | 1.000 | 57 | 0.600 | 10 | Additional genes in candidate EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 EG11975 (fliP, b1948) -> flagellar biosynthesis protein FliP G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein G7028 (flhB, b1880) -> flagellar biosynthesis protein FlhB | |
| Candidate 0036 | 1.000 | 60 | 0.600 | 10 | Additional genes in candidate EG10323 (fliM, b1945) -> flagellar motor switch protein FliM EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 EG11975 (fliP, b1948) -> flagellar biosynthesis protein FliP G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF G7028 (flhB, b1880) -> flagellar biosynthesis protein FlhB | |
| Candidate 0019 | 1.000 | 53 | 0.636 | 11 | Additional genes in candidate EG11545 (flgL, b1083) -> flagellar biosynthesis; hook-filament junction protein EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF G364 (flgH, b1079) -> flagellar L-ring protein FlgH; basal-body outer-membrane L (lipopolysaccharide layer) ring protein G365 (flgI, b1080) -> flagellar P-ring protein FlgI G366 (flgJ, b1081) -> FlgJ | |
| Candidate 0065 | 1.000 | 32 | 0.625 | 8 | Additional genes in candidate EG11545 (flgL, b1083) -> flagellar biosynthesis; hook-filament junction protein EG11654 (fliG, b1939) -> flagellar motor switch protein FliG EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 | |
| Candidate 0090 | 1.000 | 7 | 0.571 | 7 | Additional genes in candidate G357 (flgA, b1072) -> flagellar biosynthesis; assembly of basal-body periplasmic P ring G362 (flgF, b1077) -> flagellar basal-body rod protein FlgF |
| Group 019 | Genes common to all candidates in group G7665 (lptA, b3200) -> LptA G7663 (kdsC, b3198) -> 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase monomer G7662 (kdsD, b3197) -> D-arabinose 5-phosphate isomerase EG12146 (yhbJ, b3205) -> predicted P-loop containing ATPase EG11682 (ptsN, b3204) -> phosphotransferase system enzyme IIA, regulates N metabolism EG11681 (hpf, b3203) -> predicted ribosome-associated, sigma 54 modulation protein EG11680 (lptB, b3201) -> LptB EG10898 (rpoN, b3202) -> RNA polymerase, sigma 54 (sigma N) factor | |||||
| Candidate 0051 | 1.000 | 4 | 0.778 | 9 | Additional genes in candidate EG10973 (gutQ, b2708) -> D-arabinose 5-phosphate isomerase | |
| Candidate 0050 | 1.000 | 4 | 1.000 | 9 | Additional genes in candidate EG12147 (npr, b3206) -> phosphocarrier protein HPr-like NPr, nitrogen related, exchanges phosphate with Enzyme I, Hpr |
| Group 020 | Candidate 0061 | 1.000 | 53 | 0.000 | 9 | Genes in candidate EG10028 (pflA, b0902) -> pyruvate formate-lyase activating enzyme EG10701 (pflB, b0903) -> PflB EG11784 (yfiD, b2579) -> stress-induced alternate pyruvate formate-lyase subunit EG11910 (pflD, b3951) -> formate acetyltransferase 2 EG11911 (pflC, b3952) -> probable pyruvate formate lyase 2 activating enzyme G6426 (ybiW, b0823) -> predicted pyruvate formate lyase G6427 (ybiY, b0824) -> predicted pyruvate formate lyase activating enzyme G7627 (tdcE, b3114) -> 2-ketobutyrate formate-lyase / pyruvate formate-lyase 4 G7953 (yjjW, b4379) -> predicted pyruvate formate lyase activating enzyme |
| Group 021 | Genes common to all candidates in group EG10814 (rbsA, b3749) -> RbsA EG10816 (rbsC, b3750) -> RbsC EG11958 (alsC, b4086) -> AlsC EG12275 (xylG, b3567) -> XylG EG12439 (yjfF, b4231) -> YjfF G7340 (yphD, b2546) -> YphD | |||||
| Candidate 0067 | 1.000 | 4 | 0.125 | 8 | Additional genes in candidate EG12276 (xylH, b3568) -> XylH EG20252 (xylF, b3566) -> XylF | |
| Candidate 0052 | 1.000 | 18 | 0.000 | 9 | Additional genes in candidate EG12276 (xylH, b3568) -> XylH EG12518 (ytfR, b4228 (obsolete)) -> YtfR EG12520 (ytfT, b4230) -> YtfT | |
| Candidate 0053 | 1.000 | 17 | 0.111 | 9 | Additional genes in candidate EG10815 (rbsB, b3751) -> RbsB EG12517 (ytfQ, b4227) -> YtfQ EG20252 (xylF, b3566) -> XylF |
| Group 022 | Genes common to all candidates in group G377 (fliI, b1941) -> flagellum-specific ATP synthase FliI EG11654 (fliG, b1939) -> flagellar motor switch protein FliG EG11347 (fliF, b1938) -> flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein EG11346 (fliE, b1937) -> flagellar basal-body protein FliE EG10324 (fliN, b1946) -> flagellar motor switch protein FliN EG10323 (fliM, b1945) -> flagellar motor switch protein FliM | |||||
| Candidate 0078 | 1.000 | 31 | 1.000 | 8 | Additional genes in candidate EG10321 (fliC, b1923) -> flagellar biosynthesis; flagellin, filament structural protein EG11388 (fliS, b1925) -> flagellar biosynthesis protein FliS | |
| Candidate 0077 | 1.000 | 32 | 1.000 | 8 | Additional genes in candidate EG10321 (fliC, b1923) -> flagellar biosynthesis; flagellin, filament structural protein G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG | |
| Candidate 0079 | 1.000 | 30 | 1.000 | 8 | Additional genes in candidate EG10321 (fliC, b1923) -> flagellar biosynthesis; flagellin, filament structural protein EG11355 (fliA, b1922) -> RNA polymerase, sigma 28 (sigma F) factor | |
| Candidate 0057 | 1.000 | 9 | 1.000 | 9 | Additional genes in candidate EG11388 (fliS, b1925) -> flagellar biosynthesis protein FliS EG11656 (fliH, b1940) -> flagellar biosynthesis protein FliH G378 (fliJ, b1942) -> flagellar biosynthesis protein FliJ |
| Group 023 | Genes common to all candidates in group RUVB (ruvB, b1860) -> branch migration of Holliday structures; repair helicase EG11110 (ybgC, b0736) -> esterase/thioesterase EG11011 (tolR, b0738) -> TolR EG11010 (tolQ, b0737) -> TolQ EG11008 (tolB, b0740) -> TolB EG10684 (pal, b0741) -> Pal | |||||
| Candidate 0080 | 1.000 | 11 | 0.875 | 8 | Additional genes in candidate EG10271 (exbB, b3006) -> ExbB protein; uptake of enterochelin; tonB-dependent uptake of B colicins EG12854 (ybgF, b0742) -> predicted periplasmic protein | |
| Candidate 0071 | 1.000 | 9 | 1.000 | 8 | Additional genes in candidate EG10925 (ruvC, b1863) -> Holliday junction nuclease; resolution of structures; repair RUVA (ruvA, b1861) -> branch migration of Holliday structures; repair |
| Group 024 | Candidate 0064 | 1.000 | 15 | 0.000 | 8 | Genes in candidate EG11677 (modF, b0760) -> ModF EG11767 (yhhJ, b3485) -> predicted transporter subunit: membrane component of ABC superfamily EG12223 (rbbA, b3486) -> ribosome-associated ATPase EG12224 (yhiI, b3487) -> predicted HlyD family secretion protein G6409 (ybhR, b0792) -> YbhR G6410 (ybhS, b0793) -> YbhS G6411 (ybhF, b0794) -> YbhF G6412 (ybhG, b0795) -> predicted membrane fusion protein |
| Group 025 | Candidate 0069 | 1.000 | 3 | 1.000 | 8 | Genes in candidate EG10716 (phnG, b4101) -> carbon-phosphorous lyase complex subunit EG10717 (phnH, b4100) -> carbon-phosphorous lyase complex subunit EG10718 (phnI, b4099) -> carbon-phosphorus lyase complex subunit EG10719 (phnJ, b4098) -> carbon-phosphorous lyase complex subunit EG10720 (phnK, b4097) -> PhnK EG10721 (phnL, b4096) -> PhnL EG10722 (phnM, b4095) -> ATP-binding component of phosphonate transport EG10723 (phnN, b4094) -> ribose 1,5-bisphosphokinase |
| Group 026 | Genes common to all candidates in group EG11893 (dacD, b2010) -> DD-carboxypeptidase, penicillin-binding protein 6b EG11592 (ybeD, b0631) -> conserved protein EG11591 (lipB, b0630) -> lipoyl-protein ligase EG10854 (rlpA, b0633) -> rare lipoprotein RlpA EG10607 (mrdB, b0634) -> rod shape-determining membrane protein; sensitivity to radiation and drugs EG10203 (dacC, b0839) -> penicillin-binding protein 6 EG10201 (dacA, b0632) -> D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5 | |||||
| Candidate 0086 | 1.000 | 4 | 0.625 | 8 | Additional genes in candidate EG10606 (mrdA, b0635) -> cell shape; peptidoglycan synthetase; penicillin-binding protein 2 | |
| Candidate 0085 | 1.000 | 4 | 0.625 | 8 | Additional genes in candidate EG11306 (lipA, b0628) -> lipoate synthase monomer |
| Group 027 | Genes common to all candidates in group EG10931 (sdhA, b0723) -> succinate dehydrogenase flavoprotein EG10932 (sdhB, b0724) -> succinate dehydrogenase iron-sulfur protein EG10933 (sdhC, b0721) -> succinate dehydrogenase membrane protein EG10934 (sdhD, b0722) -> succinate dehydrogenase membrane protein EG10979 (sucA, b0726) -> subunit of E1(0) component of 2-oxoglutarate dehydrogenase EG10980 (sucB, b0727) -> SucB | |||||
| Candidate 0076 | 1.000 | 26 | 0.500 | 8 | Additional genes in candidate EG10330 (frdA, b4154) -> fumarate reductase flavoprotein EG10331 (frdB, b4153) -> fumarate reductase iron-sulfur protein | |
| Candidate 0075 | 1.000 | 24 | 0.750 | 8 | Additional genes in candidate EG10331 (frdB, b4153) -> fumarate reductase iron-sulfur protein EG10402 (gltA, b0720) -> citrate synthase monomer | |
| Candidate 0066 | 1.000 | 27 | 1.000 | 8 | Additional genes in candidate EG10981 (sucC, b0728) -> succinyl-CoA synthetase, β subunit EG10982 (sucD, b0729) -> succinyl-CoA synthetase, α subunit |
| Group 028 | Genes common to all candidates in group EG10476 (hycC, b2723) -> hydrogenase 3, membrane subunit EG10477 (hycD, b2722) -> hydrogenase 3, membrane subunit EG10478 (hycE, b2721) -> hydrogenase 3, large subunit G7303 (hyfF, b2486) -> hydrogenase 4, component F G7304 (hyfG, b2487) -> hydrogenase 4, large subunit | |||||
| Candidate 0056 | 1.000 | 41 | 0.000 | 9 | Additional genes in candidate EG10480 (hycG, b2719) -> hydrogenase 3 and formate hydrogenlyase complex, HycG subunit EG11282 (hyfB, b2482) -> hydrogenase 4, component B G7300 (hyfC, b2483) -> hydrogenase 4, component C G7306 (hyfI, b2489) -> hydrogenase 4, small subunit | |
| Candidate 0055 | 1.000 | 30 | 0.222 | 9 | Additional genes in candidate EG11282 (hyfB, b2482) -> hydrogenase 4, component B G7300 (hyfC, b2483) -> hydrogenase 4, component C G7302 (hyfE, b2485) -> hydrogenase 4, component E G7306 (hyfI, b2489) -> hydrogenase 4, small subunit | |
| Candidate 0072 | 1.000 | 37 | 0.375 | 8 | Additional genes in candidate EG10479 (hycF, b2720) -> formate hydrogenlyase complex iron-sulfur protein EG10480 (hycG, b2719) -> hydrogenase 3 and formate hydrogenlyase complex, HycG subunit G7306 (hyfI, b2489) -> hydrogenase 4, small subunit | |
| Candidate 0107 | 1.000 | 27 | 0.571 | 7 | Additional genes in candidate EG10479 (hycF, b2720) -> formate hydrogenlyase complex iron-sulfur protein G7301 (hyfD, b2484) -> hydrogenase 4, component D | |
| Candidate 0106 | 1.000 | 28 | 0.286 | 7 | Additional genes in candidate EG11282 (hyfB, b2482) -> hydrogenase 4, component B G7301 (hyfD, b2484) -> hydrogenase 4, component D |
| Group 029 | Candidate 0074 | 1.000 | 1 | 1.000 | 8 | Genes in candidate EG10341 (ftsI, b0084) -> essential cell division protein FtsI; penicillin-binding protein 3 EG10604 (mraY, b0087) -> phospho-N-acetylmuramoyl-pentapeptide transferase EG10620 (murD, b0088) -> UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase EG10621 (murE, b0085) -> UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase EG10622 (murF, b0086) -> D-alanyl-D-alanine-adding enzyme EG11084 (mraZ, b0081) -> conserved protein EG11085 (rsmH, b0082) -> 16S rRNA m4C1402 methyltransferase EG11086 (ftsL, b0083) -> essential cell division protein FtsL |
| Group 030 | Candidate 0073 | 1.000 | 73 | 1.000 | 8 | Genes in candidate EG10444 (hisA, b2024) -> N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase EG10445 (hisB, b2022) -> HisB EG10446 (hisC, b2021) -> HisC EG10447 (hisD, b2020) -> HisD EG10448 (hisF, b2025) -> imidazole glycerol phosphate synthase, HisF subunit EG10449 (hisG, b2019) -> HisG EG10450 (hisH, b2023) -> imidazole glycerol phosphate synthase, HisH subunit EG10451 (hisI, b2026) -> phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphatase |
| Group 031 | Candidate 0089 | 1.000 | 9 | 0.125 | 8 | Genes in candidate EG10014 (acrD, b2470) -> AcrD EG10266 (acrE, b3265) -> transmembrane protein affects septum formation and cell membrane permeability EG10267 (acrF, b3266) -> AcrF EG11703 (acrA, b0463) -> AcrA membrane fusion protein EG11704 (acrB, b0462) -> AcrB RND-type permease EG12240 (mdtE, b3513) -> MdtE EG12241 (mdtF, b3514) -> MdtF G6320 (cusC, b0572) -> outer membrane factor of the CusCFBA copper/silver efflux system |
| Group 032 | Genes common to all candidates in group G7326 (iscR, b2531) -> IscR transcriptional dual regulator G7325 (iscS, b2530) -> cysteine desulfurase monomer G7324 (iscU, b2529) -> scaffold protein involved in iron-sulfur cluster assembly EG12132 (iscA, b2528) -> iron-sulfur cluster assembly protein EG12131 (hscB, b2527) -> Hsc20 co-chaperone that acts with Hsc66 in IscU iron-sulfur cluster assembly EG11328 (fdx, b2525) -> oxidized ferredoxin | |||||
| Candidate 0049 | 1.000 | 24 | 0.778 | 9 | Additional genes in candidate EG11378 (sufA, b1684) -> Fe-S cluster assembly, scaffold protein EG12130 (hscA, b2526) -> chaperone, member of Hsp70 protein family EG12311 (iscX, b2524) -> protein with possible role in iron-sulfur cluster biogenesis | |
| Candidate 0095 | 1.000 | 11 | 1.000 | 7 | Additional genes in candidate G7327 (trmJ, b2532) -> tRNA:Cm32/Um32 methyltransferase |
| Group 033 | Candidate 0068 | 1.000 | 11 | 0.500 | 8 | Genes in candidate EG10814 (rbsA, b3749) -> RbsA EG10815 (rbsB, b3751) -> RbsB EG10816 (rbsC, b3750) -> RbsC EG10817 (rbsD, b3748) -> ribose pyranase EG10818 (rbsK, b3752) -> ribokinase EG11958 (alsC, b4086) -> AlsC EG12517 (ytfQ, b4227) -> YtfQ G7340 (yphD, b2546) -> YphD |
| Group 034 | Candidate 0070 | 1.000 | 1 | 0.750 | 8 | Genes in candidate EG10689 (pcm, b2743) -> L-isoaspartate protein carboxylmethyltransferase type II EG11816 (ispF, b2746) -> 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase monomer EG11817 (surE, b2744) -> broad specificity 5'(3')-nucleotidase and polyphosphatase EG12111 (nlpD, b2742) -> NlpD putative outer membrane lipoprotein G7422 (truD, b2745) -> tRNA pseudouridine 13 synthase G7423 (ispD, b2747) -> 4-diphosphocytidyl-2C-methyl-D-erythritol synthetase monomer G7424 (ftsB, b2748) -> essential cell division protein FtsB G7484 (ygeR, b2865) -> putative lipoprotein; predicted DNA-binding transcriptional regulator |
| Group 035 | Genes common to all candidates in group G6780 (ddpB, b1486) -> YddR G6431 (gsiC, b0831) -> GsiC G2000 (sapC, b1292) -> SapC EG12626 (dppC, b3542) -> DppC EG12625 (dppB, b3543) -> DppB | |||||
| Candidate 0083 | 1.000 | 14 | 0.125 | 8 | Additional genes in candidate EG10248 (dppA, b3544) -> DppA G2001 (sapB, b1293) -> SapB G6779 (ddpC, b1485) -> YddQ | |
| Candidate 0082 | 1.000 | 15 | 0.125 | 8 | Additional genes in candidate EG10248 (dppA, b3544) -> DppA G6432 (gsiD, b0832) -> GsiD G6779 (ddpC, b1485) -> YddQ | |
| Candidate 0084 | 1.000 | 12 | 0.125 | 8 | Additional genes in candidate EG10248 (dppA, b3544) -> DppA G2001 (sapB, b1293) -> SapB G2002 (sapA, b1294) -> SapA | |
| Candidate 0093 | 1.000 | 6 | 0.143 | 7 | Additional genes in candidate EG12076 (nikB, b3477) -> NikB G2001 (sapB, b1293) -> SapB |
| Group 036 | Genes common to all candidates in group EG11948 (nrfE, b4074) -> formate-dependent nitrite reductase; possible assembly function EG12052 (ccmH, b2194) -> CcmH EG12053 (ccmG, b2195) -> CcmG EG12054 (ccmF, b2196) -> cytochrome c-type biogenesis protein EG12055 (ccmE, b2197) -> CcmE | |||||
| Candidate 0063 | 1.000 | 16 | 0.500 | 8 | Additional genes in candidate EG11949 (nrfF, b4075) -> activator of formate-dependent nitrite reductase complex EG12057 (ccmC, b2199) -> CcmC EG12058 (ccmB, b2200) -> CcmB | |
| Candidate 0062 | 1.000 | 18 | 0.750 | 8 | Additional genes in candidate EG12057 (ccmC, b2199) -> CcmC EG12058 (ccmB, b2200) -> CcmB EG12059 (ccmA, b2201) -> CcmA | |
| Candidate 0094 | 1.000 | 1 | 0.429 | 7 | Additional genes in candidate EG11949 (nrfF, b4075) -> activator of formate-dependent nitrite reductase complex EG11950 (nrfG, b4076) -> NrfG |
| Group 037 | Genes common to all candidates in group EG10592 (mglA, b2149) -> MglA EG10814 (rbsA, b3749) -> RbsA EG11958 (alsC, b4086) -> AlsC EG11959 (alsA, b4087) -> AlsA G7341 (yphE, b2547) -> YphE | |||||
| Candidate 0087 | 1.000 | 7 | 0.125 | 8 | Additional genes in candidate EG10058 (araG, b1900) -> AraG EG10059 (araH, b1898 (obsolete)) -> high-affinity L-arabinose transport protein (ABC superfamily, membrane) EG12518 (ytfR, b4228 (obsolete)) -> YtfR | |
| Candidate 0119 | 0.999 | 4 | 0.286 | 7 | Additional genes in candidate EG10059 (araH, b1898 (obsolete)) -> high-affinity L-arabinose transport protein (ABC superfamily, membrane) G7342 (yphF, b2548) -> YphF | |
| Candidate 0120 | 1.000 | 3 | 0.286 | 7 | Additional genes in candidate EG10058 (araG, b1900) -> AraG EG10594 (mglC, b2148) -> MglC |
| Group 038 | Candidate 0118 | 1.000 | 3 | 0.571 | 7 | Genes in candidate EG10248 (dppA, b3544) -> DppA EG12304 (sapD, b1291) -> SapD EG12305 (sapF, b1290) -> SapF EG12626 (dppC, b3542) -> DppC G2000 (sapC, b1292) -> SapC G2001 (sapB, b1293) -> SapB G2002 (sapA, b1294) -> SapA |
| Group 039 | Candidate 0108 | 1.000 | 38 | 0.714 | 7 | Genes in candidate EG10469 (hyaB, b0973) -> hydrogenase 1, large subunit EG10484 (hypB, b2727) -> accessory protein for nickel incorporation into hydrogenase isoenzymes EG11801 (hybC, b2994) -> hydrogenase 2, large subunit EG11802 (hybD, b2993) -> predicted maturation peptidase for hydrogenase 2 EG11804 (hybF, b2991) -> protein involved with the maturation of hydrogenases 1 and 2 EG11805 (hybG, b2990) -> hydrogenase 2 accessory protein G7554 (hybO, b2997) -> hydrogenase 2, small subunit |
| Group 040 | Genes common to all candidates in group EG12380 (gntT, b3415) -> GntT Gluconate Gnt transporter EG12539 (idnT, b4265) -> L-idonate / 5-ketogluconate / gluconate transporter EG12548 (yjhF, b4296) -> YjhF Gnt tranporter EG12563 (gntP, b4321) -> GntP Gluconate Gnt transporter EG12631 (gntU, b3435 (obsolete)) -> GntU gluconate Gnt transporter | |||||
| Candidate 0092 | 1.000 | 10 | 0.000 | 7 | Additional genes in candidate EG12152 (idnK, b4268) -> D-gluconate kinase, thermosensitive EG12629 (gntK, b3437) -> GntK | |
| Candidate 0091 | 1.000 | 9 | 0.143 | 7 | Additional genes in candidate EG12629 (gntK, b3437) -> GntK G7421 (ygbN, b2740) -> YgbN Gnt transporter | |
| Candidate 0116 | 1.000 | 19 | 0.000 | 7 | Additional genes in candidate EG10250 (dsdX, b2365) -> DsdX Gnt tranporter G7421 (ygbN, b2740) -> YgbN Gnt transporter |
| Group 041 | Candidate 0115 | 1.000 | 4 | 1.000 | 7 | Genes in candidate EG10265 (lpxC, b0096) -> UDP-3-O-acyl-N-acetylglucosamine deacetylase EG10339 (ftsA, b0094) -> essential cell division protein FtsA EG10342 (ftsQ, b0093) -> essential cell division protein FtsQ EG10344 (ftsW, b0089) -> essential cell division protein FtsW EG10347 (ftsZ, b0095) -> essential cell division protein FtsZ EG10619 (murC, b0091) -> UDP-N-acetylmuramate-alanine ligase EG10936 (secA, b0098) -> SecA |
| Group 042 | Candidate 0099 | 1.000 | 13 | 0.714 | 7 | Genes in candidate EG10662 (nth, b1633) -> endonuclease III; specific for apurinic and/or apyrimidinic sites G6871 (rsxA, b1627) -> integral membrane protein of SoxR-reducing complex G6872 (rsxB, b1628) -> member of SoxR-reducing complex G6873 (rsxC, b1629) -> member of SoxR-reducing complex G6874 (rsxD, b1630) -> integral membrane protein of SoxR-reducing complex G6875 (rsxG, b1631) -> member of SoxR-reducing complex G6876 (rsxE, b1632) -> integral membrane protein of SoxR-reducing complex |
| Group 043 | Candidate 0111 | 1.000 | 5 | 1.000 | 7 | Genes in candidate EG10440 (ihfA, b1712) -> integration host factor (IHF), α subunit EG10506 (infC, b1718) -> protein chain initiation factor IF-3 EG10709 (pheS, b1714) -> phenylalanyl-tRNA synthetase α-chain EG10710 (pheT, b1713) -> phenylalanyl-tRNA synthetase β-chain EG10881 (rplT, b1716) -> 50S ribosomal subunit protein L20 EG11001 (thrS, b1719) -> threonyl-tRNA synthetase EG11231 (rpmI, b1717) -> 50S ribosomal subunit protein L35 |
| Group 044 | Candidate 0105 | 1.000 | 6 | 0.000 | 7 | Genes in candidate EG10491 (iclR, b4018) -> IclR transcriptional repressor EG12278 (yiaJ, b3574) -> YiaJ transcriptional repressor G6144 (yagI, b0272) -> CP4-6 prophage; predicted DNA-binding transcriptional regulator G6276 (allR, b0506) -> AllR transcriptional repressor G7003 (kdgR, b1827) -> KdgR transcriptional repressor G7161 (yfaX, b2248) -> predicted DNA-binding transcriptional regulator G7912 (yjhI, b4299) -> KpLE2 phage-like element; predicted DNA-binding transcriptional regulator |
| Group 045 | Genes common to all candidates in group EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 EG11654 (fliG, b1939) -> flagellar motor switch protein FliG EG11347 (fliF, b1938) -> flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein EG10324 (fliN, b1946) -> flagellar motor switch protein FliN EG10323 (fliM, b1945) -> flagellar motor switch protein FliM EG10321 (fliC, b1923) -> flagellar biosynthesis; flagellin, filament structural protein | |||||
| Candidate 0114 | 1.000 | 29 | 1.000 | 7 | Additional genes in candidate EG11388 (fliS, b1925) -> flagellar biosynthesis protein FliS | |
| Candidate 0113 | 1.000 | 31 | 1.000 | 7 | Additional genes in candidate G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG |
| Group 046 | Candidate 0101 | 1.000 | 11 | 1.000 | 7 | Genes in candidate EG10505 (infB, b3168) -> protein chain initiation factor IF-2 EG10665 (nusA, b3169) -> transcription termination/antitermination L factor EG10743 (pnp, bfl) -> polynucleotide phosphorylase monomer EG10914 (rpsO, b3165) -> 30S ribosomal subunit protein S15 EG11177 (truB, b3166) -> tRNA pseudouridine 55 synthase EG11178 (rbfA, b3167) -> 30S ribosome binding factor EG11179 (rimP, b3170) -> ribosome maturation protein |
| Group 047 | Genes common to all candidates in group G377 (fliI, b1941) -> flagellum-specific ATP synthase FliI EG11654 (fliG, b1939) -> flagellar motor switch protein FliG EG11388 (fliS, b1925) -> flagellar biosynthesis protein FliS EG11347 (fliF, b1938) -> flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein EG11346 (fliE, b1937) -> flagellar basal-body protein FliE EG10841 (fliD, b1924) -> flagellar cap protein FliD; filament capping protein; enables filament assembly | |||||
| Candidate 0112 | 1.000 | 9 | 1.000 | 7 | Additional genes in candidate EG10321 (fliC, b1923) -> flagellar biosynthesis; flagellin, filament structural protein | |
| Candidate 0098 | 1.000 | 2 | 1.000 | 7 | Additional genes in candidate EG11656 (fliH, b1940) -> flagellar biosynthesis protein FliH |
| Group 048 | Candidate 0096 | 1.000 | 5 | 0.000 | 7 | Genes in candidate EG10993 (tdh, b3616) -> Tdh EG12417 (gatD, b2091) -> galactitol-1-phosphate dehydrogenase G6838 (rspB, b1580) -> predicted oxidoreductase, Zn-dependent and NAD(P)-binding G6961 (ydjJ, b1774) -> predicted oxidoreductase, Zn-dependent and NAD(P)-binding G6963 (ydjL, b1776) -> predicted oxidoreductase, Zn-dependent and NAD(P)-binding G7893 (idnD, b4267) -> L-idonate 5-dehydrogenase G7945 (yjjN, b4358) -> predicted L-galactonate oxidoreductase |
| Group 049 | Genes common to all candidates in group EG10494 (ilvB, b3671) -> IlvB EG10499 (ilvH, brnP) -> IlvH EG10500 (ilvI, b0077) -> IlvI EG10502 (ilvN, b3670) -> IlvN EG11583 (gcl, b0507) -> Gcl | |||||
| Candidate 0103 | 1.000 | 43 | 0.571 | 7 | Additional genes in candidate EG10495 (ilvC, b3774) -> IlvC G7236 (oxc, b2373) -> oxalyl-CoA decarboxylase | |
| Candidate 0102 | 1.000 | 38 | 0.571 | 7 | Additional genes in candidate EG10754 (poxB, b0871) -> pyruvate oxidase monomer G7236 (oxc, b2373) -> oxalyl-CoA decarboxylase | |
| Candidate 0104 | 1.000 | 46 | 0.714 | 7 | Additional genes in candidate EG10495 (ilvC, b3774) -> IlvC EG11226 (leuA, b0074) -> 2-isopropylmalate synthase |
| Group 050 | Genes common to all candidates in group EG10468 (hyaA, b0972) -> hydrogenase 1, small subunit EG10469 (hyaB, b0973) -> hydrogenase 1, large subunit EG11801 (hybC, b2994) -> hydrogenase 2, large subunit G7554 (hybO, b2997) -> hydrogenase 2, small subunit | |||||
| Candidate 0109 | 1.000 | 36 | 0.143 | 7 | Additional genes in candidate EG10471 (hyaD, b0975) -> protein involved in processing of HyaA and HyaB proteins EG10484 (hypB, b2727) -> accessory protein for nickel incorporation into hydrogenase isoenzymes EG11802 (hybD, b2993) -> predicted maturation peptidase for hydrogenase 2 | |
| Candidate 0110 | 1.000 | 28 | 0.143 | 7 | Additional genes in candidate EG10470 (hyaC, b0974) -> hydrogenase 1, b-type cytochrome subunit EG10471 (hyaD, b0975) -> protein involved in processing of HyaA and HyaB proteins EG11802 (hybD, b2993) -> predicted maturation peptidase for hydrogenase 2 | |
| Candidate 0148 | 1.000 | 26 | 0.333 | 6 | Additional genes in candidate EG10484 (hypB, b2727) -> accessory protein for nickel incorporation into hydrogenase isoenzymes EG10487 (hypE, b2730) -> HypE-S-carboxamide |
| Group 051 | Genes common to all candidates in group G6780 (ddpB, b1486) -> YddR G6431 (gsiC, b0831) -> GsiC G6430 (gsiB, b0830) -> GsiB EG12625 (dppB, b3543) -> DppB EG10248 (dppA, b3544) -> DppA | |||||
| Candidate 0155 | 1.000 | 5 | 0.167 | 6 | Additional genes in candidate G6432 (gsiD, b0832) -> GsiD | |
| Candidate 0117 | 1.000 | 10 | 0.000 | 7 | Additional genes in candidate G2001 (sapB, b1293) -> SapB G2002 (sapA, b1294) -> SapA |
| Group 052 | Candidate 0147 | 1.000 | 1 | 1.000 | 6 | Genes in candidate EG10492 (ileS, b0026) -> isoleucyl-tRNA synthetase EG10548 (lspA, b0027) -> prolipoprotein signal peptidase II EG10919 (rpsT, b0023) -> 30S ribosomal subunit protein S20 EG11079 (ribF, b0025) -> bifunctional riboflavin kinase / FMN adenylyltransferase EG11080 (fkpB, b0028) -> peptidylprolyl isomerase EG11081 (ispH, b0029) -> 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase |
| Group 053 | Candidate 0140 | 1.000 | 5 | 0.667 | 6 | Genes in candidate EG10749 (potA, b1126) -> PotA EG10750 (potB, b1125) -> PotB EG10751 (potC, b1124) -> PotC EG10752 (potD, b1123) -> PotD EG12340 (afuC, b0262) -> CP4-6 prophage; predicted ferric transporter subunit/ATP-binding component of ABC superfamily G6752 (ydcT, b1441) -> YdcT |
| Group 054 | Candidate 0126 | 1.000 | 12 | 0.000 | 6 | Genes in candidate EG11564 (fixC, b0043) -> flavoprotein (electron transport), possibly involved in anaerobic carnitine metabolism EG11565 (fixX, b0044) -> putative ferredoxin possibly involved in anaerobic carnitine metabolism G6922 (ydiS, b1699) -> putative flavoprotein G6923 (ydiT, b1700) -> putative ferredoxin G7432 (ygcN, b2766) -> predicted oxidoreductase with FAD/NAD(P)-binding domain G7433 (ygcO, b2767) -> predicted 4Fe-4S cluster-containing protein |
| Group 055 | Candidate 0165 | 1.000 | 5 | 1.000 | 6 | Genes in candidate EG10100 (atpC, b3731) -> ATP synthase, F1 complex, ε subunit EG10101 (atpD, b3732) -> ATP synthase, F1 complex, β subunit EG10102 (atpE, b3737) -> ATP synthase, F0 complex, c subunit EG10104 (atpG, b3733) -> ATP synthase, F1 complex, γ subunit EG10382 (glmS, b3729) -> GlmS EG11198 (glmU, b3730) -> GlmU |
| Group 056 | Genes common to all candidates in group EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 EG11654 (fliG, b1939) -> flagellar motor switch protein FliG EG11388 (fliS, b1925) -> flagellar biosynthesis protein FliS EG10841 (fliD, b1924) -> flagellar cap protein FliD; filament capping protein; enables filament assembly EG10321 (fliC, b1923) -> flagellar biosynthesis; flagellin, filament structural protein | |||||
| Candidate 0153 | 1.000 | 13 | 1.000 | 6 | Additional genes in candidate EG11347 (fliF, b1938) -> flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein | |
| Candidate 0152 | 1.000 | 13 | 1.000 | 6 | Additional genes in candidate EG11545 (flgL, b1083) -> flagellar biosynthesis; hook-filament junction protein |
| Group 057 | Candidate 0169 | 1.000 | 4 | 0.333 | 6 | Genes in candidate EG10004 (dfp, b3639) -> Dfp EG10886 (rpmB, b3637) -> 50S ribosomal subunit protein L28 EG11312 (yicR, b3638) -> hypothetical protein G6122 (ykfG, b0247) -> CP4-6 prophage; predicted DNA repair protein G7082 (yeeS, b2002) -> CP4-44 prophage; predicted DNA repair protein G7379 (yfjY, b2644) -> CP4-57 prophage; predicted DNA repair protein |
| Group 058 | Candidate 0159 | 1.000 | 1 | 0.333 | 6 | Genes in candidate EG10183 (cysA, b2422) -> CysA EG10195 (cysP, b2425) -> CysP EG10197 (cysU, b2424) -> CysU EG10198 (cysW, b2423) -> CysW EG10929 (sbp, b3917) -> Sbp G6137 (afuB, b0263) -> AfuB |
| Group 059 | Genes common to all candidates in group G7246 (fryA, b2383) -> fused predicted PTS system enzymes: Hpr component, enzyme I component, enzyme IIA component EG12399 (dhaM, b1198) -> dihydroxyacetone kinase subunit M EG11906 (ptsA, b3947) -> PEP-protein phosphotransferase system enzyme I EG10789 (ptsI, b2416) -> PTS enzyme I EG10788 (ptsH, b2415) -> HPr | |||||
| Candidate 0138 | 1.000 | 20 | 0.167 | 6 | Additional genes in candidate EG12188 (ptsP, b2829) -> PTS system, enzyme I, transcriptional regulator (with NPR and NTR proteins) | |
| Candidate 0137 | 1.000 | 25 | 0.333 | 6 | Additional genes in candidate G7990 (fruB, b2169) -> FruB |
| Group 060 | Candidate 0154 | 1.000 | 2 | 1.000 | 6 | Genes in candidate EG10300 (ffh, b2610) -> protein component of the signal recognition particle (SRP) EG10880 (rplS, b2606) -> 50S ribosomal subunit protein L19 EG10915 (rpsP, b2609) -> 30S ribosomal subunit protein S16 EG11023 (trmD, b2607) -> TrmD EG11153 (rimM, b2608) -> ribosome maturation protein G7355 (ypjD, b2611) -> predicted inner membrane protein |
| Group 061 | Genes common to all candidates in group EG12661 (gltJ, b0654) -> GltJ EG12663 (gltL, b0652) -> GltL EG12835 (yhdX, b3269) -> YhdX EG12837 (yhdZ, b3271) -> YhdZ | |||||
| Candidate 0124 | 1.000 | 1 | 0.333 | 6 | Additional genes in candidate EG12834 (yhdW, b3268) -> YhdW EG12836 (yhdY, b3270) -> YhdY | |
| Candidate 0123 | 1.000 | 1 | 0.167 | 6 | Additional genes in candidate EG12834 (yhdW, b3268) -> YhdW G6359 (gltI, b0655) -> GltI | |
| Candidate 0125 | 1.000 | 1 | 0.333 | 6 | Additional genes in candidate EG12662 (gltK, b0653) -> GltK G6359 (gltI, b0655) -> GltI |
| Group 062 | Candidate 0146 | 1.000 | 7 | 0.667 | 6 | Genes in candidate EG10536 (livF, b3454) -> LivF EG10537 (livG, b3455) -> LivG EG10538 (livH, b3457) -> LivH EG10539 (livJ, b3460) -> LivJ EG10540 (livK, b3458) -> LivK, leucine binding protein of the high-affinity branched-chain amino acid transport system EG10541 (livM, b3456) -> LivM |
| Group 063 | Genes common to all candidates in group G6777 (ddpF, b1483) -> YddO EG12628 (dppF, b3540) -> DppF EG12627 (dppD, b3541) -> DppD EG10678 (oppF, b1247) -> OppF EG10677 (oppD, b1246) -> OppD | |||||
| Candidate 0142 | 1.000 | 9 | 0.167 | 6 | Additional genes in candidate EG12304 (sapD, b1291) -> SapD | |
| Candidate 0141 | 1.000 | 5 | 0.167 | 6 | Additional genes in candidate G6778 (ddpD, b1484) -> YddP |
| Group 064 | Candidate 0158 | 1.000 | 1 | 1.000 | 6 | Genes in candidate EG10247 (acpS, b2563) -> AcpS EG10270 (era, b2566) -> GTP-binding protein EG10530 (lepB, b2568) -> leader peptidase (signal peptidase I) EG10693 (pdxJ, b2564) -> PdxJ EG10832 (recO, b2565) -> protein interacts with RecR and possibly RecF proteins EG10857 (rnc, b2567) -> RNase III |
| Group 065 | Candidate 0139 | 1.000 | 1 | 1.000 | 6 | Genes in candidate EG10774 (prs, b1207) -> ribose-phosphate diphosphokinase EG10785 (pth, b1204) -> peptidyl-tRNA hydrolase EG10885 (rplY, b2185) -> 50S ribosomal subunit protein L25 EG11293 (lolB, b1209) -> outer membrane lipoprotein, localization of lipoproteins in the outer membrane EG11294 (ispE, b1208) -> IspE EG11404 (ychF, b1203) -> putative GTP-binding protein |
| Group 066 | Candidate 0145 | 1.000 | 18 | 0.000 | 6 | Genes in candidate EG10578 (melB, b4120) -> MelB GPH transporter EG11658 (uidB, b1616) -> UidB glucuronides GPH transporter EG11686 (yicJ, b3657) -> YicJ GPH transporter EG11841 (yihO, b3876) -> YihO GPH transporter EG11842 (yihP, b3877) -> YihP GPH transporter G6142 (yagG, b0270) -> YagG GPH Transporter |
| Group 067 | Candidate 0167 | 1.000 | 37 | 0.000 | 6 | Genes in candidate EG10067 (argF, b0273) -> ArgF EG10069 (argI, b4254) -> ArgI EG12384 (ybcF, b0521) -> predicted carbamate kinase G6188 (yahI, b0323) -> predicted carbamate kinase-like protein G7489 (ygeW, b2870) -> putative carbamoyltransferase G7493 (yqeA, b2874) -> predicted amino acid kinase |
| Group 068 | Candidate 0143 | 1.000 | 4 | 0.500 | 6 | Genes in candidate EG10674 (oppA, b1243) -> OppA-oligopeptide ABC transporter substrate-binding EG10675 (oppB, b1244) -> OppB EG10676 (oppC, b1245) -> OppC EG10677 (oppD, b1246) -> OppD G6665 (mppA, b1329) -> periplasmic murein tripeptide binding protein G7570 (ygiS, b3020) -> predicted transporter subunit |
| Group 069 | Candidate 0157 | 1.000 | 1 | 0.667 | 6 | Genes in candidate EG10248 (dppA, b3544) -> DppA EG12304 (sapD, b1291) -> SapD EG12305 (sapF, b1290) -> SapF EG12626 (dppC, b3542) -> DppC EG12627 (dppD, b3541) -> DppD EG12628 (dppF, b3540) -> DppF |
| Group 070 | Candidate 0164 | 1.000 | 7 | 0.667 | 6 | Genes in candidate EG10117 (bioA, bioA) -> adenosylmethionine-8-amino-7-oxononanoate aminotransferase monomer EG10118 (bioB, bioB) -> biotin synthase monomer EG10119 (bioC, bioC) -> BioC methyltransferase EG10120 (bioD, bioD) -> dethiobiotin synthetase monomer EG10121 (bioF, bioF) -> 8-amino-7-oxononanoate synthase monomer G6851 (ynfK, b1593) -> predicted dethiobiotin synthetase |
| Group 071 | Candidate 0151 | 1.000 | 11 | 0.167 | 6 | Genes in candidate EG10403 (gltB, b3212) -> glutamate synthase, large subunit EG10404 (gltD, b3213) -> glutamate synthase, small subunit EG12409 (aegA, b2468) -> putative oxidoreductase, Fe-S subunit G7145 (yeiT, b2146) -> NADH-dependent dihydropyrimidine dehydrogenase subunit G7497 (ygfK, b2878) -> putative oxidoreductase Fe-S subunit; possible component of selenate reductase G7506 (ygfT, b2887) -> fused predicted oxidoreductase, Fe-S subunit and nucleotide-binding subunit |
| Group 072 | Candidate 0150 | 1.000 | 2 | 1.000 | 6 | Genes in candidate EG10415 (greA, b3181) -> transcription elongation factor GreA EG11506 (ftsH, b3178) -> ATP-dependent zinc metalloprotease FtsH EG11507 (rlmE, b3179) -> 23S rRNA 2'-O-ribose U2552 methyltransferase EG11553 (glmM, b3176) -> phosphoglucosamine mutase EG12794 (yhbY, b3180) -> predicted RNA-binding protein EG50011 (folP, b3177) -> FolP |
| Group 073 | Candidate 0166 | 1.000 | 1 | 1.000 | 6 | Genes in candidate EG10099 (atpB, b3738) -> ATP synthase, F0 complex, a subunit EG10103 (atpF, b3736) -> ATP synthase, F0 complex, b subunit EG10104 (atpG, b3733) -> ATP synthase, F1 complex, γ subunit EG10375 (mnmG, b3741) -> protein involved in a tRNA modification pathway EG10376 (rsmG, b3740) -> 16S rRNA m7G527 methyltransferase EG11197 (yidC, b3705) -> inner-membrane protein insertion factor |
| Group 074 | Candidate 0128 | 1.000 | 26 | 0.333 | 6 | Genes in candidate EG11453 (rffG, b3788) -> dTDP-glucose 4,6-dehydratase 2 EG11454 (rffH, b3789) -> dTDP-glucose pyrophosphorylase 2 EG11978 (rfbA, b2039) -> dTDP-glucose pyrophosphorylase EG11979 (rfbC, b2038) -> dTDP-4-dehydrorhamnose 3,5-epimerase EG12411 (rfbD, b2040) -> dTDP-4-dehydrorhamnose reductase EG12412 (rfbB, b2041) -> RmlB |
| Group 075 | Candidate 0156 | 1.000 | 2 | 0.667 | 6 | Genes in candidate EG10248 (dppA, b3544) -> DppA EG12625 (dppB, b3543) -> DppB EG12626 (dppC, b3542) -> DppC EG12627 (dppD, b3541) -> DppD EG12628 (dppF, b3540) -> DppF G6780 (ddpB, b1486) -> YddR |
| Group 076 | Candidate 0162 | 1.000 | 9 | 1.000 | 6 | Genes in candidate EG10158 (clpP, b0437) -> ClpP EG10159 (clpX, b0438) -> ClpX EG10467 (hupB, b0440) -> transcriptional dual regulator HU-β, NS1 (HU-1) EG10542 (lon, b0439) -> Lon EG11003 (tig, b0436) -> trigger factor; a molecular chaperone involved in cell division G6242 (ppiD, b0441) -> periplasmic folding helper protein |
| Group 077 | Candidate 0135 | 1.000 | 20 | 0.667 | 6 | Genes in candidate EG10979 (sucA, b0726) -> subunit of E1(0) component of 2-oxoglutarate dehydrogenase EG10980 (sucB, b0727) -> SucB EG10981 (sucC, b0728) -> succinyl-CoA synthetase, β subunit EG10982 (sucD, b0729) -> succinyl-CoA synthetase, α subunit G6185 (yahF, b0320) -> predicted acyl-CoA synthetase with NAD(P)-binding domain and succinyl-CoA synthetase domain G6287 (fdrA, b0518) -> involved in protein transport; multicopy suppressor of dominant negative ftsH mutants |
| Group 078 | Candidate 0127 | 1.000 | 11 | 0.167 | 6 | Genes in candidate EG11562 (fixA, b0041) -> probable flavoprotein subunit required for anaerobic carnitine metabolism EG11563 (fixB, b0042) -> probable flavoprotein subunit required for anaerobic carnitine metabolism G6920 (ydiQ, b1697) -> putative subunit of YdiQ-YdiR flavoprotein G6921 (ydiR, b1698) -> putative subunit of YdiQ-YdiR flavoprotein G7435 (ygcQ, b2769) -> predicted flavoprotein G7436 (ygcR, b2770) -> predicted flavoprotein |
| Group 079 | Candidate 0122 | 1.000 | 1 | 0.000 | 6 | Genes in candidate G6212 (insC-1, b0360) -> IS2 element protein InsA G6724 (insC-2, b1403) -> IS2 element protein InsA G7077 (insC-3, b1997) -> IS2 element protein InsA G7481 (insC-4, b2861) -> IS2 element protein InsA G7583 (insC-5, b3044) -> IS2 element protein InsA G7894 (insC-6, b4272) -> IS2 element protein InsA |
| Group 080 | Candidate 0161 | 1.000 | 5 | 0.833 | 6 | Genes in candidate EG10168 (lnt, b0657) -> apolipoprotein N-acyltransferase EG11734 (phoH, b1020) -> ATP-binding protein G6361 (ybeX, b0658) -> predicted ion transport protein G6362 (ybeY, b0659) -> conserved protein involved in translation G6363 (ybeZ, b0660) -> predicted protein with nucleoside triphosphate hydrolase domain G6364 (miaB, b0661) -> isopentenyl-adenosine A37 tRNA methylthiolase MiaB |
| Group 081 | Candidate 0121 | 0.999 | 1 | 0.000 | 6 | Genes in candidate G6213 (insD-1, b0361) -> IS2 element protein G6723 (insD-2, b1402) -> IS2 element protein G7076 (insD-3, b1996) -> IS2 element protein G7480 (insD-4, b2860) -> IS2 element protein G7584 (insD-5, b3045) -> IS2 element protein G7895 (insD-6, b4273) -> IS2 element protein |
| Group 082 | Genes common to all candidates in group G6909 (sufB, b1683) -> SufB component of SufBCD Fe-S cluster scaffold complex G6908 (sufC, b1682) -> SufC component of SufBCD Fe-S cluster scaffold complex G6907 (sufD, b1681) -> SufD component of SufBCD Fe-S cluster scaffold complex G6906 (sufS, b1680) -> L-selenocysteine lyase (and L-cysteine desulfurase) monomer | |||||
| Candidate 0170 | 1.000 | 6 | 0.800 | 5 | Additional genes in candidate G7454 (csdA, b2810) -> cysteine sulfinate desulfinase | |
| Candidate 0130 | 1.000 | 5 | 1.000 | 6 | Additional genes in candidate EG11378 (sufA, b1684) -> Fe-S cluster assembly, scaffold protein G7324 (iscU, b2529) -> scaffold protein involved in iron-sulfur cluster assembly |
| Group 083 | Genes common to all candidates in group G7402 (nrdI, b2674) -> flavodoxin involved in diferric-tyrosyl radical cofactor maintenance for ribonucleotide reductase EG20257 (nrdE, b2675) -> NrdE EG12381 (nrdF, b2676) -> NrdF EG10660 (nrdA, b2234) -> NrdA | |||||
| Candidate 0215 | 1.000 | 10 | 0.400 | 5 | Additional genes in candidate EG10661 (nrdB, b2235) -> NrdB | |
| Candidate 0214 | 1.000 | 3 | 0.800 | 5 | Additional genes in candidate G7401 (nrdH, b2673) -> glutaredoxin-like protein |
| Group 084 | Candidate 0226 | 1.000 | 7 | 1.000 | 5 | Genes in candidate EG10465 (ribB, b3041) -> 3,4-dihydroxy-2-butanone 4-phosphate synthase EG11321 (ribD, b0414) -> fused diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase EG11322 (ribE, b0415) -> RibE EG11331 (ribA, b1277) -> GTP cyclohydrolase II EG11406 (ribC, b1662) -> RibC |
| Group 085 | Candidate 0255 | 1.000 | 2 | 1.000 | 5 | Genes in candidate EG10146 (cheA, b1888) -> CheA(S) EG10147 (cheB, b1883) -> CheB-Pasp EG10150 (cheY, b1882) -> CheY-acetylated EG10151 (cheZ, b1881) -> CheZ G370 (flhA, b1879) -> flagellar biosynthesis protein FlhA |
| Group 086 | Candidate 0189 | 1.000 | 6 | 1.000 | 5 | Genes in candidate EG11024 (trpA, b1260) -> tryptophan synthase, α subunit EG11025 (trpB, b1261) -> tryptophan synthase, β subunit EG11026 (trpC, b1262) -> indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase EG11027 (trpD, b1263) -> anthranilate synthase component II EG11028 (trpE, b1264) -> anthranilate synthase component I |
| Group 087 | Candidate 0263 | 1.000 | 11 | 0.000 | 5 | Genes in candidate EG10055 (araD, b0061) -> L-ribulose 5-phosphate 4-epimerase monomer EG10348 (fucA, b2800) -> FucA EG12287 (sgbE, b3583) -> L-ribulose-5-phosphate 4-epimerase G7419 (ygbL, b2738) -> predicted class II aldolase G7860 (ulaF, b4198) -> L-ribulose 5-phosphate 4-epimerase |
| Group 088 | Candidate 0183 | 1.000 | 13 | 0.000 | 5 | Genes in candidate EG11563 (fixB, b0042) -> probable flavoprotein subunit required for anaerobic carnitine metabolism EG11564 (fixC, b0043) -> flavoprotein (electron transport), possibly involved in anaerobic carnitine metabolism G6921 (ydiR, b1698) -> putative subunit of YdiQ-YdiR flavoprotein G6922 (ydiS, b1699) -> putative flavoprotein G7432 (ygcN, b2766) -> predicted oxidoreductase with FAD/NAD(P)-binding domain |
| Group 089 | Candidate 0254 | 1.000 | 2 | 1.000 | 5 | Genes in candidate EG10150 (cheY, b1882) -> CheY-acetylated EG11355 (fliA, b1922) -> RNA polymerase, sigma 28 (sigma F) factor EG11977 (fliR, b1950) -> flagellar biosynthesis protein FliR G370 (flhA, b1879) -> flagellar biosynthesis protein FlhA G7028 (flhB, b1880) -> flagellar biosynthesis protein FlhB |
| Group 090 | Candidate 0188 | 1.000 | 1 | 0.800 | 5 | Genes in candidate EG11226 (leuA, b0074) -> 2-isopropylmalate synthase EG11575 (leuD, b0071) -> LeuD EG11576 (leuC, b0072) -> LeuC EG11577 (leuB, b0073) -> LeuB G6986 (dmlA, b1800) -> D-malate dehydrogenase (decarboxylating) |
| Group 091 | Candidate 0247 | 1.000 | 12 | 1.000 | 5 | Genes in candidate EG10238 (dnaE, b0184) -> DNA polymerase III, α subunit EG10316 (lpxD, b0179) -> UDP-3-O-[3-hydroxymyristoyl]glucosamine N-acetyltransferase EG10545 (lpxA, b0181) -> LpxA EG10546 (lpxB, b0182) -> LpxB EG10861 (rnhB, b0183) -> RNAse HII, degrades RNA of DNA-RNA hybrids |
| Group 092 | Genes common to all candidates in group EG10298 (fepG, b0589) -> FepG EG10296 (fepD, b0590) -> FepD EG10295 (fepC, b0588) -> FepC EG10290 (fecE, b4287) -> FecE | |||||
| Candidate 0236 | 1.000 | 1 | 0.600 | 5 | Additional genes in candidate EG10289 (fecD, b4288) -> FecD | |
| Candidate 0235 | 1.000 | 1 | 0.400 | 5 | Additional genes in candidate EG10304 (fhuC, b0151) -> FhuC |
| Group 093 | Candidate 0182 | 1.000 | 9 | 0.000 | 5 | Genes in candidate EG11613 (eptA, b4114) -> predicted metal-dependent hydrolase EG11914 (yijP, b3955) -> conserved inner membrane protein EG12267 (eptB, b3546) -> phosphoethanolamine transferase G6418 (ybiP, b0815) -> predicted hydrolase, inner membrane G7655 (yhbX, b3173) -> predicted hydrolase, inner membrane |
| Group 094 | Candidate 0172 | 1.000 | 1 | 0.000 | 5 | Genes in candidate G6169 (insF-1, b0299) -> IS3 element protein InsF G6223 (insF-2, b0372) -> IS3 element protein InsF G6297 (insF-3, b0541) -> IS3 element protein InsF G6533 (insF-4, b1026) -> IS3 element protein InsF G7126 (insF-5, b2089) -> IS3 element protein InsF |
| Group 095 | Candidate 0178 | 1.000 | 1 | 0.000 | 5 | Genes in candidate EG12179 (cspE, b0623) -> transcription antiterminator and regulator of RNA stability EG12205 (cspF, b1558) -> Qin prophage; cold shock protein G6510 (cspH, b0989) -> stress protein, member of the CspA family G6511 (cspG, b0990) -> cold shock protein CspG G6825 (cspI, b1552) -> Qin prophage; cold shock protein |
| Group 096 | Candidate 0258 | 1.000 | 1 | 0.000 | 5 | Genes in candidate EG10124 (bisC, bisC) -> biotin sulfoxide reductase EG10232 (dmsA, b0894) -> dimethyl sulfoxide reductase, chain A EG11814 (torA, b0997) -> trimethylamine N-oxide reductase, catalytic subunit G6845 (ynfE, b1587) -> oxidoreductase subunit G7022 (torZ, bisZ) -> trimethylamine N-oxide reductase III, TorZ subunit |
| Group 097 | Candidate 0202 | 1.000 | 3 | 1.000 | 5 | Genes in candidate EG10734 (pstS, b3728) -> PstS EG10735 (phoU, b3724) -> PhoU phosphate transport system protein EG10782 (pstA, b3726) -> PstA EG10783 (pstB, b3725) -> PstB EG10784 (pstC, b3727) -> PstC |
| Group 098 | Candidate 0231 | 1.000 | 15 | 0.600 | 5 | Genes in candidate EG10377 (glgA, b3429) -> glycogen synthase EG10378 (glgB, b3432) -> 1,4-α-glucan branching enzyme EG10379 (glgC, b3430) -> GlgC EG10380 (glgP, b3428) -> GlgP EG10560 (malP, blu) -> maltodextrin phosphorylase monomer |
| Group 099 | Candidate 0192 | 1.000 | 3 | 0.000 | 5 | Genes in candidate EG10993 (tdh, b3616) -> Tdh EG12417 (gatD, b2091) -> galactitol-1-phosphate dehydrogenase G6838 (rspB, b1580) -> predicted oxidoreductase, Zn-dependent and NAD(P)-binding G6963 (ydjL, b1776) -> predicted oxidoreductase, Zn-dependent and NAD(P)-binding G7339 (yphC, b2545) -> predicted oxidoreductase, Zn-dependent and NAD(P)-binding |
| Group 100 | Genes common to all candidates in group EG10240 (dnaJ, b0015) -> chaperone with DnaK; heat shock protein EG10416 (grpE, b2614) -> phage lambda replication; host DNA synthesis; heat shock protein; protein repair G6357 (hscC, b0650) -> Hsc62, Hsp70 family chaperone, binds to RpoD and inhibits transcription | |||||
| Candidate 0244 | 1.000 | 3 | 0.800 | 5 | Additional genes in candidate EG10241 (dnaK, b0014) -> chaperone Hsp70; DNA biosynthesis; autoregulated heat shock proteins EG12193 (cbpA, b1000) -> CbpA monomer | |
| Candidate 0243 | 1.000 | 2 | 0.800 | 5 | Additional genes in candidate EG12193 (cbpA, b1000) -> CbpA monomer EG12200 (yegD, b2069) -> actin family protein | |
| Candidate 0245 | 1.000 | 7 | 0.800 | 5 | Additional genes in candidate EG10241 (dnaK, b0014) -> chaperone Hsp70; DNA biosynthesis; autoregulated heat shock proteins EG12130 (hscA, b2526) -> chaperone, member of Hsp70 protein family |
| Group 101 | Candidate 0241 | 1.000 | 2 | 0.200 | 5 | Genes in candidate EG10248 (dppA, b3544) -> DppA G2002 (sapA, b1294) -> SapA G6430 (gsiB, b0830) -> GsiB G6780 (ddpB, b1486) -> YddR G6781 (ddpA, b1487) -> YddS |
| Group 102 | Candidate 0217 | 1.000 | 6 | 0.200 | 5 | Genes in candidate EG10632 (nagA, b0677) -> NagA EG10633 (nagB, b0678) -> NagB EG11728 (yieK, b3718) -> predicted 6-phosphogluconolactonase EG12766 (agaA, b3135) -> predicted truncated N-acetylgalactosamine-6-phosphate deacetylase G7636 (agaI, b3141) -> predicted galactosamine-6-phosphate isomerase |
| Group 103 | Candidate 0180 | 1.000 | 4 | 0.000 | 5 | Genes in candidate EG12077 (nikC, b3478) -> NikC G6431 (gsiC, b0831) -> GsiC G6432 (gsiD, b0832) -> GsiD G6779 (ddpC, b1485) -> YddQ G6780 (ddpB, b1486) -> YddR |
| Group 104 | Candidate 0210 | 1.000 | 3 | 1.000 | 5 | Genes in candidate EG10682 (pabA, b3360) -> PabA EG10683 (pabB, b1812) -> PabB EG11026 (trpC, b1262) -> indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase EG11027 (trpD, b1263) -> anthranilate synthase component II EG11028 (trpE, b1264) -> anthranilate synthase component I |
| Group 105 | Genes common to all candidates in group G363 (flgG, b1078) -> flagellar basal-body rod protein FlgG EG11967 (flgK, b1082) -> flagellar biosynthesis, hook-filament junction protein 1 EG11545 (flgL, b1083) -> flagellar biosynthesis; hook-filament junction protein EG10321 (fliC, b1923) -> flagellar biosynthesis; flagellin, filament structural protein | |||||
| Candidate 0234 | 1.000 | 5 | 1.000 | 5 | Additional genes in candidate EG11654 (fliG, b1939) -> flagellar motor switch protein FliG | |
| Candidate 0233 | 1.000 | 4 | 1.000 | 5 | Additional genes in candidate G365 (flgI, b1080) -> flagellar P-ring protein FlgI |
| Group 106 | Candidate 0174 | 1.000 | 9 | 0.400 | 5 | Genes in candidate G6155 (yagR, b0284) -> aldehyde ferredoxin oxidoreductase: molybdenum cofactor-binding subunit G7485 (xdhA, b2866) -> xanthine dehydrogenase subunit with putative molybdenum cofactor-binding domain G7486 (xdhB, b2867) -> putative xanthine dehydrogenase subunit, FAD-binding domain G7487 (xdhC, b2868) -> putative xanthine dehydrogenase, Fe-S subunit G7500 (xdhD, b2881) -> putative oxidoreductase; possible component of selenate reductase with possible role in purine salvage |
| Group 107 | Candidate 0257 | 1.000 | 3 | 0.000 | 5 | Genes in candidate EG10131 (cadA, b4131) -> CadA EG10961 (speC, b2965) -> SpeC EG10964 (speF, b0693) -> SpeF EG11501 (adiA, b4117) -> Adi G6094 (ldcC, b0186) -> LdcC |
| Group 108 | Candidate 0200 | 1.000 | 4 | 1.000 | 5 | Genes in candidate EG10812 (queA, b0405) -> S-adenosylmethionine:tRNA ribosyltransferase-isomerase EG10938 (secD, b0408) -> SecD EG10940 (secF, b0409) -> SecF EG10996 (tgt, b0406) -> tRNA-guanine transglycosylase monomer EG11096 (yajC, b0407) -> YajC |
| Group 109 | Candidate 0256 | 1.000 | 3 | 1.000 | 5 | Genes in candidate EG10146 (cheA, b1888) -> CheA(S) EG10147 (cheB, b1883) -> CheB-Pasp EG10148 (cheR, b1884) -> chemotaxis protein methyltransferase EG10149 (cheW, b1887) -> CheW EG10150 (cheY, b1882) -> CheY-acetylated |
| Group 110 | Candidate 0216 | 1.000 | 1 | 0.200 | 5 | Genes in candidate EG10636 (nagC, b0676) -> NagC transcriptional dual regulator EG11288 (mak, b0394) -> manno(fructo)kinase EG11956 (alsK, b4084) -> D-allose kinase G6852 (dgsA, b1594) -> DgsA transcriptional repressor G7344 (yphH, b2550) -> predicted DNA-binding transcriptional regulator, NAGC-like |
| Group 111 | Candidate 0238 | 1.000 | 8 | 0.800 | 5 | Genes in candidate EG10271 (exbB, b3006) -> ExbB protein; uptake of enterochelin; tonB-dependent uptake of B colicins EG10272 (exbD, b3005) -> ExbD uptake of enterochelin; tonB-dependent uptake of B colicins EG11008 (tolB, b0740) -> TolB EG11010 (tolQ, b0737) -> TolQ EG11011 (tolR, b0738) -> TolR |
| Group 112 | Candidate 0186 | 1.000 | 2 | 1.000 | 5 | Genes in candidate EG11317 (fabD, b1092) -> malonyl-CoA-ACP transacylase EG11318 (fabG, b1093) -> 3-oxo-acyl-[acyl-carrier-protein] reductase EG11494 (yceG, b1097) -> predicted aminodeoxychorismate lyase EG12606 (fabF, b1095) -> FabF EG50003 (acpP, b1094) -> trans-Δ3-cis-Δ5-dodecenoyl-ACP |
| Group 113 | Candidate 0225 | 0.999 | 8 | 0.000 | 5 | Genes in candidate EG10475 (hycB, b2724) -> hydrogenase 3, Fe-S subunit EG11150 (hyfA, b2481) -> hydrogenase 4, component A EG11552 (hydN, b2713) -> putative electron transport protein HydN EG12277 (ysaA, b3573) -> predicted hydrogenase, 4Fe-4S ferredoxin-type component G7505 (ygfS, b2886) -> predicted oxidoreductase, 4Fe-4S ferredoxin-type subunit |
| Group 114 | Candidate 0193 | 0.999 | 2 | 0.000 | 5 | Genes in candidate EG10991 (tdcC, b3116) -> TdcC threonine STP transporter EG12142 (sdaC, b2796) -> SdaC serine STP transporter EG12266 (yhjV, b3539) -> YhjV STP transporter EG12754 (yhaO, b3110) -> YhaO STP transporter G7465 (yqeG, b2845) -> YqeG STP transporter |
| Group 115 | Candidate 0222 | 0.999 | 1 | 0.200 | 5 | Genes in candidate EG10567 (manX, b1817) -> ManX EG10568 (manY, b1818) -> ManY EG10569 (manZ, b1819) -> ManZ G7632 (agaV, b3133) -> PTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA) G7635 (agaD, b3140) -> AgaD |
| Group 116 | Genes common to all candidates in group G7487 (xdhC, b2868) -> putative xanthine dehydrogenase, Fe-S subunit G6157 (yagT, b0286) -> aldehyde ferredoxin oxidoreductase, Fe-S subunit G6155 (yagR, b0284) -> aldehyde ferredoxin oxidoreductase: molybdenum cofactor-binding subunit | |||||
| Candidate 0276 | 1.000 | 1 | 0.750 | 4 | Additional genes in candidate G6156 (yagS, b0285) -> aldehyde ferredoxin oxidoreductase, FAD-binding subunit | |
| Candidate 0275 | 1.000 | 2 | 0.250 | 4 | Additional genes in candidate G7485 (xdhA, b2866) -> xanthine dehydrogenase subunit with putative molybdenum cofactor-binding domain |
| Group 117 | Candidate 0391 | 1.000 | 1 | 0.000 | 4 | Genes in candidate EG10216 (dedA, b2317) -> conserved inner membrane protein EG11571 (yabI, b0065) -> conserved inner membrane protein EG11824 (yghB, b3009) -> conserved inner membrane protein G7609 (yqjA, b3095) -> conserved inner membrane protein |
| Group 118 | Candidate 0373 | 1.000 | 3 | 0.000 | 4 | Genes in candidate EG10356 (fumA, b1612) -> fumarase A monomer EG10357 (fumB, b4122) -> fumarase B monomer EG11168 (ttdA, b3061) -> L-tartrate dehydratase, α subunit EG11169 (ttdB, b3062) -> L-tartrate dehydratase, β subunit |
| Group 119 | Candidate 0386 | 1.000 | 1 | 1.000 | 4 | Genes in candidate EG10248 (dppA, b3544) -> DppA G6779 (ddpC, b1485) -> YddQ G6780 (ddpB, b1486) -> YddR G6781 (ddpA, b1487) -> YddS |
| Group 120 | Candidate 0385 | 1.000 | 2 | 0.500 | 4 | Genes in candidate EG10257 (edd, b1851) -> phosphogluconate dehydratase EG10496 (ilvD, b3771) -> IlvD G6141 (yagF, b0269) -> CP4-6 prophage; predicted dehydratase G7910 (yjhG, b4297) -> KpLE2 phage-like element; predicted dehydratase |
| Group 121 | Candidate 0299 | 1.000 | 7 | 0.250 | 4 | Genes in candidate EG11791 (cmtB, b2934) -> CmtB EG12495 (ulaC, b4195) -> UlaC EG12554 (sgcA, b4302) -> SgcA G7856 (ulaA, b4193) -> UlaA |
| Group 122 | Candidate 0344 | 1.000 | 3 | 0.500 | 4 | Genes in candidate EG10788 (ptsH, b2415) -> HPr EG10789 (ptsI, b2416) -> PTS enzyme I EG12147 (npr, b3206) -> phosphocarrier protein HPr-like NPr, nitrogen related, exchanges phosphate with Enzyme I, Hpr EG12399 (dhaM, b1198) -> dihydroxyacetone kinase subunit M |
| Group 123 | Candidate 0283 | 1.000 | 1 | 0.000 | 4 | Genes in candidate EG12232 (dtpB, b3496) -> DtpB dipeptide transporter EG12469 (yjdL, b4130) -> YjdL peptide transporter G6378 (dtpD, b0709) -> DtpD peptide POT Transporter G6877 (tppB, b1634) -> TppB peptide POT Transporter |
| Group 124 | Candidate 0268 | 1.000 | 2 | 0.000 | 4 | Genes in candidate G6521 (rutC, b1010) -> predicted aminoacrylate peracid reductase G7626 (tdcF, b3113) -> predicted L-PSP (mRNA) endoribonuclease G7877 (yjgF, b4243) -> conserved protein G7879 (yjgH, b4248) -> predicted mRNA endoribonuclease |
| Group 125 | Candidate 0407 | 1.000 | 1 | 1.000 | 4 | Genes in candidate EG10017 (ispB, b3187) -> IspB EG50001 (rplU, b3186) -> 50S ribosomal subunit protein L21 EG50002 (rpmA, b3185) -> 50S ribosomal subunit protein L27 G7656 (obgE, b3183) -> GTPase involved in chromosome partitioning and ribosome assembly |
| Group 126 | Genes common to all candidates in group G6478 (ssuA, b0936) -> SsuA G6476 (ssuC, b0934) -> SsuC G6219 (tauC, b0367) -> TauC | |||||
| Candidate 0274 | 1.000 | 1 | 0.250 | 4 | Additional genes in candidate G6217 (tauA, b0365) -> TauA | |
| Candidate 0281 | 1.000 | 1 | 0.500 | 4 | Additional genes in candidate EG12358 (ssuB, b0933) -> SsuB |
| Group 127 | Candidate 0402 | 1.000 | 7 | 0.000 | 4 | Genes in candidate EG10132 (cadB, b4132) -> CadB cadaverine/lysine APC exchanger EG10753 (potE, b0692) -> putrescine/proton symporter: putrescine/ornithine antiporter EG12462 (adiC, b4115) -> AdiC G6861 (ydgI, b1605) -> ArcD APC transporter |
| Group 128 | Candidate 0406 | 1.000 | 1 | 0.000 | 4 | Genes in candidate EG10027 (ackA, b2296) -> propionate kinase / acetate kinase EG11172 (tdcD, b3115) -> propionate kinase EG20173 (pta, b2297) -> Pta G7288 (eutD, b2458) -> predicted phosphotransacetylase subunit |
| Group 129 | Candidate 0376 | 1.000 | 1 | 0.500 | 4 | Genes in candidate EG10336 (fruA, b2167) -> FruA EG10337 (fruK, b2168) -> 1-phosphofructokinase monomer EG11863 (frvB, b3899) -> FrvB G7990 (fruB, b2169) -> FruB |
| Group 130 | Candidate 0394 | 1.000 | 1 | 0.250 | 4 | Genes in candidate EG10205 (dapA, b2478) -> DapA EG10637 (nanA, b3225) -> NanA G6140 (yagE, b0268) -> CP4-6 prophage; predicted lyase/synthase G7911 (yjhH, b4298) -> predicted lyase/synthase |
| Group 131 | Candidate 0307 | 1.000 | 4 | 0.000 | 4 | Genes in candidate EG11556 (talB, b0008) -> transaldolase B EG11797 (talA, b2464) -> transaldolase A EG11905 (fsaB, b3946) -> fructose 6-phosphate aldolase 2 G6428 (fsaA, b0825) -> Fsa |
| Group 132 | Candidate 0382 | 1.000 | 10 | 0.000 | 4 | Genes in candidate EG10282 (fbaA, b2925) -> fructose bisphosphate aldolase monomer EG12419 (gatY, b2096) -> GatY EG12768 (kbaY, b3137) -> KbaY G6960 (ydjI, b1773) -> predicted aldolase |
| Group 133 | Candidate 0322 | 1.000 | 1 | 0.000 | 4 | Genes in candidate EG11176 (garR, b3125) -> tartronate semialdehyde reductase EG11847 (yihU, b3882) -> succinate semialdehyde reductase G6278 (glxR, b0509) -> tartronate semialdehyde reductase 2 G7417 (ygbJ, b2736) -> predicted dehydrogenase, with NAD(P)-binding Rossmann-fold domain |
| Group 134 | Candidate 0361 | 1.000 | 1 | 1.000 | 4 | Genes in candidate EG10606 (mrdA, b0635) -> cell shape; peptidoglycan synthetase; penicillin-binding protein 2 EG10607 (mrdB, b0634) -> rod shape-determining membrane protein; sensitivity to radiation and drugs EG10608 (mreB, b3251) -> MreB EG10609 (mreC, b3250) -> MreC |